BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15421
(340 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 598 bits (1543), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/340 (85%), Positives = 315/340 (92%)
Query: 1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
M+ELD LRQEAE LKN IRDARKA D +L T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
MHWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ +F
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
FATGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 597 bits (1540), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/340 (85%), Positives = 315/340 (92%)
Query: 1 MNELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYA 60
M+ELD LRQEAE LKN IRDARKA D +L T N++P+GRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 61 MHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNI 120
MHWG+DSR L+SASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNI
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 121 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF 180
CSIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ +F
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWA 240
GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG A
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSM 300
FATGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
K +RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 597 bits (1539), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/339 (85%), Positives = 314/339 (92%)
Query: 2 NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
+ELD LRQEAE LKN IRDARKA D +L T N++P+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 13 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 72
Query: 62 HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
HWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 73 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 132
Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
SIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ +F
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AF
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
ATGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 313 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 597 bits (1538), Expect = e-171, Method: Compositional matrix adjust.
Identities = 289/339 (85%), Positives = 314/339 (92%)
Query: 2 NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
+ELD LRQEAE LKN IRDARKA D +L T N++P+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 61
Query: 62 HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
HWG+DSR LVSASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
SIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ +F
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AF
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
ATGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 595 bits (1534), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/339 (84%), Positives = 314/339 (92%)
Query: 2 NELDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAM 61
+ELD LRQEAE LKN IRDARKA D +L T N++P+GRIQMRTRRTLRGHLAKIYAM
Sbjct: 2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAM 61
Query: 62 HWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNIC 121
HWG+DSR L+SASQDGKLI+WDSYTTNKVHAIPLRSSWVMTCAYAPSG++VACGGLDNIC
Sbjct: 62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 122 SIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFI 181
SIY+LKTREGNVRVSREL GHTGYLSCCRFLDDNQIVTSSGD +CALWDIETGQQ +F
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAF 241
GHTGDVMSLSLAPD R FVSGACDASAKLWD+R+G C+QTF GHESDINA+ FFPNG AF
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 242 ATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMK 301
ATGSDDATCRLFD+RADQEL YSHDNIICGITSV+FS+SGRLLLAGYDDFNCNVWD++K
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 302 TERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+RAG+LAGHDNRVSCLGVT+DGMAVATGSWDSFL+IWN
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 234/341 (68%), Gaps = 5/341 (1%)
Query: 4 LDSLRQEAETLKNAIRDARKAACDTSLVTATGNMEPIGRIQMRTRRTLRGHLAKIYAMHW 63
L SL+ EAE+LK + + R D L +E +G+ M+TRRTL+GH K+ M W
Sbjct: 13 LASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW 72
Query: 64 GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSI 123
D R +VS+SQDGK+IVWDS+TTNK HA+ + +WVM CAYAPSG +ACGGLDN CS+
Sbjct: 73 CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132
Query: 124 YSLK--TREGNVRVSRELPGHTGYLSCCRFLD-DNQIVTSSGDMSCALWDIETGQQCASF 180
Y L E + + HT YLS C F + D QI+T+SGD +CALWD+E+GQ SF
Sbjct: 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF 192
Query: 181 IGHTGDVMSLSLAPDM--RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
GH DV+ L LAP TFVSG CD A +WD+R G C Q F HESD+N+V ++P+G
Sbjct: 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG 252
Query: 239 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWD 298
AFA+GSDDATCRL+D+RAD+E+A+YS ++II G +SV FS SGRLL AGY+D+ NVWD
Sbjct: 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD 312
Query: 299 SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
+K R IL GH+NRVS L V+ DG A +GSWD LR+W
Sbjct: 313 VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 133 VRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLS 191
++ R L GH + C + D + IV+SS D +WD T + + VM+ +
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 192 LAPDMRTFVSGACDASAKLWDI------RDGSCKQTFPGHESDINAVTFFPNGWAFATGS 245
AP G D ++ + + K++ H + ++A +F + T S
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 246 DDATCRLFDIRADQEL-AMYSHD-NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE 303
D TC L+D+ + Q L + + H +++C +A S +G ++G D VWD +
Sbjct: 174 GDGTCALWDVESGQLLQSFHGHGADVLC--LDLAPSETGNTFVSGGCDKKAMVWDMRSGQ 231
Query: 304 RAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
H++ V+ + G A A+GS D+ R+++
Sbjct: 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 213/312 (68%), Gaps = 21/312 (6%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
RTL+GH K+Y++ W + +VSASQDG+LIVW++ T+ K HAI L WVM CA+AP+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 109 GSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFLDDNQ--IVTSSGD 163
G VACGGLD+ CSI++L + R+GN+ VSR L GH GY S C+++ D + ++T SGD
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 164 MSCALWDIETGQQCASF-----IGHTGDVMSLSL-APDMRTFVSGACDASAKLWDIRDGS 217
+C LWD+ TGQ+ + F GHT DV+SLS+ + + F+SG+CD + +LWD+R S
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239
Query: 218 -CKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-----HDNIIC 271
+T+ GHE DIN+V FFP+G F TGSDD TCRLFD+R +L +Y+ +DN +
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERA---GILAG-HDNRVSCLGVTEDGMAV 327
+TSVAFS SGRLL AGY + +C VWD++ E G L H+ R+SCLG++ DG A+
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 328 ATGSWDSFLRIW 339
TGSWD L+IW
Sbjct: 360 CTGSWDKNLKIW 371
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 137 RELPGHTGYLSCCRFL-DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD 195
R L GH+G + + + N IV++S D +W+ T Q+ + H VM + AP+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 196 MRTFVSGACDASAKLWDI-----RDGS--CKQTFPGHESDINAVTFFPNGWA-FATGSDD 247
++ G D++ ++++ RDG+ + GH+ ++ + P+ TGS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 248 ATCRLFDIRADQELAMYSHDNIICGITSVAFSRS-----GRLLLAGYDDFNCNVWDSMKT 302
TC L+D+ Q ++++ + G T+ S S + ++G D +WD T
Sbjct: 180 QTCVLWDVTTGQRISIFGSE-FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 303 ERA-GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
RA GH+ ++ + DG TGS D R+++
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 143/293 (48%), Gaps = 13/293 (4%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
+TL GH + + + + D + + SAS D + +W+ + + SS V A++P
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 150
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCA 167
G +A D +++ R G ++ + L GH+ + F D Q I ++S D +
Sbjct: 151 GQTIASASDDKTVKLWN---RNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 205
Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES 227
LW+ GQ + GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S
Sbjct: 206 LWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 263
Query: 228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA 287
+N V F P+G A+ SDD T +L++ + H + + G VAFS G+ + +
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG---VAFSPDGQTIAS 320
Query: 288 GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
DD +W+ + L GH + V + + DG +A+ S D +++WN
Sbjct: 321 ASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 13/293 (4%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
+TL GH + ++ + + D + + SAS D + +W+ + + SS V A++P
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPD 355
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGDMSCA 167
G +A D +++ R G ++ + L GH+ + F D Q I ++S D +
Sbjct: 356 GQTIASASDDKTVKLWN---RNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410
Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES 227
LW+ GQ + GH+ V ++ +PD +T S + D + KLW+ R+G QT GH S
Sbjct: 411 LWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 468
Query: 228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLA 287
+ V F P+G A+ SDD T +L++ + H + + G VAFS G+ + +
Sbjct: 469 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQTIAS 525
Query: 288 GYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
DD +W+ + L GH + V + + DG +A+ S D +++WN
Sbjct: 526 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 13/297 (4%)
Query: 45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCA 104
++ R L H + + + + D + + SAS D + +W+ + + SS V A
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTSSGD 163
++P G +A D +++ R G ++ + L GH+ + F D Q I ++S D
Sbjct: 65 FSPDGQTIASASDDKTVKLWN---RNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
+ LW+ GQ + GH+ V ++ +PD +T S + D + KLW+ R+G QT
Sbjct: 120 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 177
Query: 224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGR 283
GH S + V F P+G A+ SDD T +L++ + H + + G VAFS G+
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDGQ 234
Query: 284 LLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ + DD +W+ + L GH + V+ + DG +A+ S D +++WN
Sbjct: 235 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 195
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 255
Query: 335 FLRIWN 340
+ IWN
Sbjct: 256 LVYIWN 261
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 47 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 162
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 163 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 278
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 187
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 129
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 66
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 336 LRIWN 340
+RIW+
Sbjct: 127 VRIWD 131
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
+T P H ++AV F +G + S D CR++D + Q L D+ ++ V F
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 203
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
S +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 336 LRIWN 340
+ IWN
Sbjct: 264 VYIWN 268
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L ++S D + +W +Y I + A++
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ + + D K+W DG ++T GH+ I+ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A S D ++ +D + ++ ++ + GI+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK-----LGISD 73
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 336 LRIWN 340
+RIW+
Sbjct: 134 VRIWD 138
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 221
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 281
Query: 335 FLRIWN 340
+ IWN
Sbjct: 282 LVYIWN 287
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 155
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 92
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 336 LRIWN 340
+RIW+
Sbjct: 153 VRIWD 157
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 199
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 335 FLRIWN 340
+ IWN
Sbjct: 260 LVYIWN 265
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 133
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 70
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 336 LRIWN 340
+RIW+
Sbjct: 131 VRIWD 135
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 223
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 283
Query: 335 FLRIWN 340
+ IWN
Sbjct: 284 LVYIWN 289
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 75 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 190
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 191 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 306
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 215
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 275
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 157
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 94
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 336 LRIWN 340
+RIW+
Sbjct: 155 VRIWD 159
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 199
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259
Query: 335 FLRIWN 340
+ IWN
Sbjct: 260 LVYIWN 265
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 133
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 70
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 336 LRIWN 340
+RIW+
Sbjct: 131 VRIWD 135
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 198
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 258
Query: 335 FLRIWN 340
+ IWN
Sbjct: 259 LVYIWN 264
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 50 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 165
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 166 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 281
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 13/310 (4%)
Query: 39 PIGRIQMRT----RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP 94
P+G ++ + TL GH + ++ + + L S+S D + +W +Y I
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LD 153
+ A++ + + D I+ + + + + L GH+ Y+ CC F
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQ 117
Query: 154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI 213
N IV+ S D S +WD++TG+ + H+ V ++ D VS + D ++WD
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 214 RDGSCKQTFPGHES-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIIC 271
G C +T ++ ++ V F PNG + D T +L+D + L Y+ H N
Sbjct: 178 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVAT 329
I + G+ +++G +D +W+ E L GH + V + TE+ +A A
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 297
Query: 330 GSWDSFLRIW 339
D +++W
Sbjct: 298 LENDKTIKLW 307
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 132
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 69
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 336 LRIWN 340
+RIW+
Sbjct: 130 VRIWD 134
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
+T P H ++AV F +G + S D CR++D + Q L D+ ++ V F
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 217
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
S +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 277
Query: 336 LRIWN 340
+ IWN
Sbjct: 278 VYIWN 282
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 68 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 183
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 184 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 299
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 208
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 150
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 87
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 336 LRIWN 340
+RIW+
Sbjct: 148 VRIWD 152
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
+T P H ++AV F +G + S D CR++D + Q L D+ ++ V F
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 201
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
S +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 261
Query: 336 LRIWN 340
+ IWN
Sbjct: 262 VYIWN 266
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 52 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 167
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 168 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 283
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 192
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 134
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 71
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 336 LRIWN 340
+RIW+
Sbjct: 132 VRIWD 136
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 9/245 (3%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAF 278
+T P H ++AV F +G + S D CR++D + Q L D+ ++ V F
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 206
Query: 279 SRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDSF 335
S +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Query: 336 LRIWN 340
+ IWN
Sbjct: 267 VYIWN 271
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 139
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 76
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 336 LRIWN 340
+RIW+
Sbjct: 137 VRIWD 141
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 204
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 264
Query: 335 FLRIWN 340
+ IWN
Sbjct: 265 LVYIWN 270
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 56 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 171
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 172 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 287
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 196
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 256
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 138
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 75
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 336 LRIWN 340
+RIW+
Sbjct: 136 VRIWD 140
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 205
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 FLRIWN 340
+ IWN
Sbjct: 266 LVYIWN 271
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 139
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 76
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 336 LRIWN 340
+RIW+
Sbjct: 137 VRIWD 141
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 205
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 265
Query: 335 FLRIWN 340
+ IWN
Sbjct: 266 LVYIWN 271
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 139
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 76
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 336 LRIWN 340
+RIW+
Sbjct: 137 VRIWD 141
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
+ IWN
Sbjct: 263 LVYIWN 268
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 9/297 (3%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+++G +D +W+ E L GH + V + TE+ +A A D ++++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 73
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 336 LRIWN 340
+RIW+
Sbjct: 134 VRIWD 138
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
+ IWN
Sbjct: 263 LVYIWN 268
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 10/236 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + + LP H+ +S F D + IV+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
+T+ GH+++ I A G +GS+D +++++ + + + H +++
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 118/271 (43%), Gaps = 7/271 (2%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSC 166
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD++TG+ + H+ V ++ D VS + D ++WD G C +T +
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 227 S-DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRL 284
+ ++ V F PNG + D T +L+D + L Y+ H N I + G+
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRV 315
+++G +D +W+ E L GH + V
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + L H + VS + DG + + S+D RIW+
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRL---FDIRADQELAMYSHDNIICGITS 275
K T GH +++V F PNG A+ S D ++ +D + ++ ++ + GI+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISD 73
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
VA+S LL++ DD +WD + L GH N V C + +GS+D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 336 LRIWN 340
+RIW+
Sbjct: 134 VRIWD 138
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 11/170 (6%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAP 107
+TL H + A+H+ D +VS+S DG +WD+ + + I + V ++P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC----RFLDDNQIVTSSGD 163
+G ++ LDN ++ + + GH C IV+ S D
Sbjct: 206 NGKYILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC--DASAKLW 211
+W+++T + GHT V+S + P S A D + KL+
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 49 RTLRGHLAK---IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAY 105
+T GH + I+A + + +VS S+D + +W+ T V + + V++ A
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 106 APSGSFVACGGLDNICSIYSLKT 128
P+ + +A L+N +I K+
Sbjct: 291 HPTENIIASAALENDKTIKLFKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 118/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D + +WD K + GH N C+ G + +GS D+
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
+ IWN
Sbjct: 263 MVYIWN 268
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 9/224 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + LP H+ +S F D + IV+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----MCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D KLWD G C
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQ 259
+T+ GH+++ I A G +GS+D +++++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 9/295 (3%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSCAL 168
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S +
Sbjct: 81 NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 169 WDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES- 227
WD++TG + H+ V ++ D VS + D ++WD G C +T ++
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLL 286
++ V F PNG + D +L+D + L Y+ H N I + G+ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 287 AGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD L H + VS + DG + + S+D RIW+
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 11/170 (6%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAP 107
+TL H + A+H+ D +VS+S DG +WD+ + + I + V ++P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC----RFLDDNQIVTSSGD 163
+G ++ LDN ++ + + GH C IV+ S D
Sbjct: 206 NGKYILAATLDNDLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC--DASAKLW 211
+W+++T + GHT V+S + P S A D + KLW
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 11/246 (4%)
Query: 100 VMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIV 158
V + ++P+G ++A D + I+ +G + + + GH G D N +V
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSC 218
++S D + +WD+ +G+ + GH+ V + P VSG+ D S ++WD++ G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMC 144
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNIICGITSVA 277
+T P H ++AV F +G + S D CR++D + Q L + DN ++ V
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--PVSFVK 202
Query: 278 FSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGV---TEDGMAVATGSWDS 334
FS +G+ +LA D +WD K + GH N C+ G + +GS D+
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 262
Query: 335 FLRIWN 340
+ IWN
Sbjct: 263 MVYIWN 268
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 9/224 (4%)
Query: 41 GRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV 100
G + +T+ GH I + W SDS LVSAS D L +WD + + + S++V
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVT 159
C + P + + G D I+ +KT + LP H+ +S F D + IV+
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG----MCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMS-LSLAPDMRTFVSGACDASAKLWDIRDGSC 218
SS D C +WD +GQ + I +S + +P+ + ++ D + KLWD G C
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 219 KQTFPGHESD---INAVTFFPNGWAFATGSDDATCRLFDIRADQ 259
+T+ GH+++ I A G +GS+D +++++ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 128/295 (43%), Gaps = 9/295 (3%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
TL GH + ++ + + L S+S D + +W +Y I + A++
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSCAL 168
+ + D I+ + + + + L GH+ Y+ CC F N IV+ S D S +
Sbjct: 81 NLLVSASDDKTLKIWDVSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 169 WDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHES- 227
WD++TG + H+ V ++ D VS + D ++WD G C +T ++
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 228 DINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVAFSRSGRLLL 286
++ V F PNG + D T +L+D + L Y+ H N I + G+ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 287 AGYDDFNCNVWDSMKTERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIW 339
+G +D +W+ E L GH + V + TE+ +A A D +++W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 6/164 (3%)
Query: 179 SFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNG 238
+ GHT V S+ +P+ S + D K+W DG ++T GH+ I+ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 239 WAFATGSDDATCRLFDIRADQEL-AMYSHDN-IICGITSVAFSRSGRLLLAGYDDFNCNV 296
+ SDD T +++D+ + + L + H N + C F+ L+++G D + +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC----CNFNPQSNLIVSGSFDESVRI 136
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD L H + VS + DG + + S+D RIW+
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 11/170 (6%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHA-IPLRSSWVMTCAYAP 107
+TL H + A+H+ D +VS+S DG +WD+ + + I + V ++P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC----RFLDDNQIVTSSGD 163
+G ++ LDN ++ + + GH C IV+ S D
Sbjct: 206 NGKYILAATLDNTLKLWDYSKG----KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGAC--DASAKLW 211
+W+++T + GHT V+S + P S A D + KLW
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 12/213 (5%)
Query: 129 REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM 188
R G ++ + L GH ++ C N+IV+ S D + +W TG+ + +GHTG V
Sbjct: 104 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 163
Query: 189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 248
S + ++ +SG+ D + K+W+ G C T GH S + + +GS DA
Sbjct: 164 SSQMRDNI--IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDA 219
Query: 249 TCRLFDIRADQEL-AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGI 307
T R++DI Q L + H + + V + GR +++G DF VWD
Sbjct: 220 TLRVWDIETGQCLHVLMGH---VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 274
Query: 308 LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
L GH NRV L DG+ V +GS D+ +R+W+
Sbjct: 275 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 16/213 (7%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
TL GH + + MH + +VS S+D L VWD T +H + + V Y G
Sbjct: 194 TLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249
Query: 110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW 169
V G D + ++ +T L GHT + +F D +V+ S D S +W
Sbjct: 250 RRVVSGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVW 304
Query: 170 DIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG---HE 226
D+ETG + GH + L ++ VSG D++ K+WDI+ G C QT G H+
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 362
Query: 227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQ 259
S + + F N T SDD T +L+D++ +
Sbjct: 363 SAVTCLQFNKN--FVITSSDDGTVKLWDLKTGE 393
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 20/253 (7%)
Query: 49 RTLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA 106
RTL GH + W S R+ ++S S D L VW++ T +H + +S + C +
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTS-TVRCMHL 207
Query: 107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSC 166
V+ G D ++ ++T + L GH + C ++ D ++V+ + D
Sbjct: 208 HEKRVVS-GSRDATLRVWDIETGQ----CLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMV 261
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+WD ET + GHT V SL D VSG+ D S ++WD+ G+C T GH+
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Query: 227 SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI-ICGITSVAFSRSGRLL 285
S + + N +G+ D+T +++DI+ Q L N +T + F+++ +
Sbjct: 320 SLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FV 375
Query: 286 LAGYDDFNCNVWD 298
+ DD +WD
Sbjct: 376 ITSSDDGTVKLWD 388
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 13/257 (5%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
R L GH A + + ++ VSAS D L +W+ + + V++ A++P
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF---LDDNQIVTSSGDMS 165
+ GG DN ++++K G + HT ++SC RF LD IV+ D
Sbjct: 121 NRQIVSGGRDNALRVWNVK---GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 166 CALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGH 225
+WD+ TG+ GHT V S++++PD S D A+LWD+ G
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA- 236
Query: 226 ESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ---ELAMYSH--DNIICGITSVAFSR 280
+ IN + F PN + ++ R+FD+ ELA I+ S+A+S
Sbjct: 237 GAPINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 281 SGRLLLAGYDDFNCNVW 297
G L +GY D VW
Sbjct: 296 DGSTLYSGYTDNVIRVW 312
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 137 RELPGHTGYLSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD 195
R L GH+ ++S ++ N V++S D S LW+++ GQ F+GHT DV+S++ +PD
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 196 MRTFVSGACDASAKLWDIRDGSCKQTFP--GHESDINAVTFFP--NGWAFATGSDDATCR 251
R VSG D + ++W+++ G C T H ++ V F P + +G D +
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 252 LFDIRADQELA-MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTE 303
++D+ + + + H N +TSV S G L + D +WD K E
Sbjct: 180 VWDLATGRLVTDLKGHTNY---VTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 20/220 (9%)
Query: 138 ELPGHTGY---LSCCRFLDD-NQIVTSSGDMSCALWDIETGQQCAS---------FIGHT 184
+L GH G+ L+C + + ++V++S D + W + + GH+
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 185 GDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATG 244
V ++L+ + VS + D S +LW++++G C+ F GH D+ +V F P+ +G
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 245 SDDATCRLFDIRAD--QELAMYSHDNIICGITSVAFSRS--GRLLLAGYDDFNCNVWDSM 300
D R+++++ + L+ +H + + + V FS S ++++G D VWD
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWV---SCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 301 KTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
L GH N V+ + V+ DG A+ D R+W+
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYS 125
D+ +VS D + VWD T V + +++V + +P GS A D + ++
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 126 LKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIG-HT 184
L E ++ P + S R+ + ++ + ++D+E H
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPNRYW-----MCAATEKGIRIFDLENKDIIVELAPEHQ 279
Query: 185 G------DVMSLSLAPDMRTFVSGACDASAKLWDIRDGS 217
G + +S++ + D T SG D ++W + + +
Sbjct: 280 GSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 40/243 (16%)
Query: 129 REGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGD-- 186
RE +V + + L HT + C +F +D + + + + + ++ + G A +
Sbjct: 51 REIDVELHKSL-DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK 109
Query: 187 ----------------VMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
+ S+ +PD + +GA D ++WDI + GHE DI
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 231 AVTFFPNGWAFATGSDDATCRLFDIRADQ-ELAMYSHDNIICGITSVAFSR-SGRLLLAG 288
++ +FP+G +GS D T R++D+R Q L + D G+T+VA S G+ + AG
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAG 225
Query: 289 YDDFNCNVWDSMKTERAGILA-----------GHDNRVSCLGVTEDGMAVATGSWDSFLR 337
D VWDS G L GH + V + T DG +V +GS D ++
Sbjct: 226 SLDRAVRVWDS----ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 338 IWN 340
+WN
Sbjct: 282 LWN 284
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 128/271 (47%), Gaps = 30/271 (11%)
Query: 94 PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYL-SCCRFL 152
P ++ + ++P G F+A G D + I+ ++ R ++ L GH + S F
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFP 175
Query: 153 DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP-DMRTFVSGACDASAKLW 211
+++V+ SGD + +WD+ TG QC+ + V +++++P D + +G+ D + ++W
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 212 DIRDG-------SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQELAM 263
D G S ++ GH+ + +V F +G + +GS D + +L++++ A+ +
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 264 YSHDNIICGIT---------SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR 314
+ ++ C +T SVA +++ +L+G D WD +L GH N
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 315 VSCLGVTE------DGMAVATGSWDSFLRIW 339
V + V + ATGS D RIW
Sbjct: 355 VISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 28/251 (11%)
Query: 33 ATGNMEPIGRI-QMRTRRT---LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN 88
ATG + + RI + R+ L+GH IY++ + LVS S D + +WD T
Sbjct: 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 89 KVHAIPLRSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELP---GHTG 144
+ + V T A +P G ++A G LD ++ +T R+ E GH
Sbjct: 199 CSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 145 YLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCA------------SFIGHTGDVMSLS 191
+ F D Q +V+ S D S LW+++ + ++IGH V+S++
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Query: 192 LAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI------NAVTFFPNGWAFATGS 245
+ +SG+ D WD + G+ GH + + N + P FATGS
Sbjct: 318 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377
Query: 246 DDATCRLFDIR 256
D R++ +
Sbjct: 378 GDCKARIWKYK 388
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 109/267 (40%), Gaps = 26/267 (9%)
Query: 58 IYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGL 117
I ++ + D + L + ++D + +WD V + + + Y PSG + G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETG--- 174
D I+ L+T + ++ +S E T +S D I S D + +WD ETG
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG---DGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 175 ----QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD------------GSC 218
+ S GH V S+ D ++ VSG+ D S KLW++++ G+C
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 219 KQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS-HDNIICGITSVA 277
+ T+ GH+ + +V N +GS D +D ++ L M H N + +
Sbjct: 303 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362
Query: 278 FSRSG---RLLLAGYDDFNCNVWDSMK 301
S G + G D +W K
Sbjct: 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 13/259 (5%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+R LRGH + + SD + +S S DG L +WD T + V++ A++
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSG-DM 164
+ G D +++ G + + + H+ ++SC RF + N I+ S G D
Sbjct: 116 DNRQIVSGSRDKTIKLWNTL---GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
+W++ + + IGHTG + +++++PD SG D A LWD+ +G T G
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 225 HESDINAVTFFPNGWAF--ATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAF 278
+ INA+ F PN + ATG D ++ QE+ S TS+A+
Sbjct: 233 GDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 291
Query: 279 SRSGRLLLAGYDDFNCNVW 297
S G+ L AGY D VW
Sbjct: 292 SADGQTLFAGYTDNLVRVW 310
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 99 WVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLSCCRFLDDNQ 156
WV A P + D ++ L E N + R L GH+ ++S D Q
Sbjct: 17 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 76
Query: 157 IVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD 215
S S D + LWD+ TG F+GHT DV+S++ + D R VSG+ D + KLW+
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL- 135
Query: 216 GSCKQTF--PGHESDINAVTFFPN---------GWAFATGSDDATCRLFDIRADQELAMY 264
G CK T H ++ V F PN GW D +++++ A+ +L
Sbjct: 136 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-------DKLVKVWNL-ANCKLKT- 186
Query: 265 SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHD-NRVSCLGVTED 323
+H + +V S G L +G D +WD + + L G D C
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY 246
Query: 324 GMAVATGSWDSFLRIWN 340
+ ATG ++IW+
Sbjct: 247 WLCAATG---PSIKIWD 260
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 118/259 (45%), Gaps = 13/259 (5%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+R LRGH + + SD + +S S DG L +WD T + V++ A++
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD--NQIVTSSG-DM 164
+ G D +++ G + + + H+ ++SC RF + N I+ S G D
Sbjct: 139 DNRQIVSGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
+W++ + + IGHTG + +++++PD SG D A LWD+ +G T G
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 225 HESDINAVTFFPNGWAF--ATGSD----DATCRLFDIRADQELAMYSHDNIICGITSVAF 278
+ INA+ F PN + ATG D ++ QE+ S TS+A+
Sbjct: 256 GDI-INALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314
Query: 279 SRSGRLLLAGYDDFNCNVW 297
S G+ L AGY D VW
Sbjct: 315 SADGQTLFAGYTDNLVRVW 333
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 111/300 (37%), Gaps = 63/300 (21%)
Query: 99 WVMTCAYAPS-GSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHTGYLSCCRFLDDNQ 156
WV A P + D ++ L E N + R L GH+ ++S D Q
Sbjct: 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99
Query: 157 IVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRD 215
S S D + LWD+ TG F+GHT DV+S++ + D R VSG+ D + KLW+
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL- 158
Query: 216 GSCKQTFP----------------------------------------------GHESDI 229
G CK T GH +
Sbjct: 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 218
Query: 230 NAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY 289
N VT P+G A+G D L+D+ + L +I I ++ FS + R L
Sbjct: 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI---INALCFSPN-RYWLCAA 274
Query: 290 DDFNCNVW--------DSMKTERAGILA-GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ +W D +K E + + + L + DG + G D+ +R+W
Sbjct: 275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 128/315 (40%), Gaps = 29/315 (9%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ L GH + + + + +VSAS+D + VWD T + + + V ++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSSGDMSC 166
SG +A D ++ + E R + GH +S + + + IV++S D +
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
+W+++TG +F GH V + D S + D + ++W + CK H
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 227 SDINAVTFFPN--------------------GWAFATGSDDATCRLFDIRADQEL-AMYS 265
+ +++ P G +GS D T +++D+ L +
Sbjct: 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336
Query: 266 HDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGM 325
HDN + G V F G+ +L+ DD VWD L H++ V+ L +
Sbjct: 337 HDNWVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 326 AVATGSWDSFLRIWN 340
V TGS D +++W
Sbjct: 394 YVVTGSVDQTVKVWE 408
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 25/229 (10%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
RT+ GH + ++ + ++VSAS+D + +W+ T V WV
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ------------ 156
G+ +A D ++ + T+E EL H + C + ++
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKA----ELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 157 ---------IVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS 207
+++ S D + +WD+ TG + +GH V + + +S A D +
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 208 AKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIR 256
++WD ++ C +T HE + ++ F TGS D T ++++ R
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 5/197 (2%)
Query: 59 YAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLD 118
+ + + DS+ L + + GK+ ++ + K +++ R ++++ AY+P G ++A G +D
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Query: 119 NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWDIETGQQC 177
I +I+ + T ++ L GH + F D+Q+ VT+S D ++D++
Sbjct: 186 GIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241
Query: 178 ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPN 237
+ GH V++++ PD FVS + D S K+WD+ +C TF H+ + V + N
Sbjct: 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN 301
Query: 238 GWAFATGSDDATCRLFD 254
G + DD ++D
Sbjct: 302 GSKIVSVGDDQEIHIYD 318
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Query: 112 VACGGLDNICSIYSLKTREGNVRVSRELPGHT-GYLSCCRFLDDNQIVTSSGDMSCALWD 170
V G LD++ ++ K R+ + + L GH G +S +SS D LWD
Sbjct: 51 VVTGSLDDLVKVW--KWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
+E G+Q S D +L+ +PD + +G ++ + G + + I
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 231 AVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYD 290
++ + P+G A+G+ D +FDI + L ++ + I S+ FS +LL+ D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLL--HTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 291 DFNCNVWDSMKTERAGILAGH 311
D ++D AG L+GH
Sbjct: 227 DGYIKIYDVQHANLAGTLSGH 247
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAY 105
+ TL GH I ++ + DS+ LV+AS DG + ++D N + +SWV+ A+
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
Query: 106 AP 107
P
Sbjct: 257 CP 258
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 32 TATGNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT----- 86
T G + G + +L I ++ + D + L S + DG + ++D T
Sbjct: 141 THVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH 200
Query: 87 TNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYL 146
T + HA+P+RS ++P + D IY ++ + ++ L GH ++
Sbjct: 201 TLEGHAMPIRS-----LTFSPDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHASWV 251
Query: 147 SCCRF-LDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD 205
F DD V+SS D S +WD+ T +F H V + + VS D
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Query: 206 ASAKLWD 212
++D
Sbjct: 312 QEIHIYD 318
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 34/316 (10%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
R TL GH + ++ + NL+ SAS+D LI W ++ +P+RS V
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
C G++ D ++ + T E R GH + +S + I++
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
S D + +W I+ GQ A+ +GH V + + P+ + T +S D K W++
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
+ F GH S+IN +T P+G A+ D L+++ A + AMY+ D +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
S+AFS + L A G F+ + + D ++ E AG A + L + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
+ G D+ +R+W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
R+ +GH + +D +SAS D L +WD T S VM+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL------DDNQIVTSSG 162
S + G D ++++K + L GH ++S R + DD+ + S+G
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 163 -DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 221
D W++ Q A FIGH ++ +L+ +PD S D LW++ T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 222 FPGHESDINAVTFFPNGW----AFATG----SDDATCRLFDIRADQELAMYSHDNIICGI 273
+ ++ ++ F PN + A ATG S D + D+R E A YS +
Sbjct: 234 LSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSAAAEPHAV 290
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSM 300
S+A+S G+ L AGY D VW M
Sbjct: 291 -SLAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
R TL GH + ++ + NL+ SAS+D LI W ++ +P+RS V
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
C G++ D ++ + T E R GH + +S + I++
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
S D + +W I+ GQ A+ +GH V + + P+ + T +S D K W++
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
+ F GH S+IN +T P+G A+ D L+++ A + AMY+ D +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
S+AFS + L A G F+ + + D ++ E AG + L + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
+ G D+ +R+W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
R+ +GH + +D +SAS D L +WD T S VM+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL------DDNQIVTSSG 162
S + G D ++++K + L GH ++S R + DD+ + S+G
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 163 -DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 221
D W++ Q A FIGH ++ +L+ +PD S D LW++ T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 222 FPGHESDINAVTFFPNGW----AFATG----SDDATCRLFDIRADQELAMYSHDNIICGI 273
+ ++ ++ F PN + A ATG S D + D+R E A YS +
Sbjct: 234 LSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAV 290
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSM 300
S+A+S G+ L AGY D VW M
Sbjct: 291 -SLAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
R TL GH + ++ + NL+ SAS+D LI W ++ +P+RS V
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
C G++ D ++ + T E R GH + +S + I++
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
S D + +W I+ GQ A+ +GH V + + P+ + T +S D K W++
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
+ F GH S+IN +T P+G A+ D L+++ A + AMY+ D +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
S+AFS + L A G F+ + + D ++ E AG + L + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
+ G D+ +R+W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
R+ +GH + +D +SAS D L +WD T S VM+
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 118
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL------DDNQIVTSSG 162
S + G D ++++K + L GH ++S R + DD+ + S+G
Sbjct: 119 ASMIISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 163 -DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 221
D W++ Q A FIGH ++ +L+ +PD S D LW++ T
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 233
Query: 222 FPGHESDINAVTFFPNGW----AFATG----SDDATCRLFDIRADQELAMYSHDNIICGI 273
+ ++ ++ F PN + A ATG S D + D+R E A YS +
Sbjct: 234 LSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAV 290
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSM 300
S+A+S G+ L AGY D VW M
Sbjct: 291 -SLAWSADGQTLFAGYTDNVIRVWQVM 316
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
R TL GH + ++ + NL+ SAS+D LI W ++ +P+RS V
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
C G++ D ++ + T E R GH + +S + I++
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 125
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
S D + +W I+ GQ A+ +GH V + + P+ + T +S D K W++
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
+ F GH S+IN +T P+G A+ D L+++ A + AMY+ D +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
S+AFS + L A G F+ + + D ++ E AG + L + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
+ G D+ +R+W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 136/316 (43%), Gaps = 34/316 (10%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
R TL GH + ++ + NL+ SAS+D LI W ++ +P+RS V
Sbjct: 4 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 63
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTS 160
C G++ D ++ + T E R GH + +S + I++
Sbjct: 64 DCTLTADGAYALSASWDKTLRLWDVATGETYQR----FVGHKSDVMSVDIDKKASMIISG 119
Query: 161 SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLWDIR 214
S D + +W I+ GQ A+ +GH V + + P+ + T +S D K W++
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 215 DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYS---HDNIIC 271
+ F GH S+IN +T P+G A+ D L+++ A + AMY+ D +
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQDEVF- 235
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
S+AFS + L A G F+ + + D ++ E AG + L + DG
Sbjct: 236 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 292
Query: 325 MAVATGSWDSFLRIWN 340
+ G D+ +R+W
Sbjct: 293 QTLFAGYTDNVIRVWQ 308
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
R+ +GH + +D +SAS D L +WD T S VM+
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK 112
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL------DDNQIVTSSG 162
S + G D ++++K + L GH ++S R + DD+ + S+G
Sbjct: 113 ASMIISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 167
Query: 163 -DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 221
D W++ Q A FIGH ++ +L+ +PD S D LW++ T
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT 227
Query: 222 FPGHESDINAVTFFPNGW----AFATG----SDDATCRLFDIRADQELAMYSHDNIICGI 273
+ ++ ++ F PN + A ATG S D + D+R E A YS +
Sbjct: 228 LSAQD-EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP--EFAGYSKAAEPHAV 284
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSM 300
S+A+S G+ L AGY D VW M
Sbjct: 285 -SLAWSADGQTLFAGYTDNVIRVWQVM 310
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 34/316 (10%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLV-SASQDGKLIVWDSYTTNKVHAIPLRS-----SWVM 101
R TL GH + ++ + NL+ SAS+D LI W ++ +P+RS V
Sbjct: 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ 69
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ----I 157
C G++ D ++ + T E R G+ S +D ++ I
Sbjct: 70 DCTLTADGAYALSASWDKTLRLWDVATGETYQRF-------VGHKSDVXSVDIDKKASXI 122
Query: 158 VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR------TFVSGACDASAKLW 211
++ S D + +W I+ GQ A+ +GH V + + P+ + T +S D K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 212 DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIIC 271
++ + F GH S+IN +T P+G A+ D L+++ A + S + +
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 272 GITSVAFSRSGRLLLA----GYDDFNCN---VWDSMKTERAGILAGHDNRVSCLGVTEDG 324
S+AFS + L A G F+ + + D ++ E AG + L + DG
Sbjct: 242 ---SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 325 MAVATGSWDSFLRIWN 340
+ G D+ +R+W
Sbjct: 299 QTLFAGYTDNVIRVWQ 314
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 114/249 (45%), Gaps = 14/249 (5%)
Query: 45 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCA 104
+ +R L GH + + + D R +++ S D + VWD T ++ + V+
Sbjct: 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 105 YAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM 164
+ +G V C D +++ + + ++ + R L GH ++ F DD IV++SGD
Sbjct: 221 FN-NGMMVTCSK-DRSIAVWDMAS-PTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDR 276
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG 224
+ +W+ T + + GH + L R VSG+ D + +LWDI G+C + G
Sbjct: 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL 284
HE + + F + +G+ D +++D+ A L + +C T V SGR+
Sbjct: 335 HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA--ALDPRAPAGTLCLRTLV--EHSGRV 388
Query: 285 LLAGYDDFN 293
+D+F
Sbjct: 389 FRLQFDEFQ 397
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 15/196 (7%)
Query: 149 CRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASA 208
C DD +IV+ D + +WD T + GHTG V+ L D R ++G+ D++
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTV 195
Query: 209 KLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN 268
++WD+ G T H + + F N T S D + ++D+ + ++ +
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLR---R 250
Query: 269 IICG----ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG 324
++ G + V F + +++ D VW++ E L GH ++CL +
Sbjct: 251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-- 306
Query: 325 MAVATGSWDSFLRIWN 340
V +GS D+ +R+W+
Sbjct: 307 RLVVSGSSDNTIRLWD 322
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 40/123 (32%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
R L GH + + + D++ +VS + DGK+ VWD V A+ R AP+
Sbjct: 330 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL-----VAALDPR---------APA 373
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCAL 168
G+ R L H+G + +F D+ QIV+SS D + +
Sbjct: 374 GTLCL-----------------------RTLVEHSGRVFRLQF-DEFQIVSSSHDDTILI 409
Query: 169 WDI 171
WD
Sbjct: 410 WDF 412
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 43/325 (13%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDSYTTNKVHAIPLR-----SSWVM 101
+ T+R H + A+ D+ ++ VSAS+D +I+W +K + + R S +V
Sbjct: 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE 434
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG-YLSCCRFLDDNQIVTS 160
+ G F G D ++ L +R GHT LS LD+ QIV++
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVS----TRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 161 SGDMSCALWDIETGQQCASFI-----GHTGDVMSLSLAPD--MRTFVSGACDASAKLWDI 213
S D + LW+ T +C I GH V + +P+ T VS + D + K+W++
Sbjct: 491 SRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI 273
+ + T GH ++ V P+G A+G D L+D+ ++L +++ I
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV---I 605
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWD-----------------SMKTERAGILAGHDNRVS 316
++ FS + R L + +WD + K + +G A +
Sbjct: 606 HALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664
Query: 317 C--LGVTEDGMAVATGSWDSFLRIW 339
C L + DG + +G D +R+W
Sbjct: 665 CTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 82/209 (39%), Gaps = 48/209 (22%)
Query: 137 RELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPD 195
R L GH+ ++ D Q S S D LWD+ G F+GHT DV+S++ + D
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 196 MRTFVSGACDASAKLWDIRDGSCKQTF----PGHESDINAVTFFPNGWAFATGSDDATCR 251
R VS + D + KLW+ G CK T GH ++ V F PN
Sbjct: 484 NRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPN-------------- 528
Query: 252 LFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGH 311
+ I S ++ ++ VW+ + LAGH
Sbjct: 529 ----------------TLQPTIVSASWDKT------------VKVWNLSNCKLRSTLAGH 560
Query: 312 DNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
VS + V+ DG A+G D + +W+
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWD 589
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 46 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAY 105
+ R TL GH + + D S +DG +++WD K++++ S C +
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC-F 610
Query: 106 APSGSFVACGGLDNICSIYSLKTR 129
+P+ + C ++ I+ L+++
Sbjct: 611 SPN-RYWLCAATEHGIKIWDLESK 633
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 20/313 (6%)
Query: 43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT 102
I+ +R +R H +Y + D + + S D L V+ + T K+ I V+
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 669
Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ---IVT 159
CA++ S++A D I+ T ++ H+ ++CC F + + + T
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATG----KLVHTYDEHSEQVNCCHFTNKSNHLLLAT 725
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-- 217
S D LWD+ + + GHT V +PD S + D + +LWD+R +
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 218 ----CKQTFPGHESDINAVTFFPNGWAFATGSDDATCR------LFDIRADQELAMYSHD 267
K+ F E V +++ D LFDI LA H
Sbjct: 786 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HT 844
Query: 268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV 327
I FS L + + +W+ + GH + V + + DG +
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 904
Query: 328 ATGSWDSFLRIWN 340
T S D +R+W
Sbjct: 905 LTASDDQTIRVWE 917
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 30/298 (10%)
Query: 52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF 111
RGHL+ ++ + + D + ++AS D + VW++ K AI L+ + + + +
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE--IDVVFQENETM 943
Query: 112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDI 171
V +DNI + + + G + E +SCC L + + GD A+ I
Sbjct: 944 VL--AVDNIRGLQLIAGKTGQIDYLPE-----AQVSCC-CLSPHLEYVAFGDEDGAIKII 995
Query: 172 E--TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI 229
E + +S +GH V + D +T +S + D+ ++W+ + G H+ +
Sbjct: 996 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETV 1054
Query: 230 NAVTFFPNG----WAFATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSG 282
+ W+F D T +++++ R +++ + + C I+S A S
Sbjct: 1055 KDFRLLQDSRLLSWSF-----DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS- 1108
Query: 283 RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ D +W L GH+ V C + DG+ +ATG + +RIWN
Sbjct: 1109 ----STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 24/269 (8%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
++ H ++ + SD + + S D K+ +WDS T VH S V C + +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 111 --FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCA 167
+A G D ++ L +E + GHT ++ CRF D++++ S S D +
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKE----CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK-------------LWDIR 214
LWD+ + + S I +S P+ + C SA L+DI
Sbjct: 776 LWDVRSANERKS-INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 834
Query: 215 -DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI 273
G + GH S I F P L++I D L + + +
Sbjct: 835 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI--DSRLKVADCRGHLSWV 892
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSMKT 302
V FS G L DD VW++ K
Sbjct: 893 HGVMFSPDGSSFLTASDDQTIRVWETKKV 921
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/332 (19%), Positives = 127/332 (38%), Gaps = 35/332 (10%)
Query: 30 LVTATGNMEPIGRI----QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY 85
L+ ATG+ + ++ Q R T+ GH + + D L S S DG L +WD
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 86 TTNKVHAIPLRSSW-------------VMTCAYAPSGSFVACGGLDNICSIYSLKTREGN 132
+ N+ +I ++ + V C+++ G + + + ++ + T
Sbjct: 781 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLL 839
Query: 133 VRVSRELPGHTGYLSCCRFLD----DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM 188
+ HTG+ S ++ D D+ V + LW+I++ + A GH V
Sbjct: 840 AEI------HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 248
+ +PD +F++ + D + ++W+ + CK + + +I+ V F D+
Sbjct: 894 GVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVLKQEIDVV--FQENETMVLAVDNI 950
Query: 249 TCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL 308
++ + C S + G +D + +
Sbjct: 951 RGLQLIAGKTGQIDYLPEAQVSC----CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 1006
Query: 309 AGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
GH V + T DG + + S DS +++WN
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
L+ H + DSR L+S S DG + VW+ T V++CA + +
Sbjct: 1047 LQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSCALW 169
+ D I+S + EL GH G + C F LD + T + +W
Sbjct: 1106 KFSSTSADKTAKIWSFDL----LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 170 DIETGQ---QCASF------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ 220
++ GQ CA H G V + +PD +T VS K W++ G Q
Sbjct: 1162 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQ 1219
Query: 221 TFPGHESDINAVTFFPNGWAFAT 243
TF + +++ + P+ + T
Sbjct: 1220 TFYTNGTNLKKIHVSPDFRTYVT 1242
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 6/172 (3%)
Query: 35 GNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP 94
G ++ I R R H + + SD+ S S D +W + +H +
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1131
Query: 95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE-----GNVRVSRELPGHTGYLSCC 149
+ V A++ G +A G + I+++ + + V H G+++
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 150 RFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS 201
F D++ + S+G W++ TG +F + ++ + ++PD RT+V+
Sbjct: 1192 CFSPDSKTLVSAGGY-LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1242
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 118/313 (37%), Gaps = 20/313 (6%)
Query: 43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT 102
I+ +R +R H +Y + D + + S D L V+ + T K+ I V+
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 662
Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ---IVT 159
CA++ S++A D I+ T ++ H+ ++CC F + + + T
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATG----KLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718
Query: 160 SSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS-- 217
S D LWD+ + + GHT V +PD S + D + +LWD+R +
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 218 ----CKQTFPGHESDINAVTFFPNGWAFATGSDDATCR------LFDIRADQELAMYSHD 267
K+ F E V +++ D LFDI LA H
Sbjct: 779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI-HT 837
Query: 268 NIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAV 327
I FS L + + +W+ + GH + V + + DG +
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 328 ATGSWDSFLRIWN 340
T S D +R+W
Sbjct: 898 LTASDDQTIRVWE 910
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 126/298 (42%), Gaps = 30/298 (10%)
Query: 52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF 111
RGHL+ ++ + + D + ++AS D + VW++ K AI L+ + + + +
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE--IDVVFQENETM 936
Query: 112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDI 171
V +DNI + + + G + E +SCC L + + GD A+ I
Sbjct: 937 VL--AVDNIRGLQLIAGKTGQIDYLPE-----AQVSCC-CLSPHLEYVAFGDEDGAIKII 988
Query: 172 E--TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI 229
E + +S +GH V + D +T +S + D+ ++W+ + G H+ +
Sbjct: 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETV 1047
Query: 230 NAVTFFPNG----WAFATGSDDATCRLFDI---RADQELAMYSHDNIICGITSVAFSRSG 282
+ W+F D T +++++ R +++ + + C I+S A S
Sbjct: 1048 KDFRLLQDSRLLSWSF-----DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFS- 1101
Query: 283 RLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ D +W L GH+ V C + DG+ +ATG + +RIWN
Sbjct: 1102 ----STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 102/269 (37%), Gaps = 24/269 (8%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
++ H ++ + SD + + S D K+ +WDS T VH S V C + +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 111 --FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCA 167
+A G D ++ L +E + GHT ++ CRF D++++ S S D +
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKE----CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 168 LWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK-------------LWDIR 214
LWD+ + + S I +S P+ + C SA L+DI
Sbjct: 769 LWDVRSANERKS-INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827
Query: 215 -DGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI 273
G + GH S I F P L++I D L + + +
Sbjct: 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI--DSRLKVADCRGHLSWV 885
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSMKT 302
V FS G L DD VW++ K
Sbjct: 886 HGVMFSPDGSSFLTASDDQTIRVWETKKV 914
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 131/335 (39%), Gaps = 41/335 (12%)
Query: 30 LVTATGNMEPIGRI----QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY 85
L+ ATG+ + ++ Q R T+ GH + + D L S S DG L +WD
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 86 TTNKVHAIPLRSSW-------------VMTCAYAPSGSFVACGGLDNICSIYSLKTREGN 132
+ N+ +I ++ + V C+++ G + + + ++ + T
Sbjct: 774 SANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLL 832
Query: 133 VRVSRELPGHTGYLSCCRFLD----DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVM 188
+ HTG+ S ++ D D+ V + LW+I++ + A GH V
Sbjct: 833 AEI------HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 189 SLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA 248
+ +PD +F++ + D + ++W+ + CK + + +I+ V F D
Sbjct: 887 GVMFSPDGSSFLTASDDQTIRVWETKK-VCKNSAIVLKQEIDVV--FQENETMVLAVD-- 941
Query: 249 TCRLFDIRADQELAMYSHDNIICGITSVA---FSRSGRLLLAGYDDFNCNVWDSMKTERA 305
+IR Q +A + V+ S + G +D + +
Sbjct: 942 -----NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996
Query: 306 GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
GH V + T DG + + S DS +++WN
Sbjct: 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
L+ H + DSR L+S S DG + VW+ T V++CA + +
Sbjct: 1040 LQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF-LDDNQIVTSSGDMSCALW 169
+ D I+S + EL GH G + C F LD + T + +W
Sbjct: 1099 KFSSTSADKTAKIWSFDL----LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 170 DIETGQ---QCASF------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQ 220
++ GQ CA H G V + +PD +T VS K W++ G Q
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQ 1212
Query: 221 TFPGHESDINAVTFFPNGWAFAT 243
TF + +++ + P+ + T
Sbjct: 1213 TFYTNGTNLKKIHVSPDFRTYVT 1235
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 71/172 (41%), Gaps = 6/172 (3%)
Query: 35 GNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP 94
G ++ I R R H + + SD+ S S D +W + +H +
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124
Query: 95 LRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTRE-----GNVRVSRELPGHTGYLSCC 149
+ V A++ G +A G + I+++ + + V H G+++
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 150 RFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS 201
F D++ + S+G W++ TG +F + ++ + ++PD RT+V+
Sbjct: 1185 CFSPDSKTLVSAGGY-LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT 1235
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 118/316 (37%), Gaps = 34/316 (10%)
Query: 47 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYA 106
+R +R H +Y + D + + S D L V+ + T K+ I V+ CA++
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFS 672
Query: 107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQ---IVTSSGD 163
F+A +D I++ T E + H+ ++CC F + + + T S D
Sbjct: 673 TDDRFIATCSVDKKVKIWNSMTGE----LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
LWD+ + + GHT V +PD + S + D + KLWD + +++
Sbjct: 729 CFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS-- 786
Query: 224 GHESDINAVTFFPN---------------GW----AFATGSDDATCRLFDIRADQELAMY 264
IN FF N W A + LFDI L
Sbjct: 787 -----INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEI 841
Query: 265 SHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDG 324
H I FS L + + +W++ + GH + V + + DG
Sbjct: 842 -HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDG 900
Query: 325 MAVATGSWDSFLRIWN 340
+ T S D +R+W
Sbjct: 901 SSFLTSSDDQTIRLWE 916
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 96/264 (36%), Gaps = 62/264 (23%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
++ H ++ + +D R + + S D K+ +W+S T VH S V C + S
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 111 --FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCA 167
+A G D ++ L +E + GHT ++ CRF D++++ S S D +
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKE----CRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLK 774
Query: 168 LWD-------------------------IETGQQCASF---------------------- 180
LWD +E +C S+
Sbjct: 775 LWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHT 834
Query: 181 --------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV 232
GH + +P V +LW+ S GH S ++ V
Sbjct: 835 SGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGV 894
Query: 233 TFFPNGWAFATGSDDATCRLFDIR 256
F P+G +F T SDD T RL++ +
Sbjct: 895 MFSPDGSSFLTSSDDQTIRLWETK 918
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 55/261 (21%)
Query: 35 GNMEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIP 94
G +E + + R ++ H ++ + + +D + L+S+S D ++ VW+
Sbjct: 989 GAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN----------- 1037
Query: 95 LRSSWVM-TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLD 153
W + C + L GH + R L
Sbjct: 1038 ----WQLDKCIF---------------------------------LRGHQETVKDFRLLK 1060
Query: 154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDI 213
++++++ S D + +W+I TG + F+ H G V+S ++ D F S + D +AK+W
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 214 RDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL---AMYSHDNII 270
GH + F + ATG D+ R++++ + L A S +
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 271 CG---ITSVAFSRSGRLLLAG 288
+T + FS G++L++
Sbjct: 1181 THGGWVTDLCFSPDGKMLISA 1201
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/370 (18%), Positives = 143/370 (38%), Gaps = 71/370 (19%)
Query: 30 LVTATGNMEPIGRI----QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY 85
L+ ATG+ + ++ Q R T+ GH + + D + L S S DG L +WD+
Sbjct: 720 LLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT 779
Query: 86 TTNKVHAIPLRSSW-------------VMTCAYAPSGSFVACGGLDNICSIYSLKTR--E 130
+ N+ +I ++ + V C+++ G+ + + I ++ + T
Sbjct: 780 SANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLL 838
Query: 131 GNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCA-LWDIETGQQCASFIGHTGDVMS 189
G + GH + C F N + + C LW+ ++ + A GH V
Sbjct: 839 GEIHT-----GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHG 893
Query: 190 LSLAPDMRTFVSGACDASAKLWDIRDGSCK------------------------------ 219
+ +PD +F++ + D + +LW+ + CK
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETK-KVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRL 952
Query: 220 QTFPGHESDINAVT--------FFPNGWAFATGSDDATCRLFDIRADQEL-AMYSHDNII 270
Q G I+ +T P+ A G ++ + ++ ++ + + H +
Sbjct: 953 QLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Query: 271 CGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 330
I F+ + L++ DD VW+ + ++ L GH V + ++ + +
Sbjct: 1013 WHI---QFTADEKTLISSSDDAEIQVWN-WQLDKCIFLRGHQETVKDFRLLKNS-RLLSW 1067
Query: 331 SWDSFLRIWN 340
S+D +++WN
Sbjct: 1068 SFDGTVKVWN 1077
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 121/300 (40%), Gaps = 34/300 (11%)
Query: 52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF 111
RGHL+ ++ + + D + +++S D + +W++ K A+ L+ + + +
Sbjct: 885 RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQE--VDVVFQENEVM 942
Query: 112 VACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDI 171
V +D+I + + R G + E +SCC Q + + GD + A+ +
Sbjct: 943 VL--AVDHIRRLQLINGRTGQIDYLTE-----AQVSCCCLSPHLQYI-AFGDENGAIEIL 994
Query: 172 E--TGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDI 229
E + S H V + D +T +S + DA ++W+ + C GH+ +
Sbjct: 995 ELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETV 1053
Query: 230 NAVTFFPNG----WAFATGSDDATCRLFDI-RADQELAMYSHDNII--CGIT--SVAFSR 280
N W+F D T ++++I ++E H + C I+ + FS
Sbjct: 1054 KDFRLLKNSRLLSWSF-----DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSS 1108
Query: 281 SGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ D +W L GH+ V C + D +ATG + +RIWN
Sbjct: 1109 TSA-------DKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 54/200 (27%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
LRGH + +SR L+S S DG + VW+ T NK V++C + +
Sbjct: 1046 LRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 111 FVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV------------ 158
+ D I+S + EL GH G + C F D+ ++
Sbjct: 1105 KFSSTSADKTAKIWSFDL----LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 159 -TSSGDMS--CAL----------------------------------WDIETGQQCASFI 181
S+G++ CA W++ TG+ +F
Sbjct: 1161 NVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQTFY 1220
Query: 182 GHTGDVMSLSLAPDMRTFVS 201
+ ++ + ++PD +T+V+
Sbjct: 1221 TNGTNLKKIHVSPDFKTYVT 1240
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIY 124
S N+++ + D + +W + + + + + + ++ + A+ G+++A G
Sbjct: 115 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-------TS 167
Query: 125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW--DIETGQQ-CASFI 181
S + + +V+ + L T + + L N + SSG S + D+ + A+
Sbjct: 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 227
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP- 236
GH+ +V L APD R SG D +W G QTF H+ + AV + P
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 294
N A G+ D R++++ + L+ + +C S+ +S + L++G+ F
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FAQ 343
Query: 295 N---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
N +W + L GH +RV L ++ DG VA+ + D LR+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 27/178 (15%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS-----SWVMTCA 104
TL GH ++ + W D R+L S D + VW S + +PL++ V A
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEGGWVPLQTFTQHQGAVKAVA 283
Query: 105 YAP-SGSFVACGG--------LDNICSIYSLKTREGNVRVSREL--PGHTGYLSCCRFLD 153
+ P + +A GG + N+CS L + + +V L P + +S F
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW 211
NQ+V +W T + A GHT V+SL+++PD T S A D + +LW
Sbjct: 344 -NQLV---------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIY 124
S N+++ + D + +W + + + + + + ++ + A+ G+++A G
Sbjct: 126 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-------TS 178
Query: 125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW--DIETGQQ-CASFI 181
S + + +V+ + L T + + L N + SSG S + D+ + A+
Sbjct: 179 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 238
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP- 236
GH+ +V L APD R SG D +W G QTF H+ + AV + P
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 294
N A G+ D R++++ + L+ + +C S+ +S + L++G+ F
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FAQ 354
Query: 295 N---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
N +W + L GH +RV L ++ DG VA+ + D LR+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 27/178 (15%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS-----SWVMTCA 104
TL GH ++ + W D R+L S D + VW S + +PL++ V A
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEGGWVPLQTFTQHQGAVKAVA 294
Query: 105 YAP-SGSFVACGG--------LDNICSIYSLKTREGNVRVSREL--PGHTGYLSCCRFLD 153
+ P + +A GG + N+CS L + + +V L P + +S F
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 154 DNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW 211
NQ+V +W T + A GHT V+SL+++PD T S A D + +LW
Sbjct: 355 -NQLV---------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 128/288 (44%), Gaps = 26/288 (9%)
Query: 67 SRNLVSASQDGKLIVWDSYTTNKVHAIPLRS--SWVMTCAYAPSGSFVACGGLDNICSIY 124
S N+++ + D + +W + + + + + + ++ + A+ G+++A G
Sbjct: 35 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-------TS 87
Query: 125 SLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW--DIETGQQ-CASFI 181
S + + +V+ + L T + + L N + SSG S + D+ + A+
Sbjct: 88 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS 147
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGS----CKQTFPGHESDINAVTFFP- 236
GH+ +V L APD R SG D +W G QTF H+ + AV + P
Sbjct: 148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 237 --NGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNC 294
N A G+ D R++++ + L+ + +C S+ +S + L++G+ F
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC---SILWSPHYKELISGHG-FAQ 263
Query: 295 N---VWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
N +W + L GH +RV L ++ DG VA+ + D LR+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 27/186 (14%)
Query: 42 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRS---- 97
R+ TL GH ++ + W D R+L S D + VW S + +PL++
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEGGWVPLQTFTQH 195
Query: 98 -SWVMTCAYAP-SGSFVACGG--------LDNICSIYSLKTREGNVRVSREL--PGHTGY 145
V A+ P + +A GG + N+CS L + + +V L P +
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255
Query: 146 LSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACD 205
+S F NQ+V +W T + A GHT V+SL+++PD T S A D
Sbjct: 256 ISGHGFAQ-NQLV---------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 305
Query: 206 ASAKLW 211
+ +LW
Sbjct: 306 ETLRLW 311
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 24/224 (10%)
Query: 139 LPGH-TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
L GH T ++C +F +DN ++T + D ++D + GH G V +L A
Sbjct: 117 LRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 174
Query: 198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VTFFPNGWAFATGSDDATCRLFDI 255
VSG+ D + ++WDI+ G C F GH S + + + N TGS D T ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 256 RADQELAMY--SHDNIIC----------------GITSV-AFSRSGRLLLAGYDDFNCNV 296
+ + + HD + + SV S G ++++G D V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + + IL+GH +R+ + + S D+ +RIW+
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 29/310 (9%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV--MTCAYAPS 108
L GH ++A+ + LVS S D + VWD H +S V + +
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 109 GSFVACGGLDNICSIYSLKTREGNVRVSRE-----LPGHT------------GYLSCCRF 151
++ G DN ++ L +E +V E L HT G+++ R
Sbjct: 217 IKYIVTGSRDNTLHVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 152 LDD--NQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK 209
+ N +V+ S D + +WD+ + GHT + S + + +S + D + +
Sbjct: 276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 210 LWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI 269
+WD+ +G T GH + + + + + + D + R +D Y H N
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN- 392
Query: 270 ICGITSVAFSRSGRLLLAGYDD-FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA 328
+ IT+ F S +L++G ++ FN S K A IL D S + +A
Sbjct: 393 LSAITT--FYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450
Query: 329 TGSWDSFLRI 338
SFL I
Sbjct: 451 EKDGQSFLEI 460
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 44 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 83
QM+ L GH +IY+ + + + +SAS D + +WD
Sbjct: 299 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 96/224 (42%), Gaps = 24/224 (10%)
Query: 139 LPGH-TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMR 197
L GH T ++C +F +DN ++T + D ++D + GH G V +L A
Sbjct: 117 LRGHXTSVITCLQF-EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G 174
Query: 198 TFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VTFFPNGWAFATGSDDATCRLFDI 255
VSG+ D + ++WDI+ G C F GH S + + + N TGS D T ++ +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 256 RADQELAMY--SHDNIICGITSV-----------------AFSRSGRLLLAGYDDFNCNV 296
+ + + HD + T S G ++++G D V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
WD + + IL+GH +R+ + + S D+ +RIW+
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 115/310 (37%), Gaps = 29/310 (9%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV--MTCAYAPS 108
L GH ++A+ + LVS S D + VWD H +S V + +
Sbjct: 158 LSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 109 GSFVACGGLDNICSIYSL-------------------KTREGNVRVSRELPGHTGYLSCC 149
++ G DN ++ L T E N L GH +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 150 RFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK 209
N +V+ S D + +WD+ + GHT + S + + +S + D + +
Sbjct: 277 SG-HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 210 LWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNI 269
+WD+ +G T GH + + + + + + D + R +D Y H N
Sbjct: 336 IWDLENGELXYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN- 392
Query: 270 ICGITSVAFSRSGRLLLAGYDD-FNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVA 328
+ IT+ F S +L++G ++ FN S K A IL D S + +A
Sbjct: 393 LSAITT--FYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450
Query: 329 TGSWDSFLRI 338
SFL I
Sbjct: 451 EKDGQSFLEI 460
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
WV+T Y SG V + + S++ E VR + + N I+
Sbjct: 27 WVLTTLY--SGR-VELWNYETQVEVRSIQVTETPVRAGKFI------------ARKNWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
S D +++ TG++ F H + S+++ P +SG+ D + KLW+ + +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
+QTF GHE + V F P + FA+G D T +++ + ++ + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
++ DD +WD L GH + VS + +GS D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
L+IWN
Sbjct: 252 LKIWN 256
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 12/192 (6%)
Query: 70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR 129
++ S D ++ V++ T KV ++ + A P+ +V G D +++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--- 126
Query: 130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG--DMSCALWDIETGQQCASFIGHTGDV 187
E N + + GH ++ C F + +SG D + +W + GQ +F TG
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQE 184
Query: 188 MSLSLA-----PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 242
++ PD ++ + D + K+WD + SC T GH S+++ F P
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 243 TGSDDATCRLFD 254
+GS+D T ++++
Sbjct: 245 SGSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTNKVHAIPLRSSWVMTCAYAP 107
TL GH++ + + ++S S+DG L +W+S Y K + L SW +
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 108 SGSFVACGGLDNICSIYSLKTRE 130
+++A G DN ++ SL E
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
WV+T Y SG V + + S++ E VR + + N I+
Sbjct: 27 WVLTTLY--SGR-VELWNYETQVEVRSIQVTETPVRAGKFI------------ARKNWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
S D +++ TG++ F H + S+++ P +SG+ D + KLW+ + +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
+QTF GHE + V F P + FA+G D T +++ + ++ + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
++ DD +WD L GH + VS + +GS D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
L+IWN
Sbjct: 252 LKIWN 256
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 12/192 (6%)
Query: 70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR 129
++ S D ++ V++ T KV ++ + A P+ +V G D +++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--- 126
Query: 130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG--DMSCALWDIETGQQCASFIGHTGDV 187
E N + + GH ++ C F + +SG D + +W + GQ +F TG
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQE 184
Query: 188 MSLSLA-----PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 242
++ PD ++ + D + K+WD + SC T GH S+++ F P
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 243 TGSDDATCRLFD 254
+GS+D T ++++
Sbjct: 245 SGSEDGTLKIWN 256
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTNKVHAIPLRSSWVMTCAYAP 107
TL GH++ + + ++S S+DG L +W+S Y K + L SW +
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 108 SGSFVACGGLDNICSIYSLKTRE 130
+++A G DN ++ SL E
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGNDE 304
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
WV+T Y SG V + + S++ E VR + + N I+
Sbjct: 27 WVLTTLY--SGR-VELWNYETQVEVRSIQVTETPVRAGKFIARK------------NWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
S D +++ TG++ F H + S+++ P +SG+ D + KLW+ + +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
+QTF GHE + V F P + FA+G D T +++ + ++ + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
++ DD +WD L GH + VS + +GS D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
L+IWN
Sbjct: 252 LKIWN 256
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 12/192 (6%)
Query: 70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR 129
++ S D ++ V++ T KV ++ + A P+ +V G D +++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--- 126
Query: 130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG--DMSCALWDIETGQQCASFIGHTGDV 187
E N + + GH ++ C F + +SG D + +W + GQ +F TG
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQE 184
Query: 188 MSLSLA-----PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 242
++ PD ++ + D + K+WD + SC T GH S+++ F P
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 243 TGSDDATCRLFD 254
+GS+D T ++++
Sbjct: 245 SGSEDGTLKIWN 256
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTNKVHAIPLRSSWVMTCAYAP 107
TL GH++ + + ++S S+DG L +W+S Y K + L SW +
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 108 SGSFVACGGLDNICSIYSLKTRE 130
+++A G DN ++ SL E
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGNDE 304
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 99/245 (40%), Gaps = 18/245 (7%)
Query: 99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
WV+T Y SG V + + S++ E VR + + N I+
Sbjct: 27 WVLTTLY--SGR-VEIWNYETQVEVRSIQVTETPVRAGKFIARK------------NWII 71
Query: 159 TSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG-S 217
S D +++ TG++ F H + S+++ P +SG+ D + KLW+ + +
Sbjct: 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131
Query: 218 CKQTFPGHESDINAVTFFPNGWA-FATGSDDATCRLFDI-RADQELAMYSHDNIICGITS 275
+QTF GHE + V F P + FA+G D T +++ + ++ + +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 276 VAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSF 335
++ DD +WD L GH + VS + +GS D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 336 LRIWN 340
L+IWN
Sbjct: 252 LKIWN 256
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 12/192 (6%)
Query: 70 LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTR 129
++ S D ++ V++ T KV ++ + A P+ +V G D +++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--- 126
Query: 130 EGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG--DMSCALWDIETGQQCASFIGHTGDV 187
E N + + GH ++ C F + +SG D + +W + GQ +F TG
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQE 184
Query: 188 MSLSLA-----PDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFA 242
++ PD ++ + D + K+WD + SC T GH S+++ F P
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 243 TGSDDATCRLFD 254
+GS+D T ++++
Sbjct: 245 SGSEDGTLKIWN 256
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS--YTTNKVHAIPLRSSWVMTCAYAP 107
TL GH++ + + ++S S+DG L +W+S Y K + L SW +
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 108 SGSFVACGGLDNICSIYSLKTRE 130
+++A G DN ++ SL E
Sbjct: 283 RKNYIAS-GFDNGFTVLSLGNDE 304
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 130/286 (45%), Gaps = 29/286 (10%)
Query: 69 NLVSASQDGKLIVWDSYTTNKVHAIPL--RSSWVMTCAYAPSGSFVACGGLDNICSIYSL 126
N+V+ + + + VW++ + V A+ S++V + ++ GSF++ G + + IY +
Sbjct: 105 NVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Query: 127 KTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET---GQQCASFIGH 183
+++ R + GH + C + N+ V SSG S A+ + Q + GH
Sbjct: 164 ESQTK----LRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216
Query: 184 TGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP---NGWA 240
+ +V L+ D SG D ++WD R K T H + + AV + P N A
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 241 FATGSDDATCRLFDIRADQELAMYSHDNIICG--ITSVAFSRSGRLLLA--GYDDFNCNV 296
G+ D ++ + + + G +TS+ +S + +++ G+ D N ++
Sbjct: 277 TGGGTMDKQIHFWNAATGARV-----NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 297 W---DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
W S T++ I A HD RV ++ DG ++T + D L+ W
Sbjct: 332 WSYSSSGLTKQVDIPA-HDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 86/201 (42%), Gaps = 12/201 (5%)
Query: 42 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVM 101
RI TL+GH +++ + W SD L S D + +WD+ ++ ++ V
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263
Query: 102 TCAYAP-SGSFVACGG--LDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIV 158
A+ P + +A GG +D ++ T RV+ G + S +I+
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDAG-SQVTSLIWSPHSKEIM 319
Query: 159 TSSG--DMSCALWDIETG--QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIR 214
++ G D + ++W + + H V+ +L+PD R + A D + K W +
Sbjct: 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379
Query: 215 DG-SCKQTFPGHESDINAVTF 234
DG K+ P ++ +++T
Sbjct: 380 DGDHVKRPIPITKTPSSSITI 400
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 13/221 (5%)
Query: 43 IQMRTR-RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTN-KVHAIPLRSSWV 100
++ +T+ RT+ GH A++ + W + L S S+ G + D N ++ + SS V
Sbjct: 163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220
Query: 101 MTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTS 160
A+ G +A GG DN+ I+ ++ + C N + T
Sbjct: 221 CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP--WQSNLLATG 278
Query: 161 SG--DMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVS--GACDASAKLWDI-RD 215
G D W+ TG + + + V SL +P + +S G D + +W
Sbjct: 279 GGTMDKQIHFWNAATGARVNT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337
Query: 216 GSCKQT-FPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 255
G KQ P H++ + P+G +T + D + + +
Sbjct: 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 300 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ + G L GH + V L DG+ +A+G D+ ++IW+
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 31/239 (12%)
Query: 43 IQMRTRRTLRGH------LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYT--TNKVHAIP 94
IQ+ R L GH + ++ DS L+S S+D +++W Y N IP
Sbjct: 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP 68
Query: 95 LRS-----SWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCC 149
++ +V A + F D ++ L+T + GH +
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG----TTYKRFVGHQSEVYSV 124
Query: 150 RFLDDN-QIVTSSGDMSCALWDI--ETGQQCASFIGHTGDVMSLSLAPDMRT-------- 198
F DN QI+++ + LW+I E A H+ V + +P M++
Sbjct: 125 AFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA 184
Query: 199 --FVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDI 255
F S D K+W+ + + TF HES++N ++ PNG ATG D ++DI
Sbjct: 185 PYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 94/235 (40%), Gaps = 47/235 (20%)
Query: 115 GGLDNICSIYSLKTREGNVRVS---RELPGHTGYLSCCRFLDDNQI-VTSSGDMSCALWD 170
G D I+ L E N + L GH ++S +N ++SS D + LWD
Sbjct: 45 GSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
Query: 171 IETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDIN 230
+ TG F+GH +V S++ +PD R +S + KLW+I G CK F E +
Sbjct: 105 LRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECK--FSSAEKE-- 159
Query: 231 AVTFFPNGWAFATGSDDATCRLF-----DIRADQELAMYSHDNIICGITSVAFSRSGRLL 285
SD +C + Q A Y SV + GRL
Sbjct: 160 ------------NHSDWVSCVRYSPIMKSANKVQPFAPY--------FASVGW--DGRL- 196
Query: 286 LAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
VW++ R A H++ V+ L ++ +G +ATG D L IW+
Sbjct: 197 ---------KVWNTNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 108/272 (39%), Gaps = 38/272 (13%)
Query: 48 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAP 107
+ L GH + + ++ +S+S D L +WD T S V + A++P
Sbjct: 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 108 SGSFVACGGLDNICSIYSLKTREGNVRVSR-ELPGHTGYLSCCRF----LDDNQIVTSSG 162
+ G + ++++ G + S E H+ ++SC R+ N++ +
Sbjct: 129 DNRQILSAGAEREIKLWNIL---GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP 185
Query: 163 DMSCALWDIETG------QQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG 216
+ WD Q +F H +V LS++P+ + +G D +WDI +
Sbjct: 186 YFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN- 244
Query: 217 SCKQTFPGHESD----INAVTFFPNGWAFATGSDDATCRLFDIRADQELAM--------- 263
T+P E D IN + F P A G+D ++F++ + +
Sbjct: 245 ---LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFNLMTQSKAPVCTIEAEPIT 300
Query: 264 ----YSHDNIICGITSVAFSRSGRLLLAGYDD 291
N C TS+A++ G+ L AG+ D
Sbjct: 301 KAEGQKGKNPQC--TSLAWNALGKKLFAGFTD 330
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 253 FDIRADQELAMYSHDNIICGITSVAFSRS----GRLLLAGYDDFNCNVWDSMKTERAGI- 307
DI+ + + H + + I + FS+ +L++G D +W + E+ G
Sbjct: 7 LDIQVVKRGILEGHSDWVTSIVA-GFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF 65
Query: 308 ------LAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
L GH++ VS L ++++ + SWD LR+W+
Sbjct: 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWD 104
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 23/283 (8%)
Query: 31 VTATGNMEP--------IGRIQMRTRRTLR--GHLAKIYAMHWGSDSRNLVSASQDGKLI 80
VTA G M+P IG R R + H + A+ + +R++ + + G +
Sbjct: 17 VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GCVK 75
Query: 81 VWD-SYTTNKVHAIPL----RSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV 135
VWD S+ NK L R +++ +C P G + GG + SI+ L R+
Sbjct: 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP--TPRI 133
Query: 136 SRELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP 194
EL D+++ S D + A+WD+ F GHT + ++
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 195 DMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
D +G D + + WD+R+G Q S I ++ + P G A G + + +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252
Query: 255 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 297
+ + ++ H++ + S+ F+ G+ ++ D N W
Sbjct: 253 VNKPDKYQLHLHESC---VLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 7/198 (3%)
Query: 145 YLSCCRFLDDNQIVTSSGDMS-CALWDI--ETGQQCASFIGHTGDVMSLSLAPDMRTFVS 201
Y+ C+ L D + G+ S ++WD+ T + A +L+++PD + S
Sbjct: 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 202 GACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQEL 261
D + +WD+ + + + F GH + + +G TG D T R +D+R ++L
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 262 AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVT 321
+ + I S+ + +G L G + N V K ++ L H++ V L
Sbjct: 219 QQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFA 274
Query: 322 EDGMAVATGSWDSFLRIW 339
G + D+ L W
Sbjct: 275 YCGKWFVSTGKDNLLNAW 292
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 20/172 (11%)
Query: 181 IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAV-------- 232
+ H V +++++ R +G K+WDI + PG++S ++ +
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI-------SHPGNKSPVSQLDCLNRDNY 99
Query: 233 ----TFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAG 288
P+G G + +T ++D+ A + ++A S ++ +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 289 YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
D N VWD GH + SC+ ++ DG + TG D+ +R W+
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 45 MRTRRTLRGH--LAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMT 102
+R R L+ H ++I+++ + L + + V +K + + L S V++
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLS 270
Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREG-NVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
+A G + G DN+ + + +T G ++ S+E + LSC +DD IVT S
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAW--RTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGS 325
Query: 162 GDMSCALWDI 171
GD ++++
Sbjct: 326 GDKKATVYEV 335
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 138 ELPGHTGYLSCCRFLDDNQIVTS-SGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDM 196
+L GH L+ ++ + ++ S S D S ++W G++ + GHTG + S+ +
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 197 RTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDA-----TCR 251
+ V+G+ D S KLWD+ +G C T+ + V F P G F D+ +
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 252 LFDIRAD---QELAMYSHDNI--------ICGITSVAFSRSGRLLLAGYDDFNCNVWD-S 299
+++I D EL S + I + T +S G+ ++AG+ D + +D S
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205
Query: 300 MKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD--SFL 336
E + H+ +S + + D T S D SFL
Sbjct: 206 NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRL 284
HE I+ + F P+ F T S D L D+ Q L Y D C + + +
Sbjct: 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEF 273
Query: 285 LLAG--------------YDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATG 330
++ G F + + E G + GH ++ + ++ G + A+G
Sbjct: 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333
Query: 331 SWDSFLRI 338
D F+R+
Sbjct: 334 GEDGFIRL 341
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSW 332
+T V +++ G LL + D + +VW S+ ER G L GH + + V TGS
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 333 DSFLRIWN 340
D +++W+
Sbjct: 95 DYSIKLWD 102
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 103 CAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD-NQIVTSS 161
++ G ++ G D S Y + N + H +S +F D +TSS
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSN---NYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK---LWDIRDGSC 218
D + L D+ T Q + T ++ ++ ++ F+ AK +G
Sbjct: 238 RDTNSFLVDVSTLQVLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295
Query: 219 KQTF------------PGHESDINAVTFFPNGWAFATGSDDATCRL-------FDIRADQ 259
+ F GH +N V P G ++A+G +D RL FD + D
Sbjct: 296 EARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDV 355
Query: 260 ELAMYSHDNI 269
E A + +++
Sbjct: 356 EKAAEAKEHM 365
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 32/245 (13%)
Query: 89 KVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLK---------TREGNVRVSREL 139
+V A P W + A+ P+G+ +A G D I+ + EG+ R R++
Sbjct: 10 RVPAHPDSRCWFL--AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 140 PGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQ-QCASFI-GHTGDVMSLSLAPDMR 197
+ C N + ++S D + +W +C + + GH +V S++ AP
Sbjct: 68 ----AWSPC-----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 198 TFVSGACDASAKLWDIRDG---SCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
+ + D S +W++ + C H D+ V + P+ A+ S D T +L+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 255 IRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR 314
D + + + + S+AF SG+ L + DD +W L G++
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY-------LPGNEQG 231
Query: 315 VSCLG 319
V+C G
Sbjct: 232 VACSG 236
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 34/223 (15%)
Query: 139 LPGHTGYLSCCRFLDDNQ----IVTSSGDMSCALWDIETGQQ-CASFI--GHTGDVMSLS 191
+P H S C FL N + + GD +W E C S + GH V ++
Sbjct: 11 VPAHPD--SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA 68
Query: 192 LAPDMRTFVSGACDASAKLW--DIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDAT 249
+P S + DA+ +W + D C T GHE+++ +V + P+G AT S D +
Sbjct: 69 WSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS 128
Query: 250 CRLFDIRADQEL----AMYSHDNIICGITSVAFSRSGRLLL-AGYDDFNCNVWDSMKTER 304
++++ + E + SH + V + S LL A YDD ++K R
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQ---DVKHVVWHPSQELLASASYDD-------TVKLYR 178
Query: 305 A--------GILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIW 339
L GH++ V L G +A+ S D +RIW
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 77/209 (36%), Gaps = 52/209 (24%)
Query: 52 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK--VHAIPLRSSWVMTCAYAPSG 109
GH + + W L SAS D +W + V + + V + A+APSG
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW 169
+ +A T S D S +W
Sbjct: 118 NLLA---------------------------------------------TCSRDKSVWVW 132
Query: 170 DI--ETGQQCASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLW--DIRDGSCKQTFPG 224
++ E +C S + HT DV + P S + D + KL+ + D C T G
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLF 253
HES + ++ F P+G A+ SDD T R++
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 93/281 (33%), Gaps = 81/281 (28%)
Query: 50 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSW---VMTCAYA 106
TL GH ++ ++ W L + S+D + VW+ ++ + + +S V +
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 107 PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSC 166
PS +A D+ +Y R +D+ +
Sbjct: 160 PSQELLASASYDDTVKLY-------------------------REEEDDWVC-------- 186
Query: 167 ALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHE 226
CA+ GH V SL+ P + S + D + ++W +Q PG+E
Sbjct: 187 ----------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW-------RQYLPGNE 229
Query: 227 ------------------SDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDN 268
S ++ T + W TG+ C IR QE +
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE-------D 282
Query: 269 IICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILA 309
FS + L A D NC W+ + G+LA
Sbjct: 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP---KEPGLLA 320
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 38 EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLR 96
EP G Q R LRGH + Y + W + L+SAS D + +WD T K H + +
Sbjct: 166 EPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-ID 222
Query: 97 SSWVMTCAYAPSGSFV-------ACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSC 148
+ + T A G + + + TR N + S + HT ++C
Sbjct: 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282
Query: 149 CRFLDDNQIV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGAC 204
F ++ + T S D + ALWD+ + + SF H ++ + +P T + S
Sbjct: 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 205 DASAKLWDI------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDAT 249
D +WD+ DG + F GH + I+ ++ PN W + S+D
Sbjct: 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402
Query: 250 CRLFDI 255
+++ +
Sbjct: 403 MQVWQM 408
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 157 IVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDASA 208
++++S D + LWDI + F GHT V ++ + F S A D
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 256
Query: 209 KLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMY 264
+WD R+ + + T H +++N ++F P + + ATGS D T L+D+R + +L ++
Sbjct: 257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLH 315
Query: 265 SHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
S ++ I V +S +LA D +VWD K
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 38 EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLR 96
EP G Q R LRGH + Y + W + L+SAS D + +WD T K H + +
Sbjct: 168 EPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-ID 224
Query: 97 SSWVMTCAYAPSGSFV-------ACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSC 148
+ + T A G + + + TR N + S + HT ++C
Sbjct: 225 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 284
Query: 149 CRFLDDNQIV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGAC 204
F ++ + T S D + ALWD+ + + SF H ++ + +P T + S
Sbjct: 285 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 205 DASAKLWDI------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDAT 249
D +WD+ DG + F GH + I+ ++ PN W + S+D
Sbjct: 345 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 404
Query: 250 CRLFDI 255
+++ +
Sbjct: 405 MQVWQM 410
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 157 IVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDASA 208
++++S D + LWDI + F GHT V ++ + F S A D
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 258
Query: 209 KLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMY 264
+WD R+ + + T H +++N ++F P + + ATGS D T L+D+R + +L ++
Sbjct: 259 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLH 317
Query: 265 SHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
S ++ I V +S +LA D +VWD K
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 31/246 (12%)
Query: 38 EPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLR 96
EP G Q R LRGH + Y + W + L+SAS D + +WD T K H + +
Sbjct: 170 EPSGECQPDLR--LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-ID 226
Query: 97 SSWVMTCAYAPSGSFV-------ACGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSC 148
+ + T A G + + + TR N + S + HT ++C
Sbjct: 227 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 286
Query: 149 CRFLDDNQIV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGAC 204
F ++ + T S D + ALWD+ + + SF H ++ + +P T + S
Sbjct: 287 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 205 DASAKLWDI------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDAT 249
D +WD+ DG + F GH + I+ ++ PN W + S+D
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 406
Query: 250 CRLFDI 255
+++ +
Sbjct: 407 MQVWQM 412
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 157 IVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDASA 208
++++S D + LWDI + F GHT V ++ + F S A D
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL 260
Query: 209 KLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAMY 264
+WD R+ + + T H +++N ++F P + + ATGS D T L+D+R + +L ++
Sbjct: 261 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLH 319
Query: 265 SHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
S ++ I V +S +LA D +VWD K
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 114/260 (43%), Gaps = 23/260 (8%)
Query: 57 KIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGG 116
++ + W D ++V+ ++G+L +W+ T ++ + + +++ + G+ +
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPIVSVKWNKDGTHIISMD 168
Query: 117 LDNICSIYSLKTREGNVRVSRELP----------GHTGYLSC---CRFLDDNQIVTSSGD 163
++N+ ++++ + G V EL H+G S ++DD++ V
Sbjct: 169 VENVTILWNVIS--GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 164 MSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP 223
+ ++ I IGH G + L + +S + D + ++W +G+ + F
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 224 GHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVA--FSRS 281
GH I + ++ + + S D + RL+ ++ + LA+ +I+ G+ A S+
Sbjct: 287 GHSQSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLLAL----SIVDGVPIFAGRISQD 341
Query: 282 GRLLLAGYDDFNCNVWDSMK 301
G+ + D NV+D K
Sbjct: 342 GQKYAVAFMDGQVNVYDLKK 361
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 73/203 (35%), Gaps = 22/203 (10%)
Query: 153 DDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
D N IVT + LW+ +TG H ++S+ D +S + LW+
Sbjct: 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 213 IRDGSCKQTFPGHE---SDINAVTFFPNG-------WA----FATGSDDATCRLFDIRAD 258
+ G+ Q F E S INA +G W F ++ I
Sbjct: 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK 237
Query: 259 QELA-MYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNR-VS 316
+ H I+ + F+ + +LLL+ DD +W GH VS
Sbjct: 238 TPTGKLIGHHG---PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS 294
Query: 317 CLGVTEDGMAVATGSWDSFLRIW 339
V +D V + S D +R+W
Sbjct: 295 ASWVGDD--KVISCSMDGSVRLW 315
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 313 NRVSCLGVTEDGMAVATGSWDSFLRIWN 340
N+V+CL + DG ++ TG + LR+WN
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN 136
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 51 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
L GH I + + ++ L+SAS DG L +W N + S +++ ++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 111 FVACGGLDNICSIYSLK 127
++C +D ++SLK
Sbjct: 303 VISC-SMDGSVRLWSLK 318
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 156 QIVTSSGDMSCALWDIETGQQ-------CASFIGHTGDVMSLSLAPDMRT-FVSGACDAS 207
++++S D + LWDI G + A F GH+ V ++ + F S A D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 208 AKLWDIRDGSCKQT---FPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAM 263
+WD R + + H +++N ++F P + + ATGS D T L+D+R + +L +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKL 312
Query: 264 YSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
++ ++ I V +S +LA D NVWD K
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 39/236 (16%)
Query: 51 LRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
LRGH + Y + W S+ S +L+SAS D + +WD ++A P V A
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD------INAGPKEGKIVDAKAIFTGH 228
Query: 110 SFVA------------CGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSCCRFLDDNQ 156
S V G + + + TR + S + HT ++C F ++
Sbjct: 229 SAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 157 IV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWD 212
+ T S D + ALWD+ + + +F H ++ + +P T + S D +WD
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 213 I------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDATCRLF 253
+ DG + F GH + I+ ++ PN W + S+D +++
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 27/232 (11%)
Query: 51 LRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWD-SYTTNKVHAIPLRSSWVMTCAYAPS 108
LRGH + Y + W + S +L+SAS D + +WD S + + ++ + A
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 109 GSFVAC-----GGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSCCRFLDDNQIV--TS 160
S+ G + + + TR N + S + HT ++C F ++ + T
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 161 SGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWDI----- 213
S D + ALWD+ + + SF H ++ + +P T + S D +WD+
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE 352
Query: 214 -------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDATCRLFDI 255
DG + F GH + I+ ++ PN W + S+D +++ +
Sbjct: 353 EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 156 QIVTSSGDMSCALWDIETGQQCAS-------FIGHTGDVMSLSLAPDMRT-FVSGACDAS 207
++++S D + LWDI + F GHT V +S + F S A D
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 208 AKLWDIRDGSCKQ---TFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAM 263
+WD R + + + H +++N ++F P + + ATGS D T L+D+R + +L +
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKL 310
Query: 264 YSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK 301
+S ++ I V +S +LA D NVWD K
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 156 QIVTSSGDMSCALWDIETGQQ-------CASFIGHTGDVMSLSLAPDMRT-FVSGACDAS 207
++++S D + LWDI G + A F GH+ V ++ + F S A D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 208 AKLWDIRDGSCKQT---FPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQELAM 263
+WD R + + H +++N ++F P + + ATGS D T L+D+R + +L +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKL 312
Query: 264 YSHDNIICGITSVAFSRSGRLLLAGY-DDFNCNVWDSMK--------------TERAGIL 308
++ ++ I V +S +LA D NVWD K E I
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 309 AGHDNRVSCLG-VTEDGMAVATGSWDSFLRIW 339
GH ++S + + + S D+ ++IW
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 39/238 (16%)
Query: 51 LRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
LRGH + Y + W S+ S +L+SAS D + +WD ++A P V A
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD------INAGPKEGKIVDAKAIFTGH 228
Query: 110 SFVA------------CGGLDNICSIYSLKTREGNV-RVSRELPGHTGYLSCCRFLDDNQ 156
S V G + + + TR + S + HT ++C F ++
Sbjct: 229 SAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 157 IV--TSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTFV-SGACDASAKLWD 212
+ T S D + ALWD+ + + +F H ++ + +P T + S D +WD
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 213 I------------RDGSCKQTF--PGHESDINAVTFFPN-GWAFATGSDDATCRLFDI 255
+ DG + F GH + I+ ++ PN W + S+D +++ +
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 18/228 (7%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKL----IVWDSYTTNKVHAIPLRSSWVMTCA 104
++L+ + KI++ + L + S D K+ + +D +T V + + A
Sbjct: 8 KSLKLYKEKIWSFDFSQGI--LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 105 YAPSGSFVACGGLDNICSIYSLKT---REGNVRVSRELPGHTGYLSCCRFLDDNQ-IVTS 160
+ P S +A G D+ SI++ + R + + + GH + + +D + T
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125
Query: 161 SGDMSCALWDI-ETGQQ--CASFIG-HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDG 216
S D S +W+ E+G++ C S + H+ DV + P S + D + ++W D
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
Query: 217 --SCKQTFPGHESDINAVTFFPNGWAF--ATGSDDATCRLFDIRADQE 260
C GHE + + F F +GSDD+T R++ D E
Sbjct: 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 25/178 (14%)
Query: 182 GHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP--------GHESDINAVT 233
H + S++ P +G+ D++ +W ++ S +TF GHE+++ V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 234 FFPNGWAFATGSDDATCRLFDIRADQE-------LAMYSHDNIICGITSVAFSRSGRLLL 286
+ +G+ AT S D + +++ E L +S D + V + S LL
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-----VKHVIWHPSEALLA 169
Query: 287 AGYDDFNCNVWDSMKT--ERAGILAGHDNRV--SCLGVTEDGMAVATGSWDSFLRIWN 340
+ D +W E +L GH+ V S TE + +GS DS +R+W
Sbjct: 170 SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 235 FPNGWAFATGSDDATCRLFDIRADQELAMYSHDNII--CGITSVAFSRSGRLLLAGYDDF 292
F G ATGS D +L ++ D + D I SVA+ LL AG D
Sbjct: 22 FSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80
Query: 293 NCNVW-------DSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
++W + + + I+ GH+N V + + DG +AT S D + IW
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 43 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNK----VHAIPLRSS 98
+M + GH ++ + W +D L + S+D + +W++ + + + + S
Sbjct: 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 99 WVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF 151
V + PS + +A D+ I+ K + + L GH G + F
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRIW--KDYDDDWECVAVLNGHEGTVWSSDF 205
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 119/295 (40%), Gaps = 28/295 (9%)
Query: 61 MHWGSDSRNLVSASQD----GKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSF-VACG 115
+ W S+S+ + + + G + ++D+ T+N R+ + + + PS F + G
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA--MNSVDFKPSRPFRIISG 166
Query: 116 GLDNICSIYSLKTREGN-VRVSRELPGHTGYLSCCRFLDDNQIVTSSG-DMSCALWDIET 173
DN +I+ EG + HT ++ R+ D + S+G D + L++
Sbjct: 167 SDDNTVAIF-----EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 174 GQQCASF-------IGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFP-GH 225
G + F + H+G V L+ +PD S + D + K+W++ ++T P G
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 226 ESDINAVTFFPNGWAFATGSDDATCRLFDIR-ADQELAMYSHDNIICGITSVAFSRSGRL 284
+ + A + S + + + Y H+ I ++S S G+
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS---SADGKT 338
Query: 285 LLAGYDDFNCNVWD-SMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRI 338
L + + + N WD S H ++ + T G + T SWD L++
Sbjct: 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKV 392
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 242 ATGSDDATCRLFDIRADQ--ELAMYSHDNIICGITSVAFSRSGRLLLAGYDD---FNCNV 296
A G D+ ++ + E+ H ITSVAFS +G L+A +V
Sbjct: 464 AVGGQDSKVHVYKLSGASVSEVKTIVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSV 520
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
++ + H +V+C+ + D + +ATGS D+ + +WN
Sbjct: 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 216 GSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGIT 274
G+ G +N+V F P+ + +GSDD T +F+ + + + +
Sbjct: 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF--VH 194
Query: 275 SVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGIL-------AGHDNRVSCLGVTEDGMAV 327
SV ++ G L + D +++ + + G+ H V L + DG +
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 328 ATGSWDSFLRIWN 340
A+ S D ++IWN
Sbjct: 255 ASASADKTIKIWN 267
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 10/138 (7%)
Query: 85 YTTNKVHAIPLRSSWVMTC-AYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHT 143
Y+ K+ +P+ S+ +C A + FVA GG D+ +Y L G + H
Sbjct: 437 YSHGKLTEVPI--SYNSSCVALSNDKQFVAVGGQDSKVHVYKL---SGASVSEVKTIVHP 491
Query: 144 GYLSCCRFLDDNQ-IVTSSGDMSCALWDIETGQQCA---SFIGHTGDVMSLSLAPDMRTF 199
++ F ++ +V + + + + A S+ HT V +S +PD
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 200 VSGACDASAKLWDIRDGS 217
+G+ D S +W++ S
Sbjct: 552 ATGSLDNSVIVWNMNKPS 569
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 45/195 (23%)
Query: 54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVA 113
H ++ + W D + SAS D + +W+ T IP+ G+ +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-------------GTRIE 284
Query: 114 CGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIET 173
L I + +L + N ++ P G + R+
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNP-ELGSIDQVRY---------------------- 321
Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPG-HESDINAV 232
GH + +LS + D +T S + WDI G + FP H + I +
Sbjct: 322 --------GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373
Query: 233 TFFPNGWAFATGSDD 247
G F DD
Sbjct: 374 KTTSKGDLFTVSWDD 388
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 54 HLAKIYAMHWGSDSRNLVSASQDGKLIVWD 83
H AK+ + W D+ L + S D +IVW+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 44/247 (17%)
Query: 109 GSFVACGGLDNICSIYSLK--------TREGNVRVSRELPG-HTGYLSCCRFL--DDNQI 157
G ++ GG D + +Y L+ T + + R+ P H + ++ D
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 158 VTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAP--DMRTFVS-GACDASAKLWDIR 214
+SS D + +WD T Q A V S ++P V+ G +L D++
Sbjct: 116 TSSSFDKTLKVWDTNT-LQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 215 DGSCKQTFPGHESDINAVTFFPN-GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGI 273
GSC GH +I AV++ P + AT S D+ +L+D+R
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR----------------- 217
Query: 274 TSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWD 333
R+ L+ D N S E A H+ +V+ L T DG+ + T D
Sbjct: 218 ------RASGCLIT-LDQHNGK--KSQAVESAN--TAHNGKVNGLCFTSDGLHLLTVGTD 266
Query: 334 SFLRIWN 340
+ +R+WN
Sbjct: 267 NRMRLWN 273
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Query: 102 TCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
C+ + V G D ++ +EG++ + + + + + +N+ +T+S
Sbjct: 107 VCSLSFQDGVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAKVVSFSENKFLTAS 162
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQT 221
D + LW + + +F G DV+ D F+S + D KL D G +T
Sbjct: 163 ADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRT 220
Query: 222 FPGHESDINAVTFFPNGWAFATGSDDATCRLF 253
+ GHES + + PNG + G +D T R++
Sbjct: 221 YEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 132 NVRVSRELPG-HTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSL 190
N +V + G H + +DD ++ S D L D TG ++ GH V +
Sbjct: 172 NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
Query: 191 SLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATC 250
L P+ VS D + ++W +GS KQ I +V NG GS D
Sbjct: 232 KLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNG-DIIVGSSDNLV 289
Query: 251 RLFDIRADQELAMYSHDNIICG 272
R+F QE + ++ ++ I G
Sbjct: 290 RIF----SQEKSRWASEDEIKG 307
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 51 LRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
L+ H A ++ S S N ++AS D + +W + K + + + V A G
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFS-GIHNDVVRHLAVVDDG 196
Query: 110 SFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALW 169
F++C D + + T + V R GH ++ C + L + IV+ D + +W
Sbjct: 197 HFISCSN-DGLIKLVDXHTGD----VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW 251
Query: 170 DIETG 174
E G
Sbjct: 252 SKENG 256
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 242 ATGSDDATCRLFDIRADQEL--AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCN---V 296
A+ S D T RL+ + DQ L +Y+ + SV + LLL G D N +
Sbjct: 33 ASVSRDGTVRLWS-KDDQWLGTVVYTGQGFL---NSVCYDSEKELLLFGGKDTXINGVPL 88
Query: 297 WDSMKTERAGILAGHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
+ + + L GH V L +DG+ V +GSWD ++W
Sbjct: 89 FATSGEDPLYTLIGHQGNVCSLSF-QDGV-VISGSWDKTAKVWK 130
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 51/287 (17%)
Query: 51 LRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVW--DSYTTNKVHAIPLRSSWVMTCAYA 106
LRGH ++ + W L S S D K+I+W ++ T K H S V + +A
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 107 PS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDM 164
P G +ACG D S+ + T EG V + HT + C N + + +
Sbjct: 113 PHDYGLILACGSSDGAISLLTY-TGEGQWEVKKINNAHT--IGC------NAVSWAPAVV 163
Query: 165 SCALWDIETGQQCASFIGHTGDVMSLSLAPD-MRTFVSGACDASAKLW-DIRDGSCKQTF 222
+L D +GQ+ P+ ++ F SG CD KLW + DG K+
Sbjct: 164 PGSLIDHPSGQK-----------------PNYIKRFASGGCDNLIKLWKEEEDGQWKE-- 204
Query: 223 PGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSG 282
E + A + + A+A T + D + +++ D+ + + + S
Sbjct: 205 ---EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD------ASSNTWSP 255
Query: 283 RLLLAGYDDFNCNVWDSMKTERAGILA--GHDNRVSCLGVTEDGMAV 327
+LL FN VW + A ILA G DN+V+ + DG V
Sbjct: 256 KLL----HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWV 298
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 225 HESDINAVTFFPNGWAFATGSDDATCRLFDIRADQELA---MYSHDNIICGITSVAFSRS 281
HE I+ G AT S D + ++FD+R ++ + H+ + + + A
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV-AWAHPMY 70
Query: 282 GRLLLAGYDDFNCNVW--DSMKTERAGILAGHDNRVS--CLGVTEDGMAVATGSWDSFLR 337
G +L + D +W ++ E++ AGHD+ V+ C + G+ +A GS D +
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 338 I 338
+
Sbjct: 131 L 131
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 143 TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG 202
T L RF+ + T+ GD+ + ++ H ++ L P +S
Sbjct: 101 TAKLQMRRFI----LGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISS 154
Query: 203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
+ D K+W ++DGS +T GH + + + G + S D T RL++
Sbjct: 155 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 329
+ IT + F SG L++ D +W L GH V+ + + + G V +
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 195
Query: 330 GSWDSFLRIW 339
S D +R+W
Sbjct: 196 ASLDGTIRLW 205
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 75/201 (37%), Gaps = 34/201 (16%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI--------------- 93
RTL GH A + + RN++SAS DG + +W+ T +H
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
Query: 94 ---------PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG 144
+ +S + G +V G + + +++++ ++E +++ +
Sbjct: 232 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT---- 287
Query: 145 YLSCCRFLDD----NQIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTF 199
SC D N I + A WD+ + + F+ + G ++ F
Sbjct: 288 -CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALF 346
Query: 200 VSGACDASAKLWDIRDGSCKQ 220
VS D S KL I D ++
Sbjct: 347 VSSGFDTSIKLDIISDPESER 367
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 143 TGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSG 202
T L RF+ + T+ GD+ + ++ H ++ L P +S
Sbjct: 104 TAKLQMRRFI----LGTTEGDIKVLDSNFNLQREIDQ--AHVSEITKLKFFPSGEALISS 157
Query: 203 ACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFD 254
+ D K+W ++DGS +T GH + + + G + S D T RL++
Sbjct: 158 SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 270 ICGITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLGVTEDGMAVAT 329
+ IT + F SG L++ D +W L GH V+ + + + G V +
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 198
Query: 330 GSWDSFLRIW 339
S D +R+W
Sbjct: 199 ASLDGTIRLW 208
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 45/240 (18%)
Query: 49 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSYTTNKVHAI--------------- 93
RTL GH A + + RN++SAS DG + +W+ T +H
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
Query: 94 ---------PLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTG 144
+ +S + G +V G + + +++++ ++E +++ +
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT---- 290
Query: 145 YLSCCRFLDD----NQIVTSSGDMSCALWDIETGQ-QCASFIGHTGDVMSLSLAPDMRTF 199
SC D N I + A WD+ + + F+ + G ++ F
Sbjct: 291 -CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALF 349
Query: 200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFPNGWAFATGSDDATCRLFDIRADQ 259
VS D S KL I D ES+ A+ F F +DDA + + D+
Sbjct: 350 VSSGFDTSIKLDIISDP---------ESERPAIEF--ETPTFLVSNDDAVSQFCYVSDDE 398
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 52 RGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGS 110
+GH I ++ W D L+S+ +D +++W+ + ++ P R +W +AP
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 111 -FVACGGLDNICSIYSLK 127
AC DN + +L+
Sbjct: 319 DLFACASFDNKIEVQTLQ 336
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 116 GLDNICSIYSLKTREGNVRVSRELPGH-TGYLSCCRFLDDNQIVTSSG-DMSCALWDIET 173
G DN SI R N + GH G LS D ++ SSG D + LW+ E+
Sbjct: 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
Query: 174 GQQCASFIGHTGDVMSLSLAPD 195
+Q + F AP+
Sbjct: 295 AEQLSQFPARGNWCFKTKFAPE 316
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 26/215 (12%)
Query: 66 DSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVM----TCAYAPSGSFVACGGLDNIC 121
D +V+AS G + V+ + N+ + + W T +PS S C G+ +C
Sbjct: 103 DQERIVAASSTGCVTVFLHHPNNQ--TLSVNQQWTTAHYHTGPGSPSYSSAPCTGV--VC 158
Query: 122 SIYSLKTREGNVRVSRELPGH-----------TGYLSCCRFLDDNQIVTSSGDMSCALWD 170
+ + T + R++ H + L FL +I+T + +WD
Sbjct: 159 NNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWD 218
Query: 171 I-ETGQQCASFIGHTGDVMSLSLA---PDMRTFV-SGACDASAKLWDIRDGSCKQT-FPG 224
+ G + + + TGD + L P+ + V +G D +WD+R G+ +
Sbjct: 219 FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKA 278
Query: 225 HESDINAVTFFP-NGWAFATGSDDATCRLFDIRAD 258
HE+++ V F P N T S+D + +D D
Sbjct: 279 HEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 51 LRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSS 98
L+ H A+++ +H+ S+ +L + S+DG L WD+ T +P +SS
Sbjct: 276 LKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD-----VPEKSS 319
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 20/191 (10%)
Query: 134 RVSRELP---GHTGY---LSCCRFLDDNQIVTSSGDMSCALWDIETG-------QQCASF 180
RV + +P GHT ++ C +DN I + S D + +W+I G + +
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 181 IGHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTFPG--HESDINAVTFFPN 237
GHT V ++ P + +S CD +WD+ G+ T H I +V + +
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 238 GWAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY---DDFNC 294
G T D R+ + R +A + F G++L G+ +
Sbjct: 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV 247
Query: 295 NVWDSMKTERA 305
+WD+ E
Sbjct: 248 ALWDTKHLEEP 258
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 183 HTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFF--PNGWA 240
HTG V+ + + D + +CD +AK+WD+ Q H++ + + + PN
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143
Query: 241 FATGSDDATCRLFDIRADQELAM 263
TGS D T + +D R+ + +
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMV 166
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 273 ITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAGHDNRVSCLG--VTEDGMAVATG 330
+ V +S G + D +WD + + +A +A HD V + + V TG
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTG 147
Query: 331 SWDSFLRIWN 340
SWD L+ W+
Sbjct: 148 SWDKTLKFWD 157
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 176 QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VT 233
Q H G V + APD V+ D +A +W ++ + K T + A V
Sbjct: 44 QVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103
Query: 234 FFPNGWAFATGSDDATCRL--FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD 291
+ PN FA GS + F+ D + + I + S+ + + LL AG D
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 292 FNCNVWDSMKTE 303
F C ++ + E
Sbjct: 164 FKCRIFSAYIKE 175
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 176 QCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLWDIRDGSCKQTFPGHESDINA--VT 233
Q H G V + APD V+ D +A +W ++ + K T + A V
Sbjct: 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103
Query: 234 FFPNGWAFATGSDDATCRL--FDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGYDD 291
+ PN FA GS + F+ D + + I + S+ + + LL AG D
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 292 FNCNVWDSMKTE 303
F C ++ + E
Sbjct: 164 FKCRIFSAYIKE 175
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 151 FLDDNQIVTSSGDMSCALWDIETGQQ--CASFIGHTGD--VMSLSLAPDMRTFVSGACDA 206
++ + I+ +S + LW+I + F + D V +LS+ D VSG D
Sbjct: 102 WVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF 161
Query: 207 SAKLWDIRDGSCKQTFPGHESDINAVTFFP-NGWAFATGSDDATCRLFDIRADQ 259
S K+WD+ + +++ H S++N V P F + +D L+D R +
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 245 SDDATCRLFDIRADQEL-----AMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVWDS 299
SD L++I + L A Y HD+I+ +++ G ++G DF+ VWD
Sbjct: 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIV---KTLSVFSDGTQAVSGGKDFSVKVWDL 168
Query: 300 MKTERAGILAGHDNRVSCL 318
+ H + V+C+
Sbjct: 169 SQKAVLKSYNAHSSEVNCV 187
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVWDSMKTERAGILAG------HDNRVSCLGVTEDGM 325
G+T VA+ +L+A D +W+ + E+ +L HD+ V L V DG
Sbjct: 96 GVTDVAWVSEKGILVAS-DSGAVELWEIL--EKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 326 AVATGSWDSFLRIWN 340
+G D +++W+
Sbjct: 153 QAVSGGKDFSVKVWD 167
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTF---PGHESDI 229
G++ + H V ++L P F++ A D + K+WD+R K +F H +
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 230 NAVTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYSHDN----IICGITSVAFSRSGRL 284
NA F P+G T + R++ D L + H + + I + R +
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC 317
++ Y D N + + G+ ++ C
Sbjct: 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 392
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 132 NVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVM 188
N+R+ ++ H CC + + T+S D + +WD+ + ASF + H V
Sbjct: 245 NLRMHKKKVTHVALNPCCDWF----LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300
Query: 189 SLSLAPD 195
+ +PD
Sbjct: 301 AACFSPD 307
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTF---PGHESDI 229
G++ + H V ++L P F++ A D + K+WD+R K +F H +
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 230 NAVTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYSHDN----IICGITSVAFSRSGRL 284
NA F P+G T + R++ D L + H + + I + R +
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC 317
++ Y D N + + G+ ++ C
Sbjct: 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 392
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 132 NVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVM 188
N+R+ ++ H CC + + T+S D + +WD+ + ASF + H V
Sbjct: 245 NLRMHKKKVTHVALNPCCDWF----LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 300
Query: 189 SLSLAPD 195
+ +PD
Sbjct: 301 AACFSPD 307
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 174 GQQCASFIGHTGDVMSLSLAPDMRTFVSGA-CDASAKLWDIRDGSCKQTF---PGHESDI 229
G++ + H V ++L P F++ A D + K+WD+R K +F H +
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 230 NAVTFFPNGWAFATGSDDATCRLFDIRA-DQELAMYSHDN----IICGITSVAFSRSGRL 284
NA F P+G T + R++ D L + H + + I + R +
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 360
Query: 285 LLAGYDDFNCNVWDSMKTERAGILAGHDNRVSC 317
++ Y D N + + G+ ++ C
Sbjct: 361 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 393
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 132 NVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVM 188
N+R+ ++ H CC + + T+S D + +WD+ + ASF + H V
Sbjct: 246 NLRMHKKKVTHVALNPCCDWF----LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN 301
Query: 189 SLSLAPD 195
+ +PD
Sbjct: 302 AACFSPD 308
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 38/209 (18%)
Query: 51 LRGHLAKIYAMHWGSDSRNL--VSASQDGKLIVWDS-----YTTNKVHAIPLRSSWVMTC 103
+ GH +I A H SR + ++ DG ++ + +++ H + S+V
Sbjct: 156 VSGHSQRINACHL-KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH--KQGSFVRDV 212
Query: 104 AYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSG 162
++P SG FV G D S + K+ E + + G + +LD + T
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 163 DMSCALWDIET---------------GQQCASFIGHTGDVMSLSLAPDMRTFVSGACDAS 207
D + +WD+ T QQ G ++SLSL D +
Sbjct: 273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL------------DGT 320
Query: 208 AKLWDIRDGSCKQTFPGHESDINAVTFFP 236
+++ +T GH I A+T P
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTVNP 349
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 18/190 (9%)
Query: 134 RVSRELP---GHTGYLSCCRFL--DDNQIVTSSGDMSCALWDIETG-------QQCASFI 181
RV + +P GHT + + +DN I + S D + +W+I G + +
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 182 GHTGDVMSLSLAPDMR-TFVSGACDASAKLWDIRDGSCKQTFPG--HESDINAVTFFPNG 238
GHT V ++ P + +S D +WD+ G+ T H I +V + +G
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 239 WAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSRSGRLLLAGY---DDFNCN 295
T D R+ + R +A + F G++L G+ +
Sbjct: 189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVA 248
Query: 296 VWDSMKTERA 305
+WD+ E
Sbjct: 249 LWDTKHLEEP 258
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 28/157 (17%)
Query: 96 RSSWVMTCAYAP-SGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDD 154
+ S+V ++P SG FV G D S + K+ E + + G + +LD
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 155 NQIVTSSGDMSCALWDIET---------------GQQCASFIGHTGDVMSLSLAPDMRTF 199
+ T D + +WD+ T QQ G ++SLSL
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL------- 317
Query: 200 VSGACDASAKLWDIRDGSCKQTFPGHESDINAVTFFP 236
D + +++ +T GH I A+T P
Sbjct: 318 -----DGTLNFYELGHDEVLKTISGHNKGITALTVNP 349
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 32/207 (15%)
Query: 100 VMTCAYAP-SGSFVACGGLDNICSIYSL-KTREGNVRVSRELPGHTGYLSCCRF----LD 153
V C + P S FV G + L + + G++++ RE+ + C F L
Sbjct: 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE-KAKPIKCGTFGATSLQ 79
Query: 154 DNQIVTSSGDMSCALWDIETGQQCA-SFIGHTGDV---------MSLSLAPDMRTFVSGA 203
+ T + +W++E + S GH + AP++ V+G+
Sbjct: 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI---VTGS 136
Query: 204 CDASAKLWDIR--DGSCKQTFP--GHESDINAVTFFPNGW-----AFATGSDDATCRLFD 254
D + K+WD R D P G F N + G D+ +LFD
Sbjct: 137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFD 196
Query: 255 IRADQELAMYSHDNIICGITSVAFSRS 281
+R +A+ NI G+ S+ F R
Sbjct: 197 LR---NMALRWETNIKNGVCSLEFDRK 220
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 242 ATGSDDATCRLFDIRADQEL----AMYSHDNIICGITSVAFSRSGRLLLAGYDD--FNC- 294
ATG ++ T ++ ++ + L + +S N I SV FS G LL +D F C
Sbjct: 211 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 270
Query: 295 NVWDSMKTERAGILA-------------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
++++ ER G L+ H + V L + G + + WD LR W+
Sbjct: 271 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 329
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 56/184 (30%), Gaps = 52/184 (28%)
Query: 85 YTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHT 143
Y H++ S+ + + ++P GS +A N +L E R+ S +P H+
Sbjct: 231 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 290
Query: 144 GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA 203
S F H+ VMSLS T S
Sbjct: 291 SQASLGEF------------------------------AHSSWVMSLSFNDSGETLCSAG 320
Query: 204 CDASAKLWDIRDGSCKQTFPGH------ESDINA---------------VTFFPNGWAFA 242
D + WD++ T H E DI A V F GW
Sbjct: 321 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 380
Query: 243 TGSD 246
G+D
Sbjct: 381 MGAD 384
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 242 ATGSDDATCRLFDIRADQEL----AMYSHDNIICGITSVAFSRSGRLLLAGYDD--FNC- 294
ATG ++ T ++ ++ + L + +S N I SV FS G LL +D F C
Sbjct: 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260
Query: 295 NVWDSMKTERAGILA-------------GHDNRVSCLGVTEDGMAVATGSWDSFLRIWN 340
++++ ER G L+ H + V L + G + + WD LR W+
Sbjct: 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 56/184 (30%), Gaps = 52/184 (28%)
Query: 85 YTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSIYSLKTREGNVRV-SRELPGHT 143
Y H++ S+ + + ++P GS +A N +L E R+ S +P H+
Sbjct: 221 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280
Query: 144 GYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGA 203
S F H+ VMSLS T S
Sbjct: 281 SQASLGEF------------------------------AHSSWVMSLSFNDSGETLCSAG 310
Query: 204 CDASAKLWDIRDGSCKQTFPGH------ESDINA---------------VTFFPNGWAFA 242
D + WD++ T H E DI A V F GW
Sbjct: 311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370
Query: 243 TGSD 246
G+D
Sbjct: 371 MGAD 374
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 50/266 (18%)
Query: 50 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDS----YTTNKVHAIPLRSSWVMTC 103
TL GH ++ + W L S S DGK+++W ++ VHA+ S+ V +
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSV 107
Query: 104 AYAPS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
+AP G + D S+ K G T + +D + I +S
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSVVEFKEN-----------GTTSPI----IIDAHAIGVNS 152
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW----DIRDGS 217
+ A + E G+ H G + R FV+G D K+W D +
Sbjct: 153 ASWAPATIE-EDGE-------HNG-------TKESRKFVTGGADNLVKIWKYNSDAQTYV 197
Query: 218 CKQTFPGHESDINAVTFFPNGWA---FATGSDDATCRLFDIRADQ---ELAMYSHDNIIC 271
+ T GH + V + P A+ S D TC ++ +Q + + +
Sbjct: 198 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 257
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVW 297
+ ++S SG +L D +W
Sbjct: 258 VLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 50/266 (18%)
Query: 50 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDS----YTTNKVHAIPLRSSWVMTC 103
TL GH ++ + W L S S DGK+++W ++ VHA+ S+ V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSV 105
Query: 104 AYAPS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
+AP G + D S+ K G T + +D + I +S
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKEN-----------GTTSPI----IIDAHAIGVNS 150
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW----DIRDGS 217
+ A + E G+ H G + R FV+G D K+W D +
Sbjct: 151 ASWAPATIE-EDGE-------HNG-------TKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 218 CKQTFPGHESDINAVTFFPNGWA---FATGSDDATCRLFDIRADQ---ELAMYSHDNIIC 271
+ T GH + V + P A+ S D TC ++ +Q + + +
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVW 297
+ ++S SG +L D +W
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 102 TCAYA----PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF--LDDN 155
TCA+ S +A G I I + T ++ + GH ++ +F D N
Sbjct: 69 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHGNAINELKFHPRDPN 124
Query: 156 QIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
+++ S D + LW+I+T A F GH +V+S +S D S KLW
Sbjct: 125 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 184
Query: 213 I 213
I
Sbjct: 185 I 185
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 50/266 (18%)
Query: 50 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDS----YTTNKVHAIPLRSSWVMTC 103
TL GH ++ + W L S S DGK+++W ++ VHA+ S+ V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV--HSASVNSV 105
Query: 104 AYAPS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
+AP G + D S+ K G T + +D + I +S
Sbjct: 106 QWAPHEYGPMLLVASSDGKVSVVEFKEN-----------GTTSPI----IIDAHAIGVNS 150
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW----DIRDGS 217
+ A + E G+ H G + R FV+G D K+W D +
Sbjct: 151 ASWAPATIE-EDGE-------HNG-------TKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 218 CKQTFPGHESDINAVTFFPNGWA---FATGSDDATCRLFDIRADQ---ELAMYSHDNIIC 271
+ T GH + V + P A+ S D TC ++ +Q + + +
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255
Query: 272 GITSVAFSRSGRLLLAGYDDFNCNVW 297
+ ++S SG +L D +W
Sbjct: 256 VLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 102 TCAYA----PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF--LDDN 155
TCA+ S +A G I I + T ++ + GH ++ +F D N
Sbjct: 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHGNAINELKFHPRDPN 129
Query: 156 QIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
+++ S D + LW+I+T A F GH +V+S +S D S KLW
Sbjct: 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
Query: 213 I 213
I
Sbjct: 190 I 190
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 102 TCAYA----PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF--LDDN 155
TCA+ S +A G I I + T ++ + GH ++ +F D N
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHGNAINELKFHPRDPN 128
Query: 156 QIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
+++ S D + LW+I+T A F GH +V+S +S D S KLW
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Query: 213 I 213
I
Sbjct: 189 I 189
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 102 TCAYA----PSGSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRF--LDDN 155
TCA+ S +A G I I + T ++ + GH ++ +F D N
Sbjct: 73 TCAWTYDSNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHGNAINELKFHPRDPN 128
Query: 156 QIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPDMRTFVSGACDASAKLWD 212
+++ S D + LW+I+T A F GH +V+S +S D S KLW
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Query: 213 I 213
I
Sbjct: 189 I 189
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 141 GHTGYLSCCRF--LDDNQIVTSSGDMSCALWDIETGQQCASF---IGHTGDVMSLSLAPD 195
GH ++ +F D N +++ S D + LW+I+T A F GH +V+S
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 196 MRTFVSGACDASAKLWDI 213
+S D S KLW I
Sbjct: 209 GEKIMSCGMDHSLKLWRI 226
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 47/216 (21%)
Query: 50 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDS----YTTNKVHAIPLRSSWVMTC 103
TL GH ++ + W L S S DGK+++W ++ VHA+ S+ V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSV 105
Query: 104 AYAPS--GSFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSS 161
+AP G + D S+ K G T + +D + I +S
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKEN-----------GTTSPI----IIDAHAIGVNS 150
Query: 162 GDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW----DIRDGS 217
+ A + E G+ H G + R FV+G D K+W D +
Sbjct: 151 ASWAPATIE-EDGE-------HNG-------TKESRKFVTGGADNLVKIWKYNSDAQTYV 195
Query: 218 CKQTFPGHESDINAVTFFPNGWA---FATGSDDATC 250
+ T GH + V + P A+ S D TC
Sbjct: 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
>pdb|1ZUW|A Chain A, Crystal Structure Of B.Subtilis Glutamate Racemase (Race)
With D-Glu
pdb|1ZUW|B Chain B, Crystal Structure Of B.Subtilis Glutamate Racemase (Race)
With D-Glu
pdb|1ZUW|C Chain C, Crystal Structure Of B.Subtilis Glutamate Racemase (Race)
With D-Glu
Length = 272
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 150 RFLDDNQIVTSSGDMSCALWDIETGQQCASFIGHTGDVMSLSLAPDMRTFVSGACDASAK 209
R++ ++ + SSGD ET ++ ++ + + G + +APD + +GA D AK
Sbjct: 197 RYMGEHVNIISSGD--------ETAREVSTILSYKGLLNQSPIAPDHQFLTTGARDQFAK 248
Query: 210 LWD 212
+ D
Sbjct: 249 IAD 251
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 201 SGACDASAKLWDIRDGSCKQTFPG---HESDINAVTFFP 236
+ + DA+ KLWD+R+ K ++ HE +NA F P
Sbjct: 221 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 225 HESDINAVTFFPN-GWAFATGSDDATCRLFDIR 256
H++ + F P W AT S DAT +L+D+R
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 201 SGACDASAKLWDIRDGSCKQTFPG---HESDINAVTFFP 236
+ + DA+ KLWD+R+ K ++ HE +NA F P
Sbjct: 222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 243 TGSDDATCRLFDIRADQELAM-----YSHDNIICGITSVAFSRSGRLLLAGYDDFNCNVW 297
SD L+++ ++ L + Y HD+I+ ++V+ SG ++G D VW
Sbjct: 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIV---STVSVLSSGTQAVSGSKDICIKVW 154
Query: 298 DSMKTERAGILAGHDNRVSCLGVTEDGMAV-ATGSWDSFLRIWN 340
D + H +V+C+ + +V + S D+ + +W+
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 112/310 (36%), Gaps = 62/310 (20%)
Query: 12 ETLKNAIRD---ARKAACDTSLVTATGNMEPIGRIQMRTRR---TLRGHLAKIYAMHWGS 65
E + +A+ D R A C + I ++ T + TL GH ++ + W
Sbjct: 10 EXIHDAVXDYYGKRXATCSSDKTIK------IFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 DSRN--LVSASQDGKLIVWDS----YTTNKVHAIPLRSSWVMTCAYAPS--GSFVACGGL 117
L S S DGK+ +W ++ VHA+ S+ V + +AP G +
Sbjct: 64 PKFGTILASCSYDGKVXIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPXLLVASS 121
Query: 118 DNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIVTSSGDMSCALWDIETGQQC 177
D S+ K G T + +D + I +S + A + E G+
Sbjct: 122 DGKVSVVEFKEN-----------GTTSPI----IIDAHAIGVNSASWAPATIE-EDGE-- 163
Query: 178 ASFIGHTGDVMSLSLAPDMRTFVSGACDASAKLW----DIRDGSCKQTFPGHESDINAVT 233
H G + R FV+G D K+W D + + T GH + V
Sbjct: 164 -----HNG-------TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211
Query: 234 FFPNGW---AFATGSDDATCRLFDIRADQ---ELAMYSHDNIICGITSVAFSRSGRLLLA 287
+ P A+ S D TC ++ +Q + + + + ++S SG +L
Sbjct: 212 WSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 288 GYDDFNCNVW 297
D +W
Sbjct: 272 SGGDNKVTLW 281
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 243 TGSDDATCRLFDIRADQELAMY-SHDNIICGITSVAFSRSGRLL 285
TG D + RL D++A Q+ A+Y DN G SV + G++L
Sbjct: 823 TGKVDVSQRLTDLKAGQKYALYVGVDNRSTGDASVTVTSGGKVL 866
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,324,189
Number of Sequences: 62578
Number of extensions: 413852
Number of successful extensions: 2128
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 441
length of query: 340
length of database: 14,973,337
effective HSP length: 99
effective length of query: 241
effective length of database: 8,778,115
effective search space: 2115525715
effective search space used: 2115525715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)