RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15420
(187 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 6e-04
Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 49/145 (33%)
Query: 76 QATRQNLENEKSLLYDHM-------KEELEEKIRR----LEEDRN---SVDINA------ 115
+ + +N E S M +E++++ + + L + S+ +N
Sbjct: 325 EDSLENNEGVPS----PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVV 379
Query: 116 -----DLWFFEHNKR------GSNQN--PLSSKRGPKGFNRMKSRRKAVTVSGPYIVYML 162
L+ R G +Q+ P S +R K NR + V+ P+ ++L
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-ERKLKFSNRF------LPVASPFHSHLL 432
Query: 163 RD--EEIIEDWTIIKKAMSQRKCDL 185
+ I +D ++K +S D+
Sbjct: 433 VPASDLINKD--LVKNNVSFNAKDI 455
Score = 35.4 bits (81), Expect = 0.010
Identities = 37/194 (19%), Positives = 58/194 (29%), Gaps = 56/194 (28%)
Query: 4 LSFVPVGLREQLYRERIVEV-ESKLNEVELGQAKEYL-------LPLQKLQDNMRIRTEV 55
L +V L E + +V L E E YL L + LQ+N +
Sbjct: 65 LGYV-SSLVEPSKVGQFDQVLNLCLTEFE----NCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 56 AAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEE-----------------LE 98
+++ Y A A R + S L+ + E E
Sbjct: 120 KELIKNY--------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 99 EKIRRL-EEDRNSVDINADLWFF--EHNKRGSNQNPLSSKRGPKGFNRMK-----SRR-- 148
E +R L + V DL F E + K +G N ++ S
Sbjct: 172 E-LRDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 149 ----KAVTVSGPYI 158
++ +S P I
Sbjct: 228 KDYLLSIPISCPLI 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 7e-04
Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 71/224 (31%)
Query: 12 REQLYRERIVEVESKLNEVELGQAKEYL-LPLQKLQDNMRIRTE----------VAAILR 60
R++LY + +V +K N V Q L L +L+ + + +
Sbjct: 116 RDRLYND--NQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 61 QYKLNNVQNQYN--------AEEQATRQNLENEKSLLY----------DHMK------EE 96
YK VQ + + + LE + LLY DH
Sbjct: 173 SYK---VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 97 LEEKIRRLEEDR---NSVDINADLWFFEHNKRGSNQNPLSSKRGPKGFN---R--MKSRR 148
++ ++RRL + + N + + ++ + + FN + + +R
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQ---------------NAKAWNAFNLSCKILLTTRF 274
Query: 149 KAVT--VSGPYIVYMLRDEEII-----EDWTIIKKAMSQRKCDL 185
K VT +S ++ D + E +++ K + R DL
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Score = 37.5 bits (86), Expect = 0.002
Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 1 PCILSFVPVGLREQLYR---------ERIVEV-ESKLNEVELGQAKEYLLPLQKLQDNMR 50
P LS + +R+ L +++ + ES LN +E + ++ L +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 51 IRTEVAAIL----RQYKLNNVQNQYNAEEQATRQNLENEKSL--LYDHMKEELEEKI--- 101
I T + +++ + + V N+ + +Q E+ S+ +Y +K +LE +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 102 RRLEEDRNS---------VDINADLWFFEH 122
R + + N + D +F+ H
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A
{Homo sapiens}
Length = 49
Score = 33.0 bits (75), Expect = 0.005
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 11 LREQLYRERIVEVESKLNEVELGQA 35
L+E+L+RER+ ++ +L EV +A
Sbjct: 25 LKEKLFRERLSQLRLRLEEVGAERA 49
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.0 bits (77), Expect = 0.025
Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 12 REQLYRERIVEVESKLNEVELGQA-----KEYLLPLQKLQDNMRIRTEVAAILRQYKLNN 66
R +L + + L + E+L LQK ++ MR ++ +L
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKE 359
Query: 67 VQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNS 110
+ + + + ++ ++EK +LE+K + L+++ N+
Sbjct: 360 AEKELHEKFDRLKKLHQDEKK--------KLEDKKKSLDDEVNA 395
Score = 28.6 bits (63), Expect = 1.5
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 25 SKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQ--YKLNNVQNQYNAEEQATRQNL 82
KL E+ P + R E L++ ++ + Q E++A +
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 83 ENEKSLLYDHMKEELEEKIRRLEEDRNSVD 112
E E +D +K+ +++ ++LE+ + S+D
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLD 390
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 0.31
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 12 REQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQY 71
+ + + K+N +E+ L+ + +R+ E A ++ ++Q +
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEI-TYSTETEKLRSDVERLRMSEEEAKNATN-RVLSLQEE- 992
Query: 72 NAEEQATRQNLENEKSLL---YDHMKEELEEKIRRLEEDRNSV 111
A+ + + EK + D K E E+ + L+E +
Sbjct: 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Score = 28.9 bits (65), Expect = 0.99
Identities = 13/95 (13%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 18 ERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQA 77
+I++++ K++E + K L + L+ TE + + + +
Sbjct: 928 NKIMQLQRKIDEQNK-EYKSLLEKMNNLEI--TYSTETEKLRSDVERLRMSEEEAKNATN 984
Query: 78 TRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVD 112
+L+ E + L + + + + + +EE +
Sbjct: 985 RVLSLQEEIAKLRKEL-HQTQTEKKTIEEWADKYK 1018
Score = 27.0 bits (60), Expect = 5.3
Identities = 10/96 (10%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 12 REQLYRERIVEVESKLNEV--ELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQN 69
R +E I ++ +L++ E +E+ + + + + L + + +
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Query: 70 QYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLE 105
+ + + + + +E + ++ +L ++ R +
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 29.6 bits (67), Expect = 0.69
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 11 LREQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQ 70
L + I V++KL +E + L Q D + I ++ + + +
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968
Query: 71 YNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRN 109
A + + Y + E+++++E+ +
Sbjct: 969 --DTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHH 1005
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 0.71
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 36 KEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKE 95
+E++ ++K++ M E+ + KL + + + + ++NLE +
Sbjct: 325 REHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHK-------- 376
Query: 96 ELEEKIRRLEEDRNSV 111
ELEEK R+ E+++ +
Sbjct: 377 ELEEKRRQFEDEKANW 392
Score = 25.9 bits (56), Expect = 9.0
Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 12 REQLYRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQY 71
+L V++ N+ +L ++ + ++ + +++ + ++ V
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKM------EMEMEQVFEMK 345
Query: 72 NAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRN 109
E+ ++ E E ++ MK+ LE + + LEE R
Sbjct: 346 VKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRR 383
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold,
structural genomics, BSG structure funded by NIH; 1.89A
{Aquifex aeolicus} SCOP: d.92.1.15
Length = 150
Score = 27.2 bits (61), Expect = 1.9
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 13/48 (27%)
Query: 73 AEEQATRQN--LENEKSLL----------YDHMKEELEEKI-RRLEED 107
AE QA LE E L YDH K EEK R LE
Sbjct: 94 AERQARELGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEEKKFRELENY 141
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.9 bits (62), Expect = 2.6
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 17 RERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYKLNNVQNQYNAEEQ 76
E V + +K E+E E +++ ++ + ++Q ++ +++ Q EE+
Sbjct: 912 EEMRVRLAAKKQELE-EILHEMEARIEEEEERSQQLQAEKKKMQQ-QMLDLEEQLE-EEE 968
Query: 77 ATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVD 112
A RQ L+ EK + KI+++E+D ++
Sbjct: 969 AARQKLQLEK--------VTADGKIKKMEDDILIME 996
Score = 27.5 bits (61), Expect = 2.9
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 14 QLYRERIVEVESKLNEVELGQAK---EYLLPLQKLQDNMRIRTEVAAILR--QYKLNNVQ 68
E+I E+++++ E++ AK E L +L+D + +R + ++++Q
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 69 NQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADL 117
+E+ A R E +K + EELE LE+ ++ +L
Sbjct: 1130 EDLESEKAA-RNKAEKQKR----DLSEELEALKTELEDTLDTTATQQEL 1173
Score = 27.1 bits (60), Expect = 4.6
Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 31/125 (24%)
Query: 11 LREQL--YRERIVEVESKLNEVELGQAKEYLLPLQKLQDNMRIRTEVAAILRQYK----- 63
+++Q+ E++ E E+ +++L + ++K++D++ I + L + +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQL-EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 64 ------------------LNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLE 105
L ++N++ + L+ E+ ++ELE+ R+LE
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS-----RQELEKIKRKLE 1066
Query: 106 EDRNS 110
+ +
Sbjct: 1067 GESSD 1071
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 26.8 bits (60), Expect = 3.9
Identities = 8/52 (15%), Positives = 21/52 (40%)
Query: 64 LNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINA 115
L + + ++ L + +LL ++ +++ L E D++A
Sbjct: 141 LAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDA 192
>3cmw_A Protein RECA, recombinase A; homologous recombination,
recombination/DNA complex; HET: DNA ADP; 2.80A
{Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Length = 1706
Score = 27.0 bits (60), Expect = 5.2
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 80 QNLENEKSLLYDH--MKEELEEKIRRLEEDRNSVDINADLWFFEHNKRGSNQNP 131
Q N + L D+ +E+E+K+R L + + S +
Sbjct: 624 QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTTGSTGSMGHTTGSMSAIDE 677
>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded
beta sheet, four helix bundle, structural genomics; NMR
{Thermotoga maritima} SCOP: d.92.1.15
Length = 172
Score = 25.8 bits (57), Expect = 6.9
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 13/48 (27%)
Query: 73 AEEQATRQN--LENEKSLL----------YDHMKEELEEKI-RRLEED 107
EE A N E E + YDH E+ K ++
Sbjct: 103 VEENAREFNNTFEKELLEVVIHGILHLAGYDHEFEDKNSKEMFEKQKK 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,814,263
Number of extensions: 159614
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 91
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)