Query psy15420
Match_columns 187
No_of_seqs 114 out of 137
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:34:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xus_A Breast cancer metastasi 98.9 3.4E-10 1.2E-14 74.4 2.1 32 4-35 18-49 (49)
2 3o0z_A RHO-associated protein 81.7 14 0.00048 29.4 9.9 18 15-32 3-20 (168)
3 3ghg_A Fibrinogen alpha chain; 63.5 23 0.00077 33.1 7.8 92 12-107 58-153 (562)
4 1m1j_B Fibrinogen beta chain; 51.2 1.4E+02 0.0049 27.1 11.7 93 16-110 98-193 (464)
5 3etw_A Adhesin A; antiparallel 48.4 83 0.0028 23.5 8.7 78 18-95 9-93 (119)
6 2l5g_A GPS2 protein, G protein 38.6 12 0.00042 22.7 1.2 24 17-40 14-37 (38)
7 3f42_A Protein HP0035; helicob 37.5 54 0.0019 23.5 4.8 65 95-180 13-80 (99)
8 1deq_A Fibrinogen (alpha chain 32.3 2.7E+02 0.0093 24.8 10.1 23 13-35 62-84 (390)
9 1zww_A SH3-containing GRB2-lik 28.4 2.3E+02 0.0077 22.8 7.8 66 33-98 134-206 (256)
10 3iox_A AGI/II, PA; alpha helix 26.7 3.8E+02 0.013 24.7 11.2 35 13-47 4-41 (497)
11 2kk1_A Tyrosine-protein kinase 25.0 1.4E+02 0.0049 22.7 5.5 36 15-50 88-131 (135)
12 3ghg_B Fibrinogen beta chain; 22.4 3.4E+02 0.012 24.7 8.3 91 17-109 94-187 (461)
13 1m1j_A Fibrinogen alpha subuni 21.1 4.8E+02 0.017 23.9 13.1 91 12-107 59-154 (491)
14 3onj_A T-snare VTI1; helix, HA 20.8 2.2E+02 0.0075 19.8 11.4 46 12-57 6-51 (97)
15 1xaw_A Occludin; coiled-coil, 20.8 2.9E+02 0.0098 21.1 8.5 21 18-39 73-93 (140)
No 1
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=98.92 E-value=3.4e-10 Score=74.41 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=27.1
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy15420 4 LSFVPVGLREQLYRERIVEVESKLNEVELGQA 35 (187)
Q Consensus 4 ~~~~F~~lKEqlY~ErL~~L~~qL~el~~Gth 35 (187)
||.+|++||||+|+|||++|+++|++|.+|+|
T Consensus 18 LEkqF~~LkEqlY~ERl~ql~~~Leel~~g~~ 49 (49)
T 2xus_A 18 LEKQFSELKEKLFRERLSQLRLRLEEVGAERA 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57899999999999999999999999999987
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.65 E-value=14 Score=29.44 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy15420 15 LYRERIVEVESKLNEVEL 32 (187)
Q Consensus 15 lY~ErL~~L~~qL~el~~ 32 (187)
.|.||+.+|+++|.++..
T Consensus 3 ~~neKi~~LekQL~E~n~ 20 (168)
T 3o0z_A 3 LANEKLSQLQKQLEEAND 20 (168)
T ss_dssp -------CTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 378999999999988866
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.54 E-value=23 Score=33.12 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy15420 12 REQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVA----AILRQYKLNNVQNQYNAEEQATRQNLENEKS 87 (187)
Q Consensus 12 KEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a----~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~ 87 (187)
-|+=...+|+.|+.+++++.+ ++-+--.-.+.+-+..+.++..+ ..+-+|-- .+++.++.=......++ +.++
T Consensus 58 qErDltkrINELKnqLEdlsK-nsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~-ELRRrIqyLKekVdnQl-snIr 134 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQK-NNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSE-DLRSRIEVLKRKVIEKV-QHIQ 134 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHH-HHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHH-HHHHHHHHHHHHHHHHH-HHHH
Confidence 356678899999999999944 33332222233333333333333 33322221 11111111111112222 4444
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q psy15420 88 LLYDHMKEELEEKIRRLEED 107 (187)
Q Consensus 88 ~lke~l~~eLeek~rrLeee 107 (187)
.|+.. +.++--+|+|||.|
T Consensus 135 vLQsn-Ledq~~kIQRLEvD 153 (562)
T 3ghg_A 135 LLQKN-VRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHH
Confidence 45444 44556778899876
No 4
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=51.16 E-value=1.4e+02 Score=27.07 Aligned_cols=93 Identities=14% Similarity=0.244 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy15420 16 YRERIVEVESKLNEVELG--QAKEYLLPLQKLQDNMRIRTEV-AAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDH 92 (187)
Q Consensus 16 Y~ErL~~L~~qL~el~~G--thpEYl~~l~~LEe~~~~Rl~~-a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~ 92 (187)
-...|.+|+..|++|.+- +.-+|+..|+.--+.++..+.- .....+|... ++.......+...+.+.+.+..|..
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~-~e~~~~~i~~~~~~~~~~~i~~L~~- 175 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTE-MELHYNYIKDNLDNNIPSSLRVLRA- 175 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTHHHHHHHHHHH-
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHH-HHHHHHHHHHHHhccchhHHHHHHH-
Confidence 455688999999999653 3345655554444433333222 2223333322 1111111222334456666666664
Q ss_pred HHHHHHHHHhhhhhhhcc
Q psy15420 93 MKEELEEKIRRLEEDRNS 110 (187)
Q Consensus 93 l~~eLeek~rrLeeeR~~ 110 (187)
++..+..||.+|+..-..
T Consensus 176 ~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788888888886543
No 5
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=48.41 E-value=83 Score=23.53 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy15420 18 ERIVEVESKLNEVELGQAKEYLLPLQKLQDNM-------RIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLY 90 (187)
Q Consensus 18 ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~-------~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lk 90 (187)
.+|.+|+.+++.|..-.+..|...-+.-|.-. ..+-.+.+......-..=..-|..+...-...|...++.|-
T Consensus 9 ~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd 88 (119)
T 3etw_A 9 GELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999888887654444322 11222222221111111122355555555556666655555
Q ss_pred HHHHH
Q psy15420 91 DHMKE 95 (187)
Q Consensus 91 e~l~~ 95 (187)
+.|..
T Consensus 89 ~~ik~ 93 (119)
T 3etw_A 89 AEMEQ 93 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 6
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=38.61 E-value=12 Score=22.75 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHH
Q psy15420 17 RERIVEVESKLNEVELGQAKEYLL 40 (187)
Q Consensus 17 ~ErL~~L~~qL~el~~GthpEYl~ 40 (187)
+|-+.+|+.+|++|+...|.-|+.
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466788999999999988888864
No 7
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=37.46 E-value=54 Score=23.53 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHHhhhhhhhccccccccccccccccccCCCCCCCCCCCCCCCCCCccccCCCcc-CCccccccCChhhHHHHH--
Q psy15420 95 EELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFNRMKSRRKAVTV-SGPYIVYMLRDEEIIEDW-- 171 (187)
Q Consensus 95 ~eLeek~rrLeeeR~~~dl~~~~w~d~~~~rk~rRr~~~~~p~~~~~~~p~krrKp~~v-sgp~ivy~L~e~eI~eDl-- 171 (187)
..++++..+++++=..+.++..+.+.-.... + .-+...+.| =.|.++ .|.|+++|+
T Consensus 13 q~mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt---------~---------~G~~ev~~i~Idp~~~---eD~E~LeDLI~ 71 (99)
T 3f42_A 13 DGMKKEFSQLEEKNKDTIHTSKSGGGMVSVS---------F---------NGLGELVDLQIDDSLL---EDKEAMQIYLM 71 (99)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEGGGTEEEE---------E---------ETTSCEEEEEECGGGG---GCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCEEEEEECCCEEEEE---------E---------ecCceEEEEEECHHHh---CCHHHHHHHHH
Confidence 7788999999999999999854323222211 0 001111111 126665 799999996
Q ss_pred HHHHHHHhc
Q psy15420 172 TIIKKAMSQ 180 (187)
Q Consensus 172 ~~I~ka~~~ 180 (187)
.|++.|...
T Consensus 72 aA~ndA~~k 80 (99)
T 3f42_A 72 SALNDGYKA 80 (99)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667776543
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.30 E-value=2.7e+02 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Q psy15420 13 EQLYRERIVEVESKLNEVELGQA 35 (187)
Q Consensus 13 EqlY~ErL~~L~~qL~el~~Gth 35 (187)
++=+.-++..|+..|..+.+-..
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Confidence 46678899999999998876433
No 9
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=28.44 E-value=2.3e+02 Score=22.79 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy15420 33 GQAKEYLLPLQKL-QDN----MRIRTEVAAILRQYKL--NNVQNQYNAEEQATRQNLENEKSLLYDHMKEELE 98 (187)
Q Consensus 33 GthpEYl~~l~~L-Ee~----~~~Rl~~a~i~rey~l--~~i~~ey~~E~~aA~~e~e~~k~~lke~l~~eLe 98 (187)
-....|+.||..+ +.. .+.|-.+...--+|-. ..+....+.|+..|...|+.-...+...|..-+.
T Consensus 134 ~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~~fe~~~e~~~~~m~~l~~ 206 (256)
T 1zww_A 134 EVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLE 206 (256)
T ss_dssp HHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445688998885 423 3334444443333332 2223334789999999999998888888776544
No 10
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=26.70 E-value=3.8e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHH
Q psy15420 13 EQLYRERIVEVESKLNEVELGQ---AKEYLLPLQKLQD 47 (187)
Q Consensus 13 EqlY~ErL~~L~~qL~el~~Gt---hpEYl~~l~~LEe 47 (187)
|.-|+.+|+..+++|+-|+.-+ -.+|-..+++.+.
T Consensus 4 ~a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 4 EADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6779999999999999998744 3578888888775
No 11
>2kk1_A Tyrosine-protein kinase ABL2; methods development, tyrosin protein kinase ABL2, F-actin binding domain, NESG, alternative splicing, ATP-binding; NMR {Homo sapiens}
Probab=25.04 E-value=1.4e+02 Score=22.69 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhh--------cCCCHHHHHHHHHHHHHHH
Q psy15420 15 LYRERIVEVESKLNEVE--------LGQAKEYLLPLQKLQDNMR 50 (187)
Q Consensus 15 lY~ErL~~L~~qL~el~--------~GthpEYl~~l~~LEe~~~ 50 (187)
.|+|-+..|+..+++|+ -|++++|-..|..+.+--|
T Consensus 88 aFREavsrLe~slqeL~~~sa~ag~p~~~~~~n~LLssVKEISD 131 (135)
T 2kk1_A 88 AFREAVSKLELSLQELQVSSAAAGVPGTNPVLNNLLSCVQEISD 131 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSSSCTTCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999 3689999999977766544
No 12
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.35 E-value=3.4e+02 Score=24.72 Aligned_cols=91 Identities=18% Similarity=0.342 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy15420 17 RERIVEVESKLNEVEL--GQAKEYLLPLQKLQDNMRIRTEVAA-ILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHM 93 (187)
Q Consensus 17 ~ErL~~L~~qL~el~~--GthpEYl~~l~~LEe~~~~Rl~~a~-i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~l 93 (187)
..-|.+|+..|++|.+ -++-+|+..|+..-..++....-++ +..+|. ..++..+.-+.......+++.+..|+. +
T Consensus 94 ~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~-~mle~~~~~~~~~~~~~~~~~i~~l~~-~ 171 (461)
T 3ghg_B 94 RNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYS-SELEKHQLYIDETVNSNIPTNLRVLRS-I 171 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHTHHHHHHHTHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHH-HHHHHHHHHHHhhhhccchhHHHHHHH-H
Confidence 4568899999999976 4556677777766555554443321 112221 123333333444456677777777765 4
Q ss_pred HHHHHHHHhhhhhhhc
Q psy15420 94 KEELEEKIRRLEEDRN 109 (187)
Q Consensus 94 ~~eLeek~rrLeeeR~ 109 (187)
+..+..||.+|+..-.
T Consensus 172 ~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 172 LENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566778887777654
No 13
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.08 E-value=4.8e+02 Score=23.88 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHH
Q psy15420 12 REQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEV----AAILRQYKLNN-VQNQYNAEEQATRQNLENEK 86 (187)
Q Consensus 12 KEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~----a~i~rey~l~~-i~~ey~~E~~aA~~e~e~~k 86 (187)
-|+=+..++..|++.|..+.+-..--|.-...-. +.++.++.. -.+|-+|--+. -...|..+. ...++ ..+
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~-~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k--Vd~qi-~~I 134 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETI-NILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR--VATQV-NRI 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH--HHHHH-HHH
Confidence 3677889999999999999775554443322222 222222222 22222222110 111222222 22333 555
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy15420 87 SLLYDHMKEELEEKIRRLEED 107 (187)
Q Consensus 87 ~~lke~l~~eLeek~rrLeee 107 (187)
..|+..|. .+--+|+|||.+
T Consensus 135 rvLq~~l~-~q~skIQRLE~d 154 (491)
T 1m1j_A 135 KALQNSIQ-EQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHH
Confidence 66665544 456779999986
No 14
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.79 E-value=2.2e+02 Score=19.83 Aligned_cols=46 Identities=9% Similarity=0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15420 12 REQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAA 57 (187)
Q Consensus 12 KEqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~ 57 (187)
-|+-|+.-.++|...+..+...+.++=-..++.++...++=..+..
T Consensus 6 YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~ 51 (97)
T 3onj_A 6 YESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLD 51 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999877777878888888888887665554
No 15
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=20.77 E-value=2.9e+02 Score=21.13 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhcCCCHHHH
Q psy15420 18 ERIVEVESKLNEVELGQAKEYL 39 (187)
Q Consensus 18 ErL~~L~~qL~el~~GthpEYl 39 (187)
.++.+|..+|..+..|+ ++|.
T Consensus 73 ~~F~~Ld~~L~~l~~~s-~e~~ 93 (140)
T 1xaw_A 73 KELSRLDKELDDYREES-EEYM 93 (140)
T ss_dssp HHHHHHHHHHHHSCTTS-HHHH
T ss_pred HHHHHHHHHHHhCCCCC-HHHH
Confidence 47788888888887665 7886
Done!