BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15424
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7KTX8|MED13_DROME Mediator of RNA polymerase II transcription subunit 13
OS=Drosophila melanogaster GN=skd PE=1 SV=1
Length = 2618
Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 13/112 (11%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
TDLCGIKWRK V+G+ + S+PL DP+L SY++C+ D+LCVWRRV + + +
Sbjct: 24 TDLCGIKWRKFVNGERP----NASSDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79
Query: 101 GGGGGLFDSIGLPQVTSV---PPLSLQAAKELWIFWYGEEPDLSSIVTPELF 149
+++ TS PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 P------NALTFEMTTSTKVHPPLSLAAAKELWIFWYGEEPDLSELVDAELL 125
>sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription subunit 13-like OS=Homo
sapiens GN=MED13L PE=1 SV=1
Length = 2210
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>sp|Q6JPI3|MD13L_MOUSE Mediator of RNA polymerase II transcription subunit 13-like OS=Mus
musculus GN=Med13l PE=1 SV=2
Length = 2207
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 30/107 (28%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR P
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRRDVKPD------ 79
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 80 ------------------------CKELWIFWWGDEPNLVGVIHHEL 102
>sp|Q9UHV7|MED13_HUMAN Mediator of RNA polymerase II transcription subunit 13 OS=Homo
sapiens GN=MED13 PE=1 SV=3
Length = 2174
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGEDPSFADLIHHDL 99
>sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcription subunit 13-like
OS=Danio rerio GN=zgc:153454 PE=2 SV=1
Length = 2102
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW+ V G ++ P +E EDP+L S+++CL D+L VWRR TP
Sbjct: 24 DLTGIKWKCFVWQGPTSSPILFPVTE--EDPILCSFSRCLKADVLSVWRRHQTP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + +V +L
Sbjct: 76 ------------------------GRRELWIFWWGDDPNFAELVHHDL 99
>sp|Q5SWW4|MED13_MOUSE Mediator of RNA polymerase II transcription subunit 13 OS=Mus
musculus GN=Med13 PE=2 SV=1
Length = 2171
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 33/108 (30%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP------ 75
Query: 101 GGGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 76 ------------------------GRRELWIFWWGKDPNFADLIHHDL 99
>sp|Q93442|MED13_CAEEL Mediator of RNA polymerase II transcription subunit 13
OS=Caenorhabditis elegans GN=let-19 PE=1 SV=3
Length = 2862
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGG 101
+L GIKW+ +A G + + D VL +Y+KCL ILC WRR P
Sbjct: 41 ELPGIKWKCYRTKPNAPRGVALTA----DFVLKAYSKCLLDGILCTWRRKPLPPT----- 91
Query: 102 GGGGLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDL 140
D+ P++T+ S A KELW+FWY +EP L
Sbjct: 92 ------DNKETPKLTN---FSNDAPKELWVFWYDDEPAL 121
>sp|P0C657|MED13_CAEBR Mediator of RNA polymerase II transcription subunit 13
OS=Caenorhabditis briggsae GN=let-19 PE=3 SV=2
Length = 2974
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 25/101 (24%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPL-EDPVLASYAKCLAGDILCVWRRVGTPQNGGSG 100
+L GIKW+ +A P PL D VL +Y++CL ILC WRR +P G +
Sbjct: 41 ELPGIKWKCFRPKLNA-----PRGVPLTSDLVLKAYSRCLTDGILCTWRRKPSPPTGNN- 94
Query: 101 GGGGGLFDSIGLPQVTSVPP---LSLQAAKELWIFWYGEEP 138
+PP S + KELW+FWY EP
Sbjct: 95 ---------------ELLPPTHFFSNDSPKELWVFWYDAEP 120
>sp|Q0C3D1|COXX_HYPNA Protoheme IX farnesyltransferase OS=Hyphomonas neptunium (strain
ATCC 15444) GN=ctaB PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 73 LASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWIF 132
L +++ G I +W + TPQN GGG G IG VT PL + F
Sbjct: 128 LLAFSIFYYGVIYTMWLKRATPQNIVIGGGAGAFPPVIGWAAVTGNTPLDAWILFAIIFF 187
Query: 133 W 133
W
Sbjct: 188 W 188
>sp|P42166|LAP2A_HUMAN Lamina-associated polypeptide 2, isoform alpha OS=Homo sapiens
GN=TMPO PE=1 SV=2
Length = 694
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 98 GSGGGGGGLFDSIGLPQVTSVPPL---SLQAAKEL 129
G+ GGG F I P++++ PPL LQAAK++
Sbjct: 210 GTTPSGGGFFQGISFPEISTRPPLGSTELQAAKKV 244
>sp|Q9QXL8|NDK7_MOUSE Nucleoside diphosphate kinase 7 OS=Mus musculus GN=Nme7 PE=2 SV=1
Length = 395
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 71 PVLASYAKCLAGDILCVWRRVGTPQNGG-----SGGGGGGLFDSIGLPQVTSVPPLSLQA 125
PV+A + L D +C W+R+ P N G + G LF + G+ P A
Sbjct: 176 PVIA--MEILRDDAICEWKRLLGPANSGLSRTDAPGSIRALFGTDGVRNAAHGPDTFASA 233
Query: 126 AKELWIFW 133
A+E+ +F+
Sbjct: 234 AREMELFF 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,762,379
Number of Sequences: 539616
Number of extensions: 3912272
Number of successful extensions: 30023
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 28721
Number of HSP's gapped (non-prelim): 1002
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)