Your job contains 1 sequence.
>psy15424
MRGRGGGGGGEREGGKVRETEEEEEEEVEKWERLGERGGDTDLCGIKWRKLVHGDSAGTG
YSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPP
LSLQAAKELWIFWYGEEPDLSSIVTPELFSSGE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15424
(153 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003415 - symbol:skd "skuld" species:7227 "Drosoph... 276 2.8e-22 1
UNIPROTKB|F1N4I1 - symbol:LOC100848413 "Uncharacterized p... 112 1.5e-10 2
UNIPROTKB|J9JHV4 - symbol:MED13L "Uncharacterized protein... 112 1.5e-10 2
MGI|MGI:2670178 - symbol:Med13l "mediator complex subunit... 112 1.5e-10 2
UNIPROTKB|Q71F56 - symbol:MED13L "Mediator of RNA polymer... 112 1.5e-10 2
UNIPROTKB|Q9UHV7 - symbol:MED13 "Mediator of RNA polymera... 118 3.0e-10 2
ZFIN|ZDB-GENE-030131-3529 - symbol:med13b "mediator compl... 118 3.6e-10 2
UNIPROTKB|F1MYL8 - symbol:MED13 "Uncharacterized protein"... 115 4.8e-10 2
ZFIN|ZDB-GENE-070627-13 - symbol:med13a "mediator complex... 113 4.9e-10 2
RGD|1304829 - symbol:Med13 "mediator complex subunit 13" ... 115 1.2e-09 2
MGI|MGI:3029632 - symbol:Med13 "mediator complex subunit ... 115 1.3e-09 2
UNIPROTKB|F1P413 - symbol:MED13 "Uncharacterized protein"... 86 9.7e-07 2
WB|WBGene00002295 - symbol:let-19 species:6239 "Caenorhab... 125 3.4e-06 1
>FB|FBgn0003415 [details] [associations]
symbol:skd "skuld" species:7227 "Drosophila melanogaster"
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISS] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=ISS;IDA;NAS] [GO:0016592 "mediator complex"
evidence=ISS;IDA;NAS;IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045165 "cell fate commitment" evidence=IGI] [GO:0045498 "sex
comb development" evidence=IGI;IMP] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=NAS] [GO:0004252 "serine-type
endopeptidase activity" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0048749 "compound eye
development" evidence=IMP] [GO:0022416 "chaeta development"
evidence=IMP] [GO:0036011 "imaginal disc-derived leg segmentation"
evidence=IMP] [GO:0048190 "wing disc dorsal/ventral pattern
formation" evidence=IGI] [GO:0030177 "positive regulation of Wnt
receptor signaling pathway" evidence=IMP] InterPro:IPR009401
Pfam:PF06333 GO:GO:0048190 EMBL:AE014296 GO:GO:0022416
GO:GO:0009790 GO:GO:0030177 GO:GO:0045165 GO:GO:0036011
GO:GO:0048749 GO:GO:0045498 GO:GO:0016592 GO:GO:0001104
eggNOG:NOG304462 KO:K15164 InterPro:IPR021643 Pfam:PF11597
GeneTree:ENSGT00390000013680 EMBL:AF227214 EMBL:AF227215
EMBL:AF324425 EMBL:AF226855 EMBL:AY061361 RefSeq:NP_524653.1
RefSeq:NP_730590.1 UniGene:Dm.3624 DIP:DIP-29988N IntAct:Q7KTX8
MINT:MINT-4509350 STRING:Q7KTX8 PaxDb:Q7KTX8 PRIDE:Q7KTX8
EnsemblMetazoa:FBtr0078328 EnsemblMetazoa:FBtr0078329 GeneID:43906
KEGG:dme:Dmel_CG9936 CTD:43906 FlyBase:FBgn0003415
InParanoid:Q7KTX8 OrthoDB:EOG4M906B GenomeRNAi:43906 NextBio:836336
Bgee:Q7KTX8 Uniprot:Q7KTX8
Length = 2618
Score = 276 (102.2 bits), Expect = 2.8e-22, P = 2.8e-22
Identities = 56/108 (51%), Positives = 69/108 (63%)
Query: 41 TDLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNXXXX 100
TDLCGIKWRK V+G+ S+PL DP+L SY++C+ D+LCVWRRV + +
Sbjct: 24 TDLCGIKWRKFVNGERPNAS----SDPLADPILRSYSRCIQADMLCVWRRVQSTKTDHAD 79
Query: 101 XXXXXLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDLSSIVTPEL 148
F+ +V PPLSL AAKELWIFWYGEEPDLS +V EL
Sbjct: 80 PNALT-FEMTTSTKVH--PPLSLAAAKELWIFWYGEEPDLSELVDAEL 124
>UNIPROTKB|F1N4I1 [details] [associations]
symbol:LOC100848413 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR009401 Pfam:PF06333 GO:GO:0016592
GO:GO:0001104 OMA:MNIFKDR InterPro:IPR021643 Pfam:PF11597
GeneTree:ENSGT00390000013680 EMBL:DAAA02045361 IPI:IPI00710992
Ensembl:ENSBTAT00000002459 Uniprot:F1N4I1
Length = 2189
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR
Sbjct: 6 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 54
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 61 KELWIFWWGDEPNLVGVIHHEL 82
Score = 36 (17.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 117 SVPPLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
++ P SL + L + YG D++ IV PE
Sbjct: 1373 TISPFSLPFWERLLLDPYGGHRDVAYIVVCPE 1404
Score = 32 (16.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 110 IGLPQVTSVP 119
+G+ Q+TS+P
Sbjct: 1863 VGIVQMTSLP 1872
>UNIPROTKB|J9JHV4 [details] [associations]
symbol:MED13L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR009401 Pfam:PF06333 GO:GO:0016592
GO:GO:0001104 OMA:MNIFKDR InterPro:IPR021643 Pfam:PF11597
GeneTree:ENSGT00390000013680 EMBL:AAEX03014704 EMBL:AAEX03014705
EMBL:AAEX03014706 EMBL:AAEX03014707 Ensembl:ENSCAFT00000045900
Uniprot:J9JHV4
Length = 2194
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR
Sbjct: 10 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 58
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 65 KELWIFWWGDEPNLVGVIHHEL 86
Score = 36 (17.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 117 SVPPLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
++ P SL + L + YG D++ IV PE
Sbjct: 1378 TISPFSLPFWERLLLDPYGGHRDVAYIVVCPE 1409
Score = 33 (16.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 110 IGLPQVTSVP 119
IG+ Q+TS+P
Sbjct: 1868 IGIVQMTSLP 1877
>MGI|MGI:2670178 [details] [associations]
symbol:Med13l "mediator complex subunit 13-like"
species:10090 "Mus musculus" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IC] [GO:0016592 "mediator complex" evidence=IDA]
InterPro:IPR009401 Pfam:PF06333 MGI:MGI:2670178
Reactome:REACT_127416 GO:GO:0006366 Reactome:REACT_27166
GO:GO:0016592 GO:GO:0001104 CTD:23389 eggNOG:NOG304462
HOVERGEN:HBG058069 KO:K15164 OrthoDB:EOG41G336 ChiTaRS:MED13L
InterPro:IPR021643 Pfam:PF11597 EMBL:AY338464 EMBL:AK142391
EMBL:AK162842 EMBL:AK122419 EMBL:BC052320 IPI:IPI00420457
RefSeq:NP_766012.3 UniGene:Mm.206238 STRING:Q6JPI3
PhosphoSite:Q6JPI3 PRIDE:Q6JPI3 GeneID:76199 KEGG:mmu:76199
UCSC:uc008zgl.1 HOGENOM:HOG000012893 InParanoid:Q6JPI3
NextBio:344755 CleanEx:MM_MED13L Genevestigator:Q6JPI3
GermOnline:ENSMUSG00000018076 Uniprot:Q6JPI3
Length = 2207
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 74
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 81 KELWIFWWGDEPNLVGVIHHEL 102
Score = 38 (18.4 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 109 SIGLPQVTSVPP 120
S GLP +S+PP
Sbjct: 445 SAGLPSSSSLPP 456
Score = 36 (17.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 117 SVPPLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
++ P SL + L + YG D++ IV PE
Sbjct: 1394 TISPFSLPFWERLLLEPYGGHRDVAYIVVCPE 1425
>UNIPROTKB|Q71F56 [details] [associations]
symbol:MED13L "Mediator of RNA polymerase II transcription
subunit 13-like" species:9606 "Homo sapiens" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] InterPro:IPR009401
Pfam:PF06333 Reactome:REACT_111045 GO:GO:0016592 GO:GO:0001104
Orphanet:860 EMBL:AF515599 EMBL:AY338463 EMBL:BC130422
EMBL:AL133033 EMBL:AL137644 EMBL:CR749332 EMBL:AB028948
EMBL:AK023837 IPI:IPI00400834 PIR:T42707 RefSeq:NP_056150.1
UniGene:Hs.603766 UniGene:Hs.715095 ProteinModelPortal:Q71F56
IntAct:Q71F56 STRING:Q71F56 PhosphoSite:Q71F56 DMDM:74749769
PaxDb:Q71F56 PRIDE:Q71F56 Ensembl:ENST00000281928 GeneID:23389
KEGG:hsa:23389 UCSC:uc001tvw.3 CTD:23389 GeneCards:GC12M116396
HGNC:HGNC:22962 HPA:HPA039445 MIM:608771 MIM:608808
neXtProt:NX_Q71F56 PharmGKB:PA162395233 eggNOG:NOG304462
HOVERGEN:HBG058069 InParanoid:Q71F56 KO:K15164 OMA:MNIFKDR
OrthoDB:EOG41G336 PhylomeDB:Q71F56 ChiTaRS:MED13L GenomeRNAi:23389
NextBio:45511 ArrayExpress:Q71F56 Bgee:Q71F56 CleanEx:HS_MED13L
Genevestigator:Q71F56 GermOnline:ENSG00000123066 InterPro:IPR021643
Pfam:PF11597 Uniprot:Q71F56
Length = 2210
Score = 112 (44.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
+L GIKWR+ G G + +DP+L S+ +CL ++LCVWRR
Sbjct: 26 ELTGIKWRRYNFGGHGDCGPIISAPAQDDPILLSFIRCLQANLLCVWRR 74
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
KELWIFW+G+EP+L ++ EL
Sbjct: 81 KELWIFWWGDEPNLVGVIHHEL 102
Score = 36 (17.7 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 117 SVPPLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
++ P SL + L + YG D++ IV PE
Sbjct: 1395 TISPFSLPFWERLLLDPYGGHRDVAYIVVCPE 1426
Score = 33 (16.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 110 IGLPQVTSVP 119
IG+ Q+TS+P
Sbjct: 1884 IGIVQMTSLP 1893
>UNIPROTKB|Q9UHV7 [details] [associations]
symbol:MED13 "Mediator of RNA polymerase II transcription
subunit 13" species:9606 "Homo sapiens" [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=NAS] [GO:0046966 "thyroid hormone receptor
binding" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0030521 "androgen receptor signaling pathway"
evidence=IDA] [GO:0003712 "transcription cofactor activity"
evidence=IDA] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IDA] [GO:0004872 "receptor activity"
evidence=IDA] [GO:0016592 "mediator complex" evidence=IDA]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=IDA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IDA;TAS] [GO:0042809 "vitamin
D receptor binding" evidence=NAS] [GO:0003713 "transcription
coactivator activity" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR009401 Pfam:PF06333 Reactome:REACT_111045 GO:GO:0030521
GO:GO:0045944 GO:GO:0004872 GO:GO:0006367 GO:GO:0046966
EMBL:CH471179 GO:GO:0030374 GO:GO:0016592 GO:GO:0001104
EMBL:AC060798 eggNOG:NOG304462 HOVERGEN:HBG058069 KO:K15164
InterPro:IPR021643 Pfam:PF11597 HOGENOM:HOG000012893 GO:GO:0042809
EMBL:AF117754 EMBL:AC008158 EMBL:AC018628 EMBL:BC140891
EMBL:AB011165 IPI:IPI00021388 PIR:T01238 RefSeq:NP_005112.2
UniGene:Hs.282678 ProteinModelPortal:Q9UHV7 DIP:DIP-31468N
IntAct:Q9UHV7 MINT:MINT-4329245 STRING:Q9UHV7 PhosphoSite:Q9UHV7
DMDM:166214951 PaxDb:Q9UHV7 PRIDE:Q9UHV7 Ensembl:ENST00000397786
GeneID:9969 KEGG:hsa:9969 UCSC:uc002izo.3 CTD:9969
GeneCards:GC17M060019 H-InvDB:HIX0014059 HGNC:HGNC:22474 MIM:603808
neXtProt:NX_Q9UHV7 PharmGKB:PA162395168 OMA:EPTVYVG
OrthoDB:EOG4BRWJS ChiTaRS:MED13 GenomeRNAi:9969 NextBio:37622
Bgee:Q9UHV7 CleanEx:HS_MED13 Genevestigator:Q9UHV7
GermOnline:ENSG00000108510 Uniprot:Q9UHV7
Length = 2174
Score = 118 (46.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
DL GIKW+K V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKKYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 75
Score = 73 (30.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P + ++ +L
Sbjct: 78 RELWIFWWGEDPSFADLIHHDL 99
Score = 34 (17.0 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 111 GLPQVTSVPPLSLQAAKEL 129
G VTSV L +Q K L
Sbjct: 647 GQESVTSVTELMVQCKKPL 665
Score = 34 (17.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 120 PLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
P +L + L + YG + D++ +V PE
Sbjct: 1349 PFALPYWERLMLEPYGSQRDIAYVVLCPE 1377
Score = 32 (16.3 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S ++ P+ S+G
Sbjct: 1918 EPQGSFVIMPDSVSTG 1933
>ZFIN|ZDB-GENE-030131-3529 [details] [associations]
symbol:med13b "mediator complex subunit 13b"
species:7955 "Danio rerio" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009401 Pfam:PF06333 ZFIN:ZDB-GENE-030131-3529
GO:GO:0016592 GO:GO:0001104 InterPro:IPR021643 Pfam:PF11597
GeneTree:ENSGT00390000013680 EMBL:CR388124 EMBL:CR848757
EMBL:CU468253 IPI:IPI00504515 Ensembl:ENSDART00000110267
OMA:WSACPHL ArrayExpress:F1R9P4 Bgee:F1R9P4 Uniprot:F1R9P4
Length = 2102
Score = 118 (46.6 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
DL GIKW+ V G ++ P +E EDP+L S+++CL D+L VWRR TP
Sbjct: 24 DLTGIKWKCFVWQGPTSSPILFPVTE--EDPILCSFSRCLKADVLSVWRRHQTP 75
Score = 72 (30.4 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + +V +L
Sbjct: 78 RELWIFWWGDDPNFAELVHHDL 99
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S ++ P+ S+G
Sbjct: 1861 EPQASFVIMPDSVSTG 1876
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 111 GLPQVTSVPPLSLQAAK 127
G+ VT PP S + A+
Sbjct: 319 GISSVTLTPPTSPEEAQ 335
>UNIPROTKB|F1MYL8 [details] [associations]
symbol:MED13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030521
"androgen receptor signaling pathway" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0004872 "receptor activity" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR009401 Pfam:PF06333 GO:GO:0030521 GO:GO:0045944
GO:GO:0004872 GO:GO:0003713 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 InterPro:IPR021643 Pfam:PF11597
GeneTree:ENSGT00390000013680 OMA:EPTVYVG EMBL:DAAA02048344
IPI:IPI01001048 Ensembl:ENSBTAT00000035470 Uniprot:F1MYL8
Length = 2156
Score = 115 (45.5 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 5 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 56
Score = 74 (31.1 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+GE+P+ + ++ +L
Sbjct: 59 RELWIFWWGEDPNFADLIHHDL 80
Score = 34 (17.0 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 111 GLPQVTSVPPLSLQAAKEL 129
G VTSV L +Q K L
Sbjct: 628 GQESVTSVTELMVQCKKPL 646
Score = 34 (17.0 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 120 PLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
P +L + L + YG + D++ +V PE
Sbjct: 1330 PFALPYWERLMLEPYGSQRDIAYVVLCPE 1358
Score = 32 (16.3 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S ++ P+ S+G
Sbjct: 1900 EPQGSFVIMPDSVSTG 1915
>ZFIN|ZDB-GENE-070627-13 [details] [associations]
symbol:med13a "mediator complex subunit 13a"
species:7955 "Danio rerio" [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] InterPro:IPR009401
Pfam:PF06333 ZFIN:ZDB-GENE-070627-13 GO:GO:0016592 GO:GO:0001104
InterPro:IPR021643 Pfam:PF11597 GeneTree:ENSGT00390000013680
EMBL:CR925779 EMBL:BX000486 IPI:IPI00997404
Ensembl:ENSDART00000134491 ArrayExpress:E9QD13 Bgee:E9QD13
Uniprot:E9QD13
Length = 2175
Score = 113 (44.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRR 90
DL GIKW++ V G + P +E EDP+L S+++CL D+L VWRR
Sbjct: 24 DLTGIKWKRYVWQGPISAPMLFPVTE--EDPILCSFSRCLKSDVLSVWRR 71
Score = 76 (31.8 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 124 QAAKELWIFWYGEEPDLSSIVTPEL 148
Q +ELW+FW+G++P+ + ++ EL
Sbjct: 75 QGRRELWLFWWGDDPNFADLIHHEL 99
Score = 33 (16.7 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 110 IGLPQVTSVP 119
+GL Q+TS+P
Sbjct: 1850 LGLVQMTSLP 1859
Score = 32 (16.3 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S ++ P+ S+G
Sbjct: 1920 EPQGSFVIMPDSVSTG 1935
>RGD|1304829 [details] [associations]
symbol:Med13 "mediator complex subunit 13" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0004872 "receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0016592 "mediator complex" evidence=IEA;ISO]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=ISO] [GO:0030521 "androgen receptor signaling
pathway" evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA;ISO] InterPro:IPR009401 Pfam:PF06333 RGD:1304829
GO:GO:0030521 GO:GO:0045944 GO:GO:0004872 GO:GO:0003713
GO:GO:0006367 GO:GO:0016592 GO:GO:0001104 InterPro:IPR021643
Pfam:PF11597 GeneTree:ENSGT00390000013680 IPI:IPI00764037
Ensembl:ENSRNOT00000035280 Uniprot:F1LXU0
Length = 2155
Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 8 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 59
Score = 70 (29.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 62 RELWIFWWGKDPNFADLIHHDL 83
Score = 35 (17.4 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 120 PLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
P +L ++L + YG + D++ +V PE
Sbjct: 1332 PFALPYWEKLMLEPYGSQRDIAYVVLCPE 1360
Score = 34 (17.0 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 111 GLPQVTSVPPLSLQAAKEL 129
G VTSV L +Q K L
Sbjct: 631 GQESVTSVTELMVQCKKPL 649
Score = 32 (16.3 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S ++ P+ S+G
Sbjct: 1899 EPQGSFVIMPDSVSTG 1914
>MGI|MGI:3029632 [details] [associations]
symbol:Med13 "mediator complex subunit 13" species:10090
"Mus musculus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=ISO] [GO:0003712 "transcription
cofactor activity" evidence=ISO] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0004872 "receptor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISO] [GO:0016592 "mediator
complex" evidence=ISO;IDA] [GO:0030518 "intracellular steroid
hormone receptor signaling pathway" evidence=ISO] [GO:0030521
"androgen receptor signaling pathway" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046966 "thyroid hormone
receptor binding" evidence=ISO] InterPro:IPR009401 Pfam:PF06333
MGI:MGI:3029632 GO:GO:0030521 GO:GO:0045944 GO:GO:0004872
Reactome:REACT_127416 GO:GO:0003713 GO:GO:0006367
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 EMBL:AL592065
eggNOG:NOG304462 HOVERGEN:HBG058069 KO:K15164 InterPro:IPR021643
Pfam:PF11597 HOGENOM:HOG000012893 GeneTree:ENSGT00390000013680
CTD:9969 OMA:EPTVYVG OrthoDB:EOG4BRWJS ChiTaRS:MED13 EMBL:AL596256
EMBL:AK037303 EMBL:AK129168 IPI:IPI00118296 RefSeq:NP_001074400.1
UniGene:Mm.341886 HSSP:O15034 IntAct:Q5SWW4 STRING:Q5SWW4
PhosphoSite:Q5SWW4 PaxDb:Q5SWW4 PRIDE:Q5SWW4 DNASU:327987
Ensembl:ENSMUST00000043624 GeneID:327987 KEGG:mmu:327987
UCSC:uc007ksk.1 InParanoid:Q5SWW4 NextBio:398058 Bgee:Q5SWW4
CleanEx:MM_MED13 Genevestigator:Q5SWW4 Uniprot:Q5SWW4
Length = 2171
Score = 115 (45.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 42 DLCGIKWRKLV-HGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
DL GIKW++ V G ++ P +E EDP+L+S+++CL D+L VWRR P
Sbjct: 24 DLTGIKWKRYVWQGPTSAPILFPVTE--EDPILSSFSRCLKADVLGVWRRDQRP 75
Score = 70 (29.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 78 RELWIFWWGKDPNFADLIHHDL 99
Score = 35 (17.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 120 PLSLQAAKELWIFWYGEEPDLSSIVT-PE 147
P +L ++L + YG + D++ +V PE
Sbjct: 1348 PFALPYWEKLMLEPYGSQRDIAYVVLCPE 1376
Score = 34 (17.0 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 111 GLPQVTSVPPLSLQAAKEL 129
G VTSV L +Q K L
Sbjct: 647 GQESVTSVTELMVQCKKPL 665
Score = 32 (16.3 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S ++ P+ S+G
Sbjct: 1915 EPQGSFVIMPDSVSTG 1930
>UNIPROTKB|F1P413 [details] [associations]
symbol:MED13 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0004872 "receptor activity"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0030521 "androgen receptor signaling
pathway" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
InterPro:IPR009401 Pfam:PF06333 GO:GO:0030521 GO:GO:0045944
GO:GO:0004872 GO:GO:0003713 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 InterPro:IPR021643 Pfam:PF11597
GeneTree:ENSGT00390000013680 OMA:EPTVYVG EMBL:AADN02025783
IPI:IPI00580467 Ensembl:ENSGALT00000008405 Uniprot:F1P413
Length = 2145
Score = 86 (35.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 69 EDPVLASYAKCLAGDILCVWRRVGTP 94
EDP+L+S+++CL D+L VWRR P
Sbjct: 12 EDPILSSFSRCLKADVLSVWRRDQRP 37
Score = 71 (30.1 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 127 KELWIFWYGEEPDLSSIVTPEL 148
+ELWIFW+G++P+ + ++ +L
Sbjct: 40 RELWIFWWGDDPNFADLIHHDL 61
Score = 33 (16.7 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 137 EPDLSSIVTPELFSSG 152
EP S I+ P+ S+G
Sbjct: 1889 EPQGSFIIMPDSVSTG 1904
Score = 33 (16.7 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 111 GLPQVTSVPPLSLQAAKEL 129
G +TSV L +Q K L
Sbjct: 614 GQENITSVTELMVQCRKPL 632
>WB|WBGene00002295 [details] [associations]
symbol:let-19 species:6239 "Caenorhabditis elegans"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016592 "mediator
complex" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] InterPro:IPR009401
Pfam:PF06333 GO:GO:0009792 GO:GO:0002009 GO:GO:0018996
GO:GO:0010171 GO:GO:0040027 GO:GO:0016592 GO:GO:0001104 KO:K15164
InterPro:IPR021643 Pfam:PF11597 EMBL:AB223006 EMBL:Z66497
EMBL:Z68314 PIR:T20566 RefSeq:NP_495866.2 UniGene:Cel.14777
ProteinModelPortal:Q93442 IntAct:Q93442 STRING:Q93442 PaxDb:Q93442
EnsemblMetazoa:K08F8.6 GeneID:174402 KEGG:cel:CELE_K08F8.6
UCSC:K08F8.6 CTD:174402 WormBase:K08F8.6 eggNOG:NOG282095
GeneTree:ENSGT00390000013680 InParanoid:Q93442 OMA:KENEQYP
NextBio:883886 Uniprot:Q93442
Length = 2862
Score = 125 (49.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 36/99 (36%), Positives = 49/99 (49%)
Query: 42 DLCGIKWRKLVHGDSAGTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTPQNXXXXX 101
+L GIKW+ +A G + + D VL +Y+KCL ILC WRR P
Sbjct: 41 ELPGIKWKCYRTKPNAPRGVALTA----DFVLKAYSKCLLDGILCTWRRKPLPPT----- 91
Query: 102 XXXXLFDSIGLPQVTSVPPLSLQAAKELWIFWYGEEPDL 140
D+ P++T+ S A KELW+FWY +EP L
Sbjct: 92 ------DNKETPKLTN---FSNDAPKELWVFWYDDEPAL 121
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.138 0.447 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 153 108 0.00091 102 3 11 22 0.36 31
29 0.40 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 591 (63 KB)
Total size of DFA: 138 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.25u 0.08s 10.33t Elapsed: 00:00:02
Total cpu time: 10.25u 0.08s 10.33t Elapsed: 00:00:02
Start: Thu Aug 15 11:10:39 2013 End: Thu Aug 15 11:10:41 2013