BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15424
(153 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242008648|ref|XP_002425114.1| Thyroid hormone receptor-associated protein, putative [Pediculus
humanus corporis]
gi|212508788|gb|EEB12376.1| Thyroid hormone receptor-associated protein, putative [Pediculus
humanus corporis]
Length = 2117
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 74/113 (65%), Positives = 86/113 (76%), Gaps = 9/113 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRKLVHG+ TG++P EP EDP+L+S+++CLA DILCVWRRV T S
Sbjct: 3 TDLCGIKWRKLVHGE---TGFAP--EPSEDPILSSFSRCLAADILCVWRRVATAVPPSSD 57
Query: 101 GGGGGLFDSIGLPQVTSV--PPLSLQAAKELWIFWYGEEPDLSSIVTPELFSS 151
GG LFD+I L Q V PPLSL AAKELWIFWYGEEPDLS +V+PEL +S
Sbjct: 58 INGG-LFDNIAL-QTAPVKHPPLSLHAAKELWIFWYGEEPDLSGLVSPELLAS 108
>gi|357625948|gb|EHJ76217.1| hypothetical protein KGM_17578 [Danaus plexippus]
Length = 1884
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 87/138 (63%), Gaps = 15/138 (10%)
Query: 16 KVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYS--PGSEPLEDPVL 73
K R + + ER R T+L GIKWRKLV G+++G G G+ PL DPV+
Sbjct: 37 KRRSDHRKHCTVCDDIER-ARRPSMTELYGIKWRKLVWGETSGVGAEGEEGAAPLADPVI 95
Query: 74 ASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFW 133
+SYA+CLAGDILCVWRRV PQ L IGL + PPLSL+A+KELWIFW
Sbjct: 96 SSYARCLAGDILCVWRRVPAPQ---------PLDIDIGL---AAPPPLSLRASKELWIFW 143
Query: 134 YGEEPDLSSIVTPELFSS 151
YGEEPDL+ +V PEL +S
Sbjct: 144 YGEEPDLNGLVAPELITS 161
>gi|350400114|ref|XP_003485744.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like isoform 1 [Bombus impatiens]
Length = 1938
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133
>gi|328790302|ref|XP_393643.4| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Apis mellifera]
Length = 1994
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133
>gi|350400120|ref|XP_003485745.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like isoform 2 [Bombus impatiens]
Length = 1999
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133
>gi|340717955|ref|XP_003397439.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like isoform 1 [Bombus terrestris]
Length = 1938
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133
>gi|380019945|ref|XP_003693861.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Apis florea]
Length = 1995
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133
>gi|340717957|ref|XP_003397440.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like isoform 2 [Bombus terrestris]
Length = 1999
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 84/114 (73%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAGDF---GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPATSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLVSPELIA 133
>gi|383854209|ref|XP_003702614.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Megachile rotundata]
Length = 1994
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 86/114 (75%), Gaps = 8/114 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG-TPQNGG- 98
TDLCGIKW+KLV G+ AG G+ G PLEDPVL+S+++CLAGDILCVWRRV TP G
Sbjct: 24 TDLCGIKWKKLVWGEVAG-GF--GGTPLEDPVLSSFSRCLAGDILCVWRRVAATPSTSGP 80
Query: 99 --SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ G G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +++PEL +
Sbjct: 81 ATASATGAGIFD-LGIAPSPAPPPLSLTAAKELWIFWYGEEPDLSGLLSPELIA 133
>gi|170044775|ref|XP_001850010.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167867791|gb|EDS31174.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 134
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 77/122 (63%), Gaps = 13/122 (10%)
Query: 36 ERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQ 95
R TDLCGIKWRKL G+ S PL+DPVL SY+KCL DILCVWRRV P+
Sbjct: 15 HRKQITDLCGIKWRKLAQGERPNAS----SNPLDDPVLRSYSKCLEVDILCVWRRVAAPK 70
Query: 96 NGGSGGGGGGLFDSIGLP-QVT--SV--PPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+F+ + +P VT SV PPLSL AAKELWIFWYGEEPDL+ +V PEL
Sbjct: 71 ---PAEQDPNVFE-MSIPGPVTGGSVIHPPLSLTAAKELWIFWYGEEPDLTDLVDPELLK 126
Query: 151 SG 152
S
Sbjct: 127 SA 128
>gi|195375016|ref|XP_002046299.1| GJ12583 [Drosophila virilis]
gi|194153457|gb|EDW68641.1| GJ12583 [Drosophila virilis]
Length = 2860
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCMQADMLCVWRRVQSTKQDNTD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALNFEITTSTTVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|195441007|ref|XP_002068324.1| GK13446 [Drosophila willistoni]
gi|194164409|gb|EDW79310.1| GK13446 [Drosophila willistoni]
Length = 2957
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCMQADMLCVWRRVQSTKQDNTD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALNFEITTSTKVHPPLSLAAAKELWIFWYGEEPDLSDLVDAELL 125
>gi|195135539|ref|XP_002012190.1| GI16834 [Drosophila mojavensis]
gi|193918454|gb|EDW17321.1| GI16834 [Drosophila mojavensis]
Length = 2687
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL+DP+L SY++C+ D+LCVWRRV + + S
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLDDPILRSYSRCMQADMLCVWRRVQSTKQDNSD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V +L
Sbjct: 80 P------NALNFEITTSTTVHPPLSLAAAKELWIFWYGEEPDLSELVDADLL 125
>gi|195495715|ref|XP_002095384.1| GE22364 [Drosophila yakuba]
gi|194181485|gb|EDW95096.1| GE22364 [Drosophila yakuba]
Length = 2618
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDNAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALNFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|195012105|ref|XP_001983477.1| GH15559 [Drosophila grimshawi]
gi|193896959|gb|EDV95825.1| GH15559 [Drosophila grimshawi]
Length = 2934
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCMQADMLCVWRRVQSTKQDNTD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALNFEITTSTTVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|158295836|ref|XP_316472.4| AGAP006436-PA [Anopheles gambiae str. PEST]
gi|157016223|gb|EAA11333.5| AGAP006436-PA [Anopheles gambiae str. PEST]
Length = 2679
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 65/118 (55%), Positives = 77/118 (65%), Gaps = 9/118 (7%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRV-GTPQNGGS 99
TDLCGI+WR+LV G+ + +PL+DPV+ SY+KCLA DILCVWRRV
Sbjct: 8 TDLCGIRWRQLVLGERP----NAAGDPLDDPVVRSYSKCLAVDILCVWRRVVAPKPKPKP 63
Query: 100 GGGGGGLFD-SI-GLPQVTSV--PPLSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE 153
+FD SI G SV PPLSL AAKELWIFWYGEEPDL+ +V PEL +S E
Sbjct: 64 DPDPSSMFDMSIPGTGNSGSVVHPPLSLTAAKELWIFWYGEEPDLTDLVAPELLNSSE 121
>gi|194875279|ref|XP_001973568.1| GG13266 [Drosophila erecta]
gi|190655351|gb|EDV52594.1| GG13266 [Drosophila erecta]
Length = 2779
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDNAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|195348423|ref|XP_002040748.1| GM22170 [Drosophila sechellia]
gi|194122258|gb|EDW44301.1| GM22170 [Drosophila sechellia]
Length = 2761
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDNAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|195592018|ref|XP_002085733.1| GD12147 [Drosophila simulans]
gi|194197742|gb|EDX11318.1| GD12147 [Drosophila simulans]
Length = 2731
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDNAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|195162909|ref|XP_002022296.1| GL26215 [Drosophila persimilis]
gi|194104257|gb|EDW26300.1| GL26215 [Drosophila persimilis]
Length = 2374
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 17/114 (14%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGT--PQNGG 98
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + P N
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSHKPDNTD 79
Query: 99 SGGGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P--------NALTFEITTSTKVHPPLSLAAAKELWIFWYGEEPDLSDLVDAELL 125
>gi|198464423|ref|XP_001353214.2| GA22138 [Drosophila pseudoobscura pseudoobscura]
gi|198149711|gb|EAL30716.2| GA22138 [Drosophila pseudoobscura pseudoobscura]
Length = 2805
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 17/114 (14%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGT--PQNGG 98
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + P N
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSHKPDNTD 79
Query: 99 SGGGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P--------NALTFEITTSTKVHPPLSLAAAKELWIFWYGEEPDLSDLVDAELL 125
>gi|161085371|ref|NP_730591.2| skuld, isoform E [Drosophila melanogaster]
gi|158028596|gb|AAN12150.2| skuld, isoform E [Drosophila melanogaster]
Length = 2768
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|17864210|ref|NP_524653.1| skuld, isoform D [Drosophila melanogaster]
gi|24667811|ref|NP_730590.1| skuld, isoform C [Drosophila melanogaster]
gi|74876666|sp|Q7KTX8.1|MED13_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
13; AltName: Full=Mediator complex subunit 13; AltName:
Full=Mediator complex subunit Skuld; AltName:
Full=Protein blind spot; AltName: Full=Protein poils aux
pattes; AltName: Full=dTRAP240
gi|7230590|gb|AAF43021.1|AF227214_1 Pap/DTRAP240 [Drosophila melanogaster]
gi|12060982|gb|AAG48327.1|AF324425_1 transcriptional coactivator blind spot [Drosophila melanogaster]
gi|7109237|gb|AAF36691.1| TRAP240 [Drosophila melanogaster]
gi|7239301|gb|AAF43172.1| jlkjlkj [Drosophila melanogaster]
gi|23094199|gb|AAN12148.1| skuld, isoform C [Drosophila melanogaster]
gi|23094200|gb|AAN12149.1| skuld, isoform D [Drosophila melanogaster]
gi|317453668|gb|ADV19042.1| LD48112p [Drosophila melanogaster]
Length = 2618
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|442633817|ref|NP_001262134.1| skuld, isoform F [Drosophila melanogaster]
gi|440216102|gb|AGB94827.1| skuld, isoform F [Drosophila melanogaster]
Length = 2601
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>gi|189240457|ref|XP_973676.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
Length = 2011
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 75/128 (58%), Gaps = 21/128 (16%)
Query: 29 EKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGS--------EPLEDPVLASYAKCL 80
K + E G T+L GIKWRKLV+ + G G + G EPLEDPVL SYA+CL
Sbjct: 35 NKLDYFFENG--TELSGIKWRKLVYCELGGGGAASGHCSGGGGGGEPLEDPVLRSYARCL 92
Query: 81 AGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDL 140
A DILCVWRRV TP+ +F+ P LSL +KELWIFWYGEEPDL
Sbjct: 93 AADILCVWRRVSTPR-------STDMFEPGPPPPPP----LSLSTSKELWIFWYGEEPDL 141
Query: 141 SSIVTPEL 148
++ PEL
Sbjct: 142 GVLIAPEL 149
>gi|270011426|gb|EFA07874.1| hypothetical protein TcasGA2_TC005448 [Tribolium castaneum]
Length = 130
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 77/124 (62%), Gaps = 19/124 (15%)
Query: 38 GGDTDLCGIKWRKLVHGDSAGTGYSPGS--------EPLEDPVLASYAKCLAGDILCVWR 89
G T+L GIKWRKLV+ + G G + G EPLEDPVL SYA+CLA DILCVWR
Sbjct: 2 GEKTELSGIKWRKLVYCELGGGGAASGHCSGGGGGGEPLEDPVLRSYARCLAADILCVWR 61
Query: 90 RVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
RV TP++ +F+ PPLSL +KELWIFWYGEEPDL ++ PEL
Sbjct: 62 RVSTPRS-------TDMFEP----GPPPPPPLSLSTSKELWIFWYGEEPDLGVLIAPELN 110
Query: 150 SSGE 153
+ G+
Sbjct: 111 TPGK 114
>gi|194749105|ref|XP_001956980.1| GF10192 [Drosophila ananassae]
gi|190624262|gb|EDV39786.1| GF10192 [Drosophila ananassae]
Length = 2728
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V + + S+PL+DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVMEERP----NALSDPLKDPILRSYSRCIQADMLCVWRRVQSTKQDNTD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V +L
Sbjct: 80 P------NALTYEITTSTKIHPPLSLAAAKELWIFWYGEEPDLSELVDADLL 125
>gi|328720163|ref|XP_001945689.2| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Acyrthosiphon pisum]
Length = 2121
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/120 (45%), Positives = 65/120 (54%), Gaps = 11/120 (9%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEP-----------LEDPVLASYAKCLAGDILCVWR 89
TDLCGIKWRK VH G LEDPVL+SY +CL D+L VWR
Sbjct: 24 TDLCGIKWRKFVHCSPGPEGPPDWGGGPGGGTNACGSVLEDPVLSSYTRCLTHDMLAVWR 83
Query: 90 RVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
RV P L + P P LSL+A+KELWIFWYGEEPDL+ +V+P+L
Sbjct: 84 RVSLPPANSQQTSLDPLVPAPPTPIPALPPALSLKASKELWIFWYGEEPDLTGLVSPQLL 143
>gi|427788313|gb|JAA59608.1| Putative thyroid hormone receptor-associated protein complex
subunit [Rhipicephalus pulchellus]
Length = 2441
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 63/109 (57%), Gaps = 32/109 (29%)
Query: 42 DLCGIKWRKLV--HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGS 99
DLCG+KWR+L H A G G+EPL +PVL S+AKCLA D+LCVWRRV P++
Sbjct: 25 DLCGLKWRRLSTEHSSPAVGG---GAEPLSEPVLWSFAKCLAADLLCVWRRVARPEH--- 78
Query: 100 GGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
Q +ELW+FWYGEEPDLS +V+PEL
Sbjct: 79 ------------------------QHRRELWLFWYGEEPDLSGLVSPEL 103
>gi|307209243|gb|EFN86350.1| Mediator of RNA polymerase II transcription subunit 13
[Harpegnathos saltator]
Length = 2020
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 76/112 (67%), Gaps = 6/112 (5%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
T LCGIKWRKLV G+ AG G+ G PLEDPVL+S+++CLAGDIL T +
Sbjct: 1 TSLCGIKWRKLVWGEVAG-GF--GGTPLEDPVLSSFSRCLAGDILMATETTKTAAAAAAA 57
Query: 101 GGGG--GLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
G+FD +G+ + PPLSL AAKELWIFWYGEEPDLS +V+PEL +
Sbjct: 58 ASAPGAGIFD-LGIAPSPAPPPLSLNAAKELWIFWYGEEPDLSGLVSPELIA 108
>gi|321460432|gb|EFX71474.1| hypothetical protein DAPPUDRAFT_60138 [Daphnia pulex]
Length = 2118
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 60/125 (48%), Positives = 71/125 (56%), Gaps = 20/125 (16%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSP---GSEP---LEDPVLASYAKCLAGDILCVWRRVGTP 94
TDLCGI+WRKL GYSP G P L DPVL SY +CL+ DILCVWRR+ +
Sbjct: 24 TDLCGIRWRKLT-----SEGYSPQPGGGGPWDYLNDPVLLSYWRCLSNDILCVWRRIPSA 78
Query: 95 QNGGSGGGGGGLFDSI--GLP------QVTSVPPLSLQAAKELWIFWYGE-EPDLSSIVT 145
+ S GG S G P Q S +L AKELWIFWYG+ PDLSS+V
Sbjct: 79 SSASSPGGSSAFPPSFPSGFPNPQSSTQQGSNGLSTLSGAKELWIFWYGDTSPDLSSLVV 138
Query: 146 PELFS 150
PE+ +
Sbjct: 139 PEILN 143
>gi|241713108|ref|XP_002413479.1| hypothetical protein IscW_ISCW022895 [Ixodes scapularis]
gi|215507293|gb|EEC16787.1| hypothetical protein IscW_ISCW022895 [Ixodes scapularis]
Length = 118
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 36/120 (30%)
Query: 38 GGDTDLCGIKWRKL---------VHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVW 88
DLCG+KWR+L G G ++PL +PVL+S+AKCLA D+LCVW
Sbjct: 19 SSTADLCGLKWRRLSSEQQGPSLGGGGPHRGGGGVAADPLSEPVLSSFAKCLAADLLCVW 78
Query: 89 RRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
RRV P+ L +ELW+FWYGEEPDL+ +V+PEL
Sbjct: 79 RRVARPE---------------------------LPHRRELWVFWYGEEPDLAGLVSPEL 111
>gi|443711692|gb|ELU05357.1| hypothetical protein CAPTEDRAFT_103103 [Capitella teleta]
Length = 1991
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 29/109 (26%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDL GIKWRKL T + +PL+DPVL S+ +C+ DILC WRRV
Sbjct: 24 TDLTGIKWRKL-------TASAFPVDPLDDPVLVSFTRCMQSDILCAWRRV--------- 67
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEP-DLSSIVTPEL 148
P+ P + L KELWIFWYG+EP +L S+++ +L
Sbjct: 68 ------------PRNNPGPLVELMCTKELWIFWYGDEPINLRSLLSTDL 104
>gi|260820742|ref|XP_002605693.1| hypothetical protein BRAFLDRAFT_218537 [Branchiostoma floridae]
gi|229291028|gb|EEN61703.1| hypothetical protein BRAFLDRAFT_218537 [Branchiostoma floridae]
Length = 206
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 55/108 (50%), Gaps = 42/108 (38%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDL GIKWR+L AG G PLEDP+L+S+AKCLA D+ CVWR+
Sbjct: 24 TDLTGIKWRRLRAPCPAGVG------PLEDPILSSFAKCLAADVFCVWRQ---------- 67
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFWYG++PDL+ ++ PEL
Sbjct: 68 --------------------------RELWIFWYGDDPDLTDVLHPEL 89
>gi|260820744|ref|XP_002605694.1| hypothetical protein BRAFLDRAFT_218471 [Branchiostoma floridae]
gi|229291029|gb|EEN61704.1| hypothetical protein BRAFLDRAFT_218471 [Branchiostoma floridae]
Length = 208
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 55/108 (50%), Gaps = 42/108 (38%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDL GIKWR+L AG G PLEDP+L+S+AKCLA D+ CVWR+
Sbjct: 24 TDLTGIKWRRLRAPCPAGVG------PLEDPILSSFAKCLAADVFCVWRQ---------- 67
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFWYG++PDL+ ++ PEL
Sbjct: 68 --------------------------RELWIFWYGDDPDLTDVLHPEL 89
>gi|405976314|gb|EKC40826.1| Mediator of RNA polymerase II transcription subunit 13 [Crassostrea
gigas]
Length = 2015
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 47/109 (43%), Positives = 62/109 (56%), Gaps = 24/109 (22%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
T++ GIKWRKL SA Y+ + LEDPVL SY+KC+ DIL VWRRV +
Sbjct: 24 TEIRGIKWRKL----SANPDYTT-VDQLEDPVLVSYSKCIKADILSVWRRVARSSDQ--- 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPD-LSSIVTPEL 148
P+ T+ L KELWIFWYG+EP+ LS +++P+L
Sbjct: 76 ------------PRYTTD---QLSYNKELWIFWYGDEPENLSRLISPDL 109
>gi|156386472|ref|XP_001633936.1| predicted protein [Nematostella vectensis]
gi|156221013|gb|EDO41873.1| predicted protein [Nematostella vectensis]
Length = 227
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 22/113 (19%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCG+KW+K VH AG P L+DP+L+S++ LA DILC WR + P +
Sbjct: 24 TDLCGLKWKKFVH---AGHKL-PLLCVLDDPILSSFSAALAQDILCSWRSISPPSHKPRP 79
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE 153
G ++KE W+FWYG+EP+L+ IV+ +L +S +
Sbjct: 80 GTTK------------------FTSSKEFWVFWYGDEPNLTGIVSSQLKASTQ 114
>gi|348535272|ref|XP_003455125.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Oreochromis niloticus]
Length = 2122
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 33/110 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKWR+ V G ++ P +E EDP+L S+++CLA D+L VWRR TP
Sbjct: 24 DLTGIKWRRFVWQGPTSSPILFPVTE--EDPILCSFSRCLAADVLSVWRRHHTP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ELW+FW+G++P + ++ EL S
Sbjct: 76 ------------------------GRRELWLFWWGDDPSFAELIHNELLS 101
>gi|390351138|ref|XP_780593.3| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Strongylocentrotus purpuratus]
Length = 1404
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 23/107 (21%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
DL GI+WR + + PLEDPVL SYAKC+ +IL VWR T + G
Sbjct: 25 DLSGIRWRHY-----SWIRPTEPVAPLEDPVLQSYAKCIKANILSVWRCHNTVRADLFAG 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ +KELWI+WYG+EP+ ++ PE+
Sbjct: 80 SETQI------------------QSKELWIYWYGDEPNFEDLIAPEI 108
>gi|344295372|ref|XP_003419386.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Loxodonta africana]
Length = 2413
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 62/151 (41%), Gaps = 36/151 (23%)
Query: 2 RGRGGGGGGER----EGGKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSA 57
R G GG R EGG R + E +K R +L GIKWR+ G
Sbjct: 189 RASPGEGGEARLTGEEGGAARPPLGAQTPESQKAIAPSRR--KAELTGIKWRRYNFGGHG 246
Query: 58 GTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTS 117
G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 247 DCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD---------------------- 284
Query: 118 VPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 285 --------CKELWIFWWGDEPNLVGVIHHEL 307
>gi|354467014|ref|XP_003495966.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Cricetulus griseus]
Length = 2188
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 30/109 (27%)
Query: 40 DTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGS 99
D +L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 4 DAELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD---- 59
Query: 100 GGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 --------------------------CKELWIFWWGDEPNLVGVIHHEL 82
>gi|118098868|ref|XP_415317.2| PREDICTED: mediator complex subunit 13-like [Gallus gallus]
Length = 2195
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 36/113 (31%)
Query: 39 GDTDLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQ 95
G+ +L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 2 GEAELTGIKWRRYNFEGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPD 58
Query: 96 NGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 59 ------------------------------CKELWIFWWGDEPNLVDVIHREL 81
>gi|410914654|ref|XP_003970802.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Takifugu rubripes]
Length = 2166
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L S+++CL D+LCVWRR
Sbjct: 23 DLTGIKWKRFVWQGPTSAPMLFPVTE--EDPILCSFSRCLKADVLCVWRRSQR------- 73
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
Q +ELW+FW+G++P+ + ++ EL
Sbjct: 74 -----------------------QGRRELWMFWWGDDPNFADLIHHEL 98
>gi|410910158|ref|XP_003968557.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Takifugu rubripes]
Length = 2106
Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 33/110 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKWR+ V G ++ P +E EDP+L S+++C+A D+L VWRR TP
Sbjct: 24 DLTGIKWRRFVWQGPTSSPILFPVTE--EDPILCSFSRCMAADVLSVWRRHHTP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
+ELW+FW+G++P + ++ EL S
Sbjct: 76 ------------------------GRRELWLFWWGDDPSFAELIHNELSS 101
>gi|426247758|ref|XP_004017643.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Ovis aries]
Length = 2265
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 30/111 (27%)
Query: 38 GGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNG 97
G +L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 77 GDQAELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD-- 134
Query: 98 GSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 135 ----------------------------CKELWIFWWGDEPNLVGVIHHEL 157
>gi|432891783|ref|XP_004075645.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Oryzias latipes]
Length = 2101
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 33/110 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKWR+ V G ++ P +E EDP+L S+++CLA D+L VWRR T
Sbjct: 24 DLTGIKWRRFVWQGPTSSPILFPFTE--EDPILYSFSRCLAADVLSVWRRHHT------- 74
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
Q +ELW+FW+G++P + ++ EL S
Sbjct: 75 -----------------------QGRRELWLFWWGDDPSFAELIHNELSS 101
>gi|348584428|ref|XP_003477974.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Cavia porcellus]
Length = 2190
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 30/109 (27%)
Query: 40 DTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGS 99
+ +L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 4 NAELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD---- 59
Query: 100 GGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 --------------------------CKELWIFWWGDEPNLGGVIHHEL 82
>gi|198415621|ref|XP_002119420.1| PREDICTED: similar to mediator complex subunit 13, partial [Ciona
intestinalis]
Length = 1817
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 28/102 (27%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
DL GIKW + + SPG +DPVLA++ KCLA DIL VWR+
Sbjct: 25 DLSGIKWHRY-------SSISPGLA--DDPVLAAFTKCLALDILAVWRK----------- 64
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSI 143
S P +P ++ +ELWIFW+GEEP++ I
Sbjct: 65 ------SSKKSPMQHGLPQEGIE--RELWIFWWGEEPNIDEI 98
>gi|47210173|emb|CAF90589.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2253
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 33/110 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKWR+ V G ++ P +E EDP+L S+++C+A D+L VWRR T
Sbjct: 24 DLTGIKWRRFVWQGPTSSPILFPVTE--EDPILCSFSRCMAADVLSVWRRHHT------- 74
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPELFS 150
Q +ELW+FW+G++P + ++ EL S
Sbjct: 75 -----------------------QGRRELWLFWWGDDPSFAELIHNELSS 101
>gi|431914234|gb|ELK15492.1| Mediator of RNA polymerase II transcription subunit 13-like protein
[Pteropus alecto]
Length = 2195
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 30/117 (25%)
Query: 32 ERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRV 91
E+ E +L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR
Sbjct: 2 EKSQELSVQAELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRD 61
Query: 92 GTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
P KELWIFW+G+EP+L ++ EL
Sbjct: 62 VKPD------------------------------CKELWIFWWGDEPNLVGVIHHEL 88
>gi|196010776|ref|XP_002115252.1| hypothetical protein TRIADDRAFT_29175 [Trichoplax adhaerens]
gi|190582023|gb|EDV22097.1| hypothetical protein TRIADDRAFT_29175 [Trichoplax adhaerens]
Length = 202
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 38/107 (35%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
D+ G+KWR+ A T S PL DP+L SYA LA D+LCVW+
Sbjct: 2 DVKGLKWRRY----QARTD--TASLPLSDPILVSYANALAQDVLCVWQH----------- 44
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
L KELW+FW+G++P+LS+I++ EL
Sbjct: 45 ---------------------LNGMKELWLFWFGDDPNLSNILSSEL 70
>gi|291407023|ref|XP_002719831.1| PREDICTED: mediator complex subunit 13-like [Oryctolagus cuniculus]
Length = 2190
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 30/111 (27%)
Query: 38 GGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNG 97
G +L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 2 GSLAELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD-- 59
Query: 98 GSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 ----------------------------CKELWIFWWGDEPNLVGVIHHEL 82
>gi|301770725|ref|XP_002920781.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Ailuropoda melanoleuca]
Length = 2208
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 24 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 77
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 78 ------------------------CKELWIFWWGDEPNLVGVIHHEL 100
>gi|417414091|gb|JAA53346.1| Putative thyroid hormone receptor-associated protein complex
subunit, partial [Desmodus rotundus]
Length = 2250
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 22 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 75
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 76 ------------------------CKELWIFWWGDEPNLVGVIHHEL 98
>gi|296213025|ref|XP_002753089.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Callithrix jacchus]
Length = 2191
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 6 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 59
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 ------------------------CKELWIFWWGDEPNLVGVIHHEL 82
>gi|332250746|ref|XP_003274512.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Nomascus leucogenys]
Length = 2198
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 14 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 67
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 68 ------------------------CKELWIFWWGDEPNLVGVIHHEL 90
>gi|326931507|ref|XP_003211870.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Meleagris gallopavo]
Length = 2197
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 33/123 (26%)
Query: 27 EVEKWERLGERGGDTDLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDIL 85
E + + E + DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L
Sbjct: 23 EAVNFSEIAEEWQNADLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVL 80
Query: 86 CVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVT 145
VWRR P +ELWIFW+G++P+ + ++
Sbjct: 81 SVWRRDQRP------------------------------GRRELWIFWWGDDPNFADLIH 110
Query: 146 PEL 148
+L
Sbjct: 111 HDL 113
>gi|44771211|ref|NP_056150.1| mediator of RNA polymerase II transcription subunit 13-like [Homo
sapiens]
gi|74749769|sp|Q71F56.1|MD13L_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
13-like; AltName: Full=Mediator complex subunit 13-like;
AltName: Full=Thyroid hormone receptor-associated
protein 2; AltName: Full=Thyroid hormone
receptor-associated protein complex 240 kDa
component-like
gi|33325045|gb|AAQ08182.1| PROSIT240 [Homo sapiens]
gi|38036174|gb|AAR08418.1| thyroid hormone receptor-associated protein complex 240 kDa
component-like [Homo sapiens]
gi|120659864|gb|AAI30423.1| Mediator complex subunit 13-like [Homo sapiens]
Length = 2210
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|410221240|gb|JAA07839.1| mediator complex subunit 13-like [Pan troglodytes]
gi|410259628|gb|JAA17780.1| mediator complex subunit 13-like [Pan troglodytes]
gi|410308196|gb|JAA32698.1| mediator complex subunit 13-like [Pan troglodytes]
gi|410348912|gb|JAA41060.1| mediator complex subunit 13-like [Pan troglodytes]
Length = 2210
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|149720623|ref|XP_001489783.1| PREDICTED: mediator complex subunit 13-like [Equus caballus]
Length = 2190
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 6 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 59
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 ------------------------CKELWIFWWGDEPNLVGVIHHEL 82
>gi|119618487|gb|EAW98081.1| thyroid hormone receptor associated protein 2 [Homo sapiens]
Length = 2195
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 11 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 64
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 65 ------------------------CKELWIFWWGDEPNLVGVIHHEL 87
>gi|417515711|gb|JAA53668.1| mediator of RNA polymerase II transcription subunit 13-like protein
[Sus scrofa]
Length = 2209
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|395744919|ref|XP_002823874.2| PREDICTED: mediator complex subunit 13-like [Pongo abelii]
Length = 2198
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 14 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 67
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 68 ------------------------CKELWIFWWGDEPNLVGVIHHEL 90
>gi|332840500|ref|XP_003313999.1| PREDICTED: mediator complex subunit 13-like, partial [Pan
troglodytes]
Length = 2230
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 46 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 99
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 100 ------------------------CKELWIFWWGDEPNLVGVIHHEL 122
>gi|426374272|ref|XP_004054002.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Gorilla gorilla gorilla]
Length = 2200
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 16 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 69
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 70 ------------------------CKELWIFWWGDEPNLVGVIHHEL 92
>gi|402887785|ref|XP_003907261.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Papio anubis]
Length = 2210
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|397525010|ref|XP_003832472.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Pan paniscus]
Length = 2200
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 16 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 69
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 70 ------------------------CKELWIFWWGDEPNLVGVIHHEL 92
>gi|355786565|gb|EHH66748.1| hypothetical protein EGM_03797, partial [Macaca fascicularis]
Length = 2190
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 6 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 59
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 ------------------------CKELWIFWWGDEPNLVGVIHHEL 82
>gi|355564716|gb|EHH21216.1| hypothetical protein EGK_04229, partial [Macaca mulatta]
Length = 2190
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 6 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 59
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 60 ------------------------CKELWIFWWGDEPNLVGVIHHEL 82
>gi|387849173|ref|NP_001248461.1| mediator of RNA polymerase II transcription subunit 13-like [Macaca
mulatta]
gi|380787521|gb|AFE65636.1| mediator of RNA polymerase II transcription subunit 13-like [Macaca
mulatta]
gi|383410357|gb|AFH28392.1| mediator of RNA polymerase II transcription subunit 13-like [Macaca
mulatta]
Length = 2210
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|345791178|ref|XP_534693.3| PREDICTED: mediator complex subunit 13-like [Canis lupus
familiaris]
Length = 2194
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 10 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 63
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 64 ------------------------CKELWIFWWGDEPNLVGVIHHEL 86
>gi|403281842|ref|XP_003932383.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Saimiri boliviensis boliviensis]
Length = 2268
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 83 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 136
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 137 ------------------------CKELWIFWWGDEPNLVGVIHHEL 159
>gi|291042494|gb|ADD71872.1| thyroid hormone receptor-associated 240-like protein [Rattus
norvegicus]
Length = 2207
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|300794669|ref|NP_001179397.1| mediator of RNA polymerase II transcription subunit 13-like [Bos
taurus]
Length = 2209
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|392332681|ref|XP_003752659.1| PREDICTED: mediator complex subunit 13-like [Rattus norvegicus]
gi|392352563|ref|XP_003751246.1| PREDICTED: mediator complex subunit 13-like [Rattus norvegicus]
Length = 2196
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 16 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 69
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 70 ------------------------CKELWIFWWGDEPNLVGVIHHEL 92
>gi|395833974|ref|XP_003789992.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Otolemur garnettii]
Length = 2210
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|83305883|sp|Q6JPI3.2|MD13L_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
13-like; AltName: Full=Mediator complex subunit 13-like;
AltName: Full=Thyroid hormone receptor-associated
protein 2; AltName: Full=Thyroid hormone
receptor-associated protein complex 240 kDa
component-like
Length = 2207
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|146134449|ref|NP_766012.3| mediator of RNA polymerase II transcription subunit 13-like [Mus
musculus]
gi|225000682|gb|AAI72732.1| Mediator complex subunit 13-like [synthetic construct]
gi|225356506|gb|AAI56486.1| Mediator complex subunit 13-like [synthetic construct]
Length = 2207
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|327276156|ref|XP_003222836.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 13-like [Anolis carolinensis]
Length = 2186
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 36/110 (32%)
Query: 42 DLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGG 98
+L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 21 ELTGIKWRRYNFEGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPN--- 74
Query: 99 SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 75 ---------------------------CKELWIFWWGDEPNLVDVIHREL 97
>gi|126324384|ref|XP_001365407.1| PREDICTED: mediator complex subunit 13-like isoform 1 [Monodelphis
domestica]
Length = 2201
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVDVIHHEL 102
>gi|301619721|ref|XP_002939237.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Xenopus (Silurana) tropicalis]
Length = 2197
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ + G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 79 ELTGIKWRRYRYQGPGECGPVISAPAQDDPILLSFIRCLQANLLCVWRREVKPDR----- 133
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 134 -------------------------KELWIFWWGDEPNLGDVIHHEL 155
>gi|38036201|gb|AAR08419.1| thyroid hormone receptor-associated protein complex 240 kDa
component-like [Mus musculus]
Length = 2203
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|402899848|ref|XP_003912898.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Papio anubis]
Length = 2174
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPNFADLIHHDL 99
>gi|326930078|ref|XP_003211179.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Meleagris gallopavo]
Length = 2272
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 36/110 (32%)
Query: 42 DLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGG 98
+L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 82 ELTGIKWRRYNFEGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPD--- 135
Query: 99 SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 136 ---------------------------CKELWIFWWGDEPNLVDVIHREL 158
>gi|47223583|emb|CAF99192.1| unnamed protein product [Tetraodon nigroviridis]
Length = 134
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 30/117 (25%)
Query: 32 ERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRV 91
E +G +L GIKWR G + +DPVL S+ +C+ ++LCVWRR
Sbjct: 7 EHVGLSLKYAELTGIKWRCYCFRSGGEYGPVISAPAQDDPVLRSFMRCVQANLLCVWRRK 66
Query: 92 GTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
P+ AKELWIFW+GEEP+L+ ++ EL
Sbjct: 67 VKPE------------------------------AKELWIFWWGEEPNLADVIHHEL 93
>gi|383423397|gb|AFH34912.1| mediator of RNA polymerase II transcription subunit 13 [Macaca
mulatta]
Length = 2174
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPNFADLIHHDL 99
>gi|380786745|gb|AFE65248.1| mediator of RNA polymerase II transcription subunit 13 [Macaca
mulatta]
Length = 2174
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPNFADLIHHDL 99
>gi|355754062|gb|EHH58027.1| hypothetical protein EGM_07789, partial [Macaca fascicularis]
Length = 2155
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 5 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 56
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 57 ------------------------GRRELWIFWWGEDPNFADLIHHDL 80
>gi|355568592|gb|EHH24873.1| hypothetical protein EGK_08602, partial [Macaca mulatta]
Length = 2155
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 5 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 56
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 57 ------------------------GRRELWIFWWGEDPNFADLIHHDL 80
>gi|296478636|tpg|DAA20751.1| TPA: mediator complex subunit 13-like [Bos taurus]
Length = 2674
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 36/110 (32%)
Query: 42 DLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGG 98
+L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 491 ELTGIKWRRYNFGGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPD--- 544
Query: 99 SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 545 ---------------------------CKELWIFWWGDEPNLVGVIHHEL 567
>gi|351714843|gb|EHB17762.1| Mediator of RNA polymerase II transcription subunit 13, partial
[Heterocephalus glaber]
Length = 2153
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 5 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLSVWRRDQRP------ 56
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 57 ------------------------GRRELWIFWWGEDPNFADLIHHDL 80
>gi|301608632|ref|XP_002933885.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Xenopus (Silurana) tropicalis]
Length = 2101
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ + G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYIWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLSVWRRDERP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPNFADLIHHDL 99
>gi|410976768|ref|XP_003994785.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Felis catus]
Length = 1924
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 22 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 75
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 76 ------------------------CKELWIFWWGDEPNLVGVIHHEL 98
>gi|74210852|dbj|BAE25053.1| unnamed protein product [Mus musculus]
Length = 465
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 36/110 (32%)
Query: 42 DLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGG 98
+L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPD--- 79
Query: 99 SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ---------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|348567424|ref|XP_003469499.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 13-like [Cavia porcellus]
Length = 2213
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 66 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLSVWRRDQRP------ 117
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 118 ------------------------GRRELWIFWWGEDPNFADLIHHDL 141
>gi|426347253|ref|XP_004041271.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Gorilla gorilla gorilla]
Length = 2064
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|224071919|ref|XP_002196121.1| PREDICTED: mediator complex subunit 13-like-like [Taeniopygia
guttata]
Length = 2206
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 36/110 (32%)
Query: 42 DLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGG 98
+L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 14 ELTGIKWRRYNFEGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPD--- 67
Query: 99 SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 68 ---------------------------CKELWIFWWGDEPNLVDVIHREL 90
>gi|410216582|gb|JAA05510.1| mediator complex subunit 13 [Pan troglodytes]
gi|410263542|gb|JAA19737.1| mediator complex subunit 13 [Pan troglodytes]
gi|410306790|gb|JAA31995.1| mediator complex subunit 13 [Pan troglodytes]
gi|410350735|gb|JAA41971.1| mediator complex subunit 13 [Pan troglodytes]
Length = 2174
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|348536266|ref|XP_003455618.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Oreochromis niloticus]
Length = 2114
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 34/109 (31%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSP--GSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGS 99
+L GIKWR + S+G Y P + +DPVL S+ +C+ ++LCVWRR P
Sbjct: 26 ELTGIKWR--CYRFSSGGEYGPVISAPAQDDPVLRSFMRCVQSNLLCVWRRKIKPD---- 79
Query: 100 GGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
AKELWIFW+GEEP+L+ ++ EL
Sbjct: 80 --------------------------AKELWIFWWGEEPNLTGVIHQEL 102
>gi|397486826|ref|XP_003814522.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 13 [Pan paniscus]
Length = 2174
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|102468717|ref|NP_005112.2| mediator of RNA polymerase II transcription subunit 13 [Homo
sapiens]
gi|317373421|sp|Q9UHV7.3|MED13_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
13; AltName: Full=Activator-recruited cofactor 250 kDa
component; Short=ARC250; AltName: Full=Mediator complex
subunit 13; AltName: Full=Thyroid hormone
receptor-associated protein 1; AltName: Full=Thyroid
hormone receptor-associated protein complex 240 kDa
component; Short=Trap240; AltName: Full=Vitamin D3
receptor-interacting protein complex component DRIP250;
Short=DRIP250
gi|119571823|gb|EAW51438.1| thyroid hormone receptor associated protein 1, isoform CRA_b [Homo
sapiens]
gi|119571824|gb|EAW51439.1| thyroid hormone receptor associated protein 1, isoform CRA_b [Homo
sapiens]
gi|187955003|gb|AAI40892.1| Mediator complex subunit 13 [Homo sapiens]
Length = 2174
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|170583363|ref|XP_001896545.1| hypothetical protein Bm1_25425 [Brugia malayi]
gi|158596220|gb|EDP34609.1| hypothetical protein Bm1_25425 [Brugia malayi]
Length = 1180
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 19/112 (16%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
T+L G+KW+ L S T S +DPVL++YA+CL ILC WRR PQ G+
Sbjct: 19 TELNGLKWKCLTTPLSQRTWTSLE----QDPVLSAYARCLQAGILCAWRR-QPPQPTGTL 73
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYG-EEPDLSSIVTPELFSS 151
+P + KELW+FWY EEPD + T L S
Sbjct: 74 AA-------------MQLPDYRIDVVKELWVFWYSHEEPDCLTEYTSHLACS 112
>gi|297715614|ref|XP_002834181.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Pongo abelii]
Length = 2115
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|126307412|ref|XP_001362355.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Monodelphis domestica]
Length = 2172
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPNFADLIHHDL 99
>gi|114669769|ref|XP_001138050.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
isoform 1 [Pan troglodytes]
Length = 2188
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 38 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 89
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 90 ------------------------GRRELWIFWWGEDPSFADLIHHDL 113
>gi|395531834|ref|XP_003767978.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Sarcophilus harrisii]
Length = 2197
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 76 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 127
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 128 ------------------------GRRELWIFWWGEDPNFADLIHHDL 151
>gi|344285341|ref|XP_003414420.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Loxodonta africana]
Length = 2117
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 8 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 59
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 60 ------------------------GRRELWIFWWGEDPNFADLIHHDL 83
>gi|296201893|ref|XP_002748227.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Callithrix jacchus]
Length = 2174
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPNFADLIHHDL 99
>gi|403275344|ref|XP_003929410.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Saimiri boliviensis boliviensis]
Length = 2233
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 33/113 (29%)
Query: 37 RGGDTDLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQ 95
R DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 78 RAERADLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP- 134
Query: 96 NGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 135 -----------------------------GRRELWIFWWGEDPNFADLIHHDL 158
>gi|393906457|gb|EFO28201.2| hypothetical protein LOAG_00283 [Loa loa]
Length = 2610
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 19/109 (17%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
T+L G+KW+ L S T S +DPVL++YA+CL ILC WRR PQ G+
Sbjct: 19 TELNGLKWKCLTTPLSQRTWTSLE----QDPVLSAYARCLQAGILCAWRR-QPPQPTGTL 73
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYG-EEPDLSSIVTPEL 148
+P + KELW+FWY EEPD + T L
Sbjct: 74 AA-------------MQLPDYRIDVVKELWVFWYSHEEPDCLTEYTSHL 109
>gi|432887629|ref|XP_004074946.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Oryzias latipes]
Length = 2145
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 35/137 (25%)
Query: 14 GGKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSP--GSEPLEDP 71
G +V + + E +G G L GIKWR + +G + P + +DP
Sbjct: 62 GSQVERHAVDWAQAAENHNNIGVLGA-FQLTGIKWR--CYSFRSGGEFGPLISAPAQDDP 118
Query: 72 VLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWI 131
VL S+ +C+ ++LCVWRR P AKELWI
Sbjct: 119 VLRSFMRCVHANLLCVWRRKIKPD------------------------------AKELWI 148
Query: 132 FWYGEEPDLSSIVTPEL 148
FW+GEEP+LS ++ EL
Sbjct: 149 FWWGEEPNLSDVIHHEL 165
>gi|312065604|ref|XP_003135871.1| hypothetical protein LOAG_00283 [Loa loa]
Length = 2646
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 19/109 (17%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
T+L G+KW+ L S T S +DPVL++YA+CL ILC WRR PQ G+
Sbjct: 55 TELNGLKWKCLTTPLSQRTWTSLE----QDPVLSAYARCLQAGILCAWRR-QPPQPTGTL 109
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYG-EEPDLSSIVTPEL 148
+P + KELW+FWY EEPD + T L
Sbjct: 110 AA-------------MQLPDYRIDVVKELWVFWYSHEEPDCLTEYTSHL 145
>gi|26353894|dbj|BAC40577.1| unnamed protein product [Mus musculus]
Length = 243
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 36/111 (32%)
Query: 41 TDLCGIKWRKLV---HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNG 97
+L GIKWR+ HGD +P + DP+L S+ +CL ++LCVWRR P
Sbjct: 25 AELTGIKWRRYNFGGHGDCGPIISAPAQD---DPILLSFIRCLQANLLCVWRRDVKPD-- 79
Query: 98 GSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ----------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>gi|417414074|gb|JAA53339.1| Putative thyroid hormone receptor-associated protein complex
subunit, partial [Desmodus rotundus]
Length = 2151
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 3 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 54
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 55 ------------------------GRRELWIFWWGEDPNFADLIHHDL 78
>gi|194217212|ref|XP_001500884.2| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Equus caballus]
Length = 2165
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 17 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 68
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 69 ------------------------GRRELWIFWWGEDPNFADLIHHDL 92
>gi|440908863|gb|ELR58841.1| Mediator of RNA polymerase II transcription subunit 13, partial
[Bos grunniens mutus]
Length = 2175
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 25 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 76
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 77 ------------------------GRRELWIFWWGEDPNFADLIHHDL 100
>gi|345324850|ref|XP_001509907.2| PREDICTED: mediator of RNA polymerase II transcription subunit 13,
partial [Ornithorhynchus anatinus]
Length = 2169
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 19 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 70
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 71 ------------------------GRRELWIFWWGEDPNFADLIHHDL 94
>gi|402594414|gb|EJW88340.1| hypothetical protein WUBG_00750 [Wuchereria bancrofti]
Length = 1376
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 19/112 (16%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
T+L G+KW+ L S T S +DPVL++YA+CL ILC WRR PQ G+
Sbjct: 19 TELNGLKWKCLTTPLSQRTWTSLE----QDPVLSAYARCLQAGILCAWRR-QPPQPTGTL 73
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYG-EEPDLSSIVTPELFSS 151
+P + KELW+FWY EEPD + T L S
Sbjct: 74 AA-------------MQLPDYRIDVVKELWVFWYSHEEPDCLTEYTSHLACS 112
>gi|4530437|gb|AAD22032.1| thyroid hormone receptor-associated protein complex component
TRAP240 [Homo sapiens]
Length = 2174
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 33/105 (31%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVT 145
+ELWIFW+GE+P L ++ T
Sbjct: 76 ------------------------GRRELWIFWWGEDPVLLTLFT 96
>gi|297486414|ref|XP_002695649.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Bos taurus]
gi|296477091|tpg|DAA19206.1| TPA: skuld-like [Bos taurus]
Length = 2157
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 7 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 58
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 59 ------------------------GRRELWIFWWGEDPNFADLIHHDL 82
>gi|426238587|ref|XP_004013232.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Ovis aries]
Length = 2157
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 7 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 58
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 59 ------------------------GRRELWIFWWGEDPNFADLIHHDL 82
>gi|47216840|emb|CAG02731.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2163
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L S+++CL D+L VWRR
Sbjct: 22 DLTGIKWKRFVWQGPTSAPMLFPVTE--EDPILCSFSRCLKADVLSVWRRSQR------- 72
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
Q +ELW+FW+G++P+ + ++ EL
Sbjct: 73 -----------------------QGRRELWLFWWGDDPNFADLIHHEL 97
>gi|449269836|gb|EMC80577.1| Mediator of RNA polymerase II transcription subunit 13 [Columba
livia]
Length = 2169
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLSVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGDDPNFADLIHHDL 99
>gi|363741191|ref|XP_415884.3| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Gallus gallus]
Length = 2181
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLSVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGDDPNFADLIHHDL 99
>gi|194675789|ref|XP_603205.4| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Bos taurus]
Length = 2332
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 182 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 233
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 234 ------------------------GRRELWIFWWGEDPNFADLIHHDL 257
>gi|224076629|ref|XP_002199236.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Taeniopygia guttata]
Length = 2179
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLSVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGDDPNFADLIHHDL 99
>gi|301777948|ref|XP_002924392.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Ailuropoda melanoleuca]
Length = 2171
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|139948785|ref|NP_001077307.1| mediator of RNA polymerase II transcription subunit 13-like [Danio
rerio]
gi|166233815|sp|A2VCZ5.1|MD13L_DANRE RecName: Full=Mediator of RNA polymerase II transcription subunit
13-like; AltName: Full=Thyroid hormone
receptor-associated protein complex 240 kDa
component-like protein
gi|125857995|gb|AAI29033.1| Zgc:153454 protein [Danio rerio]
Length = 2102
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+ V G ++ P +E EDP+L S+++CL D+L VWRR TP
Sbjct: 24 DLTGIKWKCFVWQGPTSSPILFPVTE--EDPILCSFSRCLKADVLSVWRRHQTP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + +V +L
Sbjct: 76 ------------------------GRRELWIFWWGDDPNFAELVHHDL 99
>gi|345805272|ref|XP_537704.3| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Canis lupus familiaris]
Length = 2262
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 113 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 164
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 165 ------------------------GRRELWIFWWGEDPNFADLIHHDL 188
>gi|395845983|ref|XP_003795696.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Otolemur garnettii]
Length = 2155
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|291405670|ref|XP_002719132.1| PREDICTED: mediator complex subunit 13 [Oryctolagus cuniculus]
Length = 2196
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 48 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 99
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 100 ------------------------GRRELWIFWWGEDPNFADLIHHDL 123
>gi|281342512|gb|EFB18096.1| hypothetical protein PANDA_013718 [Ailuropoda melanoleuca]
Length = 2149
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 2 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 53
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 54 ------------------------GRRELWIFWWGEDPSFADLIHHDL 77
>gi|345321772|ref|XP_003430488.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like, partial [Ornithorhynchus anatinus]
Length = 1547
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 2 ELTGIKWRRYDFGGHGECGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 55
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G+EP+L ++ EL
Sbjct: 56 ------------------------CRELWIFWWGDEPNLVDVIHQEL 78
>gi|124286862|ref|NP_001074400.1| mediator of RNA polymerase II transcription subunit 13 [Mus
musculus]
gi|81910189|sp|Q5SWW4.1|MED13_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
13; AltName: Full=Thyroid hormone receptor-associated
protein 1; AltName: Full=Thyroid hormone
receptor-associated protein complex 240 kDa component;
Short=Trap240
gi|162318540|gb|AAI56351.1| Mediator complex subunit 13 [synthetic construct]
Length = 2171
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGKDPNFADLIHHDL 99
>gi|354497406|ref|XP_003510811.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13
[Cricetulus griseus]
Length = 2155
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 8 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 59
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 60 ------------------------GRRELWIFWWGKDPNFADLIHHDL 83
>gi|432901009|ref|XP_004076765.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Oryzias latipes]
Length = 2051
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+ V G ++ P +E EDP+L S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKMFVWQGPTSAPILFPVTE--EDPILCSFSRCLKADVLSVWRRSQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELW+FW+G++P+ + ++ EL
Sbjct: 76 ------------------------GRRELWLFWWGDDPNFTELIHHEL 99
>gi|327285202|ref|XP_003227323.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like [Anolis carolinensis]
Length = 1450
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+SY++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWEGPTSAPILFPVTE--EDPILSSYSRCLKADVLSVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+EL IFW+G++P+ + ++ EL
Sbjct: 76 ------------------------GRRELMIFWWGDDPNFADLIHHEL 99
>gi|119571822|gb|EAW51437.1| thyroid hormone receptor associated protein 1, isoform CRA_a [Homo
sapiens]
Length = 372
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>gi|324499641|gb|ADY39851.1| Mediator of RNA polymerase II transcription subunit 13 [Ascaris
suum]
Length = 2659
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 57/115 (49%), Gaps = 22/115 (19%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLE-DPVLASYAKCLAGDILCVWRRVGTPQNGGS 99
T+L G+KW+ L S T S LE DPVL++YAKCL ILC WRR PQ +
Sbjct: 25 TELNGLKWKCLTTPLSQRTWTS-----LEHDPVLSAYAKCLQAGILCAWRR-QPPQPSSA 78
Query: 100 GGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYG-EEPDLSSIVTPELFSSGE 153
LP +P + KELW+FWY EEP+ + T L S GE
Sbjct: 79 ---------LTALP----LPDYRIDVVKELWVFWYSQEEPECLAQYTSHL-SCGE 119
>gi|355701689|gb|AES01763.1| mediator complex subunit 13 [Mustela putorius furo]
Length = 72
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 33/103 (32%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 2 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 53
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSI 143
+ELWIFW+GE+P+ + +
Sbjct: 54 ------------------------GRRELWIFWWGEDPNFADL 72
>gi|71992166|ref|NP_495866.2| Protein LET-19 [Caenorhabditis elegans]
gi|75018624|sp|Q93442.3|MED13_CAEEL RecName: Full=Mediator of RNA polymerase II transcription subunit
13; AltName: Full=CeTRAP240; AltName: Full=Lethal
protein 19; AltName: Full=Mediator complex subunit 13
gi|54110638|emb|CAA91289.2| Protein LET-19 [Caenorhabditis elegans]
gi|71533163|dbj|BAE16563.1| Mediator complex subunit Med13 [Caenorhabditis elegans]
Length = 2862
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKW+ +A G + + D VL +Y+KCL ILC WRR P
Sbjct: 41 ELPGIKWKCYRTKPNAPRGVALTA----DFVLKAYSKCLLDGILCTWRRKPLPPT----- 91
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDL 140
D+ P++T+ S A KELW+FWY +EP L
Sbjct: 92 ------DNKETPKLTN---FSNDAPKELWVFWYDDEPAL 121
>gi|341881130|gb|EGT37065.1| CBN-LET-19 protein [Caenorhabditis brenneri]
Length = 3087
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 34/150 (22%)
Query: 6 GGGGGEREGGKVRETEEEEEEEVEKWERLGER-----GGDT-----------DLCGIKWR 49
G G R+ + + +E +++ + +++ +R GG DL GIKW+
Sbjct: 120 AGSGPARDSAEDMPSSKEGDKDASRKQKIVKRPEFNNGGSLEDCVSNVYALLDLPGIKWK 179
Query: 50 KLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDS 109
+A G S D +L +Y+KC+ +IL WRR P +
Sbjct: 180 CFRPKPNAPRGLPLAS----DLILKAYSKCVLNEILATWRRKPLPPTDNT---------- 225
Query: 110 IGLPQVTSVPPLSLQAAKELWIFWYGEEPD 139
+ P S +AKELW+FW+ EEP+
Sbjct: 226 ----DMLPAPYFSNDSAKELWVFWFDEEPE 251
>gi|341879129|gb|EGT35064.1| hypothetical protein CAEBREN_23274 [Caenorhabditis brenneri]
Length = 3047
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
DL GIKW+ +A G S D +L +Y+KC+ +IL WRR P +
Sbjct: 84 DLPGIKWKCFRPKPNAPRGLPLAS----DLILKAYSKCVLNEILATWRRKPLPPTDNT-- 137
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPD 139
+ P S +AKELW+FW+ EEP+
Sbjct: 138 ------------DMLPAPYFSNDSAKELWVFWFDEEPE 163
>gi|269849618|sp|P0C657.2|MED13_CAEBR RecName: Full=Mediator of RNA polymerase II transcription subunit
13; AltName: Full=Lethal protein 19; AltName:
Full=Mediator complex subunit 13
Length = 2974
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 25/101 (24%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPL-EDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
+L GIKW+ +A P PL D VL +Y++CL ILC WRR +P G +
Sbjct: 41 ELPGIKWKCFRPKLNA-----PRGVPLTSDLVLKAYSRCLTDGILCTWRRKPSPPTGNN- 94
Query: 101 GGGGGLFDSIGLPQVTSVPP---LSLQAAKELWIFWYGEEP 138
+PP S + KELW+FWY EP
Sbjct: 95 ---------------ELLPPTHFFSNDSPKELWVFWYDAEP 120
>gi|268532428|ref|XP_002631342.1| C. briggsae CBR-LET-19 protein [Caenorhabditis briggsae]
Length = 2898
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 25/101 (24%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPL-EDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
+L GIKW+ +A P PL D VL +Y++CL ILC WRR +P G +
Sbjct: 40 ELPGIKWKCFRPKLNA-----PRGVPLTSDLVLKAYSRCLTDGILCTWRRKPSPPTGNN- 93
Query: 101 GGGGGLFDSIGLPQVTSVPP---LSLQAAKELWIFWYGEEP 138
+PP S + KELW+FWY EP
Sbjct: 94 ---------------ELLPPTHFFSNDSPKELWVFWYDAEP 119
>gi|345483021|ref|XP_003424727.1| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like isoform 2 [Nasonia vitripennis]
Length = 2070
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 25/27 (92%)
Query: 124 QAAKELWIFWYGEEPDLSSIVTPELFS 150
QAAKELWIFWYGEEPDL+ +V+PEL +
Sbjct: 22 QAAKELWIFWYGEEPDLTGLVSPELIA 48
>gi|345483019|ref|XP_001604244.2| PREDICTED: mediator of RNA polymerase II transcription subunit
13-like isoform 1 [Nasonia vitripennis]
Length = 2194
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 25/27 (92%)
Query: 124 QAAKELWIFWYGEEPDLSSIVTPELFS 150
QAAKELWIFWYGEEPDL+ +V+PEL +
Sbjct: 22 QAAKELWIFWYGEEPDLTGLVSPELIA 48
>gi|256079566|ref|XP_002576057.1| hypothetical protein [Schistosoma mansoni]
gi|353230846|emb|CCD77263.1| hypothetical protein Smp_147560 [Schistosoma mansoni]
Length = 2353
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 29/112 (25%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGS--EPLEDPVLASYAKCLAGDILCVWRRVGTPQNGG 98
TD GI++RK + ++P +PL DP++ SY C +L W R P++
Sbjct: 26 TDFSGIQYRKYIL-------HTPKEYHDPLNDPIIKSYTLCQKYGVLSAWVR-SKPESSD 77
Query: 99 SGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEE--PDLSSIVTPEL 148
S P + AKELW+FWYG + P+ S + PEL
Sbjct: 78 -----------------LSNPCAFSKFAKELWVFWYGNDDFPNADSCILPEL 112
>gi|340376393|ref|XP_003386717.1| PREDICTED: hypothetical protein LOC100634733 [Amphimedon
queenslandica]
Length = 798
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 29/104 (27%)
Query: 45 GIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGG 104
G+KW + V G S P DPVL SYAK L+ C W R+ +G SG G
Sbjct: 24 GLKWVRYV-----GPNSSSLETPKVDPVLTSYAKLLSEGYACSWSRLSPSTDGVSGEG-- 76
Query: 105 GLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
K+LW+F++ PDLS + P+L
Sbjct: 77 ----------------------KDLWVFYFTTLPDLSQELAPDL 98
>gi|332017084|gb|EGI57883.1| Mediator of RNA polymerase II transcription subunit 13 [Acromyrmex
echinatior]
Length = 1903
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 22/24 (91%)
Query: 127 KELWIFWYGEEPDLSSIVTPELFS 150
KELWIFWYGEEPDLS +V+PEL +
Sbjct: 1 KELWIFWYGEEPDLSGLVSPELIA 24
>gi|308510662|ref|XP_003117514.1| CRE-LET-19 protein [Caenorhabditis remanei]
gi|308242428|gb|EFO86380.1| CRE-LET-19 protein [Caenorhabditis remanei]
Length = 2923
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPL-EDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
+L GIKW+ +A P PL D VL +Y++C+ ILC WRR +
Sbjct: 42 ELPGIKWKCFRTKPNA-----PRGVPLTSDLVLKAYSRCVLDGILCTWRRKPSAPT---- 92
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEP 138
D+ L T S + KELW+FWY +EP
Sbjct: 93 -------DNDELLPATHF--FSNDSPKELWVFWYDDEP 121
>gi|313239430|emb|CBY14366.1| unnamed protein product [Oikopleura dioica]
Length = 878
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 25/99 (25%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
DL GIKW K ++ P +D +L+++AKC+ ILC WRR +N G
Sbjct: 14 DLPGIKWTKYSFANTLPC------LPGDDAILSAFAKCMREGILCTWRR--PMENAG--- 62
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDL 140
+ P S + KELW FW+G++P L
Sbjct: 63 ------------REKETP--SSEHKKELWCFWWGDKPAL 87
>gi|50551651|ref|XP_503300.1| YALI0D26103p [Yarrowia lipolytica]
gi|49649168|emb|CAG81506.1| YALI0D26103p [Yarrowia lipolytica CLIB122]
Length = 760
Score = 37.0 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 15 GKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLA 74
GK+++ E EE E+V KW D IKW L H G + P EPL VL
Sbjct: 107 GKIKKEETEEAEDVYKWWE-----NDNQDDSIKWETLEH---KGVMFPPEYEPLPKSVLM 158
Query: 75 SY 76
Y
Sbjct: 159 KY 160
>gi|125525598|gb|EAY73712.1| hypothetical protein OsI_01591 [Oryza sativa Indica Group]
Length = 346
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 70 DPVLASYAKC----LAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQA 125
D ++A++ KC L + R GGG GG+ D L Q+ + P L
Sbjct: 73 DIIIATFPKCGTTWLKALLFATVHR--------DGGGAGGVEDDAALAQLRARNPHQLVP 124
Query: 126 AKELWIFWYGEEPDLSSIVTPELFSS 151
E+ ++ PDLSS+ P L ++
Sbjct: 125 FLEIQVYVRDRAPDLSSLPAPRLLAT 150
>gi|115436210|ref|NP_001042863.1| Os01g0311600 [Oryza sativa Japonica Group]
gi|20805090|dbj|BAB92762.1| steroid sulfotransferase [Oryza sativa Japonica Group]
gi|20805163|dbj|BAB92833.1| steroid sulfotransferase [Oryza sativa Japonica Group]
gi|113532394|dbj|BAF04777.1| Os01g0311600 [Oryza sativa Japonica Group]
gi|125570103|gb|EAZ11618.1| hypothetical protein OsJ_01482 [Oryza sativa Japonica Group]
Length = 346
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 70 DPVLASYAKC----LAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQA 125
D ++A++ KC L + R GGG GG+ D L Q+ + P L
Sbjct: 73 DIIIATFPKCGTTWLKALLFATVHR--------DGGGAGGVEDDAALAQLRARNPHQLVP 124
Query: 126 AKELWIFWYGEEPDLSSIVTPELFSS 151
E+ ++ PDLSS+ P L ++
Sbjct: 125 FLEIQVYVRDRAPDLSSLPAPRLLAT 150
>gi|46798895|emb|CAG27305.1| steroid sulfotransferase [Oryza sativa Japonica Group]
Length = 346
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 70 DPVLASYAKC----LAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQA 125
D ++A++ KC L + R GGG GG+ D L Q+ + P L
Sbjct: 73 DIIIATFPKCGTTWLKALLFATVHR--------DGGGAGGVEDDAALAQLRARNPHQLVP 124
Query: 126 AKELWIFWYGEEPDLSSIVTPELFSS 151
E+ ++ PDLSS+ P L ++
Sbjct: 125 FLEIQVYVRDRAPDLSSLPAPRLLAT 150
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,288,936,400
Number of Sequences: 23463169
Number of extensions: 165569171
Number of successful extensions: 1193814
Number of sequences better than 100.0: 559
Number of HSP's better than 100.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 305
Number of HSP's that attempted gapping in prelim test: 1188169
Number of HSP's gapped (non-prelim): 4137
length of query: 153
length of database: 8,064,228,071
effective HSP length: 116
effective length of query: 37
effective length of database: 9,637,467,763
effective search space: 356586307231
effective search space used: 356586307231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 71 (32.0 bits)