RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15420
         (187 letters)



>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 27.7 bits (61), Expect = 0.80
 Identities = 10/56 (17%), Positives = 20/56 (35%)

Query: 62  YKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINADL 117
            ++     +   EE   +  LE  K+ + +    EL      L+  + + D    L
Sbjct: 208 IEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEAL 263


>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF)
           domain from elongation factor-1 beta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 90

 Score = 25.4 bits (56), Expect = 2.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 95  EELEEKIRRLEEDRNSVDINA 115
           ++L++ I   E+   S DI A
Sbjct: 66  DDLQQSIEEDEDHVQSTDIAA 86


>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 25.1 bits (55), Expect = 2.8
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 63  KLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVDINA 115
           +L   +NQ +    +TR+ +E     L    K  +E  +  LE      D  A
Sbjct: 25  ELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAA 77


>d1vr8a1 d.312.1.1 (A:25-154) Hypothetical protein TM1622
           {Thermotoga maritima [TaxId: 2336]}
          Length = 130

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 151 VTVSGPYIVYMLRDEEIIEDWTIIKK 176
            T  GP  +Y+ + EE  + W  +  
Sbjct: 43  ETEYGPVFLYVYKGEEAKKIWKKLNG 68


>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF)
           domain from elongation factor-1 beta {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 91

 Score = 24.6 bits (54), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 95  EELEEKIRRLEEDRNSVDINA 115
           + LEE+I   E+   S+D+ A
Sbjct: 67  DMLEEQITAFEDYVQSMDVAA 87


>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
          Pyrococcus furiosus [TaxId: 2261]}
          Length = 293

 Score = 25.9 bits (56), Expect = 3.5
 Identities = 2/20 (10%), Positives = 11/20 (55%)

Query: 43 QKLQDNMRIRTEVAAILRQY 62
          +++   + I+T++   +  +
Sbjct: 8  REISPTLDIQTKILEYMTDF 27


>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
          {Thermus thermophilus, AspRS-2 [TaxId: 274]}
          Length = 304

 Score = 24.7 bits (53), Expect = 7.0
 Identities = 3/20 (15%), Positives = 11/20 (55%)

Query: 43 QKLQDNMRIRTEVAAILRQY 62
          +K +  ++++  +    R+Y
Sbjct: 9  EKARAPLKVQAALVRGFRRY 28


>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 88

 Score = 23.6 bits (51), Expect = 7.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 50 RIRTEVAAILRQYKLNNVQN 69
           +R  VA  L++  L+ +Q 
Sbjct: 14 NLRNRVAEFLKKKGLDRIQY 33


>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
           {Escherichia coli, gene lpxA [TaxId: 562]}
          Length = 262

 Score = 24.4 bits (52), Expect = 8.5
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 60  RQYKLNNVQNQYNAEEQATRQNLENEKSLLYDHMKEELEEKIRRLEEDRNSVD-INADLW 118
             + +N    +     +     + N   L+Y    + L+E    + E   +   + A   
Sbjct: 193 TPFGVNIEGLKRRGFSREAITAIRNAYKLIY-RSGKTLDEVKPEIAELAETYPEVKAFTD 251

Query: 119 FFEHNKRG 126
           FF  + RG
Sbjct: 252 FFARSTRG 259


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,503
Number of extensions: 30620
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 32
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)