Query psy15426
Match_columns 251
No_of_seqs 125 out of 1103
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 20:46:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10447 HflBKC-binding inner 100.0 4E-42 8.7E-47 295.8 26.9 202 29-240 16-218 (219)
2 KOG1629|consensus 100.0 1.2E-42 2.7E-47 287.3 20.5 229 11-249 6-234 (235)
3 COG0670 Integral membrane prot 100.0 3.2E-38 6.9E-43 274.3 28.8 212 27-242 17-233 (233)
4 cd06181 BI-1-like BAX inhibito 100.0 3.4E-38 7.3E-43 271.3 28.2 205 30-238 2-212 (212)
5 PF01027 Bax1-I: Inhibitor of 100.0 4.7E-33 1E-37 237.1 25.7 200 31-235 1-205 (205)
6 KOG2322|consensus 100.0 8.4E-33 1.8E-37 235.9 13.8 194 24-223 37-237 (237)
7 KOG1630|consensus 99.9 3.7E-24 8.1E-29 183.7 14.9 220 13-240 95-334 (336)
8 PF12811 BaxI_1: Bax inhibitor 99.8 1.2E-17 2.5E-22 147.7 25.9 208 26-240 51-273 (274)
9 COG4760 Predicted membrane pro 99.6 8E-14 1.7E-18 117.2 18.0 224 11-241 31-276 (276)
10 KOG3488|consensus 89.4 4 8.7E-05 29.0 7.8 55 179-234 8-73 (81)
11 PF11808 DUF3329: Domain of un 82.9 3.4 7.3E-05 30.6 5.1 61 163-226 15-75 (90)
12 PTZ00201 amastin surface glyco 53.5 7.6 0.00017 33.1 1.5 31 221-251 161-192 (192)
13 PF05975 EcsB: Bacterial ABC t 48.9 2.3E+02 0.0049 26.4 23.4 16 216-231 224-239 (386)
14 PF06210 DUF1003: Protein of u 45.3 58 0.0013 25.0 5.1 59 185-246 8-66 (108)
15 KOG3103|consensus 44.7 1.5E+02 0.0033 26.1 8.1 52 123-176 144-195 (249)
16 PF09925 DUF2157: Predicted me 42.8 1.7E+02 0.0037 23.2 14.6 41 15-57 15-55 (145)
17 COG1030 NfeD Membrane-bound se 37.6 3.1E+02 0.0067 26.4 9.6 62 134-201 266-327 (436)
18 COG0530 ECM27 Ca2+/Na+ antipor 36.1 3.1E+02 0.0067 25.1 9.3 20 186-205 135-154 (320)
19 PF06123 CreD: Inner membrane 35.8 4.1E+02 0.0088 25.6 13.0 26 174-199 398-423 (430)
20 PRK10245 adrA diguanylate cycl 35.3 3.6E+02 0.0078 24.8 18.6 24 32-55 31-54 (366)
21 PF14038 YqzE: YqzE-like prote 34.3 10 0.00023 25.5 -0.5 13 238-250 21-33 (54)
22 PF11744 ALMT: Aluminium activ 33.3 4.3E+02 0.0094 25.1 11.5 40 131-172 47-86 (406)
23 PRK10591 hypothetical protein; 32.9 37 0.00079 25.4 2.1 12 225-236 61-72 (92)
24 PRK13718 conjugal transfer pro 32.5 98 0.0021 22.5 4.2 37 210-246 40-81 (84)
25 PF12597 DUF3767: Protein of u 32.2 2E+02 0.0044 22.4 6.4 52 153-204 40-94 (118)
26 PF14147 Spore_YhaL: Sporulati 31.6 1.1E+02 0.0024 20.4 4.0 26 181-206 4-29 (52)
27 PF15099 PIRT: Phosphoinositid 29.0 20 0.00043 28.4 0.2 10 241-250 108-117 (129)
28 KOG1629|consensus 27.0 4.2E+02 0.009 22.9 7.9 28 224-251 202-233 (235)
29 PF07214 DUF1418: Protein of u 26.2 63 0.0014 24.4 2.4 8 227-234 63-70 (96)
30 PRK00145 putative inner membra 25.7 88 0.0019 27.0 3.7 36 214-249 187-222 (223)
31 PF05884 ZYG-11_interact: Inte 25.1 5.3E+02 0.012 23.5 16.9 81 32-115 100-187 (299)
32 COG4872 Predicted membrane pro 25.1 5.8E+02 0.012 23.9 15.3 25 4-30 113-137 (394)
33 COG4243 Predicted membrane pro 24.9 4E+02 0.0086 22.0 9.4 45 181-237 101-145 (156)
34 PF01184 Grp1_Fun34_YaaH: GPR1 24.8 4.4E+02 0.0095 22.5 11.2 19 158-176 57-75 (211)
35 COG4331 Predicted membrane pro 22.6 3E+02 0.0065 22.5 5.8 45 187-241 112-157 (167)
36 PRK02984 sspO acid-soluble spo 22.5 25 0.00055 22.8 -0.2 10 238-247 39-48 (49)
37 TIGR00997 ispZ intracellular s 22.4 4.7E+02 0.01 21.9 14.8 15 149-163 72-86 (178)
38 PF11044 TMEMspv1-c74-12: Plec 22.3 85 0.0018 20.3 2.1 13 185-197 14-26 (49)
39 PF14256 YwiC: YwiC-like prote 22.0 4E+02 0.0086 21.0 14.7 47 94-146 58-104 (129)
40 KOG2422|consensus 21.8 37 0.0008 33.8 0.6 11 238-248 89-99 (665)
41 COG0659 SUL1 Sulfate permease 21.2 8.1E+02 0.018 24.2 12.3 125 98-226 257-397 (554)
42 PF06123 CreD: Inner membrane 20.4 7.7E+02 0.017 23.7 13.3 27 24-50 286-312 (430)
43 PF03348 Serinc: Serine incorp 20.2 7.7E+02 0.017 23.6 9.6 78 120-197 72-152 (429)
No 1
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=100.00 E-value=4e-42 Score=295.81 Aligned_cols=202 Identities=22% Similarity=0.331 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Q psy15426 29 STKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGIG 108 (251)
Q Consensus 29 ~~r~fl~kvY~~l~~~l~~ta~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~l~~ft~~~G~~ 108 (251)
.+++|+||||.+++.+++.+++++++++..+. +.+..++.+++.+++.+.... .+++|.|+.++.+||.++|++
T Consensus 16 ~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~~--~~~~~~~~~~~~~gl~~~~~~----~~~~~~~~~llf~fT~~~G~~ 89 (219)
T PRK10447 16 STHKVLRNTYFLLSLTLAFSAITATASTVLML--PSPGLILTLVGMYGLMFLTYK----TANKPTGILSAFAFTGFLGYI 89 (219)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999874222 112224555666666665433 246899999999999999999
Q ss_pred HHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q psy15426 109 LGPLLEMAIVV-NPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDVTLYLG 187 (251)
Q Consensus 109 ~g~~~~~~~~~-~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~~g 187 (251)
+||++.++... +|++|.+|+.+|+++|++++++++++| ||++++|++++++++++++.+++|+|++++.++.+++++|
T Consensus 90 lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a~~tk-~Dfs~lg~~L~~~l~~li~~~l~~~F~~s~~~~~~~s~~g 168 (219)
T PRK10447 90 LGPILNTYLSAGMGDVIALALGGTALVFFCCSAYVLTTR-KDMSFLGGMLMAGIVVVLIGMVANIFLQLPALHLAISAVF 168 (219)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999765443 679999999999999999999999887 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy15426 188 LVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVLIILHSKEV 240 (251)
Q Consensus 188 v~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL~il~~~~~ 240 (251)
+++||+|++||||+|++ .++|||+.||++||+|++|+|+++|||++.+++
T Consensus 169 ~llfsgyilyDTq~Ii~---~g~~dyi~aAl~LYlDiinlFl~lL~il~~~~~ 218 (219)
T PRK10447 169 ILISSGAILFETSNIIH---GGETNYIRATVSLYVSLYNIFVSLLSILGFASR 218 (219)
T ss_pred HHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 99999999999999996 368999999999999999999999999976554
No 2
>KOG1629|consensus
Probab=100.00 E-value=1.2e-42 Score=287.32 Aligned_cols=229 Identities=41% Similarity=0.746 Sum_probs=210.7
Q ss_pred cccchhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy15426 11 VSSVFKNFNKAFRTKVDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINS 90 (251)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~r~fl~kvY~~l~~~l~~ta~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~~l~~~~~~~~~ 90 (251)
.+|++|.+.|+ ++.+|.+|+|++|||..++.++.++|.++|+.+.++. .+ .++.++.+++++|+.+.|..
T Consensus 6 ~~~~fd~l~n~--~~~sP~vq~HLkkvY~tl~~~~~asA~GAylhM~~ni--gG---~lsalg~l~~miwl~~~py~--- 75 (235)
T KOG1629|consen 6 RKWSFDALLNF--SHISPAVQNHLKKVYLTLALALFASAAGAYLHMVWNI--GG---LLSALGSLGLMIWLMFTPYE--- 75 (235)
T ss_pred chhhHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhc--cc---hHHHHHHHHHHHHHhCCCCc---
Confidence 68899999999 9999999999999999999999999999999985442 22 57888999999999988765
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHH
Q psy15426 91 NRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLA 170 (251)
Q Consensus 91 ~~~~~~~l~~ft~~~G~~~g~~~~~~~~~~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~ 170 (251)
+..++.++.+|+++.|.++||.+.+++..||+++.+|+.+|+++|.++|+.|...+||.+.++|+.|..++..+...++.
T Consensus 76 hk~rl~lL~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~s~~s~l~wl~l~ 155 (235)
T KOG1629|consen 76 HKTRLGLLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLSSGLSLLLWLSLA 155 (235)
T ss_pred cchhHHHHHHHHHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33378899999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhhcc
Q psy15426 171 NLFFGSKLLFDVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVLIILHSKEVEEKKKSNKS 249 (251)
Q Consensus 171 ~~f~~~~~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL~il~~~~~~~~~~~~~~ 249 (251)
|.|++|.+..-.-.++|+++|++|+++|||.|+++++.||.||+.||+.||.|++.+|.++|.|+..++.+|++||+|+
T Consensus 156 n~~fgS~~v~~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~~~~dK~~rk~~k 234 (235)
T KOG1629|consen 156 NSFFGSIWVFKFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAMNEADKKNRKERK 234 (235)
T ss_pred HHHhhHHHHHHHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhcC
Confidence 9999988888899999999999999999999999999999999999999999999999999999988887777544443
No 3
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=274.29 Aligned_cols=212 Identities=26% Similarity=0.385 Sum_probs=184.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Q psy15426 27 DSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMF----QSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFT 102 (251)
Q Consensus 27 ~~~~r~fl~kvY~~l~~~l~~ta~~~~~~~~~~~~----~~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~l~~ft 102 (251)
|++.++|++|||.++++++++|++++|.....++. ..+|++++.+++.++.+++...+.+ +|+|.....+..|+
T Consensus 17 ~~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~~~~~~~~vl~~a~l~~~~~~~~~~~--~s~~~~~~~~~~~t 94 (233)
T COG0670 17 DLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLLSLSPPGFVLIIAGLAGVFFLSRKIN--KSSPTALILFFVYT 94 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhc--cCcchHHHHHHHHH
Confidence 45667999999999999999999998875432221 1244567888888888887766543 37899999999999
Q ss_pred HHHHHhHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhccchHHH
Q psy15426 103 LCTGIGLGPLLEMAIVV-NPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFD 181 (251)
Q Consensus 103 ~~~G~~~g~~~~~~~~~-~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~l~~ 181 (251)
.++|++++|++..+... ++.+|.+|+..|+++|.+++++++++| +|++.+++.++++++++++++++|+|+++|.+++
T Consensus 95 ~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk-~Dls~l~~~l~~aligLiiasvvn~Fl~s~~l~~ 173 (233)
T COG0670 95 ALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTK-RDLSSLGSFLFMALIGLIIASLVNIFLGSSALHL 173 (233)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999998766553 456799999999999999999999998 5999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhccCccch
Q psy15426 182 VTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVLIILHSKEVEE 242 (251)
Q Consensus 182 i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL~il~~~~~~~ 242 (251)
++|++|+++|+++++||||+|+|. +.++++++.+|++||+|++|+|+.+||+++...+||
T Consensus 174 ~IS~lgvlifsgli~yDtq~I~~~-~~~~~~~i~~AlsLYldfiNlF~~LL~i~g~~~~r~ 233 (233)
T COG0670 174 AISVLGVLIFSGLIAYDTQNIKRM-EGGERLAIMGALSLYLDFINLFLSLLRILGILSNRR 233 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999985 567899999999999999999999999999766654
No 4
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=100.00 E-value=3.4e-38 Score=271.25 Aligned_cols=205 Identities=30% Similarity=0.484 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Q psy15426 30 TKQHLQNVYGCLTLGMLAATAGAYLQLTQA----MFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCT 105 (251)
Q Consensus 30 ~r~fl~kvY~~l~~~l~~ta~~~~~~~~~~----~~~~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~l~~ft~~~ 105 (251)
+|+|++|||.+++.|+++|+++++.....+ ...+++..|++.++++++.+.+.+.+.+++++|.|++++..|++++
T Consensus 2 ~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~ 81 (212)
T cd06181 2 RRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRNVLSNTPLGWLLLLAFLGLVILLFCCRIKRRSSPANLILLFLFTALM 81 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 469999999999999999999999876322 1224455677777777877777776677789999999999999999
Q ss_pred HHhHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q psy15426 106 GIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDVTLY 185 (251)
Q Consensus 106 G~~~g~~~~~~~~~~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~ 185 (251)
|+++||+. ..+++..+.+|+.+|+++|++++++++++| +|+++++++++.++.++++.++.++|++++..+.++++
T Consensus 82 g~~l~~~~---~~~~~~~i~~A~~~T~~if~~l~l~a~~tk-~d~~~~g~~l~~~~~~l~~~~l~~~f~~~~~~~~~~~~ 157 (212)
T cd06181 82 GVTLGPIL---SVYTAASVLQAFGITAAVFGGLSLYALTTK-RDFSFLGGFLFMGLIVLIVASLVNIFLQSPALQLAISA 157 (212)
T ss_pred HHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 99999996 356788899999999999999999999998 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy15426 186 LGLVIMCGFILYDTQLILEKVKQ--GDKDHVSHCIDLFIDFIGVFRRVLIILHSK 238 (251)
Q Consensus 186 ~gv~lf~~~i~yDtq~i~~~~~~--~~~d~i~~Al~LylDiinLFl~iL~il~~~ 238 (251)
+|+++|++|++||||+++++.+. ++|||+.||++||+|++|+|+++||+++++
T Consensus 158 ~g~~lf~~~l~~Dtq~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~il~~~ 212 (212)
T cd06181 158 LGVLLFSGYILYDTQLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLRILGSR 212 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998764 799999999999999999999999999753
No 5
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=100.00 E-value=4.7e-33 Score=237.11 Aligned_cols=200 Identities=30% Similarity=0.525 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHhhhccccchhh--HHHHHHHHHHHHH
Q psy15426 31 KQHLQNVYGCLTLGMLAATAGAYLQLTQA-MFQ-STLVMLLSSVGAFGFLIYVMSTKNQINSNRN--RTGAFIGFTLCTG 106 (251)
Q Consensus 31 r~fl~kvY~~l~~~l~~ta~~~~~~~~~~-~~~-~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~--~~~~l~~ft~~~G 106 (251)
|+|++|||.+++.|+.+|+++++.....+ +.+ +.+..|++.++++++.+...+..++.+++|. ++..+..|+..+|
T Consensus 1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~~~g 80 (205)
T PF01027_consen 1 RQFLRKVYGLLALQLAITALGAFLVLASPLFLSQHFPLSWVSLIVSLVLLIFLYILFNRRRRFPSNVALILLFIFTLLEG 80 (205)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 68999999999999999999988876433 222 2445577777777766443333322223344 4889999999999
Q ss_pred HhHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q psy15426 107 IGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDVTLYL 186 (251)
Q Consensus 107 ~~~g~~~~~~~~~~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~~ 186 (251)
+..+++.. .++|+.+.+|+..|+++|++++++++++| +|+++++++++.++.++++.+++++|++++.++.+++++
T Consensus 81 ~~~~~i~~---~~~~~~v~~a~~~T~~if~~l~~~a~~~~-~d~~~~~~~l~~~l~~l~i~~l~~~f~~~~~~~~~is~~ 156 (205)
T PF01027_consen 81 LLLGPISS---FYDPSIVLQAFLLTAAIFIALTLYAFFTK-RDFTRWGGILFIGLIGLIIFGLVSIFLPSSPLYLLISYI 156 (205)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcccchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999973 46799999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy15426 187 GLVIMCGFILYDTQLILEKVKQGDKDH-VSHCIDLFIDFIGVFRRVLIIL 235 (251)
Q Consensus 187 gv~lf~~~i~yDtq~i~~~~~~~~~d~-i~~Al~LylDiinLFl~iL~il 235 (251)
|+++|++|++||||+++++.+ ++||+ +.+|++||+|++|+|+++||++
T Consensus 157 ~~~lf~~~l~~Dt~~i~~~~~-~~~~~~i~~Al~Ly~d~i~lF~~iL~ll 205 (205)
T PF01027_consen 157 GILLFSLYLVYDTQRIIRRYF-SPDDYAIIAALSLYLDIINLFLRILRLL 205 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999986433 45565 9999999999999999999986
No 6
>KOG2322|consensus
Probab=100.00 E-value=8.4e-33 Score=235.86 Aligned_cols=194 Identities=21% Similarity=0.329 Sum_probs=173.3
Q ss_pred ccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHH
Q psy15426 24 TKVDSSTK-QHLQNVYGCLTLGMLAATAGAYLQL----TQAMFQ-STLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGA 97 (251)
Q Consensus 24 ~~~~~~~r-~fl~kvY~~l~~~l~~ta~~~~~~~----~~~~~~-~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~ 97 (251)
+..|+.+| .|+||||+++++|+++|.+.+.... .+.+.+ ++|.+|.+.+..++..+++.|....++++|.|+++
T Consensus 37 ~~~~~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~r~k~P~N~il 116 (237)
T KOG2322|consen 37 AFCDQSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGLRRKSPVNLIL 116 (237)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcccccCcHHHhH
Confidence 56788888 9999999999999999987665432 344554 57778999999999999999988888999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHH-Hhhcc
Q psy15426 98 FIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLAN-LFFGS 176 (251)
Q Consensus 98 l~~ft~~~G~~~g~~~~~~~~~~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~-~f~~~ 176 (251)
+..||..++++.|... ..+++.+|.+|+.+|+++++++++|++++| +|++..++.+++.++++++.+++. +|..+
T Consensus 117 L~iFT~a~s~~~g~~~---a~~~~~~VL~Al~IT~~V~~slt~~t~qtK-~DFt~~~~~l~~~l~vl~~~g~I~~~f~~~ 192 (237)
T KOG2322|consen 117 LGIFTLAEAFMTGLVT---AFYDAKVVLLALIITTVVVLSLTLFTLQTK-YDFTSLGGFLFALLIVLLLFGLIFLFFPYG 192 (237)
T ss_pred HHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhheeeEEEEEEeec-cchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999885 468999999999999999999999999997 699999999999999999999554 44568
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q psy15426 177 KLLFDVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFID 223 (251)
Q Consensus 177 ~~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylD 223 (251)
+.++.+++.+|.++|++|++||||.+++ +.++|||+.+|++||+|
T Consensus 193 ~~~~~vya~lgAllf~~yl~~Dtqllm~--~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322|consen 193 PILVMVYAALGALLFCGYLVYDTQLLMG--RISPEEYIFAALNLYLD 237 (237)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHhc--cCCHHHHHHHHHHhhcC
Confidence 8999999999999999999999999998 66799999999999998
No 7
>KOG1630|consensus
Probab=99.92 E-value=3.7e-24 Score=183.66 Aligned_cols=220 Identities=19% Similarity=0.295 Sum_probs=177.4
Q ss_pred cchhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy15426 13 SVFKNFNKAFRTKVDSSTKQHLQNVYGCLTLGMLAATAGAYLQLT----QAM-FQSTLVMLLSSVGAFGFLIYVMSTKNQ 87 (251)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~r~fl~kvY~~l~~~l~~ta~~~~~~~~----~~~-~~~~~~~~~~~i~~l~l~~~l~~~~~~ 87 (251)
.+..++.|. ..-.++++|+.+..||.+++.++.+|++.+..... .++ .+.+ |++.++.+++++......+.
T Consensus 95 s~e~si~dk-s~iWPqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg---~va~~~tla~mi~sG~lars 170 (336)
T KOG1630|consen 95 SNEISIIDK-SVIWPQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGG---WVAIGVTLAAMIGSGMLARS 170 (336)
T ss_pred cccchHHHh-ccccHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccHHHHHHHhcCc---hHHHHHHHHHHHhcchhhhc
Confidence 344455544 14567889999999999999999999877655431 122 2344 78888888888776655443
Q ss_pred c--cc-hhhHHHHHHHHHHHHHHhHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHH
Q psy15426 88 I--NS-NRNRTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTL 164 (251)
Q Consensus 88 ~--~~-~~~~~~~l~~ft~~~G~~~g~~~~~~~~~~~~~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~l 164 (251)
. ++ ...+...|.+++.++|-.+.|+. ..+..+...|...|++|..+++..+.+.+.+.|..++++|-+|+-++
T Consensus 171 i~Yq~g~gaKhLAW~lHc~vlGAV~APlc----~lgGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPLaiGlGvV 246 (336)
T KOG1630|consen 171 IEYQPGPGAKHLAWLLHCGVLGAVVAPLC----FLGGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPLAIGLGVV 246 (336)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHhhHH----hcccHHHHHHHHHHccccchhhhhhhcCcHHHHhhcCCCceeeeeeE
Confidence 2 12 22344568999999999999994 67788999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHhhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CchHHHHHHHHHHHHHHHHHHHHH
Q psy15426 165 ITLSLANLFFGSK-----LLFDVTLYLGLVIMCGFILYDTQLILEKVKQ-------GDKDHVSHCIDLFIDFIGVFRRVL 232 (251)
Q Consensus 165 iv~~l~~~f~~~~-----~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~-------~~~d~i~~Al~LylDiinLFl~iL 232 (251)
++.++.++|.|.+ .+..+..+.|+++|++|++||||++.++.|. .+.|++.+++++|+|.+|||++|.
T Consensus 247 Fvssl~sm~LPPtta~GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiriv 326 (336)
T KOG1630|consen 247 FVSSLGSMFLPPTTALGAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRIV 326 (336)
T ss_pred ehhhhhhhhcCCchhhhhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999753 4667888999999999999999999986542 236999999999999999999999
Q ss_pred HHhccCcc
Q psy15426 233 IILHSKEV 240 (251)
Q Consensus 233 ~il~~~~~ 240 (251)
.|++..+.
T Consensus 327 ~il~ggqr 334 (336)
T KOG1630|consen 327 MILGGGQR 334 (336)
T ss_pred hhhcCCcc
Confidence 99988443
No 8
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=99.82 E-value=1.2e-17 Score=147.74 Aligned_cols=208 Identities=14% Similarity=0.081 Sum_probs=159.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Q psy15426 26 VDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCT 105 (251)
Q Consensus 26 ~~~~~r~fl~kvY~~l~~~l~~ta~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~l~~ft~~~ 105 (251)
-..+.++.+.|+-.++++- .++++.+|.....+.-....++.++.++++++.+...++|+. ++|. +-..|+++|
T Consensus 51 ~~MT~~~vv~KT~~ll~ll-~~~a~~~~~~~~~~~~~~~~~~~~g~i~glvl~lv~~F~~~~--~sp~---l~~~YA~~E 124 (274)
T PF12811_consen 51 RRMTVDGVVNKTGILLGLL-VVTAAVSWFLIPSNPGLAMPLAIVGAIGGLVLALVISFKRKV--WSPA---LAPIYAVLE 124 (274)
T ss_pred CCcccccHHHHHHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCCcc--CChH---HHHHHHHHH
Confidence 3444578999997666544 456677775432211111233456777888888887776431 2452 457899999
Q ss_pred HHhHHHHHHHHHH-h---ChhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhhHHHHHHHHHHHHHHHHHHHhhc-----
Q psy15426 106 GIGLGPLLEMAIV-V---NPSIVVTAFMLTTLLFVSFTLAAIFARE-GQWIYIGGSLMTMLSTLITLSLANLFFG----- 175 (251)
Q Consensus 106 G~~~g~~~~~~~~-~---~~~~I~~A~~~T~~if~~lsl~a~~tk~-~d~~~~g~~L~~~l~~liv~~l~~~f~~----- 175 (251)
|+.+|.+...+.. + .|+++.||+++|.++|+++.+ .|.++. |...++.++...+..+..++.++|+.+.
T Consensus 125 G~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~-lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~ 203 (274)
T PF12811_consen 125 GVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLA-LYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGS 203 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH-HHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998765442 2 389999999999999999887 566654 6777899999999999999999886532
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy15426 176 ---SKLLFDVTLYLGLVIMCGFILYDTQLILEKVKQG--DKDHVSHCIDLFIDFIGVFRRVLIILHSKEV 240 (251)
Q Consensus 176 ---~~~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~--~~d~i~~Al~LylDiinLFl~iL~il~~~~~ 240 (251)
++++.+.++.+++++-+..++.|++.|.+..+.+ ++..|.+|++|-++++|||+++||+|+..++
T Consensus 204 l~~~gplgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vTLVWLYlEILRLL~~l~~ 273 (274)
T PF12811_consen 204 LRDGGPLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVTLVWLYLEILRLLSKLQN 273 (274)
T ss_pred cccCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999987764 4568999999999999999999999987654
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=8e-14 Score=117.22 Aligned_cols=224 Identities=11% Similarity=0.107 Sum_probs=161.3
Q ss_pred cccc-hhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy15426 11 VSSV-FKNFNKAFRTKVDSSTKQHLQNVYGCLTLGMLAATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQIN 89 (251)
Q Consensus 11 ~~~~-~~~~~~~~~~~~~~~~r~fl~kvY~~l~~~l~~ta~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~~l~~~~~~~~ 89 (251)
++.+ +++..+.-++.-+..+++.+.|+-..++..+. |++.+|.....+..-..+..++..++++++.+...+.++ +
T Consensus 31 ~p~~~y~~vyre~~A~rpmTiddvvtkTG~tLav~~v-tavvs~~~~lv~p~La~~ltlvGaiGGlilvLvatFgkK--~ 107 (276)
T COG4760 31 FPADPYLAVYREGNATRPMTIDDVVTKTGATLAVLLV-TAVVSFFLVLVNPALAMPLTLVGAIGGLILVLVATFGKK--Q 107 (276)
T ss_pred CCCCcchhhhhcccccCceeecchhhhhhHHHHHHHH-HHHHHHHHHhcCHHhcccHhHHHHhhhHHHHHHHHhccc--c
Confidence 4444 56666664454455667999999888877655 788888665322111122446778888888887777644 3
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhhHHHHHHHHH
Q psy15426 90 SNRNRTGAFIGFTLCTGIGLGPLLEMAIVV------NPSIVVTAFMLTTLLFVSFTLAAIFARE-GQWIYIGGSLMTMLS 162 (251)
Q Consensus 90 ~~~~~~~~l~~ft~~~G~~~g~~~~~~~~~------~~~~I~~A~~~T~~if~~lsl~a~~tk~-~d~~~~g~~L~~~l~ 162 (251)
.+|. .-..|+++||+.+|.+.-....+ -..+|.+|.++|.++|.+|-. .|.+.. |....+...+..+..
T Consensus 108 ~spa---i~l~YAv~EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML~-vYktGaIkvTpkF~r~v~a~~~ 183 (276)
T COG4760 108 WSPA---IVLSYAVLEGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGMLV-VYKTGAIKVTPKFTRMVVAATF 183 (276)
T ss_pred CChH---HHHHHHHHHHHHHHHHHHHhccceEEeccccceeHHHHHHHHHHHHHHHH-HHhcCceeecchhHHHHHHHHH
Confidence 5663 56789999999999986322212 256889999999999999987 576632 445566777778888
Q ss_pred HHHHHHHHHH----hhc--cc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHH
Q psy15426 163 TLITLSLANL----FFG--SK------LLFDVTLYLGLVIMCGFILYDTQLILEKVKQG--DKDHVSHCIDLFIDFIGVF 228 (251)
Q Consensus 163 ~liv~~l~~~----f~~--~~------~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~--~~d~i~~Al~LylDiinLF 228 (251)
++++..+.|+ |.+ ++ .+.+++|..++.+-.+-.+.|++.+.+..|.+ ++..|..|++|-+.++|+|
T Consensus 184 Gvl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~fllDFDaad~~vr~GAP~kmaWgvAlGL~VTLVWLY 263 (276)
T COG4760 184 GVLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSFLLDFDAADQMVRAGAPEKMAWGVALGLTVTLVWLY 263 (276)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCCCceEeeHHHHHHHHHHHHHHhhhhHHHHHHHcCChhhhHHHHHHhHHHHHHHHH
Confidence 8777777774 322 22 45578888877777777888888888877765 4568999999999999999
Q ss_pred HHHHHHhccCccc
Q psy15426 229 RRVLIILHSKEVE 241 (251)
Q Consensus 229 l~iL~il~~~~~~ 241 (251)
+++||+|+.-+||
T Consensus 264 ~EiLRLLSy~Qnr 276 (276)
T COG4760 264 LEILRLLSYLQNR 276 (276)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999988775
No 10
>KOG3488|consensus
Probab=89.39 E-value=4 Score=28.99 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhccCchHH----HHHHHHHHHHHHHHHHHHHHH
Q psy15426 179 LFDVTLYLGLVIMCGFILY-------DTQLILEKVKQGDKDH----VSHCIDLFIDFIGVFRRVLII 234 (251)
Q Consensus 179 l~~i~~~~gv~lf~~~i~y-------Dtq~i~~~~~~~~~d~----i~~Al~LylDiinLFl~iL~i 234 (251)
..+...++...+|..|.++ |.|.+++++-. ++|| ..++.-.-+.++..|+.++-+
T Consensus 8 vgl~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFL-pr~yAi~iPvaagl~ll~lig~Fis~vMl 73 (81)
T KOG3488|consen 8 VGLMLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFL-PREYAITIPVAAGLFLLCLIGTFISLVML 73 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHhc-ChhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667777777777654 88888887743 3343 244555567899999988766
No 11
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=82.89 E-value=3.4 Score=30.63 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q psy15426 163 TLITLSLANLFFGSKLLFDVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIG 226 (251)
Q Consensus 163 ~liv~~l~~~f~~~~~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiin 226 (251)
.+++..++..+++.... ...++++++.++-.+..+++.+-.+.++++.+..+-++.=|+.+
T Consensus 15 ~~l~~~lvG~~~g~~~~---~l~~~l~~~l~wh~~~l~rL~~WL~~~~~~~pP~~~G~W~~if~ 75 (90)
T PF11808_consen 15 LLLAAALVGWLFGHLWW---ALLLGLLLYLFWHLYQLYRLERWLRNPRKDEPPEGSGIWGEIFD 75 (90)
T ss_pred HHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Confidence 34444445555544322 23345555566666666776665554445556666666666544
No 12
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=53.45 E-value=7.6 Score=33.05 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcc-CccchhhhhhcccC
Q psy15426 221 FIDFIGVFRRVLIILHS-KEVEEKKKSNKSQE 251 (251)
Q Consensus 221 ylDiinLFl~iL~il~~-~~~~~~~~~~~~~~ 251 (251)
=+|++|++..+|-.=.. ..+++|.|++++||
T Consensus 161 ~L~iinii~lllp~~~~~~~~~~~~~~~~~~~ 192 (192)
T PTZ00201 161 ILDILNIIFLLLPCTVPASKANEKPESPTAQE 192 (192)
T ss_pred HHHHHHHHHHHhccccCCcccccCCCcCcccC
Confidence 36999999998877222 22334444444443
No 13
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=48.88 E-value=2.3e+02 Score=26.42 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15426 216 HCIDLFIDFIGVFRRV 231 (251)
Q Consensus 216 ~Al~LylDiinLFl~i 231 (251)
.....+..++|+|.++
T Consensus 224 ~r~~r~yrf~nlFtdV 239 (386)
T PF05975_consen 224 KRRMRFYRFFNLFTDV 239 (386)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3456677788888753
No 14
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.32 E-value=58 Score=25.05 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhh
Q psy15426 185 YLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVLIILHSKEVEEKKKS 246 (251)
Q Consensus 185 ~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL~il~~~~~~~~~~~ 246 (251)
++-++++++++++.+-...+ ..-|-|...=+++.++..-+|.--+-+++.+|..+|.|+
T Consensus 8 ~~~~~~~~~Wi~~N~~~~~~---~~fDpyPFilLnl~lS~~Aa~~ap~IlmsQNRq~~~dr~ 66 (108)
T PF06210_consen 8 IIFTVFLAVWILLNILAPPR---PAFDPYPFILLNLVLSLEAAYQAPLILMSQNRQAARDRL 66 (108)
T ss_pred HHHHHHHHHHHHHHhhcccc---CCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 34444555566655543332 111233455566666666666666666665555444333
No 15
>KOG3103|consensus
Probab=44.67 E-value=1.5e+02 Score=26.10 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q psy15426 123 IVVTAFMLTTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGS 176 (251)
Q Consensus 123 ~I~~A~~~T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~f~~~ 176 (251)
+...++.+|..++..+.+.+ .|+-.+....+.+--++.=+.+.+.++++++.
T Consensus 144 Iygi~~~gsl~iy~L~nlm~--~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~ 195 (249)
T KOG3103|consen 144 IYGISLLGSLSIYFLLNLMS--NKNVSFGCVASVLGYCLLPLVVLSFVNIFVGL 195 (249)
T ss_pred EeeeHHHHHHHHHHHHHHHh--hcCcceeeehHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567888999999999887 44457888888888888889999999999874
No 16
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=42.76 E-value=1.7e+02 Score=23.19 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=26.2
Q ss_pred hhhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15426 15 FKNFNKAFRTKVDSSTKQHLQNVYGCLTLGMLAATAGAYLQLT 57 (251)
Q Consensus 15 ~~~~~~~~~~~~~~~~r~fl~kvY~~l~~~l~~ta~~~~~~~~ 57 (251)
-+.+.++ .+.+|..+++..++..+++..++..++...+..+
T Consensus 15 ~~~i~~~--~~~~~~~~~~~~~~l~~lGall~~~gii~fvA~n 55 (145)
T PF09925_consen 15 AEAILAF--YGERPSRSSWLARILLYLGALLLGLGIILFVAAN 55 (145)
T ss_pred HHHHHHH--hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666 3333322246888888888888877777766654
No 17
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=3.1e+02 Score=26.44 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy15426 134 LFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANLFFGSKLLFDVTLYLGLVIMCGFILYDTQL 201 (251)
Q Consensus 134 if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~~gv~lf~~~i~yDtq~ 201 (251)
+...+.++++..- .....+-.|+....+++++.+. .|+.. -...+.+..++....+++|...
T Consensus 266 i~LlL~f~g~~~~--~~~~~gllLiilG~iLiv~E~~---~p~fG-vigl~Gii~~iiG~~~L~~~~~ 327 (436)
T COG1030 266 ILLLLGFYGLLFL--GINWAGLLLIILGAILIVAEAF---VPGFG-VIGLLGIILFIIGLLLLFPSGT 327 (436)
T ss_pred HHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHHHh---cccch-HHHHHHHHHHHHhhhhccCCCC
Confidence 3444555665542 4555666666666666666553 33321 1244445556777888888775
No 18
>COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]
Probab=36.13 E-value=3.1e+02 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15426 186 LGLVIMCGFILYDTQLILEK 205 (251)
Q Consensus 186 ~gv~lf~~~i~yDtq~i~~~ 205 (251)
.|+...+.|.+|=....+..
T Consensus 135 ~gi~ll~l~~~yl~~~~~~~ 154 (320)
T COG0530 135 DGIVLLLLYVLYLYYLLKLS 154 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555443
No 19
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.76 E-value=4.1e+02 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=11.2
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHH
Q psy15426 174 FGSKLLFDVTLYLGLVIMCGFILYDT 199 (251)
Q Consensus 174 ~~~~~l~~i~~~~gv~lf~~~i~yDt 199 (251)
.++.-.-++.+.+++.+--+.+.|=|
T Consensus 398 Lq~EdyALL~GSl~LF~iLa~vM~~T 423 (430)
T PF06123_consen 398 LQSEDYALLMGSLLLFIILALVMYLT 423 (430)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhee
Confidence 33333334444444444444444443
No 20
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=35.26 E-value=3.6e+02 Score=24.82 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15426 32 QHLQNVYGCLTLGMLAATAGAYLQ 55 (251)
Q Consensus 32 ~fl~kvY~~l~~~l~~ta~~~~~~ 55 (251)
.|.||+|..=.+|+..........
T Consensus 31 ~~~~r~~~~r~~g~~~~~~~~~~~ 54 (366)
T PRK10245 31 RFARRVRLPRAVGLAGMFLPIAST 54 (366)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHH
Confidence 699999998888877665544433
No 21
>PF14038 YqzE: YqzE-like protein
Probab=34.33 E-value=10 Score=25.51 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=7.3
Q ss_pred Cccchhhhhhccc
Q psy15426 238 KEVEEKKKSNKSQ 250 (251)
Q Consensus 238 ~~~~~~~~~~~~~ 250 (251)
+++||++|+.|++
T Consensus 21 keERk~~k~~rK~ 33 (54)
T PF14038_consen 21 KEERKERKEERKE 33 (54)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666555544
No 22
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=33.29 E-value=4.3e+02 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHH
Q psy15426 131 TTLLFVSFTLAAIFAREGQWIYIGGSLMTMLSTLITLSLANL 172 (251)
Q Consensus 131 T~~if~~lsl~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~~ 172 (251)
|..+..-.+.-|...| -+.|..+.+..|.+++.+..+.+.
T Consensus 47 TVvvvfe~tvGatl~K--G~nR~lGTl~aG~La~~~~~la~~ 86 (406)
T PF11744_consen 47 TVVVVFEPTVGATLSK--GLNRGLGTLLAGILAFGVSWLASL 86 (406)
T ss_pred hhHhhccccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444344333 466666666666666655555543
No 23
>PRK10591 hypothetical protein; Provisional
Probab=32.86 E-value=37 Score=25.43 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhc
Q psy15426 225 IGVFRRVLIILH 236 (251)
Q Consensus 225 inLFl~iL~il~ 236 (251)
+++-+|..+.++
T Consensus 61 v~ivWR~a~~la 72 (92)
T PRK10591 61 VVIIWRVAKGLA 72 (92)
T ss_pred HHHHHHHHHHhc
Confidence 444455555444
No 24
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=32.54 E-value=98 Score=22.53 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=18.0
Q ss_pred chHHHHHHHHHH-----HHHHHHHHHHHHHhccCccchhhhh
Q psy15426 210 DKDHVSHCIDLF-----IDFIGVFRRVLIILHSKEVEEKKKS 246 (251)
Q Consensus 210 ~~d~i~~Al~Ly-----lDiinLFl~iL~il~~~~~~~~~~~ 246 (251)
.+|++.+++-+. +-+.-.|...|.=+.+.++||..++
T Consensus 40 a~d~l~a~~iI~~~gv~~~~ly~ffs~Ltkl~~~d~~ks~~~ 81 (84)
T PRK13718 40 ADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKSDER 81 (84)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 467665555444 3344445555554444444444443
No 25
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=32.21 E-value=2e+02 Score=22.39 Aligned_cols=52 Identities=13% Similarity=-0.061 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15426 153 IGGSLMTMLSTLITLSLANLFFGS---KLLFDVTLYLGLVIMCGFILYDTQLILE 204 (251)
Q Consensus 153 ~g~~L~~~l~~liv~~l~~~f~~~---~~l~~i~~~~gv~lf~~~i~yDtq~i~~ 204 (251)
..--++.|..+-++++.+.+++++ ...++.+..+.++-.+.|-.+.-++-.+
T Consensus 40 fR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~~~ 94 (118)
T PF12597_consen 40 FRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRRKE 94 (118)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777788888877754 3456666666666666666665554443
No 26
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=31.56 E-value=1.1e+02 Score=20.37 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15426 181 DVTLYLGLVIMCGFILYDTQLILEKV 206 (251)
Q Consensus 181 ~i~~~~gv~lf~~~i~yDtq~i~~~~ 206 (251)
|+|.++.-++||+|.+..|-+=.++.
T Consensus 4 WvY~vi~gI~~S~ym~v~t~~eE~~~ 29 (52)
T PF14147_consen 4 WVYFVIAGIIFSGYMAVKTAKEEREI 29 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888888999999999887665543
No 27
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=29.01 E-value=20 Score=28.45 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=4.6
Q ss_pred chhhhhhccc
Q psy15426 241 EEKKKSNKSQ 250 (251)
Q Consensus 241 ~~~~~~~~~~ 250 (251)
|||||+|+||
T Consensus 108 kK~~kr~eSq 117 (129)
T PF15099_consen 108 KKKKKRRESQ 117 (129)
T ss_pred hHHHHhhhhh
Confidence 3444444444
No 28
>KOG1629|consensus
Probab=27.03 E-value=4.2e+02 Score=22.95 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=21.3
Q ss_pred HHHHHHHHH----HHhccCccchhhhhhcccC
Q psy15426 224 FIGVFRRVL----IILHSKEVEEKKKSNKSQE 251 (251)
Q Consensus 224 iinLFl~iL----~il~~~~~~~~~~~~~~~~ 251 (251)
-+.+|.+.+ |||...-+|++||+||+||
T Consensus 202 sl~lf~dfvsvF~riLiIl~~~~~dK~~rk~~ 233 (235)
T KOG1629|consen 202 SLDLFTDFVSVFRRILIILAMNEADKKNRKER 233 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhc
Confidence 345666654 5677899999999999886
No 29
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=26.21 E-value=63 Score=24.42 Aligned_cols=8 Identities=25% Similarity=0.082 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy15426 227 VFRRVLII 234 (251)
Q Consensus 227 LFl~iL~i 234 (251)
+-+|..+.
T Consensus 63 ivWR~a~~ 70 (96)
T PF07214_consen 63 IVWRVAKG 70 (96)
T ss_pred HHHHHHHH
Confidence 33333333
No 30
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=25.71 E-value=88 Score=27.03 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhhhhcc
Q psy15426 214 VSHCIDLFIDFIGVFRRVLIILHSKEVEEKKKSNKS 249 (251)
Q Consensus 214 i~~Al~LylDiinLFl~iL~il~~~~~~~~~~~~~~ 249 (251)
..+++.+|.-.=|+|.-+=..+-++..+||++++|.
T Consensus 187 ~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~~~~~~ 222 (223)
T PRK00145 187 FKSALVLYWVIGNLIQIIQTYFIKKLELKKKVEAKA 222 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcc
Confidence 689999999999999888888777777777777663
No 31
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=25.09 E-value=5.3e+02 Score=23.54 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----H-HHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Q psy15426 32 QHLQNVYGCLTLGMLAATAGAYLQLT--QAMFQ----S-TLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLC 104 (251)
Q Consensus 32 ~fl~kvY~~l~~~l~~ta~~~~~~~~--~~~~~----~-~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~l~~ft~~ 104 (251)
.=+.++|.+-++-++...+..+++-+ .+++. + +...+..++++..... ..+++.+...-.|+ .+..+++.
T Consensus 100 ~~i~~tF~~ssIlLl~~Siss~iG~YiLapl~~~i~~~~gAaila~iviP~~~~y--~ln~~~~s~~~~R~-~ll~~a~~ 176 (299)
T PF05884_consen 100 SSIVETFSWSSILLLGFSISSFIGGYILAPLFGIIFGPFGAAILAYIVIPLIAYY--YLNKEDGSLAESRL-ALLFFALF 176 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh--hcccccCchHHHHH-HHHHHHHH
Confidence 45777888777777766666655432 12221 1 1111112222222211 22222211222343 57899999
Q ss_pred HHHhHHHHHHH
Q psy15426 105 TGIGLGPLLEM 115 (251)
Q Consensus 105 ~G~~~g~~~~~ 115 (251)
+|+.+|..++.
T Consensus 177 QGvL~Ga~ls~ 187 (299)
T PF05884_consen 177 QGVLVGAGLSH 187 (299)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 32
>COG4872 Predicted membrane protein [Function unknown]
Probab=25.08 E-value=5.8e+02 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=19.4
Q ss_pred cchhccccccchhhhhhhhcccCCHHH
Q psy15426 4 VGAAFGVVSSVFKNFNKAFRTKVDSST 30 (251)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (251)
.+|+||++..-+.+++|= +.-+++.
T Consensus 113 aAa~FGaslaLiaQiYnI--sgd~~sl 137 (394)
T COG4872 113 AAAIFGASLALIAQIYNI--SGDTPSL 137 (394)
T ss_pred HHHHhcchHHHHHHHHhc--cCCcHHH
Confidence 468999999999999997 5555443
No 33
>COG4243 Predicted membrane protein [Function unknown]
Probab=24.88 E-value=4e+02 Score=21.97 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy15426 181 DVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVLIILHS 237 (251)
Q Consensus 181 ~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL~il~~ 237 (251)
.....+....|+.|++|- |-++..|+.+|..+.+++.-.+-.+..
T Consensus 101 l~v~~~~g~~f~~yLiY~------------e~~~~~alC~YCtv~h~~~l~~~vl~~ 145 (156)
T COG4243 101 LLVGSLVGSAFVPYLIYL------------ELFVIGALCLYCTVAHLSILLLFVLAT 145 (156)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 344445566788888874 344667889999999988877766654
No 34
>PF01184 Grp1_Fun34_YaaH: GPR1/FUN34/yaaH family; InterPro: IPR000791 Several uncharacterised proteins are evolutionary related, including Yarrowia lipolytica (Candida lipolytica) glyxoxylate pathway regulator GPR1; yeast protein FUN34 and hypothetical proteins YCR10c and YDR384c; fission yeast hypothetical protein SpAC5D6.09c; Escherichia coli hypothetical protein yaaH; and Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) hypothetical protein Mth215. They are hydrophobic proteins that seem to contain six transmembrane regions and which could therefore be involved in transport. They have from 188 to 283 amino acids.; GO: 0016020 membrane
Probab=24.76 E-value=4.4e+02 Score=22.45 Aligned_cols=19 Identities=5% Similarity=-0.174 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy15426 158 MTMLSTLITLSLANLFFGS 176 (251)
Q Consensus 158 ~~~l~~liv~~l~~~f~~~ 176 (251)
+.|.++.++.++..+.-++
T Consensus 57 f~GGl~Q~laGi~e~~~GN 75 (211)
T PF01184_consen 57 FFGGLVQFLAGIWEFRRGN 75 (211)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 3333344444444433333
No 35
>COG4331 Predicted membrane protein [Function unknown]
Probab=22.56 E-value=3e+02 Score=22.54 Aligned_cols=45 Identities=20% Similarity=0.450 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHH-HHHHHHHHHHHHHHHhccCccc
Q psy15426 187 GLVIMCGFILYDTQLILEKVKQGDKDHVSHCID-LFIDFIGVFRRVLIILHSKEVE 241 (251)
Q Consensus 187 gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~-LylDiinLFl~iL~il~~~~~~ 241 (251)
.++++++|++|.-.+.-.. +|+. +-+.++++|+-+|.++..+.-|
T Consensus 112 si~vl~lFI~YQlyr~~~t----------~Si~livlti~Dv~viiLtllEYR~lk 157 (167)
T COG4331 112 SILVLVLFILYQLYRFFNT----------GSISLIVLTIFDVFVIILTLLEYRLLK 157 (167)
T ss_pred HHHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666654443321 2222 3456677777777777665555
No 36
>PRK02984 sspO acid-soluble spore protein O; Provisional
Probab=22.51 E-value=25 Score=22.79 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=4.8
Q ss_pred Cccchhhhhh
Q psy15426 238 KEVEEKKKSN 247 (251)
Q Consensus 238 ~~~~~~~~~~ 247 (251)
++++||||+|
T Consensus 39 rQnNKKrKkn 48 (49)
T PRK02984 39 RQNNKKRKKN 48 (49)
T ss_pred HHhhhhhhcc
Confidence 4445555443
No 37
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=22.35 E-value=4.7e+02 Score=21.91 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=7.1
Q ss_pred chhhhHHHHHHHHHH
Q psy15426 149 QWIYIGGSLMTMLST 163 (251)
Q Consensus 149 d~~~~g~~L~~~l~~ 163 (251)
.+-++.+.+.-++.+
T Consensus 72 ~FIk~KpTIi~~lfa 86 (178)
T TIGR00997 72 RFIKWKPTIIYGLFA 86 (178)
T ss_pred hhhhhHHHHHHHHHH
Confidence 344555555444443
No 38
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.34 E-value=85 Score=20.30 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy15426 185 YLGLVIMCGFILY 197 (251)
Q Consensus 185 ~~gv~lf~~~i~y 197 (251)
.+|+..+.+..+|
T Consensus 14 il~If~~iGl~Iy 26 (49)
T PF11044_consen 14 ILGIFAWIGLSIY 26 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455544
No 39
>PF14256 YwiC: YwiC-like protein
Probab=22.03 E-value=4e+02 Score=20.95 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15426 94 RTGAFIGFTLCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAR 146 (251)
Q Consensus 94 ~~~~l~~ft~~~G~~~g~~~~~~~~~~~~~I~~A~~~T~~if~~lsl~a~~tk 146 (251)
.......|.....+..-+.+ ..+|.++.-+. -...+.+..++.-..|
T Consensus 58 ~~~~~~~Yg~~a~~~~l~~l----~~~p~ll~~~~--~~~pl~~v~~~~~~~~ 104 (129)
T PF14256_consen 58 YLKWALIYGAIALVFGLPAL----LYAPRLLWWAL--LFLPLFAVNLYFAKRK 104 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 34456777766555544443 57888877666 4455555555544333
No 40
>KOG2422|consensus
Probab=21.76 E-value=37 Score=33.79 Aligned_cols=11 Identities=45% Similarity=0.546 Sum_probs=4.2
Q ss_pred Cccchhhhhhc
Q psy15426 238 KEVEEKKKSNK 248 (251)
Q Consensus 238 ~~~~~~~~~~~ 248 (251)
++.+|||+|||
T Consensus 89 k~k~KKK~krk 99 (665)
T KOG2422|consen 89 KNKKKKKKKRK 99 (665)
T ss_pred ccccchhhhhc
Confidence 33333333333
No 41
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=21.17 E-value=8.1e+02 Score=24.25 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh----ChhHHHHHHHHHHHH-HHHHHHHHHHhc------ccchhhhHHHHHHHHHHHHH
Q psy15426 98 FIGFTLCTGIGLGPLLEMAIVV----NPSIVVTAFMLTTLL-FVSFTLAAIFAR------EGQWIYIGGSLMTMLSTLIT 166 (251)
Q Consensus 98 l~~ft~~~G~~~g~~~~~~~~~----~~~~I~~A~~~T~~i-f~~lsl~a~~tk------~~d~~~~g~~L~~~l~~liv 166 (251)
+.....++.+..+..+.....+ |-+.+.|-..-.+.- |.++...+..++ ..--+++.++.-.+.+.+++
T Consensus 257 la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l 336 (554)
T COG0659 257 LALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLL 336 (554)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHH
Confidence 3444555666655554422211 334555555544333 333544444332 11225666666666666666
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCchHH----HHHHHHHHHHHHH
Q psy15426 167 LSLANLFFGSKLLFDVTLYLGLVIMCGFILYDTQLILE-KVKQGDKDH----VSHCIDLFIDFIG 226 (251)
Q Consensus 167 ~~l~~~f~~~~~l~~i~~~~gv~lf~~~i~yDtq~i~~-~~~~~~~d~----i~~Al~LylDiin 226 (251)
+.+..++-..|.- ...+++++.++=..|.+.+++ ..+..+.|. .......+.|+.+
T Consensus 337 ~~~~~~~~~IP~a----~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v~~~t~~~tv~~~l~~ 397 (554)
T COG0659 337 LFLAPLVSYIPLA----ALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTALLTVFFDLVI 397 (554)
T ss_pred HHHHHHHHhCcHH----HHHHHHHHHHHHhccHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 6666665444432 226777888888899888887 333455553 4555666777643
No 42
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.36 E-value=7.7e+02 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=17.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15426 24 TKVDSSTKQHLQNVYGCLTLGMLAATA 50 (251)
Q Consensus 24 ~~~~~~~r~fl~kvY~~l~~~l~~ta~ 50 (251)
.+.|.+.+..=.-=|++|.+++...+.
T Consensus 286 ~Pvd~Y~~~~Ra~KYgiLFI~LTF~~f 312 (430)
T PF06123_consen 286 EPVDHYQKSERAVKYGILFIGLTFLAF 312 (430)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666664444458998888775543
No 43
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=20.17 E-value=7.7e+02 Score=23.57 Aligned_cols=78 Identities=23% Similarity=0.229 Sum_probs=41.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcc-cchhh-h-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q psy15426 120 NPSIVVTAFMLTTLLFVSFTLAAIFARE-GQWIY-I-GGSLMTMLSTLITLSLANLFFGSKLLFDVTLYLGLVIMCGFIL 196 (251)
Q Consensus 120 ~~~~I~~A~~~T~~if~~lsl~a~~tk~-~d~~~-~-g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~~gv~lf~~~i~ 196 (251)
+...|...-.+++.-|..+++.....|+ +|... + -+.-..=...++...+..+|.|++.+..++.++|.+--..|++
T Consensus 72 G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~Fil 151 (429)
T PF03348_consen 72 GYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFIL 151 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777654433 34432 1 1111111233444445566778755555665555554444444
Q ss_pred H
Q psy15426 197 Y 197 (251)
Q Consensus 197 y 197 (251)
+
T Consensus 152 i 152 (429)
T PF03348_consen 152 I 152 (429)
T ss_pred H
Confidence 4
Done!