BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15417
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 291 bits (746), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 149/158 (94%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
TGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH + ++ D R VS + D +WD + P S + + P+G
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 78 ATGSDDATCRLF-------DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
A G D C ++ ++R +ELA ++ G S ++ D C
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHT------GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD ++ GH V L + D +G+ D+ ++W+
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 291 bits (746), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 149/158 (94%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
TGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH + ++ D R +S + D +WD + P S + + P+G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 78 ATGSDDATCRLF-------DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
A G D C ++ ++R +ELA ++ G S ++ D C
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHT------GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD ++ GH V L + D +G+ D+ ++W+
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 291 bits (746), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 149/158 (94%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AFA
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
TGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH + ++ D R VS + D +WD + P S + + P+G
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 123
Query: 78 ATGSDDATCRLF-------DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
A G D C ++ ++R +ELA ++ G S ++ D C
Sbjct: 124 ACGGLDNICSIYNLKTREGNVRVSRELAGHT------GYLSCCRFLDDNQIVTSSGDTTC 177
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD ++ GH V L + D +G+ D+ ++W+
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 291 bits (745), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 149/158 (94%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
TGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH + ++ D R +S + D +WD + P S + + P+G
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 78 ATGSDDATCRLF-------DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
A G D C ++ ++R +ELA ++ G S ++ D C
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHT------GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD ++ GH V L + D +G+ D+ ++W+
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 291 bits (745), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 136/158 (86%), Positives = 149/158 (94%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
TGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 13/166 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH + ++ D R VS + D +WD + P S + + P+G
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 78 ATGSDDATCRLF-------DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
A G D C ++ ++R +ELA ++ G S ++ D C
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHT------GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD ++ GH V L + D +G+ D+ ++W+
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 18 GHTGDVMSLSLAPDM--RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW 75
GH DV+ L LAP TFVSG CD A +WD+R G C Q F HESD+N+V ++P+G
Sbjct: 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
AFA+GSDDATCRL+D+RAD+E+A+YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 254 AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
+K R IL GH+NRVS L V+ DG A +GSWD LR+W
Sbjct: 314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH V+ + D R VS + D +WD + + + + A + P+G A
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIIC----GITSVAFSRSGRLLLAGYDDFNCNVW 133
A G D C ++ + D+ M + + +++ +F+ S +L D C +W
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181
Query: 134 DSMKTERAGILAGHDNRVSCLGV--TEDGMAVATGSWDSFLRIWN 176
D + GH V CL + +E G +G D +W+
Sbjct: 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 23 VMSLSLAPDMRTFVSGACDASAKLWDI------RDGSCKQTFPGHESDINAVTFFPNGWA 76
VM+ + AP G D ++ + + K++ H + ++A +F +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHD-NIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
T S D TC L+D+ + Q L + + H +++C +A S +G ++G D VWD
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLC--LDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ H++ V+ + G A A+GS D+ R+++
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
MKT R L GH N+V C+ +D + + S D + +W+
Sbjct: 54 MKTRRT--LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 166 bits (420), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 121/181 (66%), Gaps = 11/181 (6%)
Query: 6 DKSALLGSPAASGHTGDVMSLSL-APDMRTFVSGACDASAKLWDIRDGS-CKQTFPGHES 63
+ ++ GS SGHT DV+SLS+ + + F+SG+CD + +LWD+R S +T+ GHE
Sbjct: 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG 250
Query: 64 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-----HDNIICGITSVAFSRSG 118
DIN+V FFP+G F TGSDD TCRLFD+R +L +Y+ +DN + +TSVAFS SG
Sbjct: 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310
Query: 119 RLLLAGYDDFNCNVWDSMKTERA---GILAG-HDNRVSCLGVTEDGMAVATGSWDSFLRI 174
RLL AGY + +C VWD++ E G L H+ R+SCLG++ DG A+ TGSWD L+I
Sbjct: 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Query: 175 W 175
W
Sbjct: 371 W 371
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GH+G V SL P+ VS + D +W+ H + F PNG +
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 77 FATGSDDATCRLFDI--RADQELAMYSHDNIICGITSVAFS-----RSGRLLLAGYDDFN 129
A G D+ C +F++ +AD++ M ++ G A S L+ G D
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 130 CNVWDSMKTERAGIL-----AGHDNRVSCLGVTE-DGMAVATGSWDSFLRIWN 176
C +WD +R I +GH V L + + +GS D+ +R+W+
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 23 VMSLSLAPDMRTFVSGACDASAKLWDI-----RDGS--CKQTFPGHESDINAVTFFPNGW 75
VM + AP+ ++ G D++ ++++ RDG+ + GH+ ++ + P+
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE 170
Query: 76 A-FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS-----GRLLLAGYDDFN 129
TGS D TC L+D+ Q ++++ + G T+ S S + ++G D
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 130 CNVWDSMKTERA-GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD T RA GH+ ++ + DG TGS D R+++
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S +N V F P+G
Sbjct: 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAFS G+ + + DD +W+
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWN-R 332
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + DG +A+ S D +++WN
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G
Sbjct: 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 481
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAFS G+ + + DD +W+
Sbjct: 482 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWN-R 537
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + DG +A+ S D +++WN
Sbjct: 538 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G
Sbjct: 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAFS G+ + + DD +W+
Sbjct: 113 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWN-R 168
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + DG +A+ S D +++WN
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G
Sbjct: 136 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 194
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAFS G+ + + DD +W+
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWN-R 250
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V+ + DG +A+ S D +++WN
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAF G+ + + DD +W+
Sbjct: 236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNG---VAFRPDGQTIASASDDKTVKLWN-R 291
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + DG +A+ S D +++WN
Sbjct: 292 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAFS + + + DD +W+
Sbjct: 400 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDDQTIASASDDKTVKLWN-R 455
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + DG +A+ S D +++WN
Sbjct: 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G A
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
+ SDD T +L++ + H + + G VAFS G+ + + DD +W+
Sbjct: 74 SASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + DG +A+ S D +++WN
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S + V F P+G
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQT 358
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ SDD T +L++ + H + + G VAFS G+ + + DD +W+
Sbjct: 359 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIASASDDKTVKLWN-R 414
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + V + + D +A+ S D +++WN
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +WD
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRIWD 141
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L H + VS + DG + + S+D RIW+
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 76
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 172 LRIWN 176
+RIW+
Sbjct: 137 VRIWD 141
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 106 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 165
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 225 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 63 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 21 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 80
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 135
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 71
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 172 LRIWN 176
+RIW+
Sbjct: 132 VRIWD 136
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 110 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 169
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 229 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 67 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 25 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 84
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 139
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 75
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 172 LRIWN 176
+RIW+
Sbjct: 136 VRIWD 140
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 79
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 134
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 70
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 172 LRIWN 176
+RIW+
Sbjct: 131 VRIWD 135
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 101 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 160
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 220 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 58 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 16 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 75
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 130
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 66
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 172 LRIWN 176
+RIW+
Sbjct: 127 VRIWD 131
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 104 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 163
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 223 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 61 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 19 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 78
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +WD
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRIWD 134
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L H + VS + DG + + S+D RIW+
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 69
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 172 LRIWN 176
+RIW+
Sbjct: 130 VRIWD 134
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +WD
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRIWD 141
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L H + VS + DG + + S+D RIW+
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 76
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 172 LRIWN 176
+RIW+
Sbjct: 137 VRIWD 141
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 164
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 79
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 134
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 70
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 172 LRIWN 176
+RIW+
Sbjct: 131 VRIWD 135
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 246 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 84 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 156
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 92
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 172 LRIWN 176
+RIW+
Sbjct: 153 VRIWD 157
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 111 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 26 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 85
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 140
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 76
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 172 LRIWN 176
+RIW+
Sbjct: 137 VRIWD 141
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 188
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 138 TERAGILAGHDNRVSCL----GVTEDGMAVATGSWDSFLRIWN 176
+ GH N C+ VT G + +GS D+ + IWN
Sbjct: 248 GKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWN 289
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 86 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 145
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 203 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 44 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 103
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 158
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 94
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 172 LRIWN 176
+RIW+
Sbjct: 155 VRIWD 159
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +WD
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRIWD 138
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L H + VS + DG + + S+D RIW+
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 73
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 172 LRIWN 176
+RIW+
Sbjct: 134 VRIWD 138
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 181
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 241 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 79 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 196 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 37 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 96
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 151
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + L H + VS + DG + + S+D RIW+
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 87
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 172 LRIWN 176
+RIW+
Sbjct: 148 VRIWD 152
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +WD
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRIWD 138
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L H + VS + DG + + S+D RIW+
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 73
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 172 LRIWN 176
+RIW+
Sbjct: 134 VRIWD 138
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ + L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ + + D K+W DG ++T GH+ I+ V + +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +WD
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRIWD 138
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L H + VS + DG + + S+D RIW+
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 111
K T GH +++V F PNG A S D ++ +D + ++ ++ + GI+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK-----LGISD 73
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 171
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 172 LRIWN 176
+RIW+
Sbjct: 134 VRIWD 138
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 23 VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD 82
+ S+ +PD + +GA D ++WDI + GHE DI ++ +FP+G +GS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 83 DATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSRS-GRLLLAGYDDFNCNVWDSMKTER 140
D T R++D+R Q L + D G+T+VA S G+ + AG D VWDS
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAGSLDRAVRVWDS----E 237
Query: 141 AGILA-----------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
G L GH + V + T DG +V +GS D +++WN
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 27/182 (14%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP-NGW 75
GH D+ SL P VSG+ D + ++WD+R G C T E + V P +G
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGK 220
Query: 76 AFATGSDDATCRLFD---------IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD 126
A GS D R++D + ++ E D++ SV F+R G+ +++G
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY----SVVFTRDGQSVVSGSL 276
Query: 127 DFNCNVWDSM--------KTERAG----ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 174
D + +W+ KT +G GH + V + T++ + +GS D +
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336
Query: 175 WN 176
W+
Sbjct: 337 WD 338
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC------------------KQTFPG 60
HT V + + D +G C+ + +++ + DGS + P
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 61 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSRSGR 119
+ I +V F P+G ATG++D R++DI + + + H+ I S+ + SG
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ---DIYSLDYFPSGD 178
Query: 120 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTE-DGMAVATGSWDSFLRIWN 176
L++G D +WD ++T + + ++ V+ + V+ DG +A GS D +R+W+
Sbjct: 179 KLVSGSGDRTVRIWD-LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD------------GSCKQTFPGHE 62
+ +GH V S+ D ++ VSG+ D S KLW++++ G+C+ T+ GH+
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310
Query: 63 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSG--- 118
+ +V N +GS D +D ++ L M H N + + S G
Sbjct: 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370
Query: 119 RLLLAGYDDFNCNVWDSMK 137
+ G D +W K
Sbjct: 371 NVFATGSGDCKARIWKYKK 389
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D + +WD K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 137
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D L H + VS + DG + + S+D RIW+
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 57 TFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITSVA 113
T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+ VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVA 75
Query: 114 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR 173
+S LL++ DD +WD + L GH N V C + +GS+D +R
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 174 IWN 176
IW+
Sbjct: 136 IWD 138
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V + P VSG+ D S ++WD++ G C +T P H ++AV F +G
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D CR++D + Q L D+ ++ V FS +G+ +LA D +WD K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 138 TERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSFLRIWN 176
+ GH N C+ G + +GS D+ + IWN
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWN 268
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + ++ + D VS + D + K+WD+ G C +T GH + + F P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+GS D + R++D++ L + +H + +++V F+R G L+++ D C +WD+
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSD---PVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 136 MKTERAGILAGHDN-RVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L DN VS + + +G + + D+ L++W+
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 82
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNII--CGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +W
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN-----FNPQSNLIVSGSFDESVRIW 137
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D L H + VS + DG + + S+D RIW+
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 57 TFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITSVA 113
T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+ VA
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVA 75
Query: 114 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR 173
+S LL++ DD +WD + L GH N V C + +GS+D +R
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 174 IWN 176
IW+
Sbjct: 136 IWD 138
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GHTG V S + ++ +SG+ D + K+W+ G C T GH S + +
Sbjct: 157 GHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RV 212
Query: 78 ATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
+GS DAT R++DI Q L + H + + V + GR +++G DF VWD
Sbjct: 213 VSGSRDATLRVWDIETGQCLHVLMGH---VAAVRCVQY--DGRRVVSGAYDFMVKVWDPE 267
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
L GH NRV L DG+ V +GS D+ +R+W+
Sbjct: 268 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GHT V SL D VSG+ D S ++WD+ G+C T GH+S + + N
Sbjct: 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--I 331
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNI-ICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+G+ D+T +++DI+ Q L N +T + F+++ ++ DD +WD
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWD 388
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG---HESDINAVTFFPN 73
+GH + L ++ VSG D++ K+WDI+ G C QT G H+S + + F N
Sbjct: 316 TGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Query: 74 GWAFATGSDDATCRLFDIRADQ 95
T SDD T +L+D++ +
Sbjct: 374 --FVITSSDDGTVKLWDLKTGE 393
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 98 AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT 157
+ HD+ + IT + F G +++G DD VW ++ + L GH V +
Sbjct: 113 VLKGHDDHV--ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 168
Query: 158 EDGMAVATGSWDSFLRIWN 176
++ + +GS D L++WN
Sbjct: 169 DN--IIISGSTDRTLKVWN 185
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 7/163 (4%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH+ V ++L+ + VS + D S +LW++++G C+ F GH D+ +V F P+
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 78 ATGSDDATCRLFDIRAD--QELAMYSHDNIICGITSVAFSRS--GRLLLAGYDDFNCNVW 133
+G D R+++++ + L+ +H + ++ V FS S ++++G D VW
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D L GH N V+ + V+ DG A+ D R+W+
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 71/169 (42%), Gaps = 19/169 (11%)
Query: 19 HTGDVMSLSLAP--DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
HT V + +P D VSG D K+WD+ G GH + + +VT P+G
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 77 FATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSGRLLLAG-------YD 126
A+ D RL+D+ A E+A + N IC FS + + A +D
Sbjct: 211 CASSDKDGVARLWDLTKGEALSEMAAGAPINQIC------FSPNRYWMCAATEKGIRIFD 264
Query: 127 DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
N ++ + E G VS + + DG + +G D+ +R+W
Sbjct: 265 LENKDIIVELAPEHQGSKKIVPECVS-IAWSADGSTLYSGYTDNVIRVW 312
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 144 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
L GH VS + ++ +G + SWD LR+WN
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN 95
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
A SGH V + P VS + DA+ K+WD G ++T GH + ++F +G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 75 WAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
A+ S D T +L+D + + + M+ HD+ ++SV+ +G +++ D +W
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDH---NVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
+ GH V + +DG +A+ S D +R+W
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH +V S+S+ P+ VS + D + K+W+++ G C +TF GH + V +G
Sbjct: 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249
Query: 78 ATGSDDATCRLFDIRADQ-ELAMYSHDNII-----------------CGITSVAFSRSGR 119
A+ S+D T R++ + + + + H +++ G + + G
Sbjct: 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 120 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
LL+G D +WD L GHDN V + G + + + D LR+W+
Sbjct: 310 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYSHDNIICGITSVA 113
K GH S + V F P + S+DAT +++D D E + H + + ++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD---SVQDIS 157
Query: 114 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR 173
F SG+LL + D +WD E + GHD+ VS + + +G + + S D ++
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 174 IWN 176
+W
Sbjct: 218 MWE 220
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GHT V +S + S + D + KLWD + C +T GH+ ++++V+ PNG
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 77 FATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
+ S D T ++++++ + ++ H + V ++ G L+ + +D VW
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHRE---WVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Query: 136 MKTERAGILAGHDNRVSCL 154
E L H + V C+
Sbjct: 264 ATKECKAELREHRHVVECI 282
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 24/181 (13%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN--- 73
+GH V + D S + D + ++W + CK H + +++ P
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290
Query: 74 -----------------GWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFS 115
G +GS D T +++D+ L + HDN + G V F
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG---VLFH 347
Query: 116 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
G+ +L+ DD VWD L H++ V+ L + V TGS D +++W
Sbjct: 348 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 176 N 176
Sbjct: 408 E 408
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR 92
+S A D + ++WD ++ C +T HE + ++ F TGS D T ++++ R
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 11 LGSPAAS--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 68
G P S GH+ V +L D +S + D + +LWD+ G Q F GH+SD+ +V
Sbjct: 54 FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSV 113
Query: 69 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS---GRLLLAGY 125
+GS D T +++ I+ + H++ + + V ++ +++
Sbjct: 114 DIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 126 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+D W+ + + GH++ ++ L + DG +A+ D + +WN
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 18 GHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
GH V + + P+ + T +S D K W++ + F GH S+IN +T
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA----GYDD 127
P+G A+ D L+++ A + S + + S+AFS + L A G
Sbjct: 206 PDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF---SLAFSPNRYWLAAATATGIKV 262
Query: 128 FNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
F+ + + D ++ E AG + L + DG + G D+ +R+W
Sbjct: 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 19/173 (10%)
Query: 18 GHTGDVMSLSLA---PDMRTFVSGACDASAKLW-----DIRDGSCKQTFPGHESDINAVT 69
GH G V SL+ + P++ +S + D + W D + G ++F GH + T
Sbjct: 15 GHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+G + S D T RL+D+ + + + SV + +++G D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVXSVDIDKKASXIISGSRDKT 130
Query: 130 CNVWDSMKTERAGILAGHDNRVSCLGVT------EDGMAVATGSWDSFLRIWN 176
VW ++K + L GH++ VS + V +D + + + D ++ WN
Sbjct: 131 IKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 11 LGSPAAS--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 68
G P S GH+ V +L D +S + D + +LWD+ G Q F GH+SD+ +V
Sbjct: 54 FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 69 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR----SGRLLLAG 124
+GS D T +++ I+ + H++ + + V + S ++ AG
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 125 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D W+ + + GH++ ++ L + DG +A+ D + +WN
Sbjct: 174 NDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 18 GHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
GH V + + P+ + T +S D K W++ + F GH S+IN +T
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIICGITSVAFSRSGRLLLA----G 124
P+G A+ D L+++ A + AMY+ D + S+AFS + L A G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF----SLAFSPNRYWLAAATATG 259
Query: 125 YDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
F+ + + D ++ E AG + L + DG + G D+ +R+W
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-- 75
GH ++ +L+ +PD S D LW++ T + ++ ++ F PN +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWL 252
Query: 76 --AFATG----SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
A ATG S D + D+R E A YS + S+A+S G+ L AGY D
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNV 309
Query: 130 CNVWDSM 136
VW M
Sbjct: 310 IRVWQVM 316
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 18 GHTGDVMSLSLA---PDMRTFVSGACDASAKLW-----DIRDGSCKQTFPGHESDINAVT 69
GH G V SL+ + P++ +S + D + W D + G ++F GH + T
Sbjct: 15 GHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+G + S D T RL+D+ + + + SV + ++++G D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKT 130
Query: 130 CNVWDSMKTERAGILAGHDNRVSCLGVT------EDGMAVATGSWDSFLRIWN 176
VW ++K + L GH++ VS + V +D + + + D ++ WN
Sbjct: 131 IKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 11 LGSPAAS--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 68
G P S GH+ V +L D +S + D + +LWD+ G Q F GH+SD+ +V
Sbjct: 54 FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 69 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR----SGRLLLAG 124
+GS D T +++ I+ + H++ + + V + S ++ AG
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 125 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D W+ + + GH++ ++ L + DG +A+ D + +WN
Sbjct: 174 NDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 18 GHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
GH V + + P+ + T +S D K W++ + F GH S+IN +T
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIICGITSVAFSRSGRLLLA----G 124
P+G A+ D L+++ A + AMY+ D + S+AFS + L A G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF----SLAFSPNRYWLAAATATG 259
Query: 125 YDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
F+ + + D ++ E AG + L + DG + G D+ +R+W
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-- 75
GH ++ +L+ +PD S D LW++ T + ++ ++ F PN +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWL 252
Query: 76 --AFATG----SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
A ATG S D + D+R E A YS + S+A+S G+ L AGY D
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNV 309
Query: 130 CNVWDSM 136
VW M
Sbjct: 310 IRVWQVM 316
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 18 GHTGDVMSLSLA---PDMRTFVSGACDASAKLW-----DIRDGSCKQTFPGHESDINAVT 69
GH G V SL+ + P++ +S + D + W D + G ++F GH + T
Sbjct: 15 GHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+G + S D T RL+D+ + + + SV + ++++G D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKT 130
Query: 130 CNVWDSMKTERAGILAGHDNRVSCLGVT------EDGMAVATGSWDSFLRIWN 176
VW ++K + L GH++ VS + V +D + + + D ++ WN
Sbjct: 131 IKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 11 LGSPAAS--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 68
G P S GH+ V +L D +S + D + +LWD+ G Q F GH+SD+ +V
Sbjct: 54 FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 69 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR----SGRLLLAG 124
+GS D T +++ I+ + H++ + + V + S ++ AG
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 125 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D W+ + + GH++ ++ L + DG +A+ D + +WN
Sbjct: 174 NDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 18 GHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
GH V + + P+ + T +S D K W++ + F GH S+IN +T
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIICGITSVAFSRSGRLLLA----G 124
P+G A+ D L+++ A + AMY+ D + S+AFS + L A G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF----SLAFSPNRYWLAAATATG 259
Query: 125 YDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
F+ + + D ++ E AG + L + DG + G D+ +R+W
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 18 GHTGDVMSLSLA---PDMRTFVSGACDASAKLW-----DIRDGSCKQTFPGHESDINAVT 69
GH G V SL+ + P++ +S + D + W D + G ++F GH + T
Sbjct: 15 GHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+G + S D T RL+D+ + + + SV + ++++G D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKT 130
Query: 130 CNVWDSMKTERAGILAGHDNRVSCLGVT------EDGMAVATGSWDSFLRIWN 176
VW ++K + L GH++ VS + V +D + + + D ++ WN
Sbjct: 131 IKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 11 LGSPAAS--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 68
G P S GH+ V +L D +S + D + +LWD+ G Q F GH+SD+ +V
Sbjct: 48 FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 107
Query: 69 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR----SGRLLLAG 124
+GS D T +++ I+ + H++ + + V + S ++ AG
Sbjct: 108 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 167
Query: 125 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D W+ + + GH++ ++ L + DG +A+ D + +WN
Sbjct: 168 NDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 18 GHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
GH V + + P+ + T +S D K W++ + F GH S+IN +T
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 199
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIICGITSVAFSRSGRLLLA----G 124
P+G A+ D L+++ A + AMY+ D + S+AFS + L A G
Sbjct: 200 PDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF----SLAFSPNRYWLAAATATG 253
Query: 125 YDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
F+ + + D ++ E AG + L + DG + G D+ +R+W
Sbjct: 254 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 308
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-- 75
GH ++ +L+ +PD S D LW++ T + ++ ++ F PN +
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWL 246
Query: 76 --AFATG----SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
A ATG S D + D+R E A YS + S+A+S G+ L AGY D
Sbjct: 247 AAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDNV 303
Query: 130 CNVWDSM 136
VW M
Sbjct: 304 IRVWQVM 310
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 18 GHTGDVMSLSLA---PDMRTFVSGACDASAKLW-----DIRDGSCKQTFPGHESDINAVT 69
GH G V SL+ + P++ +S + D + W D + G ++F GH + T
Sbjct: 9 GHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+G + S D T RL+D+ + + + SV + ++++G D
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKT 124
Query: 130 CNVWDSMKTERAGILAGHDNRVSCLGVT------EDGMAVATGSWDSFLRIWN 176
VW ++K + L GH++ VS + V +D + + + D ++ WN
Sbjct: 125 IKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP 72
SGH+ +V L APD R SG D +W G QTF H+ + AV + P
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 73 ---NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
N A G+ D R++++ + L+ + +C S+ +S + L++G+ F
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FA 262
Query: 130 CN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
N +W + L GH +RV L ++ DG VA+ + D LR+W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 39 ACDASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
A D S LW G Q PG I++V + G A G+ A +L+D++
Sbjct: 42 ALDNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99
Query: 95 QELA-MYSHDNIICGITSVAF-----SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD 148
+ L M SH + ++ ++ SRSG + + D + L+GH
Sbjct: 100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHI---HHHDVR------VAEHHVATLSGHS 150
Query: 149 NRVSCLGVTEDGMAVATGSWDSFLRIW 175
V L DG +A+G D+ + +W
Sbjct: 151 QEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Query: 11 LGSPAAS--GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 68
G P S GH+ V +L D +S + D + +LWD+ G Q F GH+SD+ +V
Sbjct: 54 FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113
Query: 69 TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSR----SGRLLLAG 124
+GS D T +++ I+ + H++ + + V + S ++ AG
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 125 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D W+ + + GH++ ++ L + DG +A+ D + +WN
Sbjct: 174 NDKM-VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 18 GHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
GH V + + P+ + T +S D K W++ + F GH S+IN +T
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIICGITSVAFSRSGRLLLA----G 124
P+G A+ D L+++ A + AMY+ D + S+AFS + L A G
Sbjct: 206 PDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF----SLAFSPNRYWLAAATATG 259
Query: 125 YDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
F+ + + D ++ E AG A + L + DG + G D+ +R+W
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW-- 75
GH ++ +L+ +PD S D LW++ T + ++ ++ F PN +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWL 252
Query: 76 --AFATG----SDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
A ATG S D + D+R E A YS + S+A+S G+ L AGY D
Sbjct: 253 AAATATGIKVFSLDPQYLVDDLRP--EFAGYSAAAEPHAV-SLAWSADGQTLFAGYTDNV 309
Query: 130 CNVWDSM 136
VW M
Sbjct: 310 IRVWQVM 316
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 18 GHTGDVMSLSLA---PDMRTFVSGACDASAKLW-----DIRDGSCKQTFPGHESDINAVT 69
GH G V SL+ + P++ +S + D + W D + G ++F GH + T
Sbjct: 15 GHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+G + S D T RL+D+ + + + SV + ++++G D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRDKT 130
Query: 130 CNVWDSMKTERAGILAGHDNRVSCLGVT------EDGMAVATGSWDSFLRIWN 176
VW ++K + L GH++ VS + V +D + + + D ++ WN
Sbjct: 131 IKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP 72
SGH+ +V L APD R SG D +W G QTF H+ + AV + P
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 73 ---NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
N A G+ D R++++ + L+ + +C S+ +S + L++G+ F
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FA 342
Query: 130 CN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
N +W + L GH +RV L ++ DG VA+ + D LR+W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 39 ACDASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
A D S LW G Q PG I++V + G A G+ A +L+D++
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179
Query: 95 QELA-MYSHDNIICGITSVAF-----SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD 148
+ L M SH + ++ ++ SRSG + + D + L+GH
Sbjct: 180 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHI---HHHDVR------VAEHHVATLSGHS 230
Query: 149 NRVSCLGVTEDGMAVATGSWDSFLRIW 175
V L DG +A+G D+ + +W
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP 72
SGH+ +V L APD R SG D +W G QTF H+ + AV + P
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 73 ---NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
N A G+ D R++++ + L+ + +C S+ +S + L++G+ F
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FA 353
Query: 130 CN---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
N +W + L GH +RV L ++ DG VA+ + D LR+W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 39 ACDASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
A D S LW G Q PG I++V + G A G+ A +L+D++
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPGEY--ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 190
Query: 95 QELA-MYSHDNIICGITSVAF-----SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD 148
+ L M SH + ++ ++ SRSG + + D + L+GH
Sbjct: 191 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHI---HHHDVR------VAEHHVATLSGHS 241
Query: 149 NRVSCLGVTEDGMAVATGSWDSFLRIW 175
V L DG +A+G D+ + +W
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 6 DKSALLGSP--AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES 63
+++ G P A +GH V L+L+ + +S + D + +LWD+R G+ + F GH+S
Sbjct: 60 EQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS 119
Query: 64 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS---RSGRL 120
++ +V F P+ + + +L++I + + + +N ++ V +S +S
Sbjct: 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 121 L--LAGYD-----DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR 173
+ A Y D VW++ R A H++ V+ L ++ +G +ATG D L
Sbjct: 180 VQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 174 IWN 176
IW+
Sbjct: 239 IWD 241
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 27 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATC 86
+ P F S D K+W+ + + TF HES++N ++ PNG ATG D
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 87 RLFDI 91
++DI
Sbjct: 238 LIWDI 242
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD----INAVTFFP 72
H +V LS++P+ + +G D +WDI + T+P E D IN + F P
Sbjct: 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN----LTYPQREFDAGSTINQIAFNP 265
Query: 73 NGWAFATGSDDATCRLFDIRADQELAM-------------YSHDNIICGITSVAFSRSGR 119
A G+D ++F++ + + N C TS+A++ G+
Sbjct: 266 KLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC--TSLAWNALGK 322
Query: 120 LLLAGYDD 127
L AG+ D
Sbjct: 323 KLFAGFTD 330
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 2/160 (1%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GH V+S+ ++ + S + DA +LWD+ +G ++ D + F P+
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
ATG+ +F + + ++ YS D I S+A+S G+ L +G D N++D
Sbjct: 137 LATGTHVGKVNIFGVESGKK--EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ L GH + L + D + T S D +++I++
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 23 VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSD 82
++S++ +PD + SGA D ++DI G T GH I ++TF P+ T SD
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 83 DATCRLFDIR 92
D +++D++
Sbjct: 227 DGYIKIYDVQ 236
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GH + SL+ +PD + V+ + D K++D++ + T GH S + V F P+
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Query: 77 FATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
F + S D + +++D+ + + H + + G V ++ +G +++ DD +++D
Sbjct: 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG---VKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 5/175 (2%)
Query: 6 DKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI 65
DK+ + +GH+ V + L+ D + +SG+ D +LWD+ G + F GH D+
Sbjct: 416 DKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475
Query: 66 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS----HDNIICGITSVAFSRSGRLL 121
+V F + + S D T +L++ + + + H + + + + ++
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV 535
Query: 122 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
A +D VW+ + LAGH VS + V+ DG A+G D + +W+
Sbjct: 536 SASWDK-TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 13 SPAASGHTGDVMSLSLAPD--MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTF 70
S GH V + +P+ T VS + D + K+W++ + + T GH ++ V
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV 569
Query: 71 FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
P+G A+G D L+D+ ++L +++ I ++ FS R L +
Sbjct: 570 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV---IHALCFS-PNRYWLCAATEHGI 625
Query: 131 NVWD-----------------SMKTERAGILAGHDNRVSC--LGVTEDGMAVATGSWDSF 171
+WD + K + +G A + C L + DG + +G D
Sbjct: 626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685
Query: 172 LRIW 175
+R+W
Sbjct: 686 IRVW 689
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 25/197 (12%)
Query: 1 MCDHLDKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 60
+ D ++K LL SGH G V +L A VSG+ D + ++WDI+ G C F G
Sbjct: 146 VYDSINKKFLL---QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEG 201
Query: 61 HESDINA--VTFFPNGWAFATGSDDATCRLFDI-----------RADQELAMYSHDN--- 104
H S + + + N TGS D T ++ + D L ++ +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 105 ---IICG-ITSV-AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED 159
++ G + SV S G ++++G D VWD + + IL+GH +R+ +
Sbjct: 262 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 160 GMAVATGSWDSFLRIWN 176
+ S D+ +RIW+
Sbjct: 322 RKRCISASMDTTIRIWD 338
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGHT + S + + +S + D + ++WD+ +G T GH + + + +
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL--SDKF 364
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD-FNCNVWDS 135
+ + D + R +D Y H N + IT+ F S +L++G ++ FN S
Sbjct: 365 LVSAAADGSIRGWDANDYSRKFSYHHTN-LSAITT--FYVSDNILVSGSENQFNIYNLRS 421
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 174
K A IL D S + +A SFL I
Sbjct: 422 GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 121 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++ G DD V+DS+ + L+GHD V L G+ V+ GS D +R+W+
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWD 189
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH V ++S ++ VSG+ D + +WD+ C GH I + +
Sbjct: 268 GHMASVRTVSGHGNI--VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ S D T R++D+ + + + G+ + S + L++ D + WD+
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL----SDKFLVSAAADGSIRGWDAND 381
Query: 138 TERA 141
R
Sbjct: 382 YSRK 385
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 25/197 (12%)
Query: 1 MCDHLDKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 60
+ D ++K LL SGH G V +L A VSG+ D + ++WDI+ G C F G
Sbjct: 146 VYDSINKKFLL---QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEG 201
Query: 61 HESDINA--VTFFPNGWAFATGSDDATCRLFDI-----------RADQELAMYSHDN--I 105
H S + + + N TGS D T ++ + D L ++ +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 106 ICGI------TSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED 159
G+ + S G ++++G D VWD + + IL+GH +R+ +
Sbjct: 262 FVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 160 GMAVATGSWDSFLRIWN 176
+ S D+ +RIW+
Sbjct: 322 RKRCISASXDTTIRIWD 338
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGHT + S + + +S + D + ++WD+ +G T GH + + + +
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL--SDKF 364
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD-FNCNVWDS 135
+ + D + R +D Y H N + IT+ F S +L++G ++ FN S
Sbjct: 365 LVSAAADGSIRGWDANDYSRKFSYHHTN-LSAITT--FYVSDNILVSGSENQFNIYNLRS 421
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 174
K A IL D S + +A SFL I
Sbjct: 422 GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI 460
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 121 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++ G DD V+DS+ + L+GHD V L G+ V+ GS D +R+W+
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWD 189
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH V ++S ++ VSG+ D + +WD+ C GH I + +
Sbjct: 268 GHXASVRTVSGHGNI--VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 78 ATGSDDATCRLFDIR 92
+ S D T R++D+
Sbjct: 326 ISASXDTTIRIWDLE 340
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 6 DKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI 65
DK+ L +GHTG V+ L D R ++G+ D++ ++WD+ G T H +
Sbjct: 159 DKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Query: 66 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICG----ITSVAFSRSGRLL 121
+ F N T S D + ++D+ + ++ + ++ G + V F + +
Sbjct: 217 LHLRF--NNGMMVTCSKDRSIAVWDMASPTDITL---RRVLVGHRAAVNVVDFD--DKYI 269
Query: 122 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++ D VW++ E L GH ++CL + V +GS D+ +R+W+
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWD 322
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 28 LAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCR 87
L D + VSG D + K+WD CK+ GH + + + + TGS D+T R
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR 196
Query: 88 LFDIRADQELAMYSHDNIIC-GITSVAFSRSGRLLLAGYDDFNCNVWD---SMKTERAGI 143
++D+ + L H C + + F+ +++ D + VWD +
Sbjct: 197 VWDVNTGEMLNTLIHH---CEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 144 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
L GH R + V D + + S D +++WN
Sbjct: 252 LVGH--RAAVNVVDFDDKYIVSASGDRTIKVWN 282
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 33 RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR 92
R VSG+ D + +LWDI G+C + GHE + + F + +G+ D +++D+
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLV 364
Query: 93 ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
A L + +C T V SGR+ +D+F
Sbjct: 365 A--ALDPRAPAGTLCLRTLV--EHSGRVFRLQFDEFQ 397
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 3/164 (1%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
A GH+ V + ++ D + +SG+ D + +LWD+ G+ + F GH D+ +V F +
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 75 WAFATGSDDATCRLFDIRADQELAMY--SHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
+GS D T +L++ + + SH + + S + ++ G+D V
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKV 199
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
W+ + GH ++ + V+ DG A+G D +W+
Sbjct: 200 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GHTG + +++++PD SG D A LWD+ +G T G + INA+ F PN +
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWL 271
Query: 78 --ATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN 131
ATG D ++ QE+ S TS+A+S G+ L AGY D
Sbjct: 272 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 132 VWD 134
VW
Sbjct: 332 VWQ 334
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFV-SGACDASAKLWDI-RD----GSCKQTFPGHESDINAVTFF 71
GH G V ++ P + S + D + +W + RD G ++ GH ++ V
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95
Query: 72 PNGWAFATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF 128
+G +GS D T RL+D+ + ++ D + SVAFS R +++G D
Sbjct: 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-----VLSVAFSSDNRQIVSGSRDK 150
Query: 129 NCNVWDSMKTERAGIL-AGHDNRVSCLGVTED--GMAVATGSWDSFLRIWN 176
+W+++ + + H VSC+ + + + + WD +++WN
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 60/214 (28%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP------------------ 59
GHT DV+S++ + D R VSG+ D + KLW+ G CK T
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSS 184
Query: 60 ----------------------------GHESDINAVTFFPNGWAFATGSDDATCRLFDI 91
GH +N VT P+G A+G D L+D+
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Query: 92 RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW--------DSMKTERAGI 143
+ L +I I ++ FS R L + +W D +K E
Sbjct: 245 NEGKHLYTLDGGDI---INALCFS-PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 300
Query: 144 LA-GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + + L + DG + G D+ +R+W
Sbjct: 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 3/164 (1%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
A GH+ V + ++ D + +SG+ D + +LWD+ G+ + F GH D+ +V F +
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 75 WAFATGSDDATCRLFDIRADQELAMY--SHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
+GS D T +L++ + + SH + + S + ++ G+D V
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKV 176
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
W+ + GH ++ + V+ DG A+G D +W+
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GHTG + +++++PD SG D A LWD+ +G T G + INA+ F PN +
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWL 248
Query: 78 --ATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN 131
ATG D ++ QE+ S TS+A+S G+ L AGY D
Sbjct: 249 CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 132 VWD 134
VW
Sbjct: 309 VWQ 311
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFV-SGACDASAKLWDI-RD----GSCKQTFPGHESDINAVTFF 71
GH G V ++ P + S + D + +W + RD G ++ GH ++ V
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 72
Query: 72 PNGWAFATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDF 128
+G +GS D T RL+D+ + ++ D + SVAFS R +++G D
Sbjct: 73 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-----VLSVAFSSDNRQIVSGSRDK 127
Query: 129 NCNVWDSMKTERAGIL-AGHDNRVSCLGVTED--GMAVATGSWDSFLRIWN 176
+W+++ + + H VSC+ + + + + WD +++WN
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 60/214 (28%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP------------------ 59
GHT DV+S++ + D R VSG+ D + KLW+ G CK T
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSS 161
Query: 60 ----------------------------GHESDINAVTFFPNGWAFATGSDDATCRLFDI 91
GH +N VT P+G A+G D L+D+
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Query: 92 RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW--------DSMKTERAGI 143
+ L +I I ++ FS R L + +W D +K E
Sbjct: 222 NEGKHLYTLDGGDI---INALCFS-PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIST 277
Query: 144 LA-GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + + L + DG + G D+ +R+W
Sbjct: 278 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 3/163 (1%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNGW 75
H + S+++ P +SG+ D + KLW+ + + +QTF GHE + V F P
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 76 A-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ FA+G D T +++ + ++ + + ++ DD +W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D L GH + VS + +GS D L+IWN
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 17 SGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTF-PGHESDINAVTFF--P 72
GH VM ++ P D TF SG D + K+W + + T G E +N V ++ P
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 73 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
+ T SDD T +++D + +A + + + ++ F + ++++G +D +
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDG 160
W+S + L R C+ G
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%)
Query: 54 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA 113
K+TF + + F P T L++ E+ S + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGK 62
Query: 114 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR 173
F ++ G DDF V++ E+ H + + + V V +GS D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 174 IWN 176
+WN
Sbjct: 123 LWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 3/163 (1%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFPNGW 75
H + S+++ P +SG+ D + KLW+ + + +QTF GHE + V F P
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 76 A-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
+ FA+G D T +++ + ++ + + ++ DD +W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D L GH + VS + +GS D L+IWN
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 17 SGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTF-PGHESDINAVTFF--P 72
GH VM ++ P D TF SG D + K+W + + T G E +N V ++ P
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP 196
Query: 73 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
+ T SDD T +++D + +A + + + ++ F + ++++G +D +
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVA--TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDG 160
W+S + L R C+ G
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTG 282
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%)
Query: 54 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA 113
K+TF + + F P T L++ E+ S + +
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGK 62
Query: 114 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLR 173
F ++ G DDF V++ E+ H + + + V V +GS D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 174 IWN 176
+WN
Sbjct: 123 LWN 125
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 8 SALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR--DGSCKQTFPGHESDI 65
S + S + GH V ++ +P S + DA+ +W D C T GHE+++
Sbjct: 49 SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV 108
Query: 66 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI-ICGITSVAFSRSGRLLL-A 123
+V + P+G AT S D + ++++ + E S N + V + S LL A
Sbjct: 109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168
Query: 124 GYDDFNCNVWDSMKTERA--------GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
YD D++K R L GH++ V L G +A+ S D +RIW
Sbjct: 169 SYD-------DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG---SCKQTFPGHESDINAVTFFPN 73
GH +V S++ AP + + D S +W++ + C H D+ V + P+
Sbjct: 102 EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161
Query: 74 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
A+ S D T +L+ D + + + + S+AF SG+ L + DD +W
Sbjct: 162 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Query: 134 DSMKTERAGILAGHDNRVSCLG 155
L G++ V+C G
Sbjct: 222 RQY-------LPGNEQGVACSG 236
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.1 bits (118), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFP-NGW 75
H + S+++ P +SG+ D + KLW+ + + +QTF GHE + V F P +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 76 AFATGSDDATCRLFDI-RADQELAMYSHDNIICGITSVAFSR--SGRLLLAGYDDFNCNV 132
FA+G D T +++ + ++ + + G+ V + ++ DD +
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
WD L GH + VS + +GS D L+IWN
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 18 GHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTF-PGHESDINAVTFF--PN 73
GH VM ++ P D TF SG D + K+W + + T G E +N V ++ P+
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 74 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
T SDD T +++D + +A + + + ++ F + ++++G +D +W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVA--TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 134 DS 135
+S
Sbjct: 256 NS 257
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 121 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++ G DDF V++ E+ H + + + V V +GS D +++WN
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 9e-07, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTFFP-NGW 75
H + S+++ P +SG+ D + KLW+ + + +QTF GHE + V F P +
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 76 AFATGSDDATCRLFDI-RADQELAMYSHDNIICGITSVAFSR--SGRLLLAGYDDFNCNV 132
FA+G D T +++ + ++ + + G+ V + ++ DD +
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQER--GVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
WD L GH + VS + +GS D L+IWN
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 18 GHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQTF-PGHESDINAVTFF--PN 73
GH VM ++ P D TF SG D + K+W + + T G E +N V ++ P+
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD 197
Query: 74 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
T SDD T +++D + +A + + + ++ F + ++++G +D +W
Sbjct: 198 KPYMITASDDLTIKIWDYQTKSCVA--TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 134 DS 135
+S
Sbjct: 256 NS 257
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 121 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++ G DDF V++ E+ H + + + V V +GS D +++WN
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
+G+ D KLWD+ C+ T GH + +N F P+ A+ S D T RL+D+R+
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Query: 95 QE 96
E
Sbjct: 776 NE 777
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HT V + D + S D + +++ G HE ++ F + A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 79 TGSDDATCRLFDIRADQELAMY-SHDNII--CGITSVAFSRSGRLLLA-GYDDFNCNVWD 134
T S D +++D + + Y H + C T+ +S LLLA G +DF +WD
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN----KSNHLLLATGSNDFFLKLWD 729
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ E + GH N V+ + D +A+ S D LR+W+
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Score = 43.1 bits (100), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H G V+S +++ D F S + D +AK+W S GH + F +G A
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143
Query: 79 TGSDDATCRLFDIRADQEL 97
TG D+ R++++ Q L
Sbjct: 1144 TGDDNGEIRIWNVSDGQLL 1162
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG--- 74
GH V + D +T +S + D+ ++W+ + G H+ + +
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSRLL 1059
Query: 75 -WAFATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
W+F D T +++++ R +++ + + C I+S A S + D
Sbjct: 1060 SWSF-----DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS-----STSADKTA 1109
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+W L GH+ V C + DG+ +ATG + +RIWN
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG------SCKQTFPGHESDINAVTFF 71
GHT V +PD S + D + +LWD+R + K+ F E V
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 72 PNGWAFATGSDDATCR------LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY 125
+++ D LFDI LA H I FS L +
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 126 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
+ +W+ + GH + V + + DG + T S D +R+W
Sbjct: 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 35/195 (17%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH + +P V +LW+I GH S ++ V F P+G +
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 77 FATGSDDATCRLFDIRA------------------DQELAMYSHDNI-----ICG----- 108
F T SDD T R+++ + + E + + DNI I G
Sbjct: 897 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956
Query: 109 -------ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM 161
++ S + G +D + + GH V + T DG
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 162 AVATGSWDSFLRIWN 176
+ + S DS +++WN
Sbjct: 1017 TLISSSEDSVIQVWN 1031
Score = 30.4 bits (67), Expect = 0.57, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H G V + +PD +T VS K W++ G QTF + +++ + P+ +
Sbjct: 1177 HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1234
Query: 79 T 79
T
Sbjct: 1235 T 1235
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
+G+ D KLWD+ C+ T GH + +N F P+ A+ S D T RL+D+R+
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 95 QE 96
E
Sbjct: 783 NE 784
Score = 47.0 bits (110), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HT V + D + S D + +++ G HE ++ F + A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 79 TGSDDATCRLFDIRADQELAMY-SHDNII--CGITSVAFSRSGRLLLA-GYDDFNCNVWD 134
T S D +++D + + Y H + C T+ +S LLLA G +DF +WD
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN----KSNHLLLATGSNDFFLKLWD 736
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ E + GH N V+ + D +A+ S D LR+W+
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Score = 43.1 bits (100), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H G V+S +++ D F S + D +AK+W S GH + F +G A
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1150
Query: 79 TGSDDATCRLFDIRADQEL 97
TG D+ R++++ Q L
Sbjct: 1151 TGDDNGEIRIWNVSDGQLL 1169
Score = 42.0 bits (97), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 18/166 (10%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG--- 74
GH V + D +T +S + D+ ++W+ + G H+ + +
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSRLL 1066
Query: 75 -WAFATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 130
W+F D T +++++ R +++ + + C I+S A S + D
Sbjct: 1067 SWSF-----DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS-----STSADKTA 1116
Query: 131 NVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+W L GH+ V C + DG+ +ATG + +RIWN
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 38.1 bits (87), Expect = 0.003, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 13/170 (7%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG------SCKQTFPGHESDINAVTFF 71
GHT V +PD S + D + +LWD+R + K+ F E V
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 72 PNGWAFATGSDDATCR------LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY 125
+++ D LFDI LA H I FS L +
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 126 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
+ +W+ + GH + V + + DG + T S D +R+W
Sbjct: 867 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 36.6 bits (83), Expect = 0.007, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 35/195 (17%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH + +P V +LW+I GH S ++ V F P+G +
Sbjct: 844 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 903
Query: 77 FATGSDDATCRLFDIRA------------------DQELAMYSHDNI-----ICG----- 108
F T SDD T R+++ + + E + + DNI I G
Sbjct: 904 FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 109 -------ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM 161
++ S + G +D + + GH V + T DG
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 162 AVATGSWDSFLRIWN 176
+ + S DS +++WN
Sbjct: 1024 TLISSSEDSVIQVWN 1038
Score = 30.4 bits (67), Expect = 0.58, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H G V + +PD +T VS K W++ G QTF + +++ + P+ +
Sbjct: 1184 HGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1241
Query: 79 T 79
T
Sbjct: 1242 T 1242
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 20/174 (11%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GHTG + S+ + + V+G+ D S KLWD+ +G C T+ + V F P G F
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYF 130
Query: 78 ATGSDDA-----TCRLFDIRAD---QELAMYSHDNIICGIT-------SVA-FSRSGRLL 121
D+ + +++I D EL S + I IT +VA +S G+ +
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 122 LAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD--SFL 172
+AG+ D + +D S E + H+ +S + + D T S D SFL
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 61 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL 120
HE I+ + F P+ F T S D L D+ Q L Y D C + + +
Sbjct: 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEF 273
Query: 121 LLAG--------------YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 166
++ G F + + E G + GH ++ + ++ G + A+G
Sbjct: 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333
Query: 167 SWDSFLRI 174
D F+R+
Sbjct: 334 GEDGFIRL 341
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 109 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW 168
+T V +++ G LL + D + +VW S+ ER G L GH + + V TGS
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 169 DSFLRIWN 176
D +++W+
Sbjct: 95 DYSIKLWD 102
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 60 GHESDINAVTFFPNGWAFATGSDDATCRL-------FDIRADQELAMYSHDNI 105
GH +N V P G ++A+G +D RL FD + D E A + +++
Sbjct: 313 GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAAEAKEHM 365
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+GH + + + S + D+SA +W +G T GH I ++
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN 131
TGS D + +L+D+ Q +A + + V FS G LA D+ N
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWKSP---VPVKRVEFSPCGNYFLAILDNVMKN 140
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%)
Query: 5 LDKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD 64
LD + L H ++ L P +S + D K+W ++DGS +T GH +
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183
Query: 65 INAVTFFPNGWAFATGSDDATCRLFD 90
+ + G + S D T RL++
Sbjct: 184 VTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 32 MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 91
MR F+ G + K+ D ++ H S+I + FFP+G A + S D +++ +
Sbjct: 109 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168
Query: 92 R-ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ + H +T +A GR +L+ D +W+
Sbjct: 169 KDGSNPRTLIGHR---ATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 106 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 165
+ IT + F SG L++ D +W L GH V+ + + + G V +
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 198
Query: 166 GSWDSFLRIW 175
S D +R+W
Sbjct: 199 ASLDGTIRLW 208
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%)
Query: 5 LDKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESD 64
LD + L H ++ L P +S + D K+W ++DGS +T GH +
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 180
Query: 65 INAVTFFPNGWAFATGSDDATCRLFD 90
+ + G + S D T RL++
Sbjct: 181 VTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 32 MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 91
MR F+ G + K+ D ++ H S+I + FFP+G A + S D +++ +
Sbjct: 106 MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 165
Query: 92 R-ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ + H +T +A GR +L+ D +W+
Sbjct: 166 KDGSNPRTLIGHR---ATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 106 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 165
+ IT + F SG L++ D +W L GH V+ + + + G V +
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 195
Query: 166 GSWDSFLRIW 175
S D +R+W
Sbjct: 196 ASLDGTIRLW 205
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 4/151 (2%)
Query: 25 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 84
+L+++PD + S D + +WD+ + + + F GH + + +G TG D
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 85 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL 144
T R +D+R ++L + + I S+ + +G L G + N V K ++ L
Sbjct: 206 TVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L 261
Query: 145 AGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
H++ V L G + D+ L W
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 68/170 (40%), Gaps = 20/170 (11%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV---------- 68
H V +++++ R +G K+WDI + PG++S ++ +
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDI-------SHPGNKSPVSQLDCLNRDNYIR 101
Query: 69 --TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD 126
P+G G + +T ++D+ A + ++A S ++ +
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161
Query: 127 DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D N VWD GH + SC+ ++ DG + TG D+ +R W+
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GHT + ++ D +G D + + WD+R+G Q S I ++ + P G
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEW 238
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A G + + + + + ++ H++ + S+ F+ G+ ++ D N W +
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESC---VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ +SC ++ D + TGS D ++
Sbjct: 296 YGASIFQSKESSSVLSC-DISVDDKYIVTGSGDKKATVYE 334
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP---NG 74
GH+ +V L+ D SG D ++WD R K T H + + AV + P N
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNL 274
Query: 75 WAFATGSDDATCRLFDIRADQELAMYSHDNIICG--ITSVAFSRSGRLLLA--GYDDFNC 130
A G+ D ++ + + + G +TS+ +S + +++ G+ D N
Sbjct: 275 LATGGGTMDKQIHFWNAATGARV-----NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 131 NVW---DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
++W S T++ I A HD RV ++ DG ++T + D L+ W
Sbjct: 330 SIWSYSSSGLTKQVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-SCKQTFPGHESDINAVTF 70
H V+ +L+PD R + A D + K W + DG K+ P ++ +++T
Sbjct: 347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + G L GH + V L DG+ +A+G D+ ++IW+
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.7 bits (104), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
+G+ D KLWD+ C+ T GH + +N F P+ A+ S D T +L+D +
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 95 QE 96
E
Sbjct: 782 NE 783
Score = 41.2 bits (95), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 8 SALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINA 67
S LLG +GH + +P V +LW+ S GH S ++
Sbjct: 835 SGLLGE-IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHG 893
Query: 68 VTFFPNGWAFATGSDDATCRLFDIR 92
V F P+G +F T SDD T RL++ +
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 59/158 (37%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HT V + D + S D + +++ G HE ++ F + A
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
T S D ++++ + + Y + S LL G D +WD +
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
E + GH N V+ + D +A+ S D L++W+
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 14/163 (8%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG---- 74
H V + D +T +S + DA ++W+ + C GH+ + N
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLS 1066
Query: 75 WAFATGSDDATCRLFDI-RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
W+F D T ++++I ++E H + S S + D +W
Sbjct: 1067 WSF-----DGTVKVWNIITGNKEKDFVCHQGTV---LSCDISHDATKFSSTSADKTAKIW 1118
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
L GH+ V C + D +ATG + +RIWN
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 38.5 bits (88), Expect = 0.002, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 60/178 (33%), Gaps = 29/178 (16%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN---- 73
GHT V +PD + S + D + KLWD T IN FF N
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWD-------ATSANERKSINVKQFFLNLEDP 799
Query: 74 -----------GWAFATGSDDATCR-----LFDIRADQELAMYSHDNIICGITSVAFSRS 117
W+ A G+ LFDI L H I FS
Sbjct: 800 QEDMEVIVKCCSWS-ADGARIMVAAKNKIFLFDIHTSGLLGEI-HTGHHSTIQYCDFSPQ 857
Query: 118 GRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
L + + +W++ + GH + V + + DG + T S D +R+W
Sbjct: 858 NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H G V+S ++ D F S + D +AK+W GH + F + A
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLA 1149
Query: 79 TGSDDATCRLFDIRADQEL---AMYSHDNIICG---ITSVAFSRSGRLLLAG 124
TG D+ R++++ + L A S + +T + FS G++L++
Sbjct: 1150 TGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 29/140 (20%)
Query: 38 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQE 96
G +L D++ GSC GH +I AV++ P + AT S D+ +L+D+R
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR---- 217
Query: 97 LAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV 156
R+ L+ D N S E A H+ +V+ L
Sbjct: 218 -------------------RASGCLIT-LDQHNGK--KSQAVESAN--TAHNGKVNGLCF 253
Query: 157 TEDGMAVATGSWDSFLRIWN 176
T DG+ + T D+ +R+WN
Sbjct: 254 TSDGLHLLTVGTDNRMRLWN 273
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 22/180 (12%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGS-CKQTF---------------P 59
GH +++++S +P ++ A D+ KLWD+R S C T
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 60 GHESDINAVTFFPNGWAFATGSDDATCRLFD-IRADQELAMYSH--DNIICGIT-SVAFS 115
H +N + F +G T D RL++ + L Y +N G+ +V+
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 116 RSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
S + Y V+ E+ +L GH V C + + +GS D + W
Sbjct: 303 CSSEFVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 6 DKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP------ 59
D L+ + H + S++ P +G+ D++ +W ++ S +TF
Sbjct: 44 DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAI 102
Query: 60 --GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE-------LAMYSHDNIICGIT 110
GHE+++ V + +G+ AT S D + +++ E L +S D +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-----VK 157
Query: 111 SVAFSRSGRLLLAGYDDFNCNVWDSMKT--ERAGILAGHDNRV--SCLGVTEDGMAVATG 166
V + S LL + D +W E +L GH+ V S TE + +G
Sbjct: 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217
Query: 167 SWDSFLRIWN 176
S DS +R+W
Sbjct: 218 SDDSTVRVWK 227
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 71 FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII--CGITSVAFSRSGRLLLAGYDDF 128
F G ATGS D +L ++ D + D I SVA+ LL AG D
Sbjct: 22 FSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80
Query: 129 NCNVW-------DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++W + + + I+ GH+N V + + DG +AT S D + IW
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG--SCKQTFPGHESDINAVTFFPNGWA 76
H+ DV + P S + D + ++W D C GHE + + F
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211
Query: 77 FA--TGSDDATCRLFDIRADQE 96
F +GSDD+T R++ D E
Sbjct: 212 FRLCSGSDDSTVRVWKYMGDDE 233
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 35 FVSGACDASAKLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFD 90
F S A D +WD R+ + + T H +++N ++F P + + ATGS D T L+D
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 91 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 137
+R + +L ++S ++ I V +S +LA D +VWD K
Sbjct: 307 LR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 35 FVSGACDASAKLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFD 90
F S A D +WD R+ + + T H +++N ++F P + + ATGS D T L+D
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 91 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 137
+R + +L ++S ++ I V +S +LA D +VWD K
Sbjct: 309 LR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 35 FVSGACDASAKLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFD 90
F S A D +WD R+ + + T H +++N ++F P + + ATGS D T L+D
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 91 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 137
+R + +L ++S ++ I V +S +LA D +VWD K
Sbjct: 311 LR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 17 SGHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQ---TFPGHESDINAVTFFP 72
+GHT V +S + F S A D +WD R + + + H +++N ++F P
Sbjct: 224 TGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP 283
Query: 73 -NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNC 130
+ + ATGS D T L+D+R + +L ++S ++ I V +S +LA D
Sbjct: 284 YSEFILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 131 NVWDSMK 137
NVWD K
Sbjct: 343 NVWDLSK 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 35 FVSGACDASAKLWDIRDGSCKQT---FPGHESDINAVTFFP-NGWAFATGSDDATCRLFD 90
F S A D +WD R + + H +++N ++F P + + ATGS D T L+D
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 91 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK------------ 137
+R + +L +++ ++ I V +S +LA D NVWD K
Sbjct: 305 LR-NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 138 --TERAGILAGHDNRVSCLG-VTEDGMAVATGSWDSFLRIWN 176
E I GH ++S + + + S D+ ++IW
Sbjct: 364 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 35 FVSGACDASAKLWDIRDGSCKQT---FPGHESDINAVTFFP-NGWAFATGSDDATCRLFD 90
F S A D +WD R + + H +++N ++F P + + ATGS D T L+D
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 91 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 137
+R + +L +++ ++ I V +S +LA D NVWD K
Sbjct: 305 LR-NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF--P 72
A HTG V+ + + D + +CD +AK+WD+ Q H++ + + + P
Sbjct: 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP 139
Query: 73 NGWAFATGSDDATCRLFDIRADQELAMYSHD------NIICGITSVAFSRSGRLLLAGYD 126
N TGS D T + +D R+ + + ++I + VA + G ++
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQ--- 196
Query: 127 DFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 166
++ +E I + ++ C+ + +D TG
Sbjct: 197 ------LENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG 230
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 109 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLG--VTEDGMAVATG 166
+ V +S G + D +WD + + +A +A HD V + + V TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 167 SWDSFLRIWN 176
SWD L+ W+
Sbjct: 148 SWDKTLKFWD 157
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VTFFPNGWA 76
H G V + APD V+ D +A +W ++ + K T + A V + PN
Sbjct: 51 HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 77 FATGSDDATCRL--FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
FA GS + F+ D + + I + S+ + + LL AG DF C ++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 135 SMKTE 139
+ E
Sbjct: 171 AYIKE 175
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VTFFPNGWA 76
H G V + APD V+ D +A +W ++ + K T + A V + PN
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 77 FATGSDDATCRL--FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
FA GS + F+ D + + I + S+ + + LL AG DF C ++
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 135 SMKTE 139
+ E
Sbjct: 171 AYIKE 175
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 5 LDKSALLGSP-AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES 63
L+K +LL + A H V +LS+ D VSG D S K+WD+ + +++ H S
Sbjct: 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS 182
Query: 64 DINAVTFFP-NGWAFATGSDDATCRLFDIRADQ 95
++N V P F + +D L+D R +
Sbjct: 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 81 SDDATCRLFDIRADQEL-----AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
SD L++I + L A Y HD+I+ +++ G ++G DF+ VWD
Sbjct: 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIV---KTLSVFSDGTQAVSGGKDFSVKVWDL 168
Query: 136 MKTERAGILAGHDNRVSCL 154
+ H + V+C+
Sbjct: 169 SQKAVLKSYNAHSSEVNCV 187
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 108 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI----LAGHDNRVSCLGVTEDGMAV 163
G+T VA+ +L+A D +W+ ++ E + HD+ V L V DG
Sbjct: 96 GVTDVAWVSEKGILVAS-DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA 154
Query: 164 ATGSWDSFLRIWN 176
+G D +++W+
Sbjct: 155 VSGGKDFSVKVWD 167
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SG DV+ D F+S + D KL D G +T+ GHES + + PNG
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDI 239
Query: 77 FATGSDDATCRLF 89
+ G +D T R++
Sbjct: 240 VSCG-EDRTVRIW 251
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH V + L P+ VS D + ++W +GS KQ I +V NG
Sbjct: 223 GHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNG-DI 280
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICG 108
GS D R+F QE + ++ ++ I G
Sbjct: 281 IVGSSDNLVRIF----SQEKSRWASEDEIKG 307
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 78 ATGSDDATCRLFDIRADQEL--AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN---V 132
A+ S D T RL+ + DQ L +Y+ + SV + LLL G D N +
Sbjct: 33 ASVSRDGTVRLWS-KDDQWLGTVVYTGQGFL---NSVCYDSEKELLLFGGKDTXINGVPL 88
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + + L GH V L +DG+ V +GSWD ++W
Sbjct: 89 FATSGEDPLYTLIGHQGNVCSLSF-QDGV-VISGSWDKTAKVWK 130
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD---- 90
+SG+ D + +++ K TF H +++V + P+G FA+ D T L++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 91 ----IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD--SMKTERAGIL 144
+ D L +H + G+T +S G + + D +W+ ++K E+ I
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIASASADKTIKIWNVATLKVEKT-IP 278
Query: 145 AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
G LG+ A+ + S + F+ N
Sbjct: 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVN 310
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 78 ATGSDDATCRLFDIR--ADQELAMYSHDNIICGITSVAFSRSGRLLLA---GYDDFNCNV 132
A G D+ ++ + + E+ H ITSVAFS +G L+A +V
Sbjct: 464 AVGGQDSKVHVYKLSGASVSEVKTIVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSV 520
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++ + H +V+C+ + D + +ATGS D+ + +WN
Sbjct: 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFPNGWAF 77
H+G V L+ +PD S + D + K+W++ ++T P G + + A
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 78 ATGSDDATCRLFDIR-ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-S 135
+ S + + + Y H+ I ++S S G+ L + + + N WD S
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSS---SADGKTLFSADAEGHINSWDIS 354
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 174
H ++ + T G + T SWD L++
Sbjct: 355 TGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKV 392
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-------GHESDINAVTFF 71
HT V S+ PD F S D + L++ DG+ F H + +T+
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 72 PNGWAFATGSDDATCRLFDI 91
P+G A+ S D T +++++
Sbjct: 249 PDGTKIASASADKTIKIWNV 268
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG-HESDINAVTFFPNGWA 76
GH + +LS + D +T S + WDI G + FP H + I + G
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 77 FATGSDD 83
F DD
Sbjct: 382 FTVSWDD 388
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
GH G + L + +S + D + ++W +G+ + F GH I + ++ +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI 304
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA--FSRSGRLLLAGYDDFNCNVWDS 135
+ S D + RL+ ++ + LA+ +I+ G+ A S+ G+ + D NV+D
Sbjct: 305 SC-SMDGSVRLWSLKQNTLLAL----SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359
Query: 136 MK 137
K
Sbjct: 360 KK 361
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 149 NRVSCLGVTEDGMAVATGSWDSFLRIWN 176
N+V+CL + DG ++ TG + LR+WN
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN 136
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 19 HTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTF---PGHESDINAVTFFPNG 74
H V ++L P F++ A D + K+WD+R K +F H +NA F P+G
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 75 WAFATGSDDATCRLFDIRA-DQELAMYSHDNI----ICGITSVAFSRSGRLLLAGYDDFN 129
T + R++ D L + H + + I + R +++ Y D N
Sbjct: 310 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN 369
Query: 130 CNVWDSMKTERAGILAGHDNRVSC 153
+ + G+ ++ C
Sbjct: 370 FKSCTPYELRTIDVFDGNSGKMMC 393
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 19 HTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTF---PGHESDINAVTFFPNG 74
H V ++L P F++ A D + K+WD+R K +F H +NA F P+G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 75 WAFATGSDDATCRLFDIRA-DQELAMYSHDNI----ICGITSVAFSRSGRLLLAGYDDFN 129
T + R++ D L + H + + I + R +++ Y D N
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN 368
Query: 130 CNVWDSMKTERAGILAGHDNRVSC 153
+ + G+ ++ C
Sbjct: 369 FKSCTPYELRTIDVFDGNSGKMMC 392
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 9/144 (6%)
Query: 19 HTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTF---PGHESDINAVTFFPNG 74
H V ++L P F++ A D + K+WD+R K +F H +NA F P+G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 75 WAFATGSDDATCRLFDIRA-DQELAMYSHDNI----ICGITSVAFSRSGRLLLAGYDDFN 129
T + R++ D L + H + + I + R +++ Y D N
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN 368
Query: 130 CNVWDSMKTERAGILAGHDNRVSC 153
+ + G+ ++ C
Sbjct: 369 FKSCTPYELRTIDVFDGNSGKMMC 392
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 77 FATGSDDATCRLFDIRADQEL----AMYSHDNIICGITSVAFSRSGRLLLAGYDD--FNC 130
ATG ++ T ++ ++ + L + +S N I SV FS G LL +D F C
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 131 -NVWDSMKTERAGILA-------------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++++ ER G L+ H + V L + G + + WD LR W+
Sbjct: 270 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH------ESDINA---- 67
H+ VMSLS T S D + WD++ T H E DI A
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 358
Query: 68 -----------VTFFPNGWAFATGSD 82
V F GW G+D
Sbjct: 359 GDSLAEPGVFDVKFLKKGWRSGMGAD 384
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 77 FATGSDDATCRLFDIRADQEL----AMYSHDNIICGITSVAFSRSGRLLLAGYDD--FNC 130
ATG ++ T ++ ++ + L + +S N I SV FS G LL +D F C
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 131 -NVWDSMKTERAGILA-------------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++++ ER G L+ H + V L + G + + WD LR W+
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH------ESDINA---- 67
H+ VMSLS T S D + WD++ T H E DI A
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 68 -----------VTFFPNGWAFATGSD 82
V F GW G+D
Sbjct: 349 GDSLAEPGVFDVKFLKKGWRSGMGAD 374
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGAC--DASAKLWDIRDGSCKQTFP--GHESDINAVTFFPN 73
GH G V ++ A M + +C D +W +G+ +++ GH+S +N+V + P+
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 74 --GWAFATGSDDATCRLFDIRADQELAMYSHDN 104
G A GS D L + + + +N
Sbjct: 115 DYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 32 MRTFVSGACDASAKLW-DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 90
++ F SG CD KLW + DG K+ E + A + + A+A T +
Sbjct: 179 IKRFASGGCDNLIKLWKEEEDGQWKE-----EQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233
Query: 91 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA--GHD 148
D + +++ D+ + + + S +LL FN VW + A ILA G D
Sbjct: 234 CSQDGRVFIWTCDD------ASSNTWSPKLL----HKFNDVVWHVSWSITANILAVSGGD 283
Query: 149 NRVSCLGVTEDGMAV 163
N+V+ + DG V
Sbjct: 284 NKVTLWKESVDGQWV 298
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 61 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA---MYSHDNIICGITSVAFSRS 117
HE I+ G AT S D + ++FD+R ++ + H+ + + + A
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV-AWAHPMY 70
Query: 118 GRLLLAGYDDFNCNVW--DSMKTERAGILAGHDNRVS--CLGVTEDGMAVATGSWDSFLR 173
G +L + D +W ++ E++ AGHD+ V+ C + G+ +A GS D +
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 174 I 174
+
Sbjct: 131 L 131
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 14 PAASGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQ-------TFPGHESDI 65
P GHT V+ ++ P + SG+ D + +W+I DG T GH +
Sbjct: 75 PLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134
Query: 66 NAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG 124
V + P + D ++D+ + D I SV +SR G L+
Sbjct: 135 GIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Query: 125 YDDFNCNVWDSMK 137
D V + K
Sbjct: 195 CRDKRVRVIEPRK 207
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 14 PAASGHTGDVMSLSLAP-DMRTFVSGACDASAKLWDIRDGSCKQ-------TFPGHESDI 65
P GHT V+ ++ P + SG+ D + +W+I DG T GH +
Sbjct: 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134
Query: 66 NAVTFFPNGW-AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG 124
V + P + D ++D+ + D I SV +SR G L+
Sbjct: 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Query: 125 YDDFNCNVWDSMK 137
D V + K
Sbjct: 195 CRDKRVRVIEPRK 207
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 37 SGACDASAKLWDIRDGSCKQTFPG---HESDINAVTFFP 72
+ + DA+ KLWD+R+ K ++ HE +NA F P
Sbjct: 222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 61 HESDINAVTFFPN-GWAFATGSDDATCRLFDIR 92
H++ + F P W AT S DAT +L+D+R
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 37 SGACDASAKLWDIRDGSCKQTFPG---HESDINAVTFFP 72
+ + DA+ KLWD+R+ K ++ HE +NA F P
Sbjct: 221 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 61 HESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMY 100
H++ + F P W AT S DAT +L+D+R ++ Y
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 242
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 79 TGSDDATCRLFDIRADQELAM-----YSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
SD L+++ ++ L + Y HD+I+ ++V+ SG ++G D VW
Sbjct: 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIV---STVSVLSSGTQAVSGSKDICIKVW 154
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAV-ATGSWDSFLRIWN 176
D + H +V+C+ + +V + S D+ + +W+
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 36 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRAD 94
VSG+ D K+WD+ ++ H + + V P+ F + S+D L+D R
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 95 Q 95
+
Sbjct: 203 K 203
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 29 APDMRTFVSGACDASAKLWDIRDG----SCKQTFPGHESDINAVTFFPNGW-----AFAT 79
AP++ V+G+ D + K+WD R + + G F N +
Sbjct: 129 APEI---VTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185
Query: 80 GSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRS 117
G D+ +LFD+R +A+ NI G+ S+ F R
Sbjct: 186 GYDNGDIKLFDLR---NMALRWETNIKNGVCSLEFDRK 220
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 21 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN----AVTFFPNGWA 76
G + +LS D + F + DA+ ++WD+ C Q + + + V NG
Sbjct: 254 GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW--D 134
+ S D T +++ D+ L S N GIT++ + L++G D W
Sbjct: 313 ISL-SLDGTLNFYELGHDEVLKTISGHNK--GITALTVNP----LISGSYDGRIMEWSSS 365
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 174
SM + + ++ DN ++ SWD L++
Sbjct: 366 SMHQDHSNLIVSLDN--------SKAQEYSSISWDDTLKV 397
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 79 TGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFSRSGRLL 121
TG D + RL D++A Q+ A+Y DN G SV + G++L
Sbjct: 823 TGKVDVSQRLTDLKAGQKYALYVGVDNRSTGDASVTVTSGGKVL 866
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 31 DMRTFVSGACDASAKLW----DIRDGSCKQTFPGHESDINAVTFFPNGW---AFATGSDD 83
+ R FV+G D K+W D + + T GH + V + P A+ S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 84 ATCRLFDIRADQ---ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
TC ++ +Q + + + + ++S SG +L D +W
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 31 DMRTFVSGACDASAKLW----DIRDGSCKQTFPGHESDINAVTFFPNGW---AFATGSDD 83
+ R FV+G D K+W D + + T GH + V + P A+ S D
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Query: 84 ATCRLFDIRADQ---ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
TC ++ +Q + + + + ++S SG +L D +W
Sbjct: 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 31 DMRTFVSGACDASAKLW----DIRDGSCKQTFPGHESDINAVTFFPNGW---AFATGSDD 83
+ R FV+G D K+W D + + T GH + V + P A+ S D
Sbjct: 171 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Query: 84 ATCRLFDIRADQ---ELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
TC ++ +Q + + + + ++S SG +L D +W
Sbjct: 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,498,846
Number of Sequences: 62578
Number of extensions: 203463
Number of successful extensions: 1210
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 355
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)