Query psy15424
Match_columns 153
No_of_seqs 46 out of 48
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 20:40:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tu9a_ a.1.1.2 (A:) Hypotheti 61.9 1.5 0.00011 29.5 1.6 15 69-83 3-17 (131)
2 d2hfva1 d.58.5.5 (A:23-97) Hyp 13.4 28 0.0021 22.7 0.9 19 69-87 8-28 (75)
3 d1cbya_ d.103.1.1 (A:) Mosquit 10.5 30 0.0022 26.8 0.3 14 124-137 130-143 (227)
4 d1euva_ d.3.1.7 (A:) Ulp1 prot 10.1 97 0.0071 21.5 3.0 59 16-82 3-63 (221)
5 d1wwha1 d.58.7.1 (A:169-249) N 9.9 30 0.0022 21.3 0.1 27 127-153 3-29 (81)
6 d2geca1 b.148.1.1 (A:23-160) N 9.8 49 0.0036 23.8 1.2 11 125-135 61-74 (138)
7 d1ap8a_ d.86.1.1 (A:) Translat 9.7 92 0.0067 22.5 2.9 7 130-136 43-49 (213)
8 d1khca_ b.34.9.2 (A:) DNA meth 9.4 64 0.0047 21.9 1.8 17 126-143 42-58 (137)
9 d1n26a2 b.1.2.1 (A:94-195) Int 9.2 16 0.0011 25.5 -1.7 29 69-97 3-31 (102)
10 d1wj2a_ g.79.1.1 (A:) WRKY DNA 8.8 37 0.0027 21.8 0.2 35 45-92 13-47 (71)
No 1
>d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=61.88 E-value=1.5 Score=29.47 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=12.8
Q ss_pred CchHHHHHHHHhhCC
Q psy15424 69 EDPVLASYAKCLAGD 83 (153)
Q Consensus 69 ~DPVL~SYSRCL~ad 83 (153)
.|+|++||.||...+
T Consensus 3 ~~~v~qs~~r~~~~~ 17 (131)
T d1tu9a_ 3 ADRVMQSYGRCCAST 17 (131)
T ss_dssp HHHHHHHHHHHHTST
T ss_pred hhHHHHHHHhhccch
Confidence 599999999998653
No 2
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=13.36 E-value=28 Score=22.70 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.7
Q ss_pred CchHHHHHHHHh--hCCceeE
Q psy15424 69 EDPVLASYAKCL--AGDILCV 87 (153)
Q Consensus 69 ~DPVL~SYSRCL--~adILCV 87 (153)
+|||+-||++-| .+||=|.
T Consensus 8 nD~v~is~~~aLL~~agI~~~ 28 (75)
T d2hfva1 8 NDAVLLSAVGALLDGADIGHL 28 (75)
T ss_dssp CCHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHhhCCCCEE
Confidence 899999999987 4677665
No 3
>d1cbya_ d.103.1.1 (A:) Mosquitocidal delta-endotoxin CytB {Bacillus thuringiensis, strain Kyushuensis [TaxId: 1428]}
Probab=10.45 E-value=30 Score=26.83 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=10.5
Q ss_pred cccceeEEEecCCC
Q psy15424 124 QAAKELWIFWYGEE 137 (153)
Q Consensus 124 ~~aKELWIFWYGeE 137 (153)
...-|=|||||-+.
T Consensus 130 ~Q~~eawiFw~~~~ 143 (227)
T d1cbya_ 130 TQIDEAWIFWHSLS 143 (227)
T ss_dssp GGTTCTTEEEESCC
T ss_pred cccccceEEEeccc
Confidence 35568899998764
No 4
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.11 E-value=97 Score=21.48 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCCcccccCce--eeeeecCCCCCCCCCCCCCCCCchHHHHHHHHhhC
Q psy15424 16 KVRETEEEEEEEVEKWERLGERGGDTDLCGIK--WRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAG 82 (153)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~lTDL~GIK--WRkyv~~~~~~~~~~p~~~pL~DPVL~SYSRCL~a 82 (153)
-|.+--+++..++.++-.-.++-.+....+|+ .+-+.. -. | ..=|+|-|+-+|.++|+.
T Consensus 3 ~~~~lt~~~~~~~~~~l~~~~~~~~~~~~~~~it~~Dl~~--L~-----~-~~WLnD~iIn~y~~~l~~ 63 (221)
T d1euva_ 3 LVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKT--LA-----P-RRWLNDTIIEFFMKYIEK 63 (221)
T ss_dssp SSCCCCHHHHHHHHHHHTCSSCCEEEEETTEEEEHHHHGG--GS-----T-TCCCBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCCceeeecCCcEEeHHHHhh--cC-----C-CcccCcHHHHHHHHHHHh
Confidence 45677778888888888766666665555543 444433 11 1 135799999999999863
No 5
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.92 E-value=30 Score=21.30 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=20.9
Q ss_pred ceeEEEecCCCCCCCcccchhhhccCC
Q psy15424 127 KELWIFWYGEEPDLSSIVTPELFSSGE 153 (153)
Q Consensus 127 KELWIFWYGeEPdLs~lV~pEL~~~~~ 153 (153)
.+-|||=||=-|+.++.+-......|+
T Consensus 3 ~~~wV~V~G~p~~~~~~il~~F~~~G~ 29 (81)
T d1wwha1 3 DDTWVTVFGFPQASASYILLQFAQYGN 29 (81)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSC
T ss_pred cccEEEEECCChHHHHHHHHHHHhhhh
Confidence 467999999999888777666666664
No 6
>d2geca1 b.148.1.1 (A:23-160) Nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=9.75 E-value=49 Score=23.79 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=8.0
Q ss_pred cccee---EEEecC
Q psy15424 125 AAKEL---WIFWYG 135 (153)
Q Consensus 125 ~aKEL---WIFWYG 135 (153)
..|+| |.|+|-
T Consensus 61 ~r~~lp~~wyFYY~ 74 (138)
T d2geca1 61 RRKPVPDAWYFYYT 74 (138)
T ss_dssp SCEEEEEEEEEEET
T ss_pred ceeeCCCceEEEEe
Confidence 45777 999883
No 7
>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.68 E-value=92 Score=22.53 Aligned_cols=7 Identities=43% Similarity=1.792 Sum_probs=5.9
Q ss_pred EEEecCC
Q psy15424 130 WIFWYGE 136 (153)
Q Consensus 130 WIFWYGe 136 (153)
|.|||-.
T Consensus 43 Wt~wy~~ 49 (213)
T d1ap8a_ 43 WTLWYTK 49 (213)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9999953
No 8
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.44 E-value=64 Score=21.92 Aligned_cols=17 Identities=29% Similarity=0.894 Sum_probs=12.0
Q ss_pred cceeEEEecCCCCCCCcc
Q psy15424 126 AKELWIFWYGEEPDLSSI 143 (153)
Q Consensus 126 aKELWIFWYGeEPdLs~l 143 (153)
....||+|||+ .+.+-+
T Consensus 42 ~~~~~V~fFGd-~~~~wv 58 (137)
T d1khca_ 42 PGMRWVQWFGD-GKFSEI 58 (137)
T ss_dssp TTEEEEEETTT-CCEEEE
T ss_pred CCcEEEEEecC-CCEEEe
Confidence 35789999998 455433
No 9
>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.17 E-value=16 Score=25.47 Aligned_cols=29 Identities=28% Similarity=0.643 Sum_probs=22.1
Q ss_pred CchHHHHHHHHhhCCceeEEeecCCCCCC
Q psy15424 69 EDPVLASYAKCLAGDILCVWRRVGTPQNG 97 (153)
Q Consensus 69 ~DPVL~SYSRCL~adILCVWRR~~~p~~~ 97 (153)
+.|.|+-|-|=-..+|.|-|+-.++|++.
T Consensus 3 E~P~lsC~rKSp~s~v~CEW~p~~~psp~ 31 (102)
T d1n26a2 3 EEPQLSCFRKSPLSNVVCEWGPRSTPSLT 31 (102)
T ss_dssp CCCCCEEEBSSTTSCEEEEECCSSCCCTT
T ss_pred CCcceeEeecCCcccceeeecCCCCCCCC
Confidence 45666666666778999999988887654
No 10
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.76 E-value=37 Score=21.81 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=24.2
Q ss_pred CceeeeeecCCCCCCCCCCCCCCCCchHHHHHHHHhhCCceeEEeecC
Q psy15424 45 GIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVG 92 (153)
Q Consensus 45 GIKWRkyv~~~~~~~~~~p~~~pL~DPVL~SYSRCL~adILCVWRR~~ 92 (153)
|..||||=.+...+. |--+||=||-..+ |.=|+..
T Consensus 13 Gy~WRKYGQK~ikgs-----------~~pRsYYrCt~~~--C~a~K~V 47 (71)
T d1wj2a_ 13 GYRWRKYGQKVVKGN-----------PYPRSYYKCTTPG--CGVRKHV 47 (71)
T ss_dssp SSCBCCCEEECCTTC-----------SSCEEEEEEECSS--CEEEEEE
T ss_pred CcEecccCceeccCC-----------CCceEEEEccccC--CCCcceE
Confidence 889999988766532 1127899998876 6655544
Done!