RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15424
         (153 letters)



>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
           chain {Escherichia coli [TaxId: 562]}
          Length = 509

 Score = 26.6 bits (58), Expect = 1.5
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 112 LPQVTSVPPLSLQAAKE--LWIFWYGEEPDLSSIVTP 146
           LP V  VPPLS   +      +   G  PD+ S+  P
Sbjct: 350 LPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIP 386


>d1ioaa_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
           {Kidney bean (Phaseolus vulgaris), G02771, arcelin-5a
           [TaxId: 3885]}
          Length = 228

 Score = 25.9 bits (56), Expect = 2.0
 Identities = 8/74 (10%), Positives = 18/74 (24%), Gaps = 7/74 (9%)

Query: 72  VLASYAKCLAGDILCVWRRVGTPQNGGSGGGGGGLFDSIGLPQVTSVPPLSLQAAKELWI 131
           ++ +  + ++   L                  G    +   P   +V       A     
Sbjct: 74  IIRAKNQSISAYGLAFALVPVNSPPQKKQEFLGIFNTNNPEPNARTV-------AVVFNT 126

Query: 132 FWYGEEPDLSSIVT 145
           F    + D + I  
Sbjct: 127 FKNRIDFDKNFIKP 140


>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 245

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 10  GEREGGKVRETEEEEEEEVEKWER 33
           GE   G+     ++  EE EK+ +
Sbjct: 217 GELTNGRHEIVPKDIREEAEKYAK 240


>d2opla1 d.227.1.1 (A:4-185) Hypothetical protein GSU2788 {Geobacter
           sulfurreducens [TaxId: 35554]}
          Length = 182

 Score = 24.2 bits (52), Expect = 6.6
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 5/37 (13%)

Query: 58  GTGYSPGSEPLEDPVLASYAKCLAGDILCVWRRVGTP 94
             G +P      + +L + + CL   ++      G  
Sbjct: 76  NRGANP-----VEYLLVALSGCLTTSLVAHAAARGIA 107


>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain,
          domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 23.7 bits (51), Expect = 7.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 67 PLEDPVLASYAKCLAGDILCVWRRVGTP 94
          P E+P L+ + K    +++C W    TP
Sbjct: 1  PPEEPQLSCFRKSPLSNVVCEWGPRSTP 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 644,481
Number of extensions: 29618
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 8
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.0 bits)