RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15426
         (251 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 39.5 bits (91), Expect = 0.001
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 72/236 (30%)

Query: 56  LTQAMFQSTLVML-----LSSVGAFGF----LIYVMSTKNQINSNR---NRTGAFI---- 99
           L    +++ L++L       +  AF      L+   +T+ +  ++      T        
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294

Query: 100 --GFT---------LCTGIGLGPLLEMAIVVNPSIVVTAFMLTTLLFVSFTLAAIFAREG 148
               T                  L    +  NP              +S  + A   R+G
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP------------RRLS--IIAESIRDG 340

Query: 149 -----QWIYIGGSLMTMLSTLITLSLANL-------FFGSKLLF----DVTLYLGLVIM- 191
                 W ++       L+T+I  SL  L        F    +F     +   L L ++ 
Sbjct: 341 LATWDNWKHVNCD---KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIW 396

Query: 192 CGFILYDTQLILEK------VKQGDKDHVSHCIDLFIDFIGVFRRVLIILHSKEVE 241
              I  D  +++ K      V++  K+       ++++           LH   V+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVD 451



 Score = 32.9 bits (74), Expect = 0.098
 Identities = 51/315 (16%), Positives = 89/315 (28%), Gaps = 99/315 (31%)

Query: 12  SSVFKNFNKAFRTKVDSSTKQHLQN--------VYGCLTLG--MLAATAGAYLQLTQAM- 60
           + VF  +N + R +     +Q L          + G L  G   +A       ++   M 
Sbjct: 123 NQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 61  FQ-------------STLVMLLSSVGAFGFLIYVM------------STKNQINSNRNRT 95
           F+             + L ML         L+Y +            + K +I+S +   
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 96  GAFI---GFTLCTGIGLGPLLEMAIVVNPSIVVTAF------MLTTLLFVSFTLAAIFAR 146
              +    +  C       LL +  V N      AF      +LTT  F   T     A 
Sbjct: 235 RRLLKSKPYENC-------LLVLLNVQNAKAW-NAFNLSCKILLTTR-FKQVTDFLSAAT 285

Query: 147 EGQWIYIGGSLMTMLSTLI---TLSLANLFFG---SKLLFDVTLYLGLVI-MCGFILYDT 199
                    SL     TL      SL   +       L  +V       + +    + D 
Sbjct: 286 TTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 200 QLILEKVKQGDKDHVSHCIDLFIDFI------------GVFR-------RVLIIL----H 236
               +  K  + D ++  I+  ++ +             VF         +L ++     
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 237 SKEVEE--KKKSNKS 249
             +V     K    S
Sbjct: 401 KSDVMVVVNKLHKYS 415


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.70
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 29/99 (29%)

Query: 46   LAATAGAYLQLTQAMFQSTLV----MLLSSV---GAFGFLIYVMSTKNQINSNRNRTGAF 98
            LA+ A   + +   +    +V    M +         G   Y M     I  N  R  A 
Sbjct: 1770 LASLADV-MSIESLV---EVVFYRGMTMQVAVPRDELGRSNYGM-----IAINPGRVAAS 1820

Query: 99   IG----FTLCTGIG--LGPLLEMAIVVN----PSIVVTA 127
                    +   +G   G L+E   +VN        V A
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVE---IVNYNVENQQYVAA 1856


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.140    0.398 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,536,866
Number of extensions: 201400
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 11
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.6 bits)