Query psy15426
Match_columns 251
No_of_seqs 125 out of 1103
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 20:47:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rdd_B UPF0092 membrane protei 19.9 37 0.0013 19.9 1.0 15 234-248 18-32 (37)
2 2v50_A Multidrug resistance pr 16.3 8.1E+02 0.028 24.5 13.5 22 92-113 389-410 (1052)
3 4f4l_A ION transport protein; 13.9 28 0.00096 25.5 -0.8 7 224-230 85-91 (112)
4 1pfi_A Major coat protein of P 13.2 2.4E+02 0.0083 17.1 3.4 24 147-170 16-39 (46)
5 2q8k_A Proliferation-associate 12.2 70 0.0024 28.8 1.2 17 230-246 360-376 (401)
6 1tac_A TAT protein; transcript 10.1 68 0.0023 22.6 0.3 13 235-247 43-55 (86)
7 3mi9_C Protein TAT; P-TEFB, HI 9.3 74 0.0025 22.4 0.2 14 235-248 43-56 (86)
8 2zi0_A Protein 2B, TAV2B; RNAI 8.8 68 0.0023 21.7 -0.1 26 226-251 10-35 (75)
9 2jtt_C Calcyclin-binding prote 8.7 2.2E+02 0.0076 16.5 2.1 26 14-39 7-32 (35)
10 2be6_D Voltage-dependent L-typ 8.6 78 0.0027 18.7 0.1 10 242-251 22-31 (37)
No 1
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.86 E-value=37 Score=19.88 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=7.2
Q ss_pred HhccCccchhhhhhc
Q psy15426 234 ILHSKEVEEKKKSNK 248 (251)
Q Consensus 234 il~~~~~~~~~~~~~ 248 (251)
.+..+.++||+|+++
T Consensus 18 Fl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 18 FMILRPQQKRTKEHK 32 (37)
T ss_dssp HHTHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHH
Confidence 344455555544444
No 2
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=16.26 E-value=8.1e+02 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHH
Q psy15426 92 RNRTGAFIGFTLCTGIGLGPLL 113 (251)
Q Consensus 92 ~~~~~~l~~ft~~~G~~~g~~~ 113 (251)
+.|...+.....+.|+.+-.-+
T Consensus 389 ~ln~~s~~gl~~~iGi~vd~aI 410 (1052)
T 2v50_A 389 SINTLTMFGMVLAIGLLVDDAI 410 (1052)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccceE
Confidence 3455556666667777665433
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.85 E-value=28 Score=25.48 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=3.4
Q ss_pred HHHHHHH
Q psy15426 224 FIGVFRR 230 (251)
Q Consensus 224 iinLFl~ 230 (251)
++|||+-
T Consensus 85 ~lNLfia 91 (112)
T 4f4l_A 85 VLNLFIG 91 (112)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 3455543
No 4
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=13.19 E-value=2.4e+02 Score=17.06 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=19.7
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHH
Q psy15426 147 EGQWIYIGGSLMTMLSTLITLSLA 170 (251)
Q Consensus 147 ~~d~~~~g~~L~~~l~~liv~~l~ 170 (251)
+.|....++.+..++..+.+++++
T Consensus 16 ~~Dm~si~~~IVGaLvil~VAGLi 39 (46)
T 1pfi_A 16 QGDMKAIGGYIVGALVILAVAGLI 39 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999998888888888775
No 5
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine aminopeptidase, PITA-bread, transcri; 1.60A {Homo sapiens} PDB: 2v6c_A
Probab=12.21 E-value=70 Score=28.80 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=5.5
Q ss_pred HHHHHhccCccchhhhh
Q psy15426 230 RVLIILHSKEVEEKKKS 246 (251)
Q Consensus 230 ~iL~il~~~~~~~~~~~ 246 (251)
.+..+|...-++||||+
T Consensus 360 e~~~~l~~~~~~~~~~~ 376 (401)
T 2q8k_A 360 ELKALLQSSASRKTQKK 376 (401)
T ss_dssp HHHHHHHSCC-------
T ss_pred HHHHHHhcccccccccc
Confidence 44566665444443333
No 6
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=10.05 E-value=68 Score=22.60 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=7.1
Q ss_pred hccCccchhhhhh
Q psy15426 235 LHSKEVEEKKKSN 247 (251)
Q Consensus 235 l~~~~~~~~~~~~ 247 (251)
||..-.|||||+|
T Consensus 43 LGIsYgRkkRr~R 55 (86)
T 1tac_A 43 LGISYGRKKRRQR 55 (86)
T ss_dssp SSSSSCCCSGGGS
T ss_pred CceEecccccccc
Confidence 4555566655544
No 7
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=9.25 E-value=74 Score=22.43 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred hccCccchhhhhhc
Q psy15426 235 LHSKEVEEKKKSNK 248 (251)
Q Consensus 235 l~~~~~~~~~~~~~ 248 (251)
||..-.|||||+|+
T Consensus 43 LGIsYgRkkRrqRR 56 (86)
T 3mi9_C 43 LGISYGRKKRRQRR 56 (86)
T ss_dssp SCCCSCC-------
T ss_pred CccccccccccccC
No 8
>2zi0_A Protein 2B, TAV2B; RNAI suppression, nucleus, suppressor of RNA silencing; 2.82A {Tomato aspermy virus} PDB: 3cz3_A
Probab=8.80 E-value=68 Score=21.70 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCccchhhhhhcccC
Q psy15426 226 GVFRRVLIILHSKEVEEKKKSNKSQE 251 (251)
Q Consensus 226 nLFl~iL~il~~~~~~~~~~~~~~~~ 251 (251)
|+=+.+.++...++.|||+-++|..|
T Consensus 10 ~v~lkLarm~Ekkk~rRk~Hk~NRke 35 (75)
T 2zi0_A 10 EIIRKLERMNQKKQAQRKRHKLNRKE 35 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHh
No 9
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=8.68 E-value=2.2e+02 Score=16.47 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred chhhhhhhhcccCCHHHHHHHHHHHH
Q psy15426 14 VFKNFNKAFRTKVDSSTKQHLQNVYG 39 (251)
Q Consensus 14 ~~~~~~~~~~~~~~~~~r~fl~kvY~ 39 (251)
.++++|+.+-..-|+++|+-+.|-|.
T Consensus 7 ~l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 7 GLMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp SHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
No 10
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=8.59 E-value=78 Score=18.65 Aligned_cols=10 Identities=40% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhhhcccC
Q psy15426 242 EKKKSNKSQE 251 (251)
Q Consensus 242 ~~~~~~~~~~ 251 (251)
||.|++|.||
T Consensus 22 Rkfkkrke~~ 31 (37)
T 2be6_D 22 RKFKKRKEQG 31 (37)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Done!