Query psy15420
Match_columns 187
No_of_seqs 114 out of 137
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 20:35:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15420.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15420hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2asba2 d.52.3.1 (A:184-262) T 23.1 20 0.0014 23.5 2.0 13 34-46 1-13 (79)
2 d1yt3a2 a.60.8.3 (A:295-375) R 15.5 66 0.0048 20.2 3.3 35 16-50 9-45 (81)
3 d1vcsa1 a.47.2.1 (A:8-96) Vesi 13.9 1.5E+02 0.011 18.8 8.7 45 13-57 4-48 (89)
4 d2idob1 a.237.1.1 (B:2-76) Hom 13.4 59 0.0043 20.8 2.5 26 14-39 50-75 (75)
5 d1v66a_ a.140.2.1 (A:) p53 bin 12.8 1.4E+02 0.01 18.5 4.2 21 26-46 41-61 (65)
6 d1iq0a3 d.67.2.1 (A:1-96) Argi 12.7 27 0.002 22.6 0.7 19 152-170 72-90 (96)
7 d1rw6a_ a.47.4.1 (A:) CAPPD, a 11.2 2.8E+02 0.021 20.3 6.7 22 33-54 13-34 (192)
8 d2gmga1 a.4.5.82 (A:1-105) Hyp 10.9 62 0.0045 22.0 2.1 22 163-184 41-62 (105)
9 d1f7ua3 d.67.2.1 (A:2-135) Arg 9.7 67 0.0049 22.2 2.0 27 152-178 103-130 (134)
10 d2oeea1 a.281.1.2 (A:3-112) Hy 9.7 1.8E+02 0.013 18.5 4.4 65 21-99 44-108 (110)
No 1
>d2asba2 d.52.3.1 (A:184-262) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.07 E-value=20 Score=23.50 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHH
Q psy15420 34 QAKEYLLPLQKLQ 46 (187)
Q Consensus 34 thpEYl~~l~~LE 46 (187)
|||+|++.|=++|
T Consensus 1 T~p~~v~~Lfe~E 13 (79)
T d2asba2 1 THPNLVRKLFSLE 13 (79)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChHHHHHHHHhh
Confidence 6777777765543
No 2
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=15.49 E-value=66 Score=20.21 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHH
Q psy15420 16 YRERIVEVESKLNEVE--LGQAKEYLLPLQKLQDNMR 50 (187)
Q Consensus 16 Y~ErL~~L~~qL~el~--~GthpEYl~~l~~LEe~~~ 50 (187)
|+.-+..|+.-++++- .|-+||.+..-++|++-..
T Consensus 9 yK~~~K~lk~~v~~~Ae~~~IapelLaskkdle~ll~ 45 (81)
T d1yt3a2 9 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHH
Confidence 7788888999998883 3999999999999987543
No 3
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.90 E-value=1.5e+02 Score=18.78 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy15420 13 EQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAA 57 (187)
Q Consensus 13 EqlY~ErL~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~ 57 (187)
|+-|..-.++|..++..+...+-.+=-..+++++...++=-.+.+
T Consensus 4 E~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~ 48 (89)
T d1vcsa1 4 EQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLE 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHH
Confidence 678999999999999999887777888888888888887555443
No 4
>d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
Probab=13.43 E-value=59 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHH
Q psy15420 14 QLYRERIVEVESKLNEVELGQAKEYL 39 (187)
Q Consensus 14 qlY~ErL~~L~~qL~el~~GthpEYl 39 (187)
.+|++||+---..=+.+--|+.|+|.
T Consensus 50 ~yF~eRL~~yR~~s~~l~r~~~p~y~ 75 (75)
T d2idob1 50 TYFMERLRHYRQLSLQLPKGSDPAYQ 75 (75)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTSGGGC
T ss_pred HHHHHHHHHHHHHHhhcCcccCcccC
Confidence 37899999999888889999999984
No 5
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.77 E-value=1.4e+02 Score=18.49 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=14.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHH
Q psy15420 26 KLNEVELGQAKEYLLPLQKLQ 46 (187)
Q Consensus 26 qL~el~~GthpEYl~~l~~LE 46 (187)
=|.-|+.|.||.+..++++|=
T Consensus 41 aL~LL~~~~~~~v~~kIrelY 61 (65)
T d1v66a_ 41 ALHLLKAGCSPAVQMKIKELY 61 (65)
T ss_dssp HHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHH
Confidence 355667788887777777663
No 6
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]}
Probab=12.66 E-value=27 Score=22.64 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=15.2
Q ss_pred ccCCccccccCChhhHHHH
Q psy15420 152 TVSGPYIVYMLRDEEIIED 170 (187)
Q Consensus 152 ~vsgp~ivy~L~e~eI~eD 170 (187)
.+.||+|++-|+...+.++
T Consensus 72 ~~~gpFiNf~l~~~~l~~~ 90 (96)
T d1iq0a3 72 VPVGGYLNFRLRTEALLRE 90 (96)
T ss_dssp EEETTEEEEEECHHHHHHH
T ss_pred EeeCCeEEEEECHHHHHHH
Confidence 3678999999998877654
No 7
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.18 E-value=2.8e+02 Score=20.28 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy15420 33 GQAKEYLLPLQKLQDNMRIRTE 54 (187)
Q Consensus 33 GthpEYl~~l~~LEe~~~~Rl~ 54 (187)
..|..|...-..||+...+++.
T Consensus 13 ~Eh~~f~~Ak~rLee~hr~k~~ 34 (192)
T d1rw6a_ 13 NEHAHFQKAKERLEAKHRERMS 34 (192)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999998887754
No 8
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=10.94 E-value=62 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHHHHHhccccC
Q psy15420 163 RDEEIIEDWTIIKKAMSQRKCD 184 (187)
Q Consensus 163 ~e~eI~eDl~~I~ka~~~~~~~ 184 (187)
.+.+|++|+..|.+...+.+..
T Consensus 41 ~~k~vyehLeHIakslkr~g~~ 62 (105)
T d2gmga1 41 SKKVILEDLKVISKIAKREGMV 62 (105)
T ss_dssp CHHHHHHHHHHHHHHHTTTTEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCe
Confidence 5889999999999998876543
No 9
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.72 E-value=67 Score=22.23 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.1
Q ss_pred ccCCccccccCChhhHHHH-HHHHHHHH
Q psy15420 152 TVSGPYIVYMLRDEEIIED-WTIIKKAM 178 (187)
Q Consensus 152 ~vsgp~ivy~L~e~eI~eD-l~~I~ka~ 178 (187)
.+.||+|+|-++..-+.+. +..|.+..
T Consensus 103 ~~~GpFINf~l~~~~l~~~vl~~Il~~~ 130 (134)
T d1f7ua3 103 EANGPFIQFFFNPQFLAKLVIPDILTRK 130 (134)
T ss_dssp EEETTEEEEEECHHHHHHHHHHHHHHHG
T ss_pred EeeCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 3789999999999887776 47776554
No 10
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus subtilis [TaxId: 1423]}
Probab=9.69 E-value=1.8e+02 Score=18.47 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy15420 21 VEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEE 99 (187)
Q Consensus 21 ~~L~~qL~el~~GthpEYl~~l~~LEe~~~~Rl~~a~i~rey~l~~i~~ey~~E~~aA~~e~e~~k~~lke~l~~eLee 99 (187)
..++.+++..+...+|.+-..+++|+...+. +..+... .+-..|.+.|......+-..+-..+++
T Consensus 44 ~~~q~~~q~~q~~G~~~~~e~~~~l~~~~~~-l~~n~~v-------------~~~~~Ae~~l~~ll~~V~~~I~~~i~e 108 (110)
T d2oeea1 44 RDVQLRLQQKQMAGEEITQEEVTQAQKTVAL-VQQHEKI-------------SQLMEAEQRMSMLIGELNKIIMKPLEE 108 (110)
T ss_dssp HHHCC------------------CHHHHHHH-HHTSHHH-------------HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH-HhcCHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555566666554467666666666655433 4433333 333457777777666666666555543
Done!