BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15419
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 9 FSPYFVQGPTSTSWVYESFIQYWGW-SLPESARQ---------TFLKGGYYSFLTEKNLR 58
+ + + P+ +YE F Q++G +L SA + F K GY F+
Sbjct: 20 YKKFMTECPSGQLTLYE-FKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAAL 78
Query: 59 IIVLNTNVYQKLNWWNVLYPVDPN 82
+VL V QKL W+ LY VD N
Sbjct: 79 SLVLKGKVDQKLRWYFKLYDVDGN 102
>pdb|3ZIK|A Chain A, Structure Of The Wpl1 Protein
pdb|3ZIK|B Chain B, Structure Of The Wpl1 Protein
pdb|3ZIL|A Chain A, Structure Of The Wpl1 Protein
Length = 378
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 2 LLNFSDLFSPYFVQGPTSTSWVYESFIQYWGWS-------LPESARQTFLKGGYYSFLTE 54
L NF +F FV+ PT S+V + F+ + +S LP A FLK +F T+
Sbjct: 301 LTNFGAVFRSVFVKKPTEMSFVLQLFLLVYAYSAGAAGVQLP-PAEADFLKSELEAFATD 359
>pdb|1U5K|A Chain A, Recombinational Repair Protein Reco
pdb|1U5K|B Chain B, Recombinational Repair Protein Reco
pdb|1W3S|A Chain A, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|1W3S|B Chain B, The Crystal Structure Of Reco From Deinococcus
Radiodurans.
pdb|2V1C|C Chain C, Crystal Structure And Mutational Study Of Recor Provide
Insight Into Its Role In Dna Repair
Length = 244
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 187 GTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPKFQLSRC--CGSGD 241
G + FD + ++ + + +P+W+ L + GL P Q +RC CG+ D
Sbjct: 106 GEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIP--QTARCARCGAPD 160
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/171 (17%), Positives = 66/171 (38%), Gaps = 51/171 (29%)
Query: 3 LNFSDLFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVL 62
L+ ++FSP F + T+ +++Y EKN+ I VL
Sbjct: 122 LDKEEIFSPSFFEVVTAMAFLY---------------------------FAEKNVDIAVL 154
Query: 63 NTNVYQKLNWWNVLYP-------VDPN---------DQLSWLASTLLE-------AEKNN 99
+ +L+ NV++P VD + +Q++W S +++ E+
Sbjct: 155 EVGLGGRLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKR 214
Query: 100 EKVHILSHIPPGSEDTMQVFQREYRKIINRFE-HTIAAEFNGHTHYEDITI 149
E + ++ + M V +++ + + H ++ G +ED+ +
Sbjct: 215 EALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVL 265
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 224 LESTRPKFQLSRCCGSGDRAISYLDSGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCR- 282
L++ P + SG +A +L+ GD++SI DI+ + + G TA C+ +
Sbjct: 73 LKTKLPGVKSVISKASGSKADLFLEPGDKVSI---GDIYLEVRATPGHTAGCVTYVTGEG 129
Query: 283 VDQPN 287
DQP
Sbjct: 130 ADQPQ 134
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 111 GSEDTMQVFQREYRKIINRFEHTIAAEFNGHTHYEDITIFYDKNNS 156
G +DT + E KII + +H +A +G + +I F +NS
Sbjct: 1 GKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNS 46
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 47/214 (21%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 52 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 111
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSE---------DTMQVFQREYRKIINRFEHTIA 135
+ +L L A KNN +V I H PGS+ D+ + ++ +TI
Sbjct: 112 VQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLNVLNTIF 171
Query: 136 AEFNGHTHYEDITI---------------------FYDKNNSSRATN-----VAYNGGSI 169
++ G+ Y D+ I F D NS R T + ++ +
Sbjct: 172 KKYGGN-EYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAAQV 230
Query: 170 TSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISS 203
Y+N VA G W V D + Y + S
Sbjct: 231 FGYWN-----NFLTVAEGQWNVV-VDHHHYQVFS 258
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 47 HWTQTLGKEAASRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 106
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 107 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 136
>pdb|2NXF|A Chain A, Crystal Structure Of A Dimetal Phosphatase From Danio
Rerio Loc 393393
Length = 322
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 84 QLSWLASTLLEAEKNNEKVHILSHIP--PGSEDTMQV-FQREYRKIINRFEHTIAAEFNG 140
QL WL + L ++ E+V I SH+P P + D + + + E + R ++ G
Sbjct: 205 QLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAG 264
Query: 141 HTH 143
H H
Sbjct: 265 HDH 267
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 53 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 112
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 113 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 142
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 53 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 112
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 113 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 142
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 53 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 112
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 113 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 142
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 52 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 111
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 112 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 141
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 53 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 112
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 113 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 142
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 30 YWGWSLPESARQTFLKGGYYSFLTEKNLRIIV-LNTN-VYQKLNWWNV-LYPVDP--NDQ 84
+W +L + A L+ + +++TE++ + I L N V + +W L DP Q
Sbjct: 47 HWTQTLGKEAALRILQKHWSTWITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQ 106
Query: 85 LSWLASTLLEAEKNNEKVHILSHIPPGSED 114
+ +L L A KNN +V I H PGS++
Sbjct: 107 VQYLEKALGWARKNNIRVWIDLHGAPGSQN 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,083,648
Number of Sequences: 62578
Number of extensions: 487307
Number of successful extensions: 1312
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1308
Number of HSP's gapped (non-prelim): 30
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)