RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15415
         (128 letters)



>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 75

 Score = 47.6 bits (113), Expect = 4e-09
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 13 RERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKA---SQGAGHLWNL 56
            +FP++  +   W+NSVRHNLS+N  F K ++      G  + W L
Sbjct: 27 MGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWML 73


>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 46.7 bits (111), Expect = 1e-08
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 13 RERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQGAGHLWNLSDME 60
             F Y+ +N   WKN+VRHNLS++  F   V+     G +W + ++E
Sbjct: 33 TRTFAYFRRNAATWKNAVRHNLSLHKCF---VRVENVKGAVWTVDEVE 77


>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 46.4 bits (110), Expect = 2e-08
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 13 RERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 56
           + +PYY   D  W+NS+RHNLS+N +F K  ++ +  G G  W +
Sbjct: 34 TKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRI 79


>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 97

 Score = 45.3 bits (107), Expect = 6e-08
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 13 RERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKASQ--GAGHLWNL 56
            RFPYY +    W+NS+RHNLS+N  F K  +     G G+ W L
Sbjct: 33 SNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTL 78


>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11
          (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 43.3 bits (102), Expect = 3e-07
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 13 RERFPYYNQNDDRWKNSVRHNLSINPHFRKGVKAS--QGAGHLWNL 56
           +RFP+Y +N   W+NS+RHNLS+N  F K  +     G G  W L
Sbjct: 35 MDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTL 80


>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 85

 Score = 42.6 bits (100), Expect = 5e-07
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 14 ERFPYYNQNDDR-----WKNSVRHNLSINPHFRKGVKASQGAGHLWNL 56
             PY+    D      WKNS+RHNLS++  F K    + G    W L
Sbjct: 37 RTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWML 84


>d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase
          {Thermotoga maritima [TaxId: 2336]}
          Length = 50

 Score = 23.4 bits (50), Expect = 3.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 5  ANLRLFFHRERFPYYNQNDDRWKNSVRHNLSINPHFRKGVK 45
          A L      ++F  Y   DD+    V HNLS      +GVK
Sbjct: 1  AKLEFLCKEDKFLVYRLYDDQHSLKVFHNLSGEEVVFEGVK 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.435 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 490,573
Number of extensions: 19970
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 10
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)