Query psy15424
Match_columns 153
No_of_seqs 46 out of 48
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 20:40:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cn3_F Fragment of coat protei 21.8 45 0.0015 19.7 1.6 9 4-12 2-10 (29)
2 2i7u_A Four-alpha-helix bundle 16.1 43 0.0015 22.7 0.7 7 4-10 29-35 (62)
3 1m4z_A Origin recognition comp 15.1 56 0.0019 27.0 1.3 11 126-136 85-95 (238)
4 2yij_A Phospholipase A1-iigamm 19.7 34 0.0012 29.9 0.0 34 34-76 13-46 (419)
5 2fl7_A Regulatory protein SIR3 15.0 57 0.0019 26.8 1.3 11 126-136 85-95 (232)
6 4ab7_A Protein Arg5,6, mitocho 10.0 59 0.002 28.6 -0.1 7 131-137 430-436 (464)
7 2kzb_A Autophagy-related prote 9.8 2E+02 0.0068 21.7 2.8 19 121-139 63-81 (118)
8 2ayd_A WRKY transcription fact 9.0 1.1E+02 0.0037 21.2 1.0 29 44-83 16-44 (76)
9 1a31_A Protein (topoisomerase 8.9 1.3E+02 0.0044 28.0 1.7 30 21-56 21-51 (591)
10 1euv_A ULP1 protease; SUMO hyd 8.9 2.4E+02 0.0084 21.3 3.0 62 14-81 1-62 (221)
No 1
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=21.78 E-value=45 Score=19.73 Aligned_cols=9 Identities=67% Similarity=1.405 Sum_probs=3.9
Q ss_pred CCCCCCCcc
Q psy15424 4 RGGGGGGER 12 (153)
Q Consensus 4 ~~~~~~~~~ 12 (153)
.||||||..
T Consensus 2 gggggggaa 10 (29)
T 1cn3_F 2 GGGGGGGAA 10 (29)
T ss_dssp CCCCCSTTT
T ss_pred CCCCCCccc
Confidence 344444443
No 2
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=16.15 E-value=43 Score=22.65 Aligned_cols=7 Identities=86% Similarity=1.835 Sum_probs=2.7
Q ss_pred CCCCCCC
Q psy15424 4 RGGGGGG 10 (153)
Q Consensus 4 ~~~~~~~ 10 (153)
.||||||
T Consensus 29 ggggggg 35 (62)
T 2i7u_A 29 GGGGGGG 35 (62)
T ss_dssp SSCSSSC
T ss_pred CCCCchH
Confidence 3333333
No 3
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=15.15 E-value=56 Score=26.96 Aligned_cols=11 Identities=36% Similarity=0.658 Sum_probs=9.0
Q ss_pred cceeEEEecCC
Q psy15424 126 AKELWIFWYGE 136 (153)
Q Consensus 126 aKELWIFWYGe 136 (153)
-=|+|+|||=-
T Consensus 85 ~vei~v~wylR 95 (238)
T 1m4z_A 85 VVELWALTYLR 95 (238)
T ss_dssp EEEEEEEEEEC
T ss_pred eEEEEEEEeec
Confidence 46999999954
No 4
>2yij_A Phospholipase A1-iigamma; hydrolase; 2.00A {Arabidopsis thaliana}
Probab=19.66 E-value=34 Score=29.93 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=17.1
Q ss_pred hhccCCcccccCceeeeeecCCCCCCCCCCCCCCCCchHHHHH
Q psy15424 34 LGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASY 76 (153)
Q Consensus 34 ~~~~~~lTDL~GIKWRkyv~~~~~~~~~~p~~~pL~DPVL~SY 76 (153)
|.-++.++. +||.|....+=-+ ..+|| ||.|+++
T Consensus 13 ~~~~~~~~~----~w~e~~G~~~W~g----lldPl-d~~lr~~ 46 (419)
T 2yij_A 13 LIVTREFAK----RWRDLSGQNHWKG----MLQPL-DQDLREY 46 (419)
Confidence 344455543 6888875333211 23565 5566543
No 5
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=14.99 E-value=57 Score=26.82 Aligned_cols=11 Identities=36% Similarity=0.896 Sum_probs=9.0
Q ss_pred cceeEEEecCC
Q psy15424 126 AKELWIFWYGE 136 (153)
Q Consensus 126 aKELWIFWYGe 136 (153)
-=|+|+|||=-
T Consensus 85 ~vei~v~wylR 95 (232)
T 2fl7_A 85 VVEIWVFSYLR 95 (232)
T ss_dssp CCEEEEEEEEC
T ss_pred eEEEEEEEeec
Confidence 46999999954
No 6
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=10.04 E-value=59 Score=28.59 Aligned_cols=7 Identities=57% Similarity=1.825 Sum_probs=5.2
Q ss_pred EEecCCC
Q psy15424 131 IFWYGEE 137 (153)
Q Consensus 131 IFWYGeE 137 (153)
+||||.+
T Consensus 430 lFw~G~~ 436 (464)
T 4ab7_A 430 LFWYGID 436 (464)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 6788874
No 7
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=9.80 E-value=2e+02 Score=21.66 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=13.8
Q ss_pred ccccccceeEEEecCCCCC
Q psy15424 121 LSLQAAKELWIFWYGEEPD 139 (153)
Q Consensus 121 lSl~~aKELWIFWYGeEPd 139 (153)
+.....||||.|=|--.|.
T Consensus 63 igik~~ke~~~fp~~~~~~ 81 (118)
T 2kzb_A 63 IGIKEYKEYRYFPYALDLE 81 (118)
T ss_dssp CCTTCCEEEEECSCCCCCC
T ss_pred cccCcceEEEEccccCCcc
Confidence 4567899999997754443
No 8
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=9.05 E-value=1.1e+02 Score=21.20 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=20.1
Q ss_pred cCceeeeeecCCCCCCCCCCCCCCCCchHHHHHHHHhhCC
Q psy15424 44 CGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGD 83 (153)
Q Consensus 44 ~GIKWRkyv~~~~~~~~~~p~~~pL~DPVL~SYSRCL~ad 83 (153)
-|-+||||-.+..-+. |-.+||=||-..+
T Consensus 16 DGy~WRKYGQK~ikgs-----------~~PRsYYrCt~~g 44 (76)
T 2ayd_A 16 DGYRWRKYGQKSVKGS-----------PYPRSYYRCSSPG 44 (76)
T ss_dssp CSSCEEEEEEECCTTC-----------SSCEEEEEECSTT
T ss_pred CCchhhhCcccccCCC-----------CCceeEeEcCCCC
Confidence 5899999998766422 2235788887653
No 9
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=8.87 E-value=1.3e+02 Score=28.01 Aligned_cols=30 Identities=40% Similarity=0.589 Sum_probs=9.3
Q ss_pred hHHHHHHHHH-HHHhhccCCcccccCceeeeeecCCC
Q psy15424 21 EEEEEEEVEK-WERLGERGGDTDLCGIKWRKLVHGDS 56 (153)
Q Consensus 21 ~~~~~~~~~~-~~~~~~~~~lTDL~GIKWRkyv~~~~ 56 (153)
+++++|++-+ ||.-.. =.|+||+-|.|.+.
T Consensus 21 ~~~~~~~~~~wwe~~~~------~~~~kW~tLeHnG~ 51 (591)
T 1a31_A 21 PKKEEEQKWKWWEEERY------PEGIKWKFLEHKGP 51 (591)
T ss_dssp --------------------------CCCSCEEECCC
T ss_pred cccchhhhhhcccccCC------CCCcceeEeeecce
Confidence 4455555555 564221 25899999999543
No 10
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=8.86 E-value=2.4e+02 Score=21.25 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=0.0
Q ss_pred CcccccchHHHHHHHHHHHHhhccCCcccccCceeeeeecCCCCCCCCCCCCCCCCchHHHHHHHHhh
Q psy15424 14 GGKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLA 81 (153)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~lTDL~GIKWRkyv~~~~~~~~~~p~~~pL~DPVL~SYSRCL~ 81 (153)
|--+-+...|++++|++.-+-.+...+.+..+|.=++=-..--.++ .=|+|-|+-.|.++|.
T Consensus 1 ~~~~~~l~~~~~~~v~~~l~~~~~~~l~~~~~i~i~~~Dl~~L~~~------~wLND~vI~fy~~~l~ 62 (221)
T 1euv_A 1 GSLVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPR------RWLNDTIIEFFMKYIE 62 (221)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCSSCCEEEEETTEEEEHHHHGGGSTT------CCCBHHHHHHHHHHHH
T ss_pred CCcCCCCCHHHHHHHHHHhcCCCCeeeecCCCeEEEHHHHhhhcCC------CCCCHHHHHHHHHHHH
Done!