Query psy15415
Match_columns 128
No_of_seqs 159 out of 707
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 20:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 7.4E-34 2.5E-38 201.9 3.0 75 2-78 23-99 (102)
2 2hdc_A Protein (transcription 100.0 7.7E-34 2.6E-38 200.2 1.4 71 2-74 22-94 (97)
3 2c6y_A Forkhead box protein K2 100.0 2.5E-33 8.6E-38 201.8 3.3 58 2-59 36-95 (111)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 1.9E-33 6.5E-38 202.0 2.3 72 2-75 23-96 (109)
5 1kq8_A HFH-1, hepatocyte nucle 100.0 4.7E-33 1.6E-37 197.2 3.3 71 2-74 22-95 (100)
6 3bpy_A FORK head domain, forkh 100.0 6.1E-32 2.1E-36 186.4 3.6 56 2-57 25-85 (85)
7 3l2c_A Forkhead box protein O4 100.0 1.7E-31 5.7E-36 192.0 3.6 59 2-60 44-107 (110)
8 3coa_C Forkhead box protein O1 100.0 2.1E-31 7.3E-36 193.3 3.5 59 2-60 31-94 (117)
9 1e17_A AFX; DNA binding domain 100.0 1.5E-30 5.1E-35 195.8 1.6 59 2-60 60-123 (150)
10 2a07_F Forkhead box protein P2 100.0 1.1E-30 3.8E-35 183.0 -0.6 55 2-59 23-77 (93)
11 3g73_A Forkhead box protein M1 99.9 1.9E-28 6.6E-33 182.9 2.0 58 2-60 38-96 (142)
12 1ufn_A Putative nuclear protei 40.8 7.1 0.00024 26.7 0.5 13 21-33 62-74 (94)
13 1h5p_A Nuclear autoantigen SP1 40.2 7.5 0.00026 26.7 0.5 15 21-35 57-71 (95)
14 1oqj_A Glucocorticoid modulato 30.0 10 0.00036 26.0 -0.1 15 20-34 54-68 (97)
15 2y9w_C Lectin-like fold protei 22.5 25 0.00086 25.0 0.7 21 39-60 105-125 (150)
16 2lmd_A Prospero homeobox prote 21.1 42 0.0014 25.1 1.7 31 2-36 123-153 (174)
17 2qwz_A Phenylacetic acid degra 20.2 45 0.0015 23.2 1.7 20 1-20 22-41 (159)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=99.98 E-value=7.4e-34 Score=201.89 Aligned_cols=75 Identities=29% Similarity=0.516 Sum_probs=65.5
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhcccCccccccccc--CCCCcceEeeCCCchHHHhhhccccccccccc
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSDMEPVEDASKSNWVSIKVTGV 78 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSln~~F~Kv~r~--~~Gkg~~W~i~~~~~~e~~~~~~~~~rk~~~~ 78 (128)
+|||+|||+||+++||||+.++.|||||||||||||+||+||+++ ++|||+||+|+|+ .++.|..+...|++++.
T Consensus 23 ~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~p~--~~~~f~~g~~~rr~~~~ 99 (102)
T 1vtn_C 23 MLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPS--SGNMFENGCYLRRQKRF 99 (102)
T ss_dssp CBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEECGG--GCSTTCSSCSSSCSSCC
T ss_pred CCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEECcC--HHHHhhcCCeecccccc
Confidence 699999999999999999999999999999999999999999985 5799999999996 46677766555555443
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.97 E-value=7.7e-34 Score=200.22 Aligned_cols=71 Identities=35% Similarity=0.557 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhcccCccccccccc--CCCCcceEeeCCCchHHHhhhccccccc
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSDMEPVEDASKSNWVSIK 74 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSln~~F~Kv~r~--~~Gkg~~W~i~~~~~~e~~~~~~~~~rk 74 (128)
+|||+|||+||+++||||+.++.|||||||||||||+||+||+++ ++|||+||+|+|+ .++.|..+..+|+
T Consensus 22 ~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p~--~~~~f~~g~~~rr 94 (97)
T 2hdc_A 22 KLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ--SEDMFDNGSFLRR 94 (97)
T ss_dssp CBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCTT--HHHHHHHSCCCSS
T ss_pred CCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECcC--HHHHHhCCCccCC
Confidence 799999999999999999999999999999999999999999986 5799999999996 5677765444333
No 3
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=99.97 E-value=2.5e-33 Score=201.84 Aligned_cols=58 Identities=36% Similarity=0.678 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhcccCccccccccc--CCCCcceEeeCCC
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSDM 59 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSln~~F~Kv~r~--~~Gkg~~W~i~~~ 59 (128)
+|||+|||+||+++||||+.++.|||||||||||||+||+||+++ ++|||+||+|+|+
T Consensus 36 ~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~ 95 (111)
T 2c6y_A 36 QLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPA 95 (111)
T ss_dssp CEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHH
T ss_pred CCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEEeChh
Confidence 699999999999999999999999999999999999999999985 5899999999995
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.97 E-value=1.9e-33 Score=201.96 Aligned_cols=72 Identities=35% Similarity=0.540 Sum_probs=62.0
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhcccCccccccccc--CCCCcceEeeCCCchHHHhhhcccccccc
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA--SQGAGHLWNLSDMEPVEDASKSNWVSIKV 75 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSln~~F~Kv~r~--~~Gkg~~W~i~~~~~~e~~~~~~~~~rk~ 75 (128)
+|||+|||+||+++||||+.+++|||||||||||||+||+||+++ ++|||+||+|+|+ .++.|.++..+|++
T Consensus 23 ~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p~--~~~~f~~g~~~Rrr 96 (109)
T 2hfh_A 23 KLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPQ--SEDMFDNGSFLRRR 96 (109)
T ss_dssp CBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCTT--CCHHHHSSSCC---
T ss_pred CCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECcc--HHHHHhCCCcccCc
Confidence 799999999999999999999999999999999999999999986 5899999999996 45667654444443
No 5
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=99.97 E-value=4.7e-33 Score=197.15 Aligned_cols=71 Identities=28% Similarity=0.447 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhcccCcccccccccC--C-CCcceEeeCCCchHHHhhhccccccc
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKAS--Q-GAGHLWNLSDMEPVEDASKSNWVSIK 74 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSln~~F~Kv~r~~--~-Gkg~~W~i~~~~~~e~~~~~~~~~rk 74 (128)
+|||+|||+||+++||||+.+.+|||||||||||||+||+||+++. + |||+||+|+|+ .+..|..+..+|+
T Consensus 22 ~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~p~--~~~~f~~g~~~rr 95 (100)
T 1kq8_A 22 RLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNPN--SEYTFADGVFRRR 95 (100)
T ss_dssp CBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC----------------
T ss_pred CCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEECcC--HHHHHhCCCcccC
Confidence 7999999999999999999999999999999999999999999863 3 99999999996 5666765444443
No 6
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=99.97 E-value=6.1e-32 Score=186.41 Aligned_cols=56 Identities=32% Similarity=0.587 Sum_probs=53.4
Q ss_pred cccHHHHHHHHHhcCCCccCC-----CcchhhhhhhhcccCcccccccccCCCCcceEeeC
Q psy15415 2 ALTANLRLFFHRERFPYYNQN-----DDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLS 57 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~-----~~gWkNSIRHNLSln~~F~Kv~r~~~Gkg~~W~i~ 57 (128)
+|||+|||+||+++||||+.+ ..|||||||||||||+||+||+++++|||+||+||
T Consensus 25 ~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKg~~W~ld 85 (85)
T 3bpy_A 25 RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLN 85 (85)
T ss_dssp CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC
T ss_pred CccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCCCCCCCCCceecC
Confidence 699999999999999999976 46999999999999999999999999999999997
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=99.97 E-value=1.7e-31 Score=191.98 Aligned_cols=59 Identities=31% Similarity=0.537 Sum_probs=53.8
Q ss_pred cccHHHHHHHHHhcCCCccCC-----CcchhhhhhhhcccCcccccccccCCCCcceEeeCCCc
Q psy15415 2 ALTANLRLFFHRERFPYYNQN-----DDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~-----~~gWkNSIRHNLSln~~F~Kv~r~~~Gkg~~W~i~~~~ 60 (128)
+|||+|||+||+++||||+.+ ..|||||||||||||+||+||+++++|||+||+|||+.
T Consensus 44 ~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r~~~GKG~~W~l~p~~ 107 (110)
T 3l2c_A 44 RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEG 107 (110)
T ss_dssp CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECCCSTTCCCEEEEC---
T ss_pred CcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCCCCCCCCceEEECccc
Confidence 699999999999999999976 47999999999999999999999999999999999963
No 8
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=99.96 E-value=2.1e-31 Score=193.34 Aligned_cols=59 Identities=29% Similarity=0.543 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHhcCCCccCCC-----cchhhhhhhhcccCcccccccccCCCCcceEeeCCCc
Q psy15415 2 ALTANLRLFFHRERFPYYNQND-----DRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~-----~gWkNSIRHNLSln~~F~Kv~r~~~Gkg~~W~i~~~~ 60 (128)
+|||+|||+||+++||||+.++ .|||||||||||||+||+||+++++|||+||+|+|+.
T Consensus 31 ~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~~~~GKg~~W~l~p~~ 94 (117)
T 3coa_C 31 RLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQNEGTGKSSWWMLNPEG 94 (117)
T ss_dssp CBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECCSSTTCCCEEEECC--
T ss_pred CccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhcccccCCCCCcceEEECccc
Confidence 7999999999999999999876 7999999999999999999999989999999999974
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=99.96 E-value=1.5e-30 Score=195.79 Aligned_cols=59 Identities=31% Similarity=0.537 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHhcCCCccCC-----CcchhhhhhhhcccCcccccccccCCCCcceEeeCCCc
Q psy15415 2 ALTANLRLFFHRERFPYYNQN-----DDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~-----~~gWkNSIRHNLSln~~F~Kv~r~~~Gkg~~W~i~~~~ 60 (128)
+|||+|||+||+++||||+.+ ..|||||||||||||+||+||+++++|||+||+|||+.
T Consensus 60 ~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r~~~GKG~~W~ldp~~ 123 (150)
T 1e17_A 60 RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEG 123 (150)
T ss_dssp CEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECCTTTSSSCEEEECTTC
T ss_pred CccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCCCCCCCcceEEECccc
Confidence 799999999999999999975 48999999999999999999999889999999999974
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=99.95 E-value=1.1e-30 Score=182.97 Aligned_cols=55 Identities=33% Similarity=0.645 Sum_probs=52.5
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhcccCcccccccccCCCCcceEeeCCC
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDM 59 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSln~~F~Kv~r~~~Gkg~~W~i~~~ 59 (128)
+|||+|||+||+++||||+.+++|||||||||||+|+||+||++ |||+||+|||+
T Consensus 23 ~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~---gkG~~W~l~~~ 77 (93)
T 2a07_F 23 QLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN---VKGAVWTVDEV 77 (93)
T ss_dssp CBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC---SSSEECCBCHH
T ss_pred CccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC---CCCCeeEEChH
Confidence 79999999999999999999999999999999999999999974 89999999984
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.9e-28 Score=182.88 Aligned_cols=58 Identities=28% Similarity=0.619 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHhcCCCccC-CCcchhhhhhhhcccCcccccccccCCCCcceEeeCCCc
Q psy15415 2 ALTANLRLFFHRERFPYYNQ-NDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~-~~~gWkNSIRHNLSln~~F~Kv~r~~~Gkg~~W~i~~~~ 60 (128)
+|||+|||+||+++||||+. +..|||||||||||||+||+|+. +++|||+||+|+|+.
T Consensus 38 ~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~-~~~GKg~~W~i~p~~ 96 (142)
T 3g73_A 38 RMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET-SANGKVSFWTIHPSA 96 (142)
T ss_dssp EECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE-CTTSCCEEEEECTTT
T ss_pred CcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC-CCCCCCceEEECccc
Confidence 69999999999999999998 88999999999999999999964 468999999999985
No 12
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=40.75 E-value=7.1 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.9
Q ss_pred CCCcchhhhhhhh
Q psy15415 21 QNDDRWKNSVRHN 33 (128)
Q Consensus 21 ~~~~gWkNSIRHN 33 (128)
...+.||-|||+|
T Consensus 62 ~~sKdWKrSIr~~ 74 (94)
T 1ufn_A 62 ATSKDWKGVIRCN 74 (94)
T ss_dssp TTCSCHHHHCEET
T ss_pred ccccCcceeeEEC
Confidence 4568999999986
No 13
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=40.23 E-value=7.5 Score=26.69 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=11.8
Q ss_pred CCCcchhhhhhhhcc
Q psy15415 21 QNDDRWKNSVRHNLS 35 (128)
Q Consensus 21 ~~~~gWkNSIRHNLS 35 (128)
...+.||-|||+|=.
T Consensus 57 ~~sKdWKrSIR~~G~ 71 (95)
T 1h5p_A 57 GASKNWKLSIRCGGY 71 (95)
T ss_dssp STTCCHHHHCEETTE
T ss_pred ccCcCcceeeEECCE
Confidence 556899999997643
No 14
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=29.96 E-value=10 Score=26.00 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=11.4
Q ss_pred cCCCcchhhhhhhhc
Q psy15415 20 NQNDDRWKNSVRHNL 34 (128)
Q Consensus 20 r~~~~gWkNSIRHNL 34 (128)
+...+.||-|||+|=
T Consensus 54 k~~sKdWK~sIR~~G 68 (97)
T 1oqj_A 54 KSTLKDWKRAIRLGG 68 (97)
T ss_dssp CGGGSCHHHHSEETT
T ss_pred cCCCCCcchheEECC
Confidence 345678999999763
No 15
>2y9w_C Lectin-like fold protein, polyphenol oxidase; oxidoreductase, copper-containing, pigmentation, type-3 COPP protein; HET: PGE; 2.30A {Agaricus bisporus} PDB: 2y9x_E
Probab=22.46 E-value=25 Score=25.03 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=15.6
Q ss_pred ccccccccCCCCcceEeeCCCc
Q psy15415 39 HFRKGVKASQGAGHLWNLSDME 60 (128)
Q Consensus 39 ~F~Kv~r~~~Gkg~~W~i~~~~ 60 (128)
..++|||+ .|.|..|+|.|..
T Consensus 105 fwirvpre-ggggavwtikpas 125 (150)
T 2y9w_C 105 FWIRVPRE-GGGGAVWTIKPAS 125 (150)
T ss_dssp EEEECCCT-TSCCCEEEEEESS
T ss_pred EEEECccc-CCCeeEEEecccc
Confidence 45677775 6678999999864
No 16
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=21.08 E-value=42 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHhcCCCccCCCcchhhhhhhhccc
Q psy15415 2 ALTANLRLFFHRERFPYYNQNDDRWKNSVRHNLSI 36 (128)
Q Consensus 2 rLTL~eIY~~I~~~fPyyr~~~~gWkNSIRHNLSl 36 (128)
..||.|.|..|..- |.++.+||-+|=--++.
T Consensus 123 ~~tLrEFf~aI~~G----kD~e~sWKK~IYKvI~k 153 (174)
T 2lmd_A 123 QITLREFFNAIIAG----KDVDPSWKKAIYKVICK 153 (174)
T ss_dssp HHHHHHHHHHHHHT----CTTSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC----CcCCchHHHHHHHHHHH
Confidence 46899999999864 68889999988665553
No 17
>2qwz_A Phenylacetic acid degradation-related protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=20.16 E-value=45 Score=23.20 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.8
Q ss_pred CcccHHHHHHHHHhcCCCcc
Q psy15415 1 MALTANLRLFFHRERFPYYN 20 (128)
Q Consensus 1 ~rLTL~eIY~~I~~~fPyyr 20 (128)
|.||+.||-++|.+.||++.
T Consensus 22 ~~~~~~~~~~~l~~~~p~~~ 41 (159)
T 2qwz_A 22 LVFDKDGLSAYLEEVFPQIQ 41 (159)
T ss_dssp CSSCHHHHHHHHHHHCGGGT
T ss_pred CcCCHHHHHHHHHhhCcccc
Confidence 56899999999999999874
Done!