RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15419
(332 letters)
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
Length = 320
Score = 62.1 bits (149), Expect = 2e-11
Identities = 21/200 (10%), Positives = 48/200 (24%), Gaps = 16/200 (8%)
Query: 4 NFSDLFSPYFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLN 63
D+++ F P + +++ E + NL+ + L
Sbjct: 125 IGDDIYAYEFSPAPNFRFVLLDAY--DLSVIGREEESEKHTHSWRILTQHNHNLQDLNLP 182
Query: 64 TNVYQKLNWWNVLYPVDPNDQLSWLASTLLEAEKNNEKVHILSHIPPGSEDTMQVF---- 119
+ QL WL + L ++ E+V I SH+P +
Sbjct: 183 PVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWN 242
Query: 120 QREYRKIINRFEHTIAAEFNGHTHYEDITIFYDKNNSSRATNVAY-NGGSITSYYNVNPN 178
++ + + GH H + + +
Sbjct: 243 HEAVLSVLRSHQS-VLCFIAGHDHDGGRCTDSS--------GAQHITLEGVIETPPHSHA 293
Query: 179 YRLYKVARGTWEVTDFDSYT 198
+ + +
Sbjct: 294 FATAYLYEDRMVMKGRGRVE 313
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 96
Score = 28.8 bits (65), Expect = 0.24
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 152 DKNNSSRATNVAYNGG--SITSYYNVNP 177
D S V Y+GG IT Y NV P
Sbjct: 11 DATPSVFDVVVGYDGGADHITGYGNVTP 38
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 302
Score = 29.4 bits (64), Expect = 0.53
Identities = 21/204 (10%), Positives = 50/204 (24%), Gaps = 14/204 (6%)
Query: 12 YFVQGPTSTSWVYESFIQYWGWSLPESARQTFLKGGYYSFLTEKNLRIIVLNTNVYQKLN 71
+ + G + I Y S + + + + + ++ I +L+T +
Sbjct: 84 HVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNS 143
Query: 72 WWNVLYPVD-------PNDQLSWLASTLLEAEKNNEKVHILSHIPPGSEDTMQVFQREYR 124
V + QL+W+ L A K + + + + +
Sbjct: 144 DDFVSQQPERPRNLALARTQLAWIKKQL-AAAKEDYVLVAGHYPVWSIAEHGPTHCLVKQ 202
Query: 125 KIINRFEHTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKV 184
+ H + A GH H +G + ++
Sbjct: 203 LLPLLTTHKVTAYLCGHDHN------LQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNG 256
Query: 185 ARGTWEVTDFDSYTYNISSIVNDS 208
+ + I
Sbjct: 257 YLRFHFGAENSLGGFAYVEITPKE 280
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 29.3 bits (65), Expect = 0.53
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 48 YYSFLTEKNLRIIVLNTNVYQKLNWWNVLYPVDPNDQLSWLASTLLEAEKNNEKVHILSH 107
Y F T ++ ++ + + + + + + + I+ H
Sbjct: 144 YKYFTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQEALKHEVDLII-IVGH 202
Query: 108 IPPGSEDTMQVFQREYRKIINRFEHTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGG 167
P + ++ + F TI F GH+H D T+F + ++ G
Sbjct: 203 TPISHNWGEFY--QVHQYLRQFFPDTIIQYFGGHSHIRDFTVFDSLSTGLQSGRYCETVG 260
Query: 168 SIT 170
+
Sbjct: 261 WTS 263
>d1n67a2 b.2.3.4 (A:370-560) Clumping factor A {Staphylococcus
aureus [TaxId: 1280]}
Length = 191
Score = 28.3 bits (63), Expect = 1.0
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 150 FYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSE 209
FY+ + + + VNP+ T + + +++++
Sbjct: 6 FYNLSIKGTIDQIDKTNNTYRQTIYVNPSGDNVIAPVLTGNLK----PNTDSNALIDQQN 61
Query: 210 PDWIKLYSFKEEYGL 224
IK+Y L
Sbjct: 62 TS-IKVYKVDNAADL 75
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 27.6 bits (61), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 91 TLLEAEKNNEKVHILSHIPPGSEDTMQVFQR 121
TL +AEK +++ +PP E ++ VF R
Sbjct: 44 TLWQAEKGLVWKQLVNGLPPYKEISVHVFYR 74
>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 120
Score = 26.2 bits (58), Expect = 2.6
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 191 VTDFDSYTYNISSIVNDSEPDWI----KLYSFKEEYGLES 226
DFD Y+IS+ D + K Y + +G +
Sbjct: 35 FADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADE 74
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 25.8 bits (55), Expect = 8.3
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 9/104 (8%)
Query: 95 AEKNNEKVHILSHIPP-----GSEDTMQVFQREYRKIINRFEHTIAAEFNGHTHYEDITI 149
E ++ I H PP D + + ++ F GH H +T
Sbjct: 144 FEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQ 203
Query: 150 FYDK---NNSSRATNVAYNGGSITSYYNVNPN-YRLYKVARGTW 189
+ V Y YY+++P +++ W
Sbjct: 204 YRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQW 247
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex
aeolicus [TaxId: 63363]}
Length = 188
Score = 25.5 bits (55), Expect = 8.4
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 104 ILSHIPPGSEDTMQVFQREYRKIINRFEHTIAAEFNGHTHYEDITIFYD-KNNSSRATNV 162
+LSH P T + R+ F+ +GH H+ I K+ N
Sbjct: 110 LLSHYPAKDPITERYPDRQEMVREIYFKENCDLLIHGHVHWNREGIKCACKDYRIECINA 169
Query: 163 A 163
Sbjct: 170 N 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,332,611
Number of extensions: 62483
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 23
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)