RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15417
(176 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 132 bits (331), Expect = 2e-38
Identities = 136/158 (86%), Positives = 149/158 (94%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
HTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AFA
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 79 TGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKT 138
TGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 139 ERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 57.8 bits (138), Expect = 4e-11
Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 43/203 (21%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GH + ++ D R VS + D +WD + P S + + P+G
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 77 FATGSDDATCRLFDIRADQELAMYSHD--------------------------------- 103
A G D C +++++ + S +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 104 ----------NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC 153
+ S++ + RL ++G D + +WD + GH++ ++
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 154 LGVTEDGMAVATGSWDSFLRIWN 176
+ +G A ATGS D+ R+++
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFD 254
Score = 45.9 bits (107), Expect = 6e-07
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 54 CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA 113
++T GH + I A+ + + + S D ++D ++ + + + A
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS--SWVMTCA 104
Query: 114 FSRSGRLLLAGYDDFNCNVWD 134
++ SG + G D C++++
Sbjct: 105 YAPSGNYVACGGLDNICSIYN 125
Score = 36.6 bits (83), Expect = 7e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 48
+GH V L + D +G+ D+ K+W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 0.060
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
M+T R L GH ++ + D + + S D L IW+
Sbjct: 45 MRTRR--TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 86.7 bits (213), Expect = 2e-21
Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 24/179 (13%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTF------- 70
GH V + D S + D + ++W + CK H + +++
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 200
Query: 71 -------------FPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSR 116
G +GS D T +++D+ L HDN + V F
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLFHS 257
Query: 117 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
G+ +L+ DD VWD L H++ V+ L + V TGS D +++W
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 75.9 bits (185), Expect = 2e-17
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
S ++ + +SG+ D + K+WD+ G C T GH++ + V F
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLLAGYDDFNC 130
G + +DD T R++D + + + + H++ +TS+ F ++ ++ G D
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH---FVTSLDFHKTAPYVVTGSVDQTV 313
Query: 131 NVWD 134
VW+
Sbjct: 314 KVWE 317
Score = 72.5 bits (176), Expect = 3e-16
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 2/160 (1%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH V + P VS + DA+ K+WD G ++T GH + ++F +G
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A+ S D T +L+D + + + + S +G +++ D +W+
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS--IMPNGDHIVSASRDKTIKMWEVQ 131
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
GH V + +DG +A+ S D +R+W
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171
Score = 69.0 bits (167), Expect = 5e-15
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 18/165 (10%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLF 89
P+ VS + D + K+W+++ G C +TF GH + V +G A+ S+D T R++
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
Query: 90 DIRADQELA------------------MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN 131
+ + A YS + G + + G LL+G D
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 132 VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+WD L GHDN V + G + + + D LR+W+
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275
Score = 52.4 bits (124), Expect = 4e-09
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 45 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN 104
K W R K GH S + V F P + S+DAT +++D
Sbjct: 1 KEWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 105 IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA 164
+ ++F SG+LL + D +WD E + GHD+ VS + + +G +
Sbjct: 60 --DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 165 TGSWDSFLRIWN 176
+ S D +++W
Sbjct: 118 SASRDKTIKMWE 129
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 84.5 bits (207), Expect = 3e-20
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 23/170 (13%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQT-------FPGHESDINAVTFFPNGWAFATGSD 82
D + +G+ D + ++WD G + GH+ + +V F +G + +GS
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274
Query: 83 DATCRLFDIRADQELAMY----------SHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
D + +L++++ + ++ + SVA +++ +L+G D
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTE------DGMAVATGSWDSFLRIWN 176
WD +L GH N V + V + ATGS D RIW
Sbjct: 335 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 62.9 bits (151), Expect = 1e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV------TFFP 72
H V+S++ + +SG+ D WD + G+ GH + + +V + P
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 73 NGWAFATGSDDATCRLFDIR 92
FATGS D R++ +
Sbjct: 367 EYNVFATGSGDCKARIWKYK 386
Score = 54.0 bits (128), Expect = 1e-09
Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 17/164 (10%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLF 89
P VSG+ D + ++WD+R G C T + +G A GS D R++
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232
Query: 90 DIRADQELAMYSHDNIIC-----GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL 144
D + +N + SV F+R G+ +++G D + +W+
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292
Query: 145 AG------------HDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
H + V + T++ + +GS D + W+
Sbjct: 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336
Score = 52.9 bits (125), Expect = 3e-09
Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 21/177 (11%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF------------------P 59
HT V + + D +G C+ + +++ + DGS P
Sbjct: 60 DHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 60 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR 119
+ I +V F P+G ATG++D R++DI + + + S
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 120 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++G D +WD + + L+ D + DG +A GS D +R+W+
Sbjct: 179 --VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Score = 40.9 bits (94), Expect = 3e-05
Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 34 TFVSGACDASAKLWDIRDGSCK----QTFPGHESDINAVTFFPNGWAFATGSDDATCRLF 89
+ + L++ H S + V F +G ATG + T +++
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVY 88
Query: 90 DIRADQELAMYSHDNIICG----------------ITSVAFSRSGRLLLAGYDDFNCNVW 133
+ +A S D+ I SV FS G+ L G +D +W
Sbjct: 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
Query: 134 DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D + IL GH+ + L G + +GS D +RIW+
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 62.6 bits (150), Expect = 1e-12
Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLF 89
D + VS + D + K+W+ +T GH+ I +GS D T RL+
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRLW 203
Query: 90 DIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD---------SMKTER 140
DI L + + R +++G D VWD T
Sbjct: 204 DIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 141 AGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
L H RV L D + + S D + IW+
Sbjct: 260 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 47.2 bits (110), Expect = 2e-07
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 9/161 (5%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
S + V L D + VSG D + K+WD CK+ GH + + +
Sbjct: 12 SETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-S 135
+ + ++ + ++ + + D + VWD +
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT------CSKDRSIAVWDMA 123
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
T+ +R + V D + + S D +++WN
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 164
Score = 44.8 bits (104), Expect = 2e-06
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 11/130 (8%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
+ + L R VSG+ D + +LWDI G+C + GHE +
Sbjct: 168 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIR 225
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC-------GITSVAFSRSGRLLLAG 124
+ +G+ D +++D+ A + + + + + F +++
Sbjct: 226 FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 283
Query: 125 YDDFNCNVWD 134
D +WD
Sbjct: 284 SHDDTILIWD 293
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 61.0 bits (146), Expect = 4e-12
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
H V+SL A + FVS D W G+ S + + +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322
Query: 79 TGSDDATCRLFDI 91
TGS D ++++
Sbjct: 323 TGSGDKKATVYEV 335
Score = 57.1 bits (136), Expect = 9e-11
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 4/130 (3%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII 106
+ S I ++ + P G A G + + + + + ++ H++ +
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV 268
Query: 107 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 166
S+ F+ G+ ++ D N W + + + V ++ D + TG
Sbjct: 269 L---SLKFAYCGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIVTG 324
Query: 167 SWDSFLRIWN 176
S D ++
Sbjct: 325 SGDKKATVYE 334
Score = 49.4 bits (116), Expect = 4e-08
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 6/164 (3%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT-----FPGHESDINAVTFFP 72
H V +++++ R +G K+WDI K ++ I + P
Sbjct: 49 NHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 73 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
+G G + +T ++D+ A + ++A S ++ + D N V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
WD GH + SC+ ++ DG + TG D+ +R W+
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Score = 45.6 bits (106), Expect = 7e-07
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 5/104 (4%)
Query: 36 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ 95
V DA R T H + AVT TG +++DI
Sbjct: 26 VPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPG 83
Query: 96 ELAMYSHDNIIC---GITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
+ S + + I S G L+ G + ++WD
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127
Score = 35.6 bits (80), Expect = 0.002
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI 49
S + V+S ++ D + V+G+ D A ++++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 25.5 bits (54), Expect = 4.5
Identities = 24/200 (12%), Positives = 46/200 (23%), Gaps = 40/200 (20%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+ S L PD T + G ++ +WD+ + + S + +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD--------- 127
S + + + + G + + S G L G D
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 128 -------------------------------FNCNVWDSMKTERAGILAGHDNRVSCLGV 156
+ + L H++ V L
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 157 TEDGMAVATGSWDSFLRIWN 176
G + D+ L W
Sbjct: 274 AYCGKWFVSTGKDNLLNAWR 293
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 61.0 bits (146), Expect = 4e-12
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 29 APDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRL 88
D VSG+ D S ++WD+ G+C T GH+S + + N +G+ D+T ++
Sbjct: 184 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKI 241
Query: 89 FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-----SMKTERAGI 143
+DI+ Q L N + + ++ DD +WD ++
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTC-LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300
Query: 144 LAGHDNRVSCLGVTEDGMAVATGSWD----SFLRIWN 176
G V + + + A GS + + L + +
Sbjct: 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
Score = 55.2 bits (131), Expect = 4e-10
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 9/160 (5%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GH V++ L VSG+ D + K+W G C +T GH + + N
Sbjct: 13 KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII- 70
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
+ + E H T + +++G D VWD
Sbjct: 71 -----ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 125
Query: 137 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ +L GH V C V DG V +G++D +++W+
Sbjct: 126 TGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWD 163
Score = 52.1 bits (123), Expect = 5e-09
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 32 MRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 91
R VSGA D K+WD +C T GH + + ++ F +G +GS D + R++D+
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 204
Query: 92 RADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRV 151
+ + + +L++G D +WD + L G +
Sbjct: 205 ETGNCIHTLTG----HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260
Query: 152 SCLGVTE-DGMAVATGSWDSFLRIWN 176
S + + + V T S D +++W+
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWD 286
Score = 43.3 bits (100), Expect = 4e-06
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 9/131 (6%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-MYSHDNI 105
W + + GH+ + G +GSDD T +++ + L + H
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG- 58
Query: 106 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 165
G+ S + + + + I + + + + V +
Sbjct: 59 --GVWSSQMRDN----IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 166 GSWDSFLRIWN 176
GS D+ LR+W+
Sbjct: 113 GSRDATLRVWD 123
Score = 25.5 bits (54), Expect = 4.4
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 11 LGSPAASGHTGDVMSLSLAPDMRTFVSGACDASA----KLWD 48
L + + G G V + + G+ + + + D
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 59.1 bits (141), Expect = 2e-11
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 2/137 (1%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
GH V++ L + ++GA D +++D + GH+ + A+ + G
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI- 66
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
+GS D T R++DI+ ++ N + ++ + ++ G D +VW
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 137 KTERAGILAGHDNRVSC 153
K +
Sbjct: 127 KESSVPDHGEEHDYPLV 143
Score = 45.7 bits (106), Expect = 7e-07
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 55 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVA 113
+ T GH + + F + + TG+DD R++D + L S HD G+ ++
Sbjct: 5 RTTLRGHMTSVITCLQFEDNY-VITGADDKMIRVYDSINKKFLLQLSGHDG---GVWALK 60
Query: 114 FSRSGRLLLAG-YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFL 172
++ G L+ R + ++ + TGS D+ L
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 173 RIWN 176
+W
Sbjct: 121 HVWK 124
Score = 42.6 bits (98), Expect = 8e-06
Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC-KQTFPGHESDINAVTFFPNGWAF 77
H ++ +++ + + ++++R G I +V F
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338
Query: 78 ATGSDDATCRL 88
A D L
Sbjct: 339 AAVEKDGQSFL 349
Score = 35.6 bits (80), Expect = 0.002
Identities = 11/130 (8%), Positives = 33/130 (25%), Gaps = 3/130 (2%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII 106
IR + + + + A + + +
Sbjct: 223 TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 282
Query: 107 CGITSVAFSRSGRLLLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVAT 165
F S +L++G ++ N+++ + +++ + + VA
Sbjct: 283 NLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAA 340
Query: 166 GSWDSFLRIW 175
D +
Sbjct: 341 VEKDGQSFLE 350
Score = 33.3 bits (74), Expect = 0.011
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII 106
+ F H ++++A+T F + ++++R+ + + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325
Query: 107 CGITSVAFSRSGRLLLAGYDDFNCNVWD 134
I SV F L+ A D +
Sbjct: 326 -QIWSVNFK-GKTLVAAVEKDGQSFLEI 351
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 58.7 bits (140), Expect = 2e-11
Identities = 19/166 (11%), Positives = 45/166 (27%), Gaps = 6/166 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNG 74
S + + D + +++ Q H + V + P+
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 75 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
T D ++ ++ I V ++ + + G ++
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123
Query: 135 SMKTERAGILAGHDNR----VSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + V L + + +A GS D RI++
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169
Score = 49.5 bits (116), Expect = 4e-08
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 8/164 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
S G V + + + + D++ L D T + AVTF
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL 257
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
A G D A +L+ ++ + + R D + S
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL---DKKASSEGSA 314
Query: 137 KTERAGILAGHDNRVSCLGVTEDG----MAVATGSWDSFLRIWN 176
AG+ + H N VS + V G T D + IW+
Sbjct: 315 AAG-AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
Score = 35.6 bits (80), Expect = 0.002
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
G + G S D A + H++ ++ ++
Sbjct: 276 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVL 334
Query: 72 PNG----WAFATGSDDATCRLFDIRADQEL 97
G F T D ++D+R+ +
Sbjct: 335 SGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
Score = 29.8 bits (65), Expect = 0.18
Identities = 36/224 (16%), Positives = 61/224 (27%), Gaps = 65/224 (29%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK--------------------- 55
H G V + APD V+ D +A +W ++ + K
Sbjct: 48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 107
Query: 56 ---------------------------QTFPGHESDINAVTFFPNGWAFATGSDDATCRL 88
S + ++ + PN A GS D CR+
Sbjct: 108 KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167
Query: 89 FDIRADQELA----------------MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
F + M+ + + V FS +G + D +
Sbjct: 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 227
Query: 133 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
D+ K LA + + + VA G D F ++
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT 270
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 58.3 bits (139), Expect = 4e-11
Identities = 14/171 (8%), Positives = 35/171 (20%), Gaps = 16/171 (9%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK-------QTFPGHESDINAVTF 70
+ + D + + + D + P N
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 71 FPNGWAFATGSDDAT-----CRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY 125
P G D ++ + ++ I +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 126 DDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ +D + N ++ L ++ D V D + +
Sbjct: 296 EKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
Score = 51.0 bits (120), Expect = 1e-08
Identities = 13/126 (10%), Positives = 31/126 (24%), Gaps = 13/126 (10%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLW-------DIRDGSCKQTFPGHESDINAVT 69
G L P T +G D + D D +
Sbjct: 224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 283
Query: 70 FFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFN 129
+ + +D++ + + ++ +T + S + ++ DD
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN------LTDLRLSADRKTVMVRKDDGK 337
Query: 130 CNVWDS 135
+
Sbjct: 338 IYTFPL 343
Score = 43.7 bits (101), Expect = 3e-06
Identities = 4/84 (4%), Positives = 17/84 (20%), Gaps = 4/84 (4%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
+ +D++ ++++ + +
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADR 326
Query: 75 WAFATGSDDATCRLFDIRADQELA 98
DD F + ++
Sbjct: 327 KTVMVRKDDGKIYTFPLEKPEDER 350
Score = 36.4 bits (82), Expect = 0.001
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 11 LGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 57
+ + + ++ L L+ D +T + D + + ++T
Sbjct: 305 VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
Score = 34.1 bits (76), Expect = 0.007
Identities = 16/174 (9%), Positives = 34/174 (19%), Gaps = 10/174 (5%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFVSGACD--ASAKLWDIRDGSCKQTFPGH-------E 62
+ + D + ++D R G ++
Sbjct: 34 TYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGV 93
Query: 63 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL 122
N D T + I +E +
Sbjct: 94 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 153
Query: 123 AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
GY +V+D + ++ D + S+ S +
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206
Score = 33.3 bits (74), Expect = 0.012
Identities = 15/152 (9%), Positives = 41/152 (26%), Gaps = 7/152 (4%)
Query: 27 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDD--A 84
+P ++ A + D+ + I V +
Sbjct: 9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 85 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL 144
++D R + + + ++ R+G+ + D F D + I
Sbjct: 67 FLGIYDYRTGKAEKFEENL---GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 145 AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ ++ ++++ +A G
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDG 155
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 54.9 bits (130), Expect = 6e-10
Identities = 12/124 (9%), Positives = 32/124 (25%), Gaps = 1/124 (0%)
Query: 13 SPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP 72
G + L P S + + + + H P
Sbjct: 10 PSLPRTARGTAVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP 68
Query: 73 NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNV 132
+G+ A+G R++D + + + +++ + + A +
Sbjct: 69 SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128
Query: 133 WDSM 136
+
Sbjct: 129 HVFL 132
Score = 47.6 bits (111), Expect = 1e-07
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT-FFPNGWAF 77
H+G V L+ +PD S + D + K+W++ ++T P + A
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 78 ATGSDDATCRLFDI 91
+ S + +
Sbjct: 297 VSISANGFINFVNP 310
Score = 41.0 bits (94), Expect = 2e-05
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQT-------FPGHESDINAVTFFPNGWAFATGSD 82
PD F S D + L++ DG+ H + +T+ P+G A+ S
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 83 DATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
D T +++++ + I + + + L++ + N +
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINFVN 309
Score = 38.3 bits (87), Expect = 2e-04
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 6/136 (4%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA-----MYS 101
++ K TF H +++V + P+G FA+ D T L++ +
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233
Query: 102 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDG 160
+ + + +S G + + D +W+ + I G LG+
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293
Query: 161 MAVATGSWDSFLRIWN 176
A+ + S + F+ N
Sbjct: 294 QALVSISANGFINFVN 309
Score = 36.4 bits (82), Expect = 0.001
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 110 TSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD 169
+ + +G + + I H ++ + + G A+G
Sbjct: 21 VVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 170 SFLRIWN 176
+RIW+
Sbjct: 80 GNVRIWD 86
Score = 25.2 bits (53), Expect = 5.3
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDI 49
G + L + + VS + + +
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 51.8 bits (122), Expect = 7e-09
Identities = 29/206 (14%), Positives = 56/206 (27%), Gaps = 47/206 (22%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF------PGHESDINAV 68
A H D+ S+S VS + D K+WD + + H+S ++ V
Sbjct: 9 AGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 69 TFFPNGWA-------FATGSDDATCRLFDIRADQELAMYSHDNIIC--------GITSVA 113
AT S + I + E + + ++
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 114 FSRSG-----RLLLAGYDDFNCNVWDSMKTER------------------AGILAGHDNR 150
+ S L+A +W
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 151 VSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + ++E G+ +ATG + ++I
Sbjct: 187 ATSVDISERGL-IATGFNNGTVQISE 211
Score = 48.3 bits (113), Expect = 9e-08
Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI----NAVTFFPNG 74
H+ VMSLS T S D + WD++ T H DI + + +G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 75 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL 120
+ A L M + N + V RS R
Sbjct: 348 DSLAEPGVFDVKFLKKG---WRSGMGADLNE--SLCCVCLDRSIRW 388
Score = 42.1 bits (97), Expect = 1e-05
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS--HDN 104
H S + +++F +G + D R +D++ + + + D+
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333
Query: 105 IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLG 155
I +A G L +V K R+G+ A + + C+
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVF---DVKFLKKGWRSGMGADLNESLCCVC 381
Score = 36.8 bits (83), Expect = 8e-04
Identities = 10/135 (7%), Positives = 41/135 (30%), Gaps = 13/135 (9%)
Query: 53 SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR-------ADQELAMYSHDNI 105
+ H++DI +V+ + + S D +++D + D+ + + H +
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 106 ICGITSV----AFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM 161
+ + + + L+ + + + + + + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 162 AVATGSWDSFLRIWN 176
+ + +
Sbjct: 123 WALKWGASNDRLLSH 137
Score = 34.4 bits (77), Expect = 0.005
Identities = 31/209 (14%), Positives = 60/209 (28%), Gaps = 44/209 (21%)
Query: 11 LGSPAASGHTGDVMSLSLAPD-----MRTFVSGACDASAKLWDIRDGSCK---------- 55
L + +L V+ + +W + +
Sbjct: 110 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169
Query: 56 --------QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMY----SHD 103
++ +V G ATG ++ T ++ ++ + L + S
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMI 228
Query: 104 NIICGITSVAFSRSGRLLLAGYDDFNCNVW----------------DSMKTERAGILAGH 147
N I SV FS G LL +D + + ++ + H
Sbjct: 229 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288
Query: 148 DNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ V L + G + + WD LR W+
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 51.5 bits (121), Expect = 8e-09
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 1/122 (0%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GHESDINAVTFFPNGWA 76
GH + +LS + D +T S + WDI G + FP H + I + G
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 136
F DD + + + + + + +A S G + +A
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 137 KT 138
T
Sbjct: 130 LT 131
Score = 47.7 bits (111), Expect = 2e-07
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 52 GSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITS 111
GS Q GH I A++ +G + + +DI ++ + IT
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH-ATMITG 60
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMK 137
+ + G L +DD V
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGS 86
Score = 42.7 bits (98), Expect = 7e-06
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQ--TFPGHESDINAVTFFPNGWAFATGSDDATCR 87
PD +G+ D S +W++ S H + N + D+ +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 88 LFDI 91
+++
Sbjct: 294 FWNV 297
Score = 36.5 bits (82), Expect = 9e-04
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 143 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ GH+ ++ L + DG + + + + W+
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWD 40
Score = 33.8 bits (75), Expect = 0.008
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 108 GITSVAFSRSGRLLLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATG 166
IT+++ S G+ L + + + N WD S H ++ + T G
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 167 SWDSFLRIW 175
D +
Sbjct: 74 WDDHLKVVP 82
Score = 31.1 bits (68), Expect = 0.055
Identities = 20/161 (12%), Positives = 38/161 (23%), Gaps = 2/161 (1%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
+ ++LS S +T + +
Sbjct: 136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV 195
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD--S 135
AT + S + V++S L G D + VW+
Sbjct: 196 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255
Query: 136 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
I H + + + + DS ++ WN
Sbjct: 256 PSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 29.2 bits (63), Expect = 0.25
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 4 HLDKSALLGSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI 49
+++K + H ++ + + T VS D++ K W++
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 48.3 bits (113), Expect = 9e-08
Identities = 14/117 (11%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 43 SAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSH 102
S+K + R +N++ F P T D ++++ +++ ++
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 103 DNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTED 159
N + V + S +L D ++ + + + + + E+
Sbjct: 292 FN---EDSVVKIACSDNILCLATSDDTFKTNAAIDQT----IELNASSIYIIFDYEN 341
Score = 46.4 bits (108), Expect = 4e-07
Identities = 14/140 (10%), Positives = 29/140 (20%), Gaps = 3/140 (2%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTF---PGHESDINAVTFFPN 73
+ + + P + + D S ++ + ++ + F N
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 74 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
L +N L+A D V
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 134 DSMKTERAGILAGHDNRVSC 153
D I + N +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNT 147
Score = 46.0 bits (107), Expect = 5e-07
Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 7/87 (8%)
Query: 56 QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE----LAMYSHDNIICGITS 111
Q + I+ + P+ S D + ++ + L + + +
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH---PLLC 61
Query: 112 VAFSRSGRLLLAGYDDFNCNVWDSMKT 138
F + L + + +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIG 88
Score = 45.6 bits (106), Expect = 9e-07
Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
+ V S+ +P + + D W+++ + F + V +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNI 306
Query: 77 FATGSDDATCRL-------FDIRADQELAMYSHDN 104
+ D T + ++ A ++ ++N
Sbjct: 307 LCLATSDDTFKTNAAIDQTIELNASSIYIIFDYEN 341
Score = 39.8 bits (91), Expect = 7e-05
Identities = 14/153 (9%), Positives = 36/153 (23%), Gaps = 18/153 (11%)
Query: 41 DASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQE 96
++ + + + + +A S D + +
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228
Query: 97 LA-------------MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI 143
N+ + S+ FS + L D + W+ ++
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288
Query: 144 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
A N S + + + + D +
Sbjct: 289 FAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320
Score = 35.6 bits (80), Expect = 0.002
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 143 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
I + +S + + + SWD L ++
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK 39
Score = 25.6 bits (54), Expect = 4.1
Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 23/153 (15%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGS------DDATCRLFDIRADQELA-- 98
D R+ + + N S +++ + F + ++
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 99 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA------------- 145
+ + D V +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 146 --GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
V+ + + + T D + WN
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 47.6 bits (111), Expect = 1e-07
Identities = 6/69 (8%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 24 MSLSLAPDMRTFVSGACDASAKLWDIRD-GSCKQTFPGHESDINAVTFFPNGWAFATGSD 82
+ + +G+ D + ++ ++ + H+ +N + + +
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277
Query: 83 DATCRLFDI 91
DA + +++
Sbjct: 278 DACIKRWNV 286
Score = 39.2 bits (89), Expect = 1e-04
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 99 MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVT 157
+ + + L+ G D N ++ + L H + V+ L
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267
Query: 158 EDGMAVATGSWDSFLRIWN 176
+ + D+ ++ WN
Sbjct: 268 TPST-LVSSGADACIKRWN 285
Score = 36.9 bits (83), Expect = 7e-04
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA--MYSHDN 104
S ++ A ATGS D ++ ++ ++ + +H +
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 105 IICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
G+ ++ + L+ +G D W+
Sbjct: 260 ---GVNNLLWETPSTLVSSGADA-CIKRWN 285
Score = 36.9 bits (83), Expect = 8e-04
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 56 QTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS 115
+T GH I A+T P +GS D + + + H N I S+ S
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ----DHSN---LIVSLDNS 55
Query: 116 RSGRLLLAGYDDFNCNVWDSM 136
++ +DD +
Sbjct: 56 KAQEYSSISWDDTLKVNGITK 76
Score = 35.3 bits (79), Expect = 0.002
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 76
SGH + +L++ P +SG+ D W H + I ++
Sbjct: 10 SGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEY 60
Query: 77 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 114
+ DD + + G T+V
Sbjct: 61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT 98
Score = 31.5 bits (69), Expect = 0.047
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI 49
+ H V +L T VS DA K W++
Sbjct: 255 NAHKDGVNNLLWETP-STLVSSGADACIKRWNV 286
Score = 28.0 bits (60), Expect = 0.54
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 143 ILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
++GH+ ++ L V + +GS+D + W+
Sbjct: 8 TISGHNKGITALTVN----PLISGSYDGRIMEWS 37
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 47.1 bits (111), Expect = 3e-07
Identities = 15/134 (11%), Positives = 29/134 (21%), Gaps = 5/134 (3%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
V+ L D K + ++ +G D + D+
Sbjct: 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMK 93
Query: 95 QELAMYSHD---NIICGITSVAFSRSGRLLLA-GYDDFNCNVWDSMKTERAGILAGHDNR 150
+ + TS + +A Y + D E I +
Sbjct: 94 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT 153
Query: 151 VSCLGVTEDGMAVA 164
+ A
Sbjct: 154 YDEQEYHPEPRVAA 167
Score = 39.0 bits (90), Expect = 1e-04
Identities = 14/172 (8%), Positives = 35/172 (20%), Gaps = 17/172 (9%)
Query: 22 DVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK-----QTFPGHESDINAVTFFPNG-W 75
V L+ R D + D+ + S + +
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIICGI---------TSVAFSRSG-RLLLAGY 125
A A + D + + S + ++ S ++
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 126 DDFNCNVWDSMKTERAGILA-GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + D + + G+ T + +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 234
Score = 38.2 bits (88), Expect = 3e-04
Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 11/125 (8%)
Query: 59 PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG 118
P + T D L D + + + S SG
Sbjct: 17 PEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASG 73
Query: 119 RLLLAGYDDFNCNVWDSMKTERAGILA------GHDNRVSCLGVTEDG-MAVATGSWDSF 171
R L D N+ D + + +A + + + A+A W
Sbjct: 74 RYLFVIGRDGKVNMID-LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132
Query: 172 LRIWN 176
I +
Sbjct: 133 YVIMD 137
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 46.4 bits (108), Expect = 4e-07
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 30 PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT---FFPNGWAFATGSDDATC 86
D + F + DA+ ++WD+ C Q + + + + S D T
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 87 RLFDI 91
+++
Sbjct: 321 NFYEL 325
Score = 39.9 bits (91), Expect = 7e-05
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 12/132 (9%)
Query: 14 PAASGHTGDVMSLSLAPDMRTFVSGACDASA-KLWDIRDGSCK--QTFPGHESD-INAVT 69
P S LS P ++ + D D F GH S + V
Sbjct: 11 PQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVK 70
Query: 70 FFP--NGWAFATGSDDATCRLFDIRADQELAM------YSHDNIICGITSVAFSRSGRLL 121
F P +G + ++ D+E + I+ +++ GR L
Sbjct: 71 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130
Query: 122 LAGYDDFNCNVW 133
+ +
Sbjct: 131 CVVGEGRDNFGV 142
Score = 39.5 bits (90), Expect = 9e-05
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII 106
+ + + FAT DAT R++D+ + + ++ D
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 107 CGITSVAFSRSG-RLLLAGYDDFNCNVWD 134
G V +G +++ D N ++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 32.6 bits (72), Expect = 0.019
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 5/136 (3%)
Query: 46 LWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCR--LFDIRADQELAMYSHD 103
+ + +T S + V F P+ F + +
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248
Query: 104 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT---EDG 160
+ G + D VWD ++ ++ V
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 161 MAVATGSWDSFLRIWN 176
+ + S D L +
Sbjct: 309 GRIISLSLDGTLNFYE 324
Score = 26.8 bits (57), Expect = 1.7
Identities = 6/74 (8%), Positives = 20/74 (27%), Gaps = 6/74 (8%)
Query: 109 ITSVAFSRSGRLLLAGYDD----FNCNVWDSMKTERAGILAGHDNRVSCLGV--TEDGMA 162
T +++ + + + DS + V+ + +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 163 VATGSWDSFLRIWN 176
+ +G + +W
Sbjct: 80 LCSGDESGKVIVWG 93
Score = 25.6 bits (54), Expect = 3.3
Identities = 19/168 (11%), Positives = 37/168 (22%), Gaps = 8/168 (4%)
Query: 17 SGHTGDVMSLSLAPDMRTFVSGAC--DASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
G + +S + R D G+ GH INA +
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
Query: 75 WAFATGSDDATCRLFDIRADQELAMYSH------DNIICGITSVAFSRSGRLLLAGYDDF 128
+ D +F + + + S + +
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231
Query: 129 NCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ + D AT D+ +R+W+
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 279
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 43.6 bits (101), Expect = 3e-06
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 6/127 (4%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT-FPGHESDINAVTFFPNGWAF 77
+ D+ A D+ G + + P
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 78 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 137
FD+ + + + SV S G + G + +D+
Sbjct: 256 FG--AYNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGSTVWLGGALGDLAAYDAET 310
Query: 138 TERAGIL 144
E+ G +
Sbjct: 311 LEKKGQV 317
Score = 40.6 bits (93), Expect = 3e-05
Identities = 18/159 (11%), Positives = 37/159 (23%), Gaps = 17/159 (10%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHE--SDINAVTFFPNG-WAFATGSDDATCRLFDI 91
++ A + D + + + P G A+AT + + D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 92 RADQELAMYSHDNIIC---GITSVAFSRSGRLLLAGYDD-----------FNCNVWDSMK 137
+ L + A S G+ L +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 138 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
T +++ L DG + D +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
Score = 39.0 bits (89), Expect = 1e-04
Identities = 16/162 (9%), Positives = 33/162 (20%), Gaps = 4/162 (2%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
G VM + + +A Q T +
Sbjct: 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDI 209
Query: 75 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ D+ + + ++ R +D
Sbjct: 210 DPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA---FGAYNVLESFD 266
Query: 135 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
K + + + V+ DG V G L ++
Sbjct: 267 LEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307
Score = 29.4 bits (64), Expect = 0.24
Identities = 6/52 (11%), Positives = 14/52 (26%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT 69
S++++ D T G +D K + ++
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 42.0 bits (97), Expect = 1e-05
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 8/132 (6%)
Query: 45 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN 104
W + + + F + AT D++ + D
Sbjct: 196 YFWPHQSPRHEFSMLYTI-----ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250
Query: 105 IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA 164
T + + + + +D +K + A D+ C+ + G +
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNR--LAKYD-LKQRKLIKAANLDHTYYCVAFDKKGDKLY 307
Query: 165 TGSWDSFLRIWN 176
G + L ++N
Sbjct: 308 LGGTFNDLAVFN 319
Score = 37.4 bits (85), Expect = 5e-04
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 2/80 (2%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 78
T + +P + G + +D++ + + V F G
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLY 307
Query: 79 TGSDDATCRLFDIRADQELA 98
G +F+ +++
Sbjct: 308 LGGTFNDLAVFNPDTLEKVK 327
Score = 37.0 bits (84), Expect = 6e-04
Identities = 8/116 (6%), Positives = 22/116 (18%), Gaps = 8/116 (6%)
Query: 68 VTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL-AGYD 126
+ + D+ +D + G + + R
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNH 60
Query: 127 DFNCNVWDSMKTERAGIL------AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ D + + ++ DG V + +
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Score = 33.2 bits (74), Expect = 0.014
Identities = 22/200 (11%), Positives = 41/200 (20%), Gaps = 41/200 (20%)
Query: 18 GHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFP------GHESDINAVTF 70
+ +APD RT +V D+ + +
Sbjct: 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96
Query: 71 FPNG------------WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG 118
P+G +F E + + + + G
Sbjct: 97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 119 RLLLAGYDDFNCNVWD------------------SMKTERAGILAGHDNRVSCLG----V 156
L +AG D + +V + + S L
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 157 TEDGMAVATGSWDSFLRIWN 176
+D AT +
Sbjct: 217 KDDKQDPATADLLYGYLSVD 236
Score = 32.4 bits (72), Expect = 0.022
Identities = 3/51 (5%), Positives = 11/51 (21%)
Query: 19 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVT 69
++ G +++ + D++ T
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTT 340
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 40.7 bits (94), Expect = 4e-05
Identities = 18/146 (12%), Positives = 35/146 (23%), Gaps = 5/146 (3%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRAD 94
V+ L D + + ++ +G DA + D+ A
Sbjct: 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK 93
Query: 95 QELAMY---SHDNIICGITSVAFSRSGRLLLAG-YDDFNCNVWDSMKTERAGILAGHDNR 150
+ + +S R +AG Y + D E I++
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153
Query: 151 VSCLGVTEDGMAVATGSWDSFLRIWN 176
V + A +
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIV 179
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 40.4 bits (93), Expect = 5e-05
Identities = 20/188 (10%), Positives = 36/188 (19%), Gaps = 27/188 (14%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFV----------SGACDASAKLWDIRDGSCKQTFPGH 61
G ++APD + V G ++ D
Sbjct: 8 KKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIP 67
Query: 62 ESDINAVTFFP------NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFS 115
V +G + + I A + + D V
Sbjct: 68 AKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEID----TAACVLAY 123
Query: 116 RSGRLLLA--GYDDFNCNVWDSMKTE---RAGILAGHDNRVSCLGVTEDGM--AVATGSW 168
+G V + R A D V ++
Sbjct: 124 PAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTY 183
Query: 169 DSFLRIWN 176
+R +
Sbjct: 184 GGNVRSAD 191
Score = 35.4 bits (80), Expect = 0.002
Identities = 17/140 (12%), Positives = 31/140 (22%), Gaps = 22/140 (15%)
Query: 16 ASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGW 75
S T + P + + + G+ G D P
Sbjct: 203 WSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLMHKGT-----DGSHKD-------PGTQ 250
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR-LLLAGYDDFNCNVWD 134
+ A Q++ + S+ S + L + V D
Sbjct: 251 VWVYDLKSKQRVARWDLAQQKVEP---------LVSIQVSEDDKPLFYGLTATSDLVVMD 301
Query: 135 SMKTERAGILAGHDNRVSCL 154
+ + N S L
Sbjct: 302 ARTGALQHVEKQIGNTSSLL 321
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 39.4 bits (90), Expect = 1e-04
Identities = 15/186 (8%), Positives = 39/186 (20%), Gaps = 25/186 (13%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
T D + P E IN +
Sbjct: 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT----HTEVFHPEDEFLINHPAYS 203
Query: 72 PNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN 131
+ D+ + + + + + + + G +A + +
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263
Query: 132 VWDSMKTERAGILAG-------------------HDNRVSCLGVTEDG--MAVATGSWDS 170
+ + + + + V++D + A + D
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDK 323
Query: 171 FLRIWN 176
L I +
Sbjct: 324 TLYIHD 329
Score = 38.2 bits (87), Expect = 2e-04
Identities = 16/189 (8%), Positives = 40/189 (21%), Gaps = 28/189 (14%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTF----------VSGACDASAKLWDIRDGSCKQTFPGH 61
G G + + +A D G +++D
Sbjct: 38 GRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 97
Query: 62 ESDINAVTFFPNGWAF---------ATGSDDATCRLFDIRADQELAMY-----SHDNIIC 107
++ V +P + S + D+ M H
Sbjct: 98 DAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTA 157
Query: 108 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGS 167
T R G L + + + ++ ++ + +
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH----PEDEFLINHPAYSQKAGRLVWPT 213
Query: 168 WDSFLRIWN 176
+ + +
Sbjct: 214 YTGKIHQID 222
Score = 37.5 bits (85), Expect = 5e-04
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
+ H L + + D + G F +I+++ +
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDE 311
Query: 75 --WAFATGSDDATCRLFDIRADQELA 98
+A + D T + D + +EL
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELR 337
Score = 37.1 bits (84), Expect = 6e-04
Identities = 18/164 (10%), Positives = 35/164 (21%), Gaps = 21/164 (12%)
Query: 18 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCK--QTFPGHESDINAVTFFPNGW 75
+ + + V D+ G K A + P GW
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIIC-----------------GITSVAFSRSG 118
+ E + + I S+ S+
Sbjct: 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311
Query: 119 RLLL--AGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG 160
+ LL D + D+ E + + + + G
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
Score = 28.2 bits (61), Expect = 0.56
Identities = 19/164 (11%), Positives = 30/164 (18%), Gaps = 26/164 (15%)
Query: 36 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG----------WAFATGSDDAT 85
A + D G G + +G A G
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 86 CRLFDIRADQELAMYSHDNIICGIT-----SVAFSRSGRLLL--AGYDDFNCNVWDSMKT 138
+FD A + + + + G+ LL V D
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 139 ERAGILAGHD-------NRVSCLGVTEDGMAVATGSWDSFLRIW 175
+L D + DG
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 37.9 bits (86), Expect = 3e-04
Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 35 FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRA 93
+++ + + + D+ T P S+ P+G + + + D
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 94 DQELAMYSHDNIIC 107
+ +A +
Sbjct: 64 NNVIATVPAGSSPQ 77
Score = 34.5 bits (77), Expect = 0.004
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLL-AGYDDFNCNVWD 134
A+ S+ + D+ +++ A + S G + A + ++ D
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIID 60
Score = 33.3 bits (74), Expect = 0.009
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 2/53 (3%)
Query: 47 WDIRDGSCKQTFPGHESDINAVTFFPNG-WAFATGSDDATCRLFDIRADQELA 98
D P D + P+G + S T + D + A
Sbjct: 229 IDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
Score = 31.0 bits (68), Expect = 0.065
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 19 HTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 77
D +++ PD + +V+ + + + D + T V P
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA--------VGKNPYASGQ 293
Query: 78 ATGSDDA 84
GS
Sbjct: 294 FIGSIPV 300
Score = 28.3 bits (61), Expect = 0.42
Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 4/157 (2%)
Query: 21 GDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFAT 79
+ M ++PD +V+ A + D + T P S + T
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91
Query: 80 GSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE 139
+T + D ++ +A S G+ L + + T+
Sbjct: 92 NMASSTLSVIDTTSNTVAGTVKTGKSPL---GLALSPDGKKLYVTNNGDKTVSVINTVTK 148
Query: 140 RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
+ VT DG V ++DS
Sbjct: 149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 34.6 bits (78), Expect = 0.004
Identities = 13/144 (9%), Positives = 29/144 (20%), Gaps = 24/144 (16%)
Query: 12 GSPAASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF 71
G+ + + A + K G+ES A F
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262
Query: 72 PNGWAFATGSDDA-------------------TCRLFDIRADQELAMYSHDNIICGITSV 112
G+ + Q S+ + ++
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAI 319
Query: 113 AFSRSGRLLL--AGYDDFNCNVWD 134
++ G +++D
Sbjct: 320 IAAQDGASDNYANSAGTEVLDIYD 343
Score = 26.1 bits (56), Expect = 2.3
Identities = 5/57 (8%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 18 GHTGDVMSLSLAPDMRT--FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP 72
+ D ++ A D + + + A ++D + + + +++
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQN 366
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 33.3 bits (74), Expect = 0.012
Identities = 22/177 (12%), Positives = 46/177 (25%), Gaps = 5/177 (2%)
Query: 5 LDKSALLGSPAASGHTGDVMSLSLAPDMRT-FVSGACDASAKLWDIRDGSCKQTFPGHE- 62
L+ L G V + ++PD R +V + + I TF
Sbjct: 21 LNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 80
Query: 63 --SDINAVTFFPNGWAFATGSDDA-TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR 119
+ ++ G GS +A + + + + + G S S R
Sbjct: 81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR 140
Query: 120 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 176
L + ++ + + + G M ++
Sbjct: 141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Score = 30.6 bits (67), Expect = 0.092
Identities = 9/104 (8%), Positives = 30/104 (28%), Gaps = 4/104 (3%)
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA-GYDDFNCNVWD 134
+ + ++++ + L + ++ + + S R L +F +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 135 ---SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 175
+ ++ + G V GS+++
Sbjct: 66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 30.3 bits (68), Expect = 0.11
Identities = 12/116 (10%), Positives = 25/116 (21%), Gaps = 10/116 (8%)
Query: 28 LAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCR 87
G + + + P ++ T + A G T
Sbjct: 225 AVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVS 283
Query: 88 LFDIR---------ADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 134
+ I + + + + G F G + D W+
Sbjct: 284 VIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWN 339
Score = 28.3 bits (63), Expect = 0.43
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 14/85 (16%)
Query: 76 AFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
F +G R+ + + +EL F+ G + + +
Sbjct: 13 GFWSGGHQGEVRVLGVPSMRELM-----------RIPVFNVDSA-TGWGITNESKEILGG 60
Query: 136 MKTERAGILAGHDNRVSCLGVTEDG 160
+ G H +S DG
Sbjct: 61 DQQYLNGDC--HHPHISMTDGRYDG 83
Score = 26.8 bits (59), Expect = 1.7
Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 19/94 (20%)
Query: 15 AASGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 74
V ++A ++ + ++ IR Q PGH + +G
Sbjct: 327 TTLFIDSQVCKWNIADAIKHY------NGDRVNYIRQKLDVQYQPGHNHASLTESRDADG 380
Query: 75 WAFATGSDDATCR-------------LFDIRADQ 95
S + R L DI ++
Sbjct: 381 KWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEE 414
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase,
C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 270
Score = 29.9 bits (67), Expect = 0.11
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 81 SDDATCRLFD-----IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 135
++D + +R + ++ N I G T + + +G+L AG V +S
Sbjct: 90 ANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNS 149
Query: 136 MKTERAGILAGHDNR 150
T ++ G +
Sbjct: 150 GAT---VVVEGCGSN 161
>d1njha_ b.128.1.1 (A:) Hypothetical protein YojF {Bacillus subtilis
[TaxId: 1423]}
Length = 118
Score = 25.9 bits (57), Expect = 1.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 108 GITSVAFSRSGRLLLAGYDD 127
G+T RLL+AG+
Sbjct: 82 GLTEYTVDEENRLLMAGHLP 101
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 26.2 bits (56), Expect = 2.2
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 109 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW 168
+ ++A + G + + ++ + I A + +VS L T +G VATG
Sbjct: 30 LENLASAPDGTIFVTNHE--VGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN 87
Query: 169 DSFLRIWN 176
+ + +
Sbjct: 88 ADSIPVVS 95
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase,
C-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 268
Score = 25.4 bits (55), Expect = 4.8
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 74 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 133
G + I + + DN+I G T + + G L G V
Sbjct: 91 NDYVGKGMNGGE---IVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVR 147
Query: 134 DSMKTERAGILAGH 147
+S+ H
Sbjct: 148 NSVGKAVIEGAGDH 161
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish
(Raphanus sativus) [TaxId: 3726]}
Length = 51
Score = 23.3 bits (50), Expect = 5.5
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 37 SGACDASAKLWD-IRDGSCKQTFPGH 61
+ AC + R GSC FP H
Sbjct: 18 NNACKNQCINLEKARHGSCNYVFPAH 43
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse
chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Length = 50
Score = 22.6 bits (48), Expect = 8.3
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 37 SGACDASAKLWD-IRDGSCKQTFPGH 61
+ CD + W+ G+C +
Sbjct: 17 TAHCDKQCQDWEKASHGACHKRENHW 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.435
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 674,215
Number of extensions: 27753
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 137
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)