Query psy15420
Match_columns 187
No_of_seqs 114 out of 137
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:34:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4466|consensus 100.0 8.5E-49 1.8E-53 337.7 16.1 167 4-180 28-196 (291)
2 PF08598 Sds3: Sds3-like; Int 100.0 2.9E-39 6.2E-44 266.9 1.5 165 4-174 10-205 (205)
3 TIGR01541 tape_meas_lam_C phag 47.3 2.2E+02 0.0048 25.8 10.5 80 14-94 93-172 (332)
4 KOG3859|consensus 45.2 1.8E+02 0.0038 26.8 8.8 40 72-111 354-396 (406)
5 PF08598 Sds3: Sds3-like; Int 42.6 25 0.00054 28.7 2.9 79 15-96 2-91 (205)
6 PF09731 Mitofilin: Mitochondr 37.0 3.7E+02 0.0081 25.5 11.4 19 16-34 256-274 (582)
7 PF05062 RICH: RICH domain; I 36.1 1.8E+02 0.0038 21.5 8.8 34 63-97 40-73 (82)
8 KOG2008|consensus 35.1 2.1E+02 0.0046 26.5 7.7 63 24-88 33-98 (426)
9 PF07368 DUF1487: Protein of u 33.5 47 0.001 28.5 3.2 35 13-47 43-79 (215)
10 PF14942 Muted: Organelle biog 33.3 2.5E+02 0.0055 22.5 9.5 26 18-43 40-65 (145)
11 PF14942 Muted: Organelle biog 31.2 2.8E+02 0.006 22.2 12.0 71 17-92 65-137 (145)
12 PF06637 PV-1: PV-1 protein (P 30.7 1.9E+02 0.004 27.3 6.7 27 89-115 357-383 (442)
13 PRK13428 F0F1 ATP synthase sub 28.6 4.9E+02 0.011 24.3 13.9 79 15-98 29-107 (445)
14 PF08702 Fib_alpha: Fibrinogen 27.5 3.2E+02 0.0069 21.8 12.0 96 10-107 28-126 (146)
15 KOG1118|consensus 26.6 3.9E+02 0.0084 24.7 7.9 72 35-106 131-209 (366)
16 PF08656 DASH_Dad3: DASH compl 23.7 1.9E+02 0.0041 21.0 4.4 34 17-50 16-51 (78)
17 PRK14628 hypothetical protein; 23.3 1.4E+02 0.0031 23.1 4.0 68 92-180 26-96 (118)
18 cd07600 BAR_Gvp36 The Bin/Amph 22.9 5E+02 0.011 22.4 11.4 78 16-96 115-207 (242)
19 PRK00409 recombination and DNA 22.7 8.1E+02 0.017 24.8 11.4 32 60-91 564-595 (782)
20 TIGR03142 cytochro_ccmI cytoch 22.5 1.9E+02 0.0041 21.8 4.6 31 14-47 39-71 (117)
21 PF07797 DUF1639: Protein of u 22.1 77 0.0017 21.3 2.0 16 162-177 1-16 (50)
22 KOG2072|consensus 22.0 9.3E+02 0.02 25.2 13.9 18 97-114 855-872 (988)
23 KOG3026|consensus 21.9 1.3E+02 0.0028 26.6 3.8 29 20-48 5-38 (262)
24 COG4014 Uncharacterized protei 21.7 1E+02 0.0022 23.2 2.8 31 86-116 61-91 (97)
25 PF10359 Fmp27_WPPW: RNA pol I 20.8 4.9E+02 0.011 24.5 7.8 50 2-51 153-211 (475)
26 PF05062 RICH: RICH domain; I 20.1 3.6E+02 0.0079 19.8 9.2 70 13-83 12-81 (82)
No 1
>KOG4466|consensus
Probab=100.00 E-value=8.5e-49 Score=337.69 Aligned_cols=167 Identities=32% Similarity=0.519 Sum_probs=155.8
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15420 4 LSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLE 83 (187)
Q Consensus 4 ~~~~F~~lKEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e 83 (187)
++..|+++||++|++||++|+++|++|++|+||||++++++|++++++|+++|+||++|++++|+++|++|++||++|||
T Consensus 28 l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~~e~v~~eYe~E~~aAk~e~E 107 (291)
T KOG4466|consen 28 LEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYCVERVEREYECEIKAAKKEYE 107 (291)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccc-ccccccccccCCCCCCCCCCCCCCCCCCccccCCCccCCc-ccccc
Q psy15420 84 NEKSLLYDHMKEELEEKIRRLEEDRNSVDINAD-LWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTVSGP-YIVYM 161 (187)
Q Consensus 84 ~~k~~lke~l~~eLeek~rrLeeeR~~~dl~~~-~w~d~~~~rk~rRr~~~~~p~~~~~~~p~krrKp~~vsgp-~ivy~ 161 (187)
+++.+|+|+++++|++|||+|+|||++||||++ +|++...+|++||+|++|. +.++++.+||| +||||
T Consensus 108 ~~~~lLke~l~seleeKkrkieeeR~smDlts~~~e~~~l~~rk~rrd~~~p~----------k~r~~r~~sa~~~~~y~ 177 (291)
T KOG4466|consen 108 SKKKLLKENLISELEEKKRKIEEERLSMDLTSDSMESKPLYTRKLRRDPNDPE----------KGRDKRNKSAPDQLVYQ 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHhhhcccCCCCcc----------cccccccCCChHHHHHh
Confidence 999999999999999999999999999999987 5777789999999999854 44444456778 99999
Q ss_pred CChhhHHHHHHHHHHHHhc
Q psy15420 162 LRDEEIIEDWTIIKKAMSQ 180 (187)
Q Consensus 162 L~e~eI~eDl~~I~ka~~~ 180 (187)
|++.+|++||++|+++.+.
T Consensus 178 L~d~~i~eD~~~i~k~~s~ 196 (291)
T KOG4466|consen 178 LQDLNILEDLRTINKDESA 196 (291)
T ss_pred hhhhhHHHHHhhhccccCC
Confidence 9999999999999988654
No 2
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=100.00 E-value=2.9e-39 Score=266.95 Aligned_cols=165 Identities=42% Similarity=0.647 Sum_probs=26.1
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15420 4 LSFVPVGLREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLE 83 (187)
Q Consensus 4 ~~~~F~~lKEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e 83 (187)
+|.+|+++||++|+|+|++|+.+|++|++||||||+.++++|++++|.+|.++++|++|++++++++|++|.++|+++|+
T Consensus 10 le~~F~~~Rd~lY~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~i~~~~~~e~~~a~~e~~ 89 (205)
T PF08598_consen 10 LEKQFAELRDQLYRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLESIEREYEAERQQAEQEYE 89 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHH-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccc-------------------cccccCCCCCCCCCCCCCCCCCC
Q psy15420 84 NEKSLLYDHMKEELEEKIRRLEEDRNSVDINADLWFFE-------------------HNKRGSNQNPLSSKRGPKGFNRM 144 (187)
Q Consensus 84 ~~k~~lke~l~~eLeek~rrLeeeR~~~dl~~~~w~d~-------------------~~~rk~rRr~~~~~p~~~~~~~p 144 (187)
+++..|+++|+++|++++++|++||.+||+++++|+.. ..+|++|++.+.+.+. +
T Consensus 90 ~~~~~lre~l~~~l~ek~~~L~~er~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~r~r~~~~~~~------~ 163 (205)
T PF08598_consen 90 SEKRELRERLLEELEEKRRRLEEERENMDISSPSWSLLHPSQFSLTNPASPGGSHSKRATRKLRRRENSPNQI------A 163 (205)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhccchhhhhhhhhhhhccccchhhhhccccccccch------h
Confidence 99999999999999999999999999999998889877 4577778877765442 3
Q ss_pred ccccCCCcc---CC--ccc-------cccCChhhHHHHHHHH
Q psy15420 145 KSRRKAVTV---SG--PYI-------VYMLRDEEIIEDWTII 174 (187)
Q Consensus 145 ~krrKp~~v---sg--p~i-------vy~L~e~eI~eDl~~I 174 (187)
.++|++.++ +| |++ ||+|++.||++||++|
T Consensus 164 ~~kr~~~~~~~l~~~~~~~~~pa~~~~~~l~~~eI~eDl~~i 205 (205)
T PF08598_consen 164 QRKRKNKEVSDLSGPAPYIGFPAAPNVYMLREEEIEEDLEAI 205 (205)
T ss_dssp ------------------------------------------
T ss_pred ccccCCCCCCcccccCCcccchhhhhccCCCHHHHHHHHHcC
Confidence 444444333 33 999 9999999999999987
No 3
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=47.31 E-value=2.2e+02 Score=25.79 Aligned_cols=80 Identities=8% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15420 14 QLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHM 93 (187)
Q Consensus 14 qlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~l 93 (187)
+-|...+.+|..+.+.-..=+..+|.+.+..|....++|+...+-|-+ .++.....+..=..+++.+|-......-..+
T Consensus 93 ~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~-~~d~~q~dw~~G~~~a~~~y~d~a~n~a~~~ 171 (332)
T TIGR01541 93 RTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHAYYA-AEDALQGDWLAGARSGLADYGETATNVASAA 171 (332)
T ss_pred HHHHHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666655434446678888888888777777776543211 2334444555555555555555544444333
Q ss_pred H
Q psy15420 94 K 94 (187)
Q Consensus 94 ~ 94 (187)
.
T Consensus 172 ~ 172 (332)
T TIGR01541 172 A 172 (332)
T ss_pred H
Confidence 3
No 4
>KOG3859|consensus
Probab=45.19 E-value=1.8e+02 Score=26.80 Aligned_cols=40 Identities=33% Similarity=0.398 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhhhhhhccc
Q psy15420 72 NAEEQATRQNLENEKSLLYDHM---KEELEEKIRRLEEDRNSV 111 (187)
Q Consensus 72 ~~E~~aA~~e~e~~k~~lke~l---~~eLeek~rrLeeeR~~~ 111 (187)
++|...|..+.-.+-..|+..- ...|++++|.|+||...+
T Consensus 354 E~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f 396 (406)
T KOG3859|consen 354 EAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAF 396 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333332 234677788888876543
No 5
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=42.61 E-value=25 Score=28.74 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15420 15 LYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMR-----------IRTEVAAILRQYKLNNVQNQYNAEEQATRQNLE 83 (187)
Q Consensus 15 lY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~-----------~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e 83 (187)
-..|+|+.|+.+-.++++- -|..+|..|+.++. ..+..++-.++.++..+...|+..++.+...|+
T Consensus 2 ~~~~~l~~le~~F~~~Rd~---lY~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~i~~~~~ 78 (205)
T PF08598_consen 2 EALDDLAKLEKQFAELRDQ---LYRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLESIEREYE 78 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHHHH------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999988763 48888888877665 466677777788888888888888888888888
Q ss_pred HHHHHHHHHHHHH
Q psy15420 84 NEKSLLYDHMKEE 96 (187)
Q Consensus 84 ~~k~~lke~l~~e 96 (187)
.+...+.....+.
T Consensus 79 ~e~~~a~~e~~~~ 91 (205)
T PF08598_consen 79 AERQQAEQEYESE 91 (205)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 8776665554444
No 6
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.02 E-value=3.7e+02 Score=25.52 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q psy15420 16 YRERIVEVESKLNEVELGQ 34 (187)
Q Consensus 16 Y~ErL~~L~~qL~el~~Gt 34 (187)
..+++.+|.++|+++...-
T Consensus 256 a~~~i~~L~~~l~~l~~~~ 274 (582)
T PF09731_consen 256 AKERIDALQKELAELKEEE 274 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766543
No 7
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=36.08 E-value=1.8e+02 Score=21.45 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15420 63 KLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEEL 97 (187)
Q Consensus 63 ~l~~i~~ey~~E~~aA~~e~e~~k~~lke~l~~eL 97 (187)
.+..|.++|.-++..+... +.++..|-....++|
T Consensus 40 kL~~Ik~~YL~~l~~~~~k-~~~~~~l~~k~k~el 73 (82)
T PF05062_consen 40 KLSAIKTEYLYELDVSKEK-ESEKAELPSKIKSEL 73 (82)
T ss_pred HHHHHHHHHHHHHHHHhHH-HHHHHHhHHHHHHHH
Confidence 3445555555555544444 334444444444443
No 8
>KOG2008|consensus
Probab=35.07 E-value=2.1e+02 Score=26.46 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=42.2
Q ss_pred HHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy15420 24 ESKLNEVEL---GQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSL 88 (187)
Q Consensus 24 ~~qL~el~~---GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~ 88 (187)
+.+|+.+++ .|--++-..|.+|=..+-.-+.-++=| |.+.+++++...|.|.|.+.|+....-
T Consensus 33 E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf--~elk~~er~~r~e~QkAa~~FeRat~v 98 (426)
T KOG2008|consen 33 ETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPF--WELKRVERQARLEAQKAAQDFERATEV 98 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 344556666666666666666555555 567788899999999999999876544
No 9
>PF07368 DUF1487: Protein of unknown function (DUF1487); InterPro: IPR009961 This family consists of several uncharacterised proteins from Drosophila melanogaster. The function of this family is unknown.
Probab=33.51 E-value=47 Score=28.55 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHH
Q psy15420 13 EQLYRERIVEVESKLNEVEL--GQAKEYLLPLQKLQD 47 (187)
Q Consensus 13 EqlY~ErL~~L~~qL~el~~--GthpEYl~~l~~LEe 47 (187)
|.+..+-+..+..+|..+.. .+||-|++-|+.|+.
T Consensus 43 Esireefi~rvr~~m~pl~~~va~Hpny~rsl~~i~~ 79 (215)
T PF07368_consen 43 ESIREEFIERVRSRMKPLSPQVANHPNYLRSLKKIKC 79 (215)
T ss_pred HHHHHHHHHHHHHhCccCChhhccCcHHHHHHHHHHh
Confidence 56777778888888988855 999999999999886
No 10
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=33.32 E-value=2.5e+02 Score=22.46 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy15420 18 ERIVEVESKLNEVELGQAKEYLLPLQ 43 (187)
Q Consensus 18 ErL~~L~~qL~el~~GthpEYl~~l~ 43 (187)
+.|.++.....++..-..|.-...+.
T Consensus 40 ~~L~~~~~~~~e~~e~~lp~~~~~~~ 65 (145)
T PF14942_consen 40 RVLENLTEMISETNEHILPRCIELMQ 65 (145)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35566666666666666666555544
No 11
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=31.19 E-value=2.8e+02 Score=22.24 Aligned_cols=71 Identities=8% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15420 17 RERIVEVESKLNEVELGQAKEYLLPLQKLQDNM--RIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDH 92 (187)
Q Consensus 17 ~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~--~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~ 92 (187)
.+.|.++.++|+.+.++-|- +..-+... +..+..+.--+.-..+.+..+.....+....+|......|+|.
T Consensus 65 ~~~L~~l~~~l~~a~~~~~~-----l~~~e~~~~~~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~ 137 (145)
T PF14942_consen 65 QQNLEQLLERLQAANSMCSR-----LQQKEQEKQKDDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQ 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766655432 22222221 3444444444444444444444445555555555555555443
No 12
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.71 E-value=1.9e+02 Score=27.34 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccc
Q psy15420 89 LYDHMKEELEEKIRRLEEDRNSVDINA 115 (187)
Q Consensus 89 lke~l~~eLeek~rrLeeeR~~~dl~~ 115 (187)
=+|.|-.+|++|+|.++.-+-.+++.+
T Consensus 357 erd~L~keLeekkreleql~~q~~v~~ 383 (442)
T PF06637_consen 357 ERDSLAKELEEKKRELEQLKMQLAVKT 383 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 468899999999999999999999984
No 13
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=28.63 E-value=4.9e+02 Score=24.33 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy15420 15 LYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMK 94 (187)
Q Consensus 15 lY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~l~ 94 (187)
+..+|=..+...|++.. +-...+.+++.++...+.-+..-.+--++....+...+.+.+..+-+.+...+++.-.
T Consensus 29 ~l~~R~~~I~~~L~eAe-----~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~ 103 (445)
T PRK13428 29 LMAARQDTVRQQLAESA-----TAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGA 103 (445)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777776666 3466666666666666666655555555555555554444444444444444444444
Q ss_pred HHHH
Q psy15420 95 EELE 98 (187)
Q Consensus 95 ~eLe 98 (187)
..++
T Consensus 104 ~~Ie 107 (445)
T PRK13428 104 RQVQ 107 (445)
T ss_pred HHHH
Confidence 4433
No 14
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=27.48 E-value=3.2e+02 Score=21.76 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy15420 10 GLREQLYRERIVEVESKLNEVEL--GQAKEYLLPLQKLQDNMRIRTEVA-AILRQYKLNNVQNQYNAEEQATRQNLENEK 86 (187)
Q Consensus 10 ~lKEqlY~ErL~~L~~qL~el~~--GthpEYl~~l~~LEe~~~~Rl~~a-~i~rey~l~~i~~ey~~E~~aA~~e~e~~k 86 (187)
.=-++=+..+|..|+..|.++.. .++-+|+..+.+.=.....-..-. .++-+|.-+. ++....-.++-.-.+++.+
T Consensus 28 ~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l-~~~~~~~~e~~i~~~~~~I 106 (146)
T PF08702_consen 28 DKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSL-RKMIIYILETKIINQPSNI 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHH-HHHHHHHHHHHHhhhHhHH
Confidence 34566788999999999999977 444555555554433332221212 4555555442 2232344555677888889
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy15420 87 SLLYDHMKEELEEKIRRLEED 107 (187)
Q Consensus 87 ~~lke~l~~eLeek~rrLeee 107 (187)
..|+..+. ....||.+||.+
T Consensus 107 ~~Lq~~~~-~~~~ki~~Le~~ 126 (146)
T PF08702_consen 107 RVLQNILR-SNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHH
Confidence 99987654 558889999875
No 15
>KOG1118|consensus
Probab=26.64 E-value=3.9e+02 Score=24.67 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=47.5
Q ss_pred CHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh
Q psy15420 35 AKEYLLPLQKL-QDNMR------IRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEE 106 (187)
Q Consensus 35 hpEYl~~l~~L-Ee~~~------~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~l~~eLeek~rrLee 106 (187)
..-||++|+.| ..+.+ ..|+--++--+|....+.+.=+.|+.+|..-||+-+.+..+.|+.-++--+-+++.
T Consensus 131 kq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~dEelrqA~eKfEESkE~aE~sM~nlle~d~eqvsq 209 (366)
T KOG1118|consen 131 KQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKDEELRQALEKFEESKELAEDSMFNLLENDVEQVSQ 209 (366)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34566666666 22222 12333344556777777776688999999999999999999998888755544443
No 16
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.71 E-value=1.9e+02 Score=21.02 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHH
Q psy15420 17 RERIVEVESKLNEV--ELGQAKEYLLPLQKLQDNMR 50 (187)
Q Consensus 17 ~ErL~~L~~qL~el--~~GthpEYl~~l~~LEe~~~ 50 (187)
-+.|..|...+..| ....+++-+..++.||...-
T Consensus 16 a~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~g 51 (78)
T PF08656_consen 16 ADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIG 51 (78)
T ss_pred HHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 46788899999999 56778888888888887654
No 17
>PRK14628 hypothetical protein; Provisional
Probab=23.33 E-value=1.4e+02 Score=23.14 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhhhhhccccccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCcc-CCccccccCChhhHHHH
Q psy15420 92 HMKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTV-SGPYIVYMLRDEEIIED 170 (187)
Q Consensus 92 ~l~~eLeek~rrLeeeR~~~dl~~~~w~d~~~~rk~rRr~~~~~p~~~~~~~p~krrKp~~v-sgp~ivy~L~e~eI~eD 170 (187)
++...++++...++++=....++..+.|.-....= .-..+.+.| =-|-++ +|.|+++|
T Consensus 26 k~qq~mq~k~~elqe~l~~~~v~g~sggG~VkV~~------------------nG~~ei~~I~Idp~~l---~D~E~LeD 84 (118)
T PRK14628 26 KMQEELQKKIQELEESFSQIEVEASVGGGAVRIVA------------------TCDRRVKDIEIDEDLK---EDFETLKD 84 (118)
T ss_pred HHHHHHHHHHHHHHHHHHceEEEEEecCceEEEEE------------------EcCceEEEEEECHHHc---CCHHHHHH
Confidence 34556777788888877777777443232222110 001111111 114443 69999999
Q ss_pred H--HHHHHHHhc
Q psy15420 171 W--TIIKKAMSQ 180 (187)
Q Consensus 171 l--~~I~ka~~~ 180 (187)
+ .||+.|...
T Consensus 85 LIiaA~NdA~~k 96 (118)
T PRK14628 85 LLIAGMNEVMEK 96 (118)
T ss_pred HHHHHHHHHHHH
Confidence 6 677777654
No 18
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.93 E-value=5e+02 Score=22.45 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HH----HHHHHH--HHHHHHHHHHHHHH--------HHHHHHHHHHH
Q psy15420 16 YRERIVEVESKLNEVELGQAKEYLLPLQKLQD-NM----RIRTEV--AAILRQYKLNNVQN--------QYNAEEQATRQ 80 (187)
Q Consensus 16 Y~ErL~~L~~qL~el~~GthpEYl~~l~~LEe-~~----~~Rl~~--a~i~rey~l~~i~~--------ey~~E~~aA~~ 80 (187)
-.+||++.+.+....-. ..|+.+|+.+-+ .+ +.|-.| .++=-++.-..+.+ .+..|++.|..
T Consensus 115 a~~kIa~ar~~~D~~I~---~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEd 191 (242)
T cd07600 115 AEEKIAEARLEQDQLIQ---KEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSAEPAEKQEAARVEVETAED 191 (242)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 35677777766666554 788888887665 22 223333 33333333333332 37888999999
Q ss_pred hhHHHHHHHHHHHHHH
Q psy15420 81 NLENEKSLLYDHMKEE 96 (187)
Q Consensus 81 e~e~~k~~lke~l~~e 96 (187)
+|++-.......|..-
T Consensus 192 ef~~a~E~a~~~M~~i 207 (242)
T cd07600 192 EFVSATEEAVELMKEV 207 (242)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 9998887665555444
No 19
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.70 E-value=8.1e+02 Score=24.78 Aligned_cols=32 Identities=6% Similarity=0.086 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy15420 60 RQYKLNNVQNQYNAEEQATRQNLENEKSLLYD 91 (187)
Q Consensus 60 rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke 91 (187)
++-.++....++..-+..|..+-+.-...+++
T Consensus 564 ~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 564 EDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555554444444443
No 20
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=22.52 E-value=1.9e+02 Score=21.82 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHH
Q psy15420 14 QLYRERIVEVESKLNEVELGQ--AKEYLLPLQKLQD 47 (187)
Q Consensus 14 qlY~ErL~~L~~qL~el~~Gt--hpEYl~~l~~LEe 47 (187)
.+|+++|++|+.++ ..|. ..||-....+|+.
T Consensus 39 ~iyr~qL~ELe~d~---~~G~l~~~e~~~~~~El~r 71 (117)
T TIGR03142 39 AVYRDRLAELERDL---AEGLLDEAEAEAARAELQR 71 (117)
T ss_pred HHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHH
Confidence 47777777777663 3443 3444444444443
No 21
>PF07797 DUF1639: Protein of unknown function (DUF1639); InterPro: IPR012438 This approximately 50-residue region is found in a number of sequences derived from hypothetical plant proteins. This region features a highly basic 5 amino-acid stretch towards its centre.
Probab=22.07 E-value=77 Score=21.27 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.0
Q ss_pred CChhhHHHHHHHHHHH
Q psy15420 162 LRDEEIIEDWTIIKKA 177 (187)
Q Consensus 162 L~e~eI~eDl~~I~ka 177 (187)
|+-.||++|+-+|.-.
T Consensus 1 Lsr~EieeDf~am~G~ 16 (50)
T PF07797_consen 1 LSRKEIEEDFLAMTGS 16 (50)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 5678999999998644
No 22
>KOG2072|consensus
Probab=21.98 E-value=9.3e+02 Score=25.22 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.1
Q ss_pred HHHHHhhhhhhhcccccc
Q psy15420 97 LEEKIRRLEEDRNSVDIN 114 (187)
Q Consensus 97 Leek~rrLeeeR~~~dl~ 114 (187)
++++-+++.+|+..|+-+
T Consensus 855 ~~ereRr~~eE~r~~~~~ 872 (988)
T KOG2072|consen 855 TEERERRINEERRLMRST 872 (988)
T ss_pred cchhhhcchhcccCCCCc
Confidence 678888899999776655
No 23
>KOG3026|consensus
Probab=21.94 E-value=1.3e+02 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=19.0
Q ss_pred HHHHHHHHHHh-----hcCCCHHHHHHHHHHHHH
Q psy15420 20 IVEVESKLNEV-----ELGQAKEYLLPLQKLQDN 48 (187)
Q Consensus 20 L~~L~~qL~el-----~~GthpEYl~~l~~LEe~ 48 (187)
|++-+.||++| .++++.||+..-.+|.+-
T Consensus 5 L~sYK~QLqqVeaaL~~dP~NeEllkLe~DLkEv 38 (262)
T KOG3026|consen 5 LASYKLQLQQVEAALQGDPENEELLKLEKDLKEV 38 (262)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 34444444444 358999999888777654
No 24
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.71 E-value=1e+02 Score=23.23 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccc
Q psy15420 86 KSLLYDHMKEELEEKIRRLEEDRNSVDINAD 116 (187)
Q Consensus 86 k~~lke~l~~eLeek~rrLeeeR~~~dl~~~ 116 (187)
.++-++.=+.++.+++|+.+|+...+|+...
T Consensus 61 ~ke~re~~~~evverirk~kE~~e~vDlg~~ 91 (97)
T COG4014 61 IKEEREEDIDEVVERIRKEKEEFELVDLGLG 91 (97)
T ss_pred hHHHhhccHHHHHHHHHHHHHhhhhcccccc
Confidence 3345566678899999999999999998853
No 25
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=20.77 E-value=4.9e+02 Score=24.54 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=36.1
Q ss_pred Ccc-ccCchhHHHHHHHHHHHHHHHHHHHhhc--C------CCHHHHHHHHHHHHHHHH
Q psy15420 2 CIL-SFVPVGLREQLYRERIVEVESKLNEVEL--G------QAKEYLLPLQKLQDNMRI 51 (187)
Q Consensus 2 ~~~-~~~F~~lKEqlY~ErL~~L~~qL~el~~--G------thpEYl~~l~~LEe~~~~ 51 (187)
|++ ........-.+-++|+.+|+.++..+.. | ..|++...++.|+.....
T Consensus 153 C~m~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (475)
T PF10359_consen 153 CLMGDNDPRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISS 211 (475)
T ss_pred eEeecCCcchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHH
Confidence 666 5667778888999999999999988755 2 356666666666654443
No 26
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=20.12 E-value=3.6e+02 Score=19.79 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy15420 13 EQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLE 83 (187)
Q Consensus 13 EqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e 83 (187)
+.++...|..++++|+--+.-.+-.++..|..+..+|=..|.++.-- +-.++.+-.+-.+|+.||-..|.
T Consensus 12 ~~y~~kiL~ei~~~L~k~kHtq~v~LikkL~~Ik~~YL~~l~~~~~k-~~~~~~l~~k~k~eldaAfekFK 81 (82)
T PF05062_consen 12 DEYMEKILSEIKKQLDKRKHTQNVALIKKLSAIKTEYLYELDVSKEK-ESEKAELPSKIKSELDAAFEKFK 81 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHhHHHHHHHHHHHHHHhc
Confidence 44666777888888888777778888888888888888888887654 35777888888889999888774
Done!