Query psy15426
Match_columns 251
No_of_seqs 125 out of 1103
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 20:47:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15426.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15426hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 25.5 1.4E+02 0.01 23.1 8.8 61 48-113 12-72 (248)
2 d2eyqa2 c.37.1.19 (A:349-465) 17.5 15 0.0011 25.3 0.4 16 233-248 100-115 (117)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 17.4 1.8E+02 0.013 21.1 8.1 37 181-217 99-135 (199)
4 d1q90b_ f.21.1.2 (B:) Cytochro 17.4 1.9E+02 0.014 21.7 7.2 80 153-245 33-112 (212)
5 d1eg3a2 a.39.1.7 (A:210-306) D 15.1 30 0.0022 23.4 1.5 30 5-34 42-73 (97)
6 d1wr0a1 a.7.14.1 (A:5-81) Vacu 8.4 1.3E+02 0.0092 18.6 2.9 21 214-234 27-47 (77)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 8.0 2.4E+02 0.017 17.2 5.2 24 24-47 33-56 (86)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.0 4.7E+02 0.034 19.7 7.3 29 140-171 42-70 (248)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 7.0 4.8E+02 0.035 19.8 7.4 80 153-245 32-111 (261)
10 d1wfda_ a.7.14.1 (A:) Hypothet 5.1 2.8E+02 0.02 17.5 3.3 20 214-233 31-50 (93)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=25.47 E-value=1.4e+02 Score=23.05 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhHHHHH
Q psy15426 48 ATAGAYLQLTQAMFQSTLVMLLSSVGAFGFLIYVMSTKNQINSNRNRTGAFIGFTLCTGIGLGPLL 113 (251)
Q Consensus 48 ta~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~~l~~~~~~~~~~~~~~~~l~~ft~~~G~~~g~~~ 113 (251)
.++..|.... .+.+..|.+.+.+++..++..+...++ |..|.+++ +-...++..+.+-|++
T Consensus 12 ~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~vy~s~---r~~p~kyi-~PG~~~l~~Fvi~Pi~ 72 (248)
T d2r6gf1 12 GLLVGYLVVL-MYAQGEYLFAITTLILSSAGLYIFANR---KAYAWRYV-YPGMAGMGLFVLFPLV 72 (248)
T ss_dssp HHHHHHTHHH-HHGGGCHHHHHHHHHHHHHHHHHHSSS---CCTTHHHH-HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHH-HHHcchHHHHHHHHHHHHheEEEEEcc---Cccceehh-hhHHHHHHHHHHHhhe
Confidence 4555565431 122344433333333333344444443 46888874 5666666677777765
No 2
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=17.52 E-value=15 Score=25.33 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=8.2
Q ss_pred HHhccCccchhhhhhc
Q psy15426 233 IILHSKEVEEKKKSNK 248 (251)
Q Consensus 233 ~il~~~~~~~~~~~~~ 248 (251)
.|+|.+-.++|||+||
T Consensus 100 dlfG~r~~~~~r~~rr 115 (117)
T d2eyqa2 100 DLLGERVARRRQDSRR 115 (117)
T ss_dssp HHSSCCCCCCCCCGGG
T ss_pred HhhCccccccCCCCCC
Confidence 4566654444444444
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.43 E-value=1.8e+02 Score=21.12 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHH
Q psy15426 181 DVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHC 217 (251)
Q Consensus 181 ~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~A 217 (251)
........+-++..+.+..++-.++...+++|.+..+
T Consensus 99 ~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a 135 (199)
T d1iwga7 99 MVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKS 135 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHG
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3334444444666666666555443333456655443
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.35 E-value=1.9e+02 Score=21.68 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Q psy15426 153 IGGSLMTMLSTLITLSLANLFFGSKLLFDVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVL 232 (251)
Q Consensus 153 ~g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL 232 (251)
+|+.+.......++.++.-.+...|..+..+..+ +.|.++...|.=---.|.-+=.+=++-+|++++
T Consensus 33 ~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv-------------~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~ 99 (212)
T d1q90b_ 33 IGGITFTCFLVQVATGFAMTFYYRPTVAEAFASV-------------QYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVF 99 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHH-------------HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------------HHHhhhCCCchhhcccccccchHHHHHHHHHHH
Confidence 6777777777777777766554333222111111 333332222210012334444555677888899
Q ss_pred HHhccCccchhhh
Q psy15426 233 IILHSKEVEEKKK 245 (251)
Q Consensus 233 ~il~~~~~~~~~~ 245 (251)
|.+=...=||+||
T Consensus 100 r~~~~gsyk~pre 112 (212)
T d1q90b_ 100 RVYLTGGFKRPRE 112 (212)
T ss_dssp HHHTTTTTSSSCH
T ss_pred HHHHcCcccCccc
Confidence 9875555444443
No 5
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.09 E-value=30 Score=23.37 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=18.9
Q ss_pred chhccccc--cchhhhhhhhcccCCHHHHHHH
Q psy15426 5 GAAFGVVS--SVFKNFNKAFRTKVDSSTKQHL 34 (251)
Q Consensus 5 ~~~~~~~~--~~~~~~~~~~~~~~~~~~r~fl 34 (251)
++.||+++ .+..++|+....+-.-+.++|+
T Consensus 42 ~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL 73 (97)
T d1eg3a2 42 VASFGGSNIEPSVRSCFQFANNKPEIEAALFL 73 (97)
T ss_dssp GGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHH
T ss_pred ccccCCCcchHHHHHHHhccCCCCcccHHHHH
Confidence 57899985 6789999874433233334443
No 6
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.39 E-value=1.3e+02 Score=18.56 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy15426 214 VSHCIDLFIDFIGVFRRVLII 234 (251)
Q Consensus 214 i~~Al~LylDiinLFl~iL~i 234 (251)
...|+.+|.+-++.|+..++-
T Consensus 27 y~~A~~~Y~~a~~~l~~~l~~ 47 (77)
T d1wr0a1 27 YEEALQLYQHAVQYFLHVVKY 47 (77)
T ss_dssp CSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999888873
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=8.02 E-value=2.4e+02 Score=17.19 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=16.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Q psy15426 24 TKVDSSTKQHLQNVYGCLTLGMLA 47 (251)
Q Consensus 24 ~~~~~~~r~fl~kvY~~l~~~l~~ 47 (251)
++.|+..++++.|...+....+.+
T Consensus 33 ~~~~~~~~~~i~~~~~~~i~~i~~ 56 (86)
T d2vv5a3 33 RKIDATVADFLSALVRYGIIAFTL 56 (86)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHH
Confidence 667888888888877666555443
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.00 E-value=4.7e+02 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=12.6
Q ss_pred HHHHHhcccchhhhHHHHHHHHHHHHHHHHHH
Q psy15426 140 LAAIFAREGQWIYIGGSLMTMLSTLITLSLAN 171 (251)
Q Consensus 140 l~a~~tk~~d~~~~g~~L~~~l~~liv~~l~~ 171 (251)
.|.+.+|| - .=.++++-|++.++++.+.-
T Consensus 42 ~~vy~s~r-~--~p~kyi~PG~~~l~~Fvi~P 70 (248)
T d2r6gf1 42 LYIFANRK-A--YAWRYVYPGMAGMGLFVLFP 70 (248)
T ss_dssp HHHHSSSC-C--TTHHHHHHHHHHHHHHTHHH
T ss_pred EEEEEccC-c--cceehhhhHHHHHHHHHHHh
Confidence 34455543 1 22334445555544444433
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.98 E-value=4.8e+02 Score=19.82 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Q psy15426 153 IGGSLMTMLSTLITLSLANLFFGSKLLFDVTLYLGLVIMCGFILYDTQLILEKVKQGDKDHVSHCIDLFIDFIGVFRRVL 232 (251)
Q Consensus 153 ~g~~L~~~l~~liv~~l~~~f~~~~~l~~i~~~~gv~lf~~~i~yDtq~i~~~~~~~~~d~i~~Al~LylDiinLFl~iL 232 (251)
+|+.+.......++.++.-.+...+..+..+.. ++.|.++...|.-=--.|+-+=.+=++-+|++++
T Consensus 32 ~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~S-------------v~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~ 98 (261)
T d3cx5c2 32 MGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSS-------------VEHIMRDVHNGYILRYLHANGASFFFMVMFMHMA 98 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHH-------------HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHheecCChHHHHHH-------------HHHHHhhhccChhhhhcccccHHHHHHHHHHHHH
Confidence 477777777777777776555432221111111 1222332221211112333333445667778888
Q ss_pred HHhccCccchhhh
Q psy15426 233 IILHSKEVEEKKK 245 (251)
Q Consensus 233 ~il~~~~~~~~~~ 245 (251)
|-+=.+.=|++|+
T Consensus 99 r~~~~gsy~~pre 111 (261)
T d3cx5c2 99 KGLYYGSYRSPRV 111 (261)
T ss_dssp HHHHHTTTSTTCH
T ss_pred HHHHhccccCccc
Confidence 8765555554443
No 10
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.08 E-value=2.8e+02 Score=17.48 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy15426 214 VSHCIDLFIDFIGVFRRVLI 233 (251)
Q Consensus 214 i~~Al~LylDiinLFl~iL~ 233 (251)
...|+.+|.+-++.++..++
T Consensus 31 y~eA~~~Y~~aie~l~~~~~ 50 (93)
T d1wfda_ 31 YQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999988876
Done!