RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15419
         (332 letters)



>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
           monocytogenes}
          Length = 443

 Score = 71.0 bits (173), Expect = 8e-14
 Identities = 24/205 (11%), Positives = 63/205 (30%), Gaps = 17/205 (8%)

Query: 25  ESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVYQKLNWWNVLYP--VDPN 82
             F + +     E A  +      Y       + +++L+T +Y+                
Sbjct: 159 TDFSKIYSDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTA 218

Query: 83  DQLSWLASTLLEAEKNNEKVHILSHIPPGSEDTMQV------FQREYRKIINRFEHTIAA 136
             L W+  +   A+KN  K+  + H      + +        + ++    +      +  
Sbjct: 219 GTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTE--GAMDF 276

Query: 137 EFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDS 196
             +GH H ++I      +     T++     +++ +      Y     +      T + S
Sbjct: 277 SLSGHIHTQNIRSAKSTDGKE-ITDIV--TNALSVFP---HKYGNITYSAKNKNFT-YQS 329

Query: 197 YTYNISSIVNDSEPDWIKLYSFKEE 221
              ++ +           L +F + 
Sbjct: 330 QKLDMEAWAKAQGSTDENLLNFDQF 354



 Score = 30.5 bits (68), Expect = 0.72
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 18/99 (18%)

Query: 233 LSRCCGSGDRAISYLDSGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSET 292
            S   G  ++  + ++    +S++  TD+HY    L                        
Sbjct: 20  CSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDN-----------------GKAF 62

Query: 293 DRATKYGHYDNCDMPLDVIRSALEQIKKHK-GYLLCSGD 330
           ++    G         ++  + L  ++  K   L+ SGD
Sbjct: 63  EKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGD 101


>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
           metalloprotein, metallophosphoesterase, protein
           structure initiative; 1.70A {Danio rerio} SCOP:
           d.159.1.12
          Length = 322

 Score = 61.5 bits (148), Expect = 6e-11
 Identities = 23/177 (12%), Positives = 42/177 (23%), Gaps = 41/177 (23%)

Query: 16  GPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVYQKLNW--- 72
             +  S +               +         Y F    N R ++L+      +     
Sbjct: 101 NFSRPSLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEE 160

Query: 73  -------WNVLYPVDPN--------------------------DQLSWLASTLLEAEKNN 99
                  W +L   + N                           QL WL + L  ++   
Sbjct: 161 SEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQ 220

Query: 100 EKVHILSHIPPGSEDTMQVFQ----REYRKIINRFEHTIAAEFNGHTHYEDITIFYD 152
           E+V I SH+P        +           ++   +  +     GH H         
Sbjct: 221 ERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCF-IAGHDHDGGRCTDSS 276


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 50.0 bits (119), Expect = 6e-07
 Identities = 50/319 (15%), Positives = 89/319 (27%), Gaps = 134/319 (42%)

Query: 103 HILSHIPPGSEDTMQVFQREYRKIINRFE---------HTIAAEFNGH------THYEDI 147
           ++ S + P        F +     +  FE         H +AA+             E I
Sbjct: 67  YVSSLVEPSKVGQ---FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123

Query: 148 TIFY----------DKNNSS---RATN-------VAYNG-GSITSYYNVNPNYRLYKVAR 186
             +           DK ++S   RA           + G G+   Y+             
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------------ 171

Query: 187 GTWEVTD-FDSYTYNISSIVN----------DSEPDWIKLYSFKEEYGLE--------ST 227
              E+ D + +Y   +  ++            +  D  K+++     GL         S 
Sbjct: 172 ---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT----QGLNILEWLENPSN 224

Query: 228 RPKFQLSRCCGSGDRAISYLDSGDEIS--IIQLTDI-HY---------DP----KYLAGK 271
            P                YL S   IS  +I +  + HY          P     YL G 
Sbjct: 225 TP-------------DKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270

Query: 272 TAHC---IAPLCCRVDQPNASSET--------DRATKY-------GH--YDNCDMPLDVI 311
           T H    +  +        A +++         +A           +  Y N  +P  ++
Sbjct: 271 TGHSQGLVTAVAI------AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324

Query: 312 RSALEQIKKHKGYLL-CSG 329
             +LE  +     +L  S 
Sbjct: 325 EDSLENNEGVPSPMLSISN 343



 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 36/239 (15%), Positives = 64/239 (26%), Gaps = 103/239 (43%)

Query: 179  YRLYKVARGTWEVTD---FDSYTYNISSIVNDSEPDWIKLYSF--------KEEY----- 222
            Y+  K A+  W   D    D+Y ++I  IV ++ P  + ++ F        +E Y     
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIH-FGGEKGKRIRENYSAMIF 1693

Query: 223  -----GLESTRPKFQLSRCCGSGDRAISYLDSGDE---------------ISIIQLTDIH 262
                 G   T   F+        + + SY    ++               +      D+ 
Sbjct: 1694 ETIVDGKLKTEKIFK-----EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748

Query: 263  Y-----DPKYLAGKTAHCI----APLCCRVDQPNAS----SETDRATKY-GHYDNCDMPL 308
                       AG   H +    A L        A             Y G      +P 
Sbjct: 1749 SKGLIPADATFAG---HSLGEYAA-LASL-----ADVMSIESLVEVVFYRGMTMQVAVPR 1799

Query: 309  D------------------------VIRSALEQIKKHKGYLL-------------CSGD 330
            D                         ++  +E++ K  G+L+              +GD
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858



 Score = 31.2 bits (70), Expect = 0.56
 Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 63/194 (32%)

Query: 156 SSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDF-DSYTYNISSIVNDSEP-DWI 213
           S+R   +++  GS+     V P    + +A    E   F             D EP    
Sbjct: 5   STRPLTLSH--GSLEHVLLV-PT-ASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPA 58

Query: 214 KLYSFKEEYGLESTRPKFQLSRCCGSGDRAISYLDS-------GDEISIIQLTDIHYDPK 266
           +L              KF            + Y+ S       G    ++ L    ++  
Sbjct: 59  ELVG------------KF------------LGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94

Query: 267 YLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRS---ALEQI----- 318
           YL G   H +A    ++ Q N ++                  ++I++   A         
Sbjct: 95  YLEGNDIHALA---AKLLQENDTTLVKTK-------------ELIKNYITARIMAKRPFD 138

Query: 319 KKHKGYLLCSGDAG 332
           KK    L  +   G
Sbjct: 139 KKSNSALFRAVGEG 152


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 47/324 (14%), Positives = 99/324 (30%), Gaps = 78/324 (24%)

Query: 52  LTEKNLRII-VLNTNVYQKLNWWNVLYPVDPNDQLSWLASTL--------LEAEKNNEKV 102
           LT +  ++   L+      ++  +    + P++  S L   L         E    N + 
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 103 HILSHIPPGSEDTMQVFQREYRKI-INRFEHTIAAEFNG------HTHYEDITIFYDKNN 155
             LS I     D +  +   ++ +  ++    I +  N          ++ +++F     
Sbjct: 330 --LSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--- 383

Query: 156 SSRATNVAYNGGSITSYYNVN-PNYRLYKVARGTW------EVTDFDSYTYNISSIVNDS 208
                             + + P   L  +    W      +V    +  +  S +    
Sbjct: 384 ------------------SAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 209 EPDWIKLYS--------FKEEYGLEST-RPKFQLSRCCGSGDRAISYLDS------GDEI 253
           +   I + S         + EY L  +    + + +   S D    YLD       G  +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 254 SIIQLTD-------IHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHY--DNC 304
             I+  +       +  D ++L  K  H            N   +      Y  Y  DN 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYKPYICDND 538

Query: 305 DMPLDVIRSALEQIKKHKGYLLCS 328
                ++ + L+ + K +  L+CS
Sbjct: 539 PKYERLVNAILDFLPKIEENLICS 562



 Score = 37.5 bits (86), Expect = 0.007
 Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 78/266 (29%)

Query: 114 DT-MQVFQREYRKIINRFEHTIAAEFNGHTHYEDIT-----------IFYDKNNSSRA-- 159
           D      Q +Y+ I++ FE      F+     +D+            I   K+  S    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 160 --TNVAYNGGSITSYY---NVNPNY-----RLYKVARGTWEVTDFDSYTYNISSIVNDSE 209
               +      +   +    +  NY      +    R    +T    Y      + ND++
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQ 124

Query: 210 PDWIKLYSFKEEY------GLESTRPKFQLSRC--CGSG------------------DRA 243
             + K    + +        L   RP   +      GSG                  D  
Sbjct: 125 V-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 244 ISYLDSGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDN 303
           I +L+  +  S   + ++              +  L  ++D PN +S +D      H  N
Sbjct: 184 IFWLNLKNCNSPETVLEM--------------LQKLLYQID-PNWTSRSD------HSSN 222

Query: 304 CDMPLDVIRSALEQIKKHKGY---LL 326
             + +  I++ L ++ K K Y   LL
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLL 248



 Score = 36.4 bits (83), Expect = 0.013
 Identities = 27/167 (16%), Positives = 53/167 (31%), Gaps = 41/167 (24%)

Query: 193 DFDS----YTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPKFQLSRC---CGSGDRA-- 243
           DF++    Y Y    I++  E  ++  +  K+    +  +             S D    
Sbjct: 8   DFETGEHQYQYK--DILSVFEDAFVDNFDCKDV--QDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 244 -----ISYLDSGDEIS---IIQLTDIHYDPKYLAGKTA-HCIAPLCCRVDQPNASSETDR 294
                 + L   +E+    + ++  I+Y   +L          P    +       + DR
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQP---SMMTRMYIEQRDR 118

Query: 295 ATKYGHYDNCDM---------PLDVIRSALEQIKKHKGYLLCSGDAG 332
                + DN            P   +R AL +++  K  L+  G  G
Sbjct: 119 L----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLG 160


>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
           swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium
           tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
          Length = 330

 Score = 36.0 bits (83), Expect = 0.011
 Identities = 32/147 (21%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 46  GGYYSFLTEKNLRIIVLNTNVYQKLNWWNVLYPVDPNDQLSWLASTLLEAEKNNEKVHIL 105
                      LRIIVL+T+V          +      QL WLA  L       +   + 
Sbjct: 128 APLDRVCMIDGLRIIVLDTSVP------GHHHGEIRASQLGWLAEELATPA--PDGTILA 179

Query: 106 SHIPP---GSEDTMQVFQREYRKIINRFEHT-IAAEFNGHTHYEDITIFYDKNNSS-RAT 160
            H PP     +  + V  R+   +      T + A   GH HY     F     S   AT
Sbjct: 180 LHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVGIPVSVASAT 239

Query: 161 NVAYN---GGSITSYYNVNPNYRLYKV 184
               +       T   +      L  V
Sbjct: 240 CYTQDLTVAAGGTRGRDGAQGCNLVHV 266


>3olq_A Universal stress protein E; structural genomics, PSI-2, protein
           structure initiative, MI center for structural genomics,
           MCSG; HET: UNL; 1.82A {Proteus mirabilis}
          Length = 319

 Score = 34.9 bits (80), Expect = 0.029
 Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 74  NVLYPVDPNDQ----LSWLASTLLEAEKNNEKVHILSHIPPGSEDTMQVFQREYRKIINR 129
           N+L  +DPN      L   A  +   ++N  ++     +   S D   +   + R  + +
Sbjct: 9   NLLVVIDPNQDDQPALRR-AVYI--VQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRK 65

Query: 130 FEHTIAAE 137
                   
Sbjct: 66  GVINQKTA 73


>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
           phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
           SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
          Length = 274

 Score = 34.8 bits (80), Expect = 0.030
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 48  YYSFLTEKNLRIIVLNTNVYQKLNWWNVLYPVDPNDQLSWLASTLLEAEKNNEKVHILSH 107
             +       R++ ++++       W     +   + +SWL + L E    ++   I  H
Sbjct: 106 RCAVDD-FATRLLFIDSSRAGTSKGW-----LTD-ETISWLEAQLFEGG--DKPATIFMH 156

Query: 108 IPP---GSE--DTMQVF-QREYRKIINRFEHTIAAEFNGHTHYEDITIFYD-KNNSSRAT 160
            PP   G+   D +          ++ RF   +   F GH H   +T +     ++   T
Sbjct: 157 HPPLPLGNAQMDPIACENGHRLLALVERFPS-LTRIFCGHNHSLTMTQYRQALISTLPGT 215

Query: 161 N--VAYNGGSITSYYNVNPN-YRLYKVARGTWEVT 192
              V Y       YY+++P    +++     W   
Sbjct: 216 VHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSY 250


>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
           initiative, PSI-2, NEW YORK SGX research center for
           structu genomics, nysgxrc; 1.90A {Candida albicans}
           SCOP: d.114.1.1 d.159.1.2
          Length = 557

 Score = 32.7 bits (74), Expect = 0.16
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 48  YYSFLTEKN-LRIIVLNTNVYQKLNWWNVLYPVDPNDQLSWLASTLLEAEKNNEKVHI-- 104
           Y  F T    +R++        K         V P   ++         E    +V +  
Sbjct: 148 YKYFTTPIRGIRVMAFGFLFDFKRFNSGT--RVTP---MAETIHEPWFQEALKHEVDLII 202

Query: 105 -LSHIPPGSEDTMQVFQREYRKIINRFEHTIAAEFNGHTHYEDITIFYDKNNSSRATNVA 163
            + H P         F + ++ +   F  TI   F GH+H  D T+F   +   ++    
Sbjct: 203 IVGHTPISHNWGE--FYQVHQYLRQFFPDTIIQYFGGHSHIRDFTVFDSLSTGLQSGRYC 260

Query: 164 YNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDS 208
              G  +   +   +  L    R +    DF++ ++   + ++  
Sbjct: 261 ETVGWTSVNLD-KADLNLPVRQRFSRSYIDFNTDSFKYHTNLDKE 304


>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
           {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
          Length = 426

 Score = 32.0 bits (72), Expect = 0.25
 Identities = 31/204 (15%), Positives = 66/204 (32%), Gaps = 29/204 (14%)

Query: 24  YESFIQYWG-WSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVYQKLNWWNVLYPVDPN 82
           Y+ F+ +   +  P  A  +     +Y+     +  IIVL++                 +
Sbjct: 212 YQPFVPFTNRYPTPHEASGSG-DPLWYAI-KRASAHIIVLSSYSGFVKY----------S 259

Query: 83  DQLSWLASTLLEAEKNNEK-VHILSHIPPGSEDTMQVFQREYRKIINRFE-----HTIAA 136
            Q  W  S L +  ++    + +L H P  +  + +    E   +   FE     + +  
Sbjct: 260 PQYKWFTSELEKVNRSETPWLIVLVHAPLYN--SYEAHYMEGEAMRAIFEPYFVYYKVDI 317

Query: 137 EFNGHTHYEDIT--IFYDKNNSSRATNVAYNGGSITSYYNVNP------NYRLYKVARGT 188
            F+GH H  + +  +     N   A     +  S   Y  +                + +
Sbjct: 318 VFSGHVHSYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPS 377

Query: 189 WEVTDFDSYTYNISSIVNDSEPDW 212
           +      S+ + I  I N +   +
Sbjct: 378 YSAFREASFGHGIFDIKNRTHAHF 401


>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
           structural genomics, for structural genomics of
           infectious diseases, csgid; HET: MSE ATP; 2.00A
           {Bacillus anthracis} PDB: 3r23_A*
          Length = 307

 Score = 29.4 bits (67), Expect = 1.6
 Identities = 5/17 (29%), Positives = 7/17 (41%)

Query: 263 YDPKYLAGKTAHCIAPL 279
           Y+ KY    T   +  L
Sbjct: 207 YNAKYDDASTIEEVIEL 223


>1lrz_A FEMA, factor essential for expression of methicillin resistance;
           peptidoglycan, X-RAY crystallography, multiple anomalous
           dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4
           d.108.1.4 d.108.1.4
          Length = 426

 Score = 28.3 bits (62), Expect = 3.9
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 121 REYRKIINRFEHTIA-AEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNY 179
              ++ ++  E  I   +     H  ++ I       +    V Y GG+  ++ +   +Y
Sbjct: 284 DNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSNAFRHFAGSY 343

Query: 180 RLYKVARGTWEV------TDFDSYTYNISSIVNDSEPDWIKLYSFKEEYG 223
            +       WE+         D Y +   S     + +   +  FK+ Y 
Sbjct: 344 AVQ------WEMINYALNHGIDRYNFYGVSGKFTEDAEDAGVVKFKKGYN 387


>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
           structure, hydrolase; HET: ADP; 2.40A {Salmonella
           typhimurium}
          Length = 438

 Score = 27.7 bits (62), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 158 RATNVAYNGGSITSYYNV 175
           RA N  + GGSIT++Y V
Sbjct: 293 RAGNGIHGGGSITAFYTV 310


>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
           motif, ATP- binding, nucleotide-binding, transferase;
           HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
           3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
          Length = 260

 Score = 26.8 bits (59), Expect = 10.0
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 72  WWNVLYPVDPNDQLSW--LASTLLEAEKNNEKVHILSHIPPGSEDTMQVFQREYRKIINR 129
           W      +D    + +  +A  L+E  K   K ++L      + +      +E RKI++ 
Sbjct: 145 WDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPKFYVLEENKNKNNNISDKIDKETRKIVSE 204


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,230,074
Number of extensions: 301455
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 30
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)