Query psy15432
Match_columns 1255
No_of_seqs 778 out of 4431
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:55:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2525|consensus 100.0 2E-89 4.4E-94 786.6 37.7 471 47-652 14-494 (496)
2 PLN02881 tetrahydrofolylpolygl 100.0 6.4E-86 1.4E-90 787.1 45.8 472 49-652 11-530 (530)
3 PRK11929 putative bifunctional 100.0 7.3E-84 1.6E-88 834.5 54.7 820 10-1176 27-957 (958)
4 KOG2525|consensus 100.0 4.7E-85 1E-89 750.5 35.6 451 661-1195 16-479 (496)
5 PLN02881 tetrahydrofolylpolygl 100.0 2.2E-76 4.8E-81 705.2 40.8 464 661-1199 11-517 (530)
6 COG0285 FolC Folylpolyglutamat 100.0 1.2E-75 2.6E-80 684.5 40.0 410 52-652 2-423 (427)
7 PLN02913 dihydrofolate synthet 100.0 1.4E-72 3E-77 681.0 43.1 365 50-514 22-432 (510)
8 COG0285 FolC Folylpolyglutamat 100.0 2.3E-71 5E-76 648.4 37.3 346 664-1113 2-361 (427)
9 TIGR01499 folC folylpolyglutam 100.0 2E-68 4.4E-73 628.8 40.1 382 88-648 1-395 (397)
10 PLN02913 dihydrofolate synthet 100.0 4.6E-67 1E-71 632.9 41.8 366 662-1114 22-431 (510)
11 PRK10846 bifunctional folylpol 100.0 5.4E-64 1.2E-68 594.7 38.5 393 52-650 11-414 (416)
12 TIGR01499 folC folylpolyglutam 100.0 1.9E-63 4.1E-68 586.6 38.6 373 700-1165 1-387 (397)
13 PRK10846 bifunctional folylpol 100.0 4.5E-59 9.7E-64 552.7 38.1 378 665-1164 12-403 (416)
14 PRK00139 murE UDP-N-acetylmura 100.0 1.7E-45 3.7E-50 442.0 28.7 353 10-519 13-391 (460)
15 PRK14022 UDP-N-acetylmuramoyla 100.0 2.1E-43 4.6E-48 426.1 28.6 355 10-519 32-409 (481)
16 PRK00139 murE UDP-N-acetylmura 100.0 1.7E-42 3.6E-47 416.2 28.8 394 632-1167 15-435 (460)
17 COG0769 MurE UDP-N-acetylmuram 100.0 1.4E-41 3.1E-46 406.3 29.1 404 13-641 11-449 (475)
18 TIGR01143 murF UDP-N-acetylmur 100.0 1.6E-41 3.6E-46 402.9 24.1 381 637-1176 1-417 (417)
19 TIGR01085 murE UDP-N-acetylmur 100.0 1.2E-40 2.6E-45 400.6 30.6 358 11-519 3-400 (464)
20 PRK14022 UDP-N-acetylmuramoyla 100.0 8.8E-40 1.9E-44 394.7 28.2 401 632-1175 34-464 (481)
21 TIGR02068 cya_phycin_syn cyano 100.0 1.6E-38 3.5E-43 405.3 34.5 294 91-519 463-799 (864)
22 PRK11929 putative bifunctional 100.0 4.9E-39 1.1E-43 417.1 28.2 402 632-1167 29-475 (958)
23 TIGR01143 murF UDP-N-acetylmur 100.0 3.9E-39 8.4E-44 382.6 24.3 333 18-515 2-366 (417)
24 PRK14093 UDP-N-acetylmuramoyla 100.0 8.8E-39 1.9E-43 385.8 24.0 402 632-1183 28-471 (479)
25 TIGR01085 murE UDP-N-acetylmur 100.0 4E-38 8.6E-43 378.8 28.2 400 635-1167 7-449 (464)
26 PRK10773 murF UDP-N-acetylmura 100.0 3.9E-38 8.4E-43 377.8 25.6 388 632-1178 24-449 (453)
27 COG0770 MurF UDP-N-acetylmuram 100.0 1.4E-37 3E-42 368.5 24.8 391 631-1178 23-450 (451)
28 TIGR02068 cya_phycin_syn cyano 100.0 2.9E-36 6.3E-41 384.7 31.2 318 718-1163 477-848 (864)
29 PRK11930 putative bifunctional 100.0 2.8E-36 6E-41 385.4 21.3 395 632-1180 24-457 (822)
30 PRK14093 UDP-N-acetylmuramoyla 100.0 1.2E-35 2.6E-40 358.6 24.7 344 10-512 26-408 (479)
31 PRK01438 murD UDP-N-acetylmura 100.0 2.4E-35 5.3E-40 355.9 26.7 329 699-1180 105-476 (480)
32 PRK10773 murF UDP-N-acetylmura 100.0 5.2E-35 1.1E-39 350.8 27.9 335 10-511 22-391 (453)
33 PRK01390 murD UDP-N-acetylmura 100.0 1.6E-34 3.4E-39 347.2 27.7 302 719-1175 113-446 (460)
34 COG0769 MurE UDP-N-acetylmuram 100.0 2.4E-34 5.2E-39 344.3 28.2 337 699-1164 68-447 (475)
35 PRK01438 murD UDP-N-acetylmura 100.0 1.7E-33 3.6E-38 340.0 31.5 250 107-511 121-399 (480)
36 PRK11930 putative bifunctional 100.0 9.8E-34 2.1E-38 362.0 30.7 344 10-511 22-397 (822)
37 PRK00421 murC UDP-N-acetylmura 100.0 4.6E-33 1E-37 334.7 32.1 307 109-641 108-444 (461)
38 PRK02705 murD UDP-N-acetylmura 100.0 1.1E-33 2.4E-38 339.6 26.6 306 720-1173 109-441 (459)
39 PRK03803 murD UDP-N-acetylmura 100.0 6.7E-33 1.5E-37 332.1 28.6 300 721-1174 109-433 (448)
40 PRK03369 murD UDP-N-acetylmura 100.0 1.1E-32 2.4E-37 333.5 27.8 305 721-1174 118-473 (488)
41 PRK04308 murD UDP-N-acetylmura 100.0 1.2E-32 2.6E-37 329.6 27.5 302 720-1174 110-432 (445)
42 PRK03806 murD UDP-N-acetylmura 100.0 1.5E-32 3.2E-37 328.2 26.8 298 720-1174 105-424 (438)
43 PRK01390 murD UDP-N-acetylmura 100.0 1.8E-32 3.9E-37 329.5 27.0 248 107-511 113-385 (460)
44 PRK03803 murD UDP-N-acetylmura 100.0 2E-31 4.4E-36 319.3 32.7 248 109-511 109-377 (448)
45 PRK02705 murD UDP-N-acetylmura 100.0 9.7E-32 2.1E-36 322.8 29.3 252 107-511 108-381 (459)
46 PRK14106 murD UDP-N-acetylmura 100.0 2.7E-32 5.9E-37 326.7 24.1 291 720-1165 108-427 (450)
47 PRK04690 murD UDP-N-acetylmura 100.0 1.4E-31 3E-36 322.4 28.8 325 698-1174 95-442 (468)
48 TIGR01087 murD UDP-N-acetylmur 100.0 1.6E-31 3.4E-36 318.8 27.4 298 720-1174 102-421 (433)
49 PRK00421 murC UDP-N-acetylmura 100.0 3E-31 6.5E-36 319.1 29.3 302 721-1167 108-445 (461)
50 PRK02472 murD UDP-N-acetylmura 100.0 3E-31 6.5E-36 317.4 27.6 297 720-1171 108-428 (447)
51 PRK04308 murD UDP-N-acetylmura 100.0 5.5E-31 1.2E-35 315.4 29.8 248 108-512 110-376 (445)
52 PRK02006 murD UDP-N-acetylmura 100.0 1.4E-30 3E-35 316.2 33.3 270 87-512 103-421 (498)
53 PRK02006 murD UDP-N-acetylmura 100.0 6E-31 1.3E-35 319.4 30.1 321 699-1173 103-476 (498)
54 PRK03806 murD UDP-N-acetylmura 100.0 5.4E-31 1.2E-35 314.8 29.2 248 108-511 105-370 (438)
55 PRK00141 murD UDP-N-acetylmura 100.0 7.4E-31 1.6E-35 316.6 29.4 298 721-1171 122-450 (473)
56 PRK14106 murD UDP-N-acetylmura 100.0 6.2E-31 1.3E-35 315.0 28.1 246 108-511 108-379 (450)
57 TIGR01081 mpl UDP-N-acetylmura 100.0 1.9E-30 4.1E-35 311.1 31.5 251 109-512 103-386 (448)
58 PRK03369 murD UDP-N-acetylmura 100.0 5E-31 1.1E-35 319.1 26.7 245 109-512 118-383 (488)
59 TIGR01081 mpl UDP-N-acetylmura 100.0 2.1E-30 4.5E-35 310.8 30.2 315 698-1167 86-436 (448)
60 TIGR01082 murC UDP-N-acetylmur 100.0 2.7E-30 5.9E-35 309.7 30.8 258 109-519 100-387 (448)
61 TIGR01087 murD UDP-N-acetylmur 100.0 5.2E-30 1.1E-34 305.8 30.2 245 108-511 102-364 (433)
62 PRK01368 murD UDP-N-acetylmura 100.0 9E-31 1.9E-35 314.0 23.6 310 699-1172 90-431 (454)
63 PRK00141 murD UDP-N-acetylmura 100.0 2.2E-29 4.8E-34 303.8 33.7 246 109-511 122-388 (473)
64 PRK02472 murD UDP-N-acetylmura 100.0 1.5E-29 3.3E-34 302.8 30.3 245 108-511 108-374 (447)
65 PRK04690 murD UDP-N-acetylmura 100.0 8.1E-30 1.7E-34 307.1 27.5 249 109-512 116-381 (468)
66 TIGR01082 murC UDP-N-acetylmur 100.0 1.2E-29 2.7E-34 304.1 27.5 303 721-1167 100-440 (448)
67 PRK04663 murD UDP-N-acetylmura 100.0 1.9E-29 4.1E-34 301.7 27.3 293 721-1173 109-423 (438)
68 COG0770 MurF UDP-N-acetylmuram 100.0 3.8E-29 8.2E-34 296.8 29.0 337 10-513 22-395 (451)
69 COG0771 MurD UDP-N-acetylmuram 100.0 5.3E-29 1.1E-33 293.3 27.3 332 683-1180 86-439 (448)
70 PRK14573 bifunctional D-alanyl 100.0 4.8E-29 1E-33 318.4 27.0 261 109-519 105-385 (809)
71 PRK01368 murD UDP-N-acetylmura 100.0 8.3E-29 1.8E-33 297.1 25.1 214 108-448 104-341 (454)
72 PRK01710 murD UDP-N-acetylmura 100.0 2.7E-28 5.9E-33 293.3 26.3 304 720-1174 117-445 (458)
73 PRK00683 murD UDP-N-acetylmura 100.0 8E-28 1.7E-32 286.1 23.4 306 699-1172 86-399 (418)
74 COG0771 MurD UDP-N-acetylmuram 100.0 1.4E-26 3E-31 272.9 31.6 218 107-449 109-343 (448)
75 COG0773 MurC UDP-N-acetylmuram 100.0 4.6E-26 1E-30 265.9 32.7 276 91-520 96-396 (459)
76 PRK04663 murD UDP-N-acetylmura 100.0 1.1E-26 2.4E-31 278.0 26.4 246 109-512 109-372 (438)
77 PRK14573 bifunctional D-alanyl 99.9 1.1E-26 2.5E-31 296.7 27.0 257 721-1117 105-382 (809)
78 PRK01710 murD UDP-N-acetylmura 99.9 4.5E-26 9.7E-31 274.2 30.5 249 107-513 116-384 (458)
79 PRK00683 murD UDP-N-acetylmura 99.9 6.6E-26 1.4E-30 269.8 28.4 255 88-512 87-346 (418)
80 COG0773 MurC UDP-N-acetylmuram 99.9 3.5E-25 7.6E-30 258.6 29.7 301 721-1167 108-446 (459)
81 PRK03815 murD UDP-N-acetylmura 99.9 2.4E-23 5.3E-28 246.2 23.7 287 721-1174 90-388 (401)
82 PRK14016 cyanophycin synthetas 99.9 1.4E-21 2.9E-26 246.4 20.9 133 718-884 478-614 (727)
83 PRK14016 cyanophycin synthetas 99.9 2.3E-21 5E-26 244.3 20.7 200 92-328 465-699 (727)
84 PRK03815 murD UDP-N-acetylmura 99.9 9.1E-21 2E-25 224.4 23.4 233 109-511 90-331 (401)
85 PF08245 Mur_ligase_M: Mur lig 99.9 4.8E-21 1E-25 203.3 15.8 165 113-325 1-188 (188)
86 PF08245 Mur_ligase_M: Mur lig 99.8 3.6E-21 7.9E-26 204.3 13.0 163 725-937 1-188 (188)
87 PF02875 Mur_ligase_C: Mur lig 99.3 2.8E-12 6.1E-17 121.4 7.7 81 416-520 1-87 (91)
88 PF02875 Mur_ligase_C: Mur lig 99.2 2.4E-11 5.1E-16 115.1 8.1 80 1028-1120 1-86 (91)
89 COG1703 ArgK Putative periplas 97.0 0.0041 9E-08 70.8 10.7 144 721-887 52-205 (323)
90 COG1703 ArgK Putative periplas 96.9 0.0053 1.1E-07 70.0 11.2 156 89-274 39-204 (323)
91 PF03308 ArgK: ArgK protein; 95.1 0.09 1.9E-06 59.5 9.2 154 701-880 13-176 (266)
92 TIGR00750 lao LAO/AO transport 93.8 0.51 1.1E-05 54.8 11.9 48 91-141 20-69 (300)
93 PF03308 ArgK: ArgK protein; 93.6 0.063 1.4E-06 60.7 4.0 150 90-268 14-176 (266)
94 TIGR00750 lao LAO/AO transport 92.4 1 2.2E-05 52.3 11.8 48 703-753 20-69 (300)
95 TIGR03172 probable selenium-de 92.2 0.24 5.1E-06 55.6 6.0 37 722-758 1-37 (232)
96 PRK09435 membrane ATPase/prote 91.6 0.84 1.8E-05 53.9 9.9 35 719-753 55-91 (332)
97 PRK01077 cobyrinic acid a,c-di 91.0 0.26 5.7E-06 60.4 5.1 35 720-754 3-40 (451)
98 PRK13705 plasmid-partitioning 87.9 1.1 2.3E-05 54.2 7.0 55 86-140 82-141 (388)
99 PRK09435 membrane ATPase/prote 87.6 5.1 0.00011 47.5 12.2 35 107-141 55-91 (332)
100 PRK01077 cobyrinic acid a,c-di 87.3 0.78 1.7E-05 56.4 5.5 35 108-142 3-40 (451)
101 PHA02519 plasmid partition pro 85.9 1.6 3.4E-05 52.7 7.0 56 86-141 82-142 (387)
102 TIGR00379 cobB cobyrinic acid 85.3 1.2 2.7E-05 54.6 5.8 28 726-753 7-35 (449)
103 COG0489 Mrp ATPases involved i 84.3 1.5 3.2E-05 50.3 5.5 117 719-840 56-191 (265)
104 PRK13705 plasmid-partitioning 83.7 1.7 3.8E-05 52.4 6.0 55 698-752 82-141 (388)
105 cd03114 ArgK-like The function 82.8 6.7 0.00015 40.9 9.2 132 111-267 2-145 (148)
106 cd03114 ArgK-like The function 82.3 6.2 0.00013 41.1 8.7 57 814-880 89-146 (148)
107 PRK05632 phosphate acetyltrans 81.0 4.5 9.8E-05 52.4 8.6 26 729-755 14-39 (684)
108 PHA02519 plasmid partition pro 80.9 2.6 5.6E-05 50.9 6.0 55 698-752 82-141 (387)
109 PRK00784 cobyric acid synthase 80.4 4.6 9.9E-05 50.2 8.1 34 721-754 3-39 (488)
110 COG1763 MobB Molybdopterin-gua 79.7 1.8 4E-05 46.0 3.8 37 720-756 2-40 (161)
111 TIGR03172 probable selenium-de 78.5 2.3 5E-05 47.8 4.2 36 110-145 1-36 (232)
112 TIGR00379 cobB cobyrinic acid 77.7 3.6 7.7E-05 50.7 6.0 28 114-141 7-35 (449)
113 PRK00652 lpxK tetraacyldisacch 77.5 5.4 0.00012 47.1 7.1 54 90-143 31-88 (325)
114 PRK14974 cell division protein 77.2 12 0.00026 44.5 9.8 36 720-755 140-177 (336)
115 cd02117 NifH_like This family 77.2 3 6.5E-05 45.7 4.6 31 110-140 2-34 (212)
116 COG1763 MobB Molybdopterin-gua 77.1 2.8 6E-05 44.7 4.1 37 108-144 2-40 (161)
117 COG0489 Mrp ATPases involved i 77.0 5.3 0.00012 45.7 6.7 34 107-140 56-92 (265)
118 PRK00652 lpxK tetraacyldisacch 76.7 4.7 0.0001 47.6 6.3 53 702-754 31-87 (325)
119 PRK10416 signal recognition pa 76.4 3.7 7.9E-05 48.3 5.3 36 720-755 114-151 (318)
120 TIGR01007 eps_fam capsular exo 75.7 5.2 0.00011 43.3 6.0 33 108-140 17-52 (204)
121 TIGR00313 cobQ cobyric acid sy 75.6 6.7 0.00014 48.7 7.5 27 729-755 10-36 (475)
122 cd02117 NifH_like This family 75.2 2.7 5.8E-05 46.1 3.6 31 722-752 2-34 (212)
123 PRK10416 signal recognition pa 75.0 7 0.00015 46.0 7.1 37 107-143 113-151 (318)
124 cd01983 Fer4_NifH The Fer4_Nif 74.4 4 8.7E-05 37.4 4.1 31 111-141 2-34 (99)
125 PRK05632 phosphate acetyltrans 72.4 18 0.00039 47.0 10.6 34 110-144 4-40 (684)
126 COG1072 CoaA Panthothenate kin 72.4 9.7 0.00021 43.8 7.1 35 109-143 83-121 (283)
127 cd01983 Fer4_NifH The Fer4_Nif 72.2 3.6 7.7E-05 37.8 3.2 31 723-753 2-34 (99)
128 PRK13869 plasmid-partitioning 71.9 8 0.00017 47.0 6.9 55 86-140 87-156 (405)
129 TIGR03018 pepcterm_TyrKin exop 71.3 9.9 0.00021 41.5 6.9 35 106-140 33-71 (207)
130 KOG0780|consensus 70.6 10 0.00022 45.5 6.9 36 107-142 100-137 (483)
131 cd02040 NifH NifH gene encodes 70.3 5.4 0.00012 44.9 4.7 32 109-140 2-35 (270)
132 COG1072 CoaA Panthothenate kin 70.0 11 0.00025 43.3 7.0 36 720-755 82-121 (283)
133 PF00448 SRP54: SRP54-type pro 69.9 4.6 0.0001 44.2 3.9 34 110-144 6-39 (196)
134 PHA02518 ParA-like protein; Pr 69.0 6.3 0.00014 42.5 4.6 32 110-141 2-36 (211)
135 COG1618 Predicted nucleotide k 68.9 7.3 0.00016 41.6 4.8 43 110-159 7-51 (179)
136 cd02035 ArsA ArsA ATPase funct 68.8 20 0.00043 39.6 8.6 97 727-827 8-124 (217)
137 TIGR03371 cellulose_yhjQ cellu 68.7 6.4 0.00014 43.6 4.7 33 109-141 2-37 (246)
138 PRK13869 plasmid-partitioning 68.7 8.1 0.00018 47.0 6.0 35 718-752 119-156 (405)
139 TIGR01007 eps_fam capsular exo 68.7 6.8 0.00015 42.4 4.9 33 720-752 17-52 (204)
140 TIGR00064 ftsY signal recognit 68.1 12 0.00026 43.1 6.9 36 719-754 71-108 (272)
141 PRK13235 nifH nitrogenase redu 68.1 6.6 0.00014 44.8 4.8 32 109-140 2-35 (274)
142 PF03205 MobB: Molybdopterin g 67.8 6.8 0.00015 40.6 4.4 34 109-142 1-36 (140)
143 COG1797 CobB Cobyrinic acid a, 67.4 11 0.00024 45.8 6.5 30 723-752 3-35 (451)
144 PRK06761 hypothetical protein; 67.2 39 0.00084 39.3 10.7 161 109-289 4-208 (282)
145 COG0132 BioD Dethiobiotin synt 67.0 7 0.00015 43.8 4.5 34 108-141 2-38 (223)
146 cd02032 Bchl_like This family 66.9 6.7 0.00015 44.4 4.6 31 110-140 2-34 (267)
147 TIGR03453 partition_RepA plasm 66.8 33 0.00072 41.3 10.6 55 86-140 72-139 (387)
148 TIGR03018 pepcterm_TyrKin exop 66.6 11 0.00023 41.2 5.9 35 718-752 33-71 (207)
149 cd02035 ArsA ArsA ATPase funct 66.5 24 0.00053 38.9 8.7 28 115-142 8-35 (217)
150 PHA02518 ParA-like protein; Pr 66.4 5.7 0.00012 42.8 3.7 31 722-752 2-35 (211)
151 COG2403 Predicted GTPase [Gene 66.0 7.1 0.00015 46.4 4.5 123 721-856 127-263 (449)
152 TIGR00064 ftsY signal recognit 65.9 9.9 0.00021 43.8 5.7 37 107-143 71-109 (272)
153 TIGR01968 minD_bact septum sit 65.5 7.6 0.00016 43.3 4.6 32 109-140 2-36 (261)
154 PRK13896 cobyrinic acid a,c-di 65.5 11 0.00023 46.4 6.1 32 723-754 4-38 (433)
155 TIGR01425 SRP54_euk signal rec 65.5 53 0.0012 40.4 11.9 35 720-754 100-136 (429)
156 COG0572 Udk Uridine kinase [Nu 65.2 9.7 0.00021 42.5 5.2 52 107-160 7-66 (218)
157 COG1797 CobB Cobyrinic acid a, 65.2 1.3E+02 0.0027 37.2 14.6 29 110-138 2-33 (451)
158 PRK13235 nifH nitrogenase redu 64.9 6.2 0.00013 45.0 3.8 32 721-752 2-35 (274)
159 TIGR03371 cellulose_yhjQ cellu 64.2 6.5 0.00014 43.6 3.7 32 721-752 2-36 (246)
160 PRK13896 cobyrinic acid a,c-di 63.9 16 0.00036 44.8 7.3 33 110-142 3-38 (433)
161 TIGR03029 EpsG chain length de 63.9 14 0.00031 41.9 6.5 53 87-140 83-138 (274)
162 COG1618 Predicted nucleotide k 63.9 7.8 0.00017 41.4 3.9 35 722-756 7-43 (179)
163 COG0552 FtsY Signal recognitio 63.8 15 0.00033 43.4 6.6 36 107-142 138-175 (340)
164 PRK13849 putative crown gall t 63.6 9.4 0.0002 42.8 4.8 32 109-140 2-36 (231)
165 PRK14494 putative molybdopteri 63.2 7.2 0.00016 43.9 3.8 37 720-756 1-39 (229)
166 TIGR01968 minD_bact septum sit 63.0 7.3 0.00016 43.4 3.8 32 721-752 2-36 (261)
167 COG2403 Predicted GTPase [Gene 62.4 11 0.00024 44.9 5.1 38 107-144 125-165 (449)
168 TIGR00682 lpxK tetraacyldisacc 62.2 18 0.00039 42.6 6.9 55 90-144 10-68 (311)
169 PRK12723 flagellar biosynthesi 61.9 9.4 0.0002 46.2 4.7 35 721-755 175-215 (388)
170 PRK13232 nifH nitrogenase redu 60.9 11 0.00023 43.0 4.7 32 109-140 2-35 (273)
171 TIGR01425 SRP54_euk signal rec 60.9 7.9 0.00017 47.4 3.8 35 108-142 100-136 (429)
172 PRK05439 pantothenate kinase; 60.4 29 0.00063 40.9 8.2 34 108-141 86-123 (311)
173 PRK14494 putative molybdopteri 60.2 11 0.00025 42.3 4.7 37 108-144 1-39 (229)
174 PF00448 SRP54: SRP54-type pro 60.2 8 0.00017 42.3 3.4 33 722-755 6-38 (196)
175 PF03205 MobB: Molybdopterin g 60.1 8.1 0.00018 40.0 3.3 35 721-755 1-37 (140)
176 PRK01906 tetraacyldisaccharide 60.0 21 0.00046 42.5 7.1 54 90-143 38-95 (338)
177 TIGR00682 lpxK tetraacyldisacc 59.9 17 0.00036 42.9 6.1 38 718-755 26-67 (311)
178 COG0132 BioD Dethiobiotin synt 59.7 8.4 0.00018 43.2 3.5 33 720-752 2-37 (223)
179 COG4240 Predicted kinase [Gene 58.4 17 0.00036 41.0 5.4 54 88-141 30-86 (300)
180 TIGR01287 nifH nitrogenase iro 58.0 8.9 0.00019 43.6 3.4 31 722-752 2-34 (275)
181 TIGR03029 EpsG chain length de 57.9 17 0.00036 41.4 5.7 34 719-752 102-138 (274)
182 TIGR00176 mobB molybdopterin-g 57.8 12 0.00025 39.5 4.0 34 110-143 1-36 (155)
183 CHL00175 minD septum-site dete 57.5 12 0.00027 42.6 4.5 33 108-140 15-50 (281)
184 PRK14974 cell division protein 57.5 13 0.00029 44.1 4.9 36 108-143 140-177 (336)
185 COG1663 LpxK Tetraacyldisaccha 56.5 20 0.00043 42.4 5.9 52 701-755 31-86 (336)
186 TIGR01969 minD_arch cell divis 56.5 14 0.00031 40.9 4.7 31 110-140 2-35 (251)
187 TIGR03815 CpaE_hom_Actino heli 56.3 24 0.00053 41.2 6.8 52 87-140 74-128 (322)
188 PRK01906 tetraacyldisaccharide 56.3 21 0.00045 42.5 6.2 53 702-754 38-94 (338)
189 PRK15453 phosphoribulokinase; 56.3 11 0.00024 43.8 3.7 33 719-751 4-38 (290)
190 PF13500 AAA_26: AAA domain; P 55.9 13 0.00028 40.2 4.1 32 110-141 2-36 (199)
191 PRK13234 nifH nitrogenase redu 55.6 16 0.00034 42.5 5.0 38 107-144 3-43 (295)
192 PF02606 LpxK: Tetraacyldisacc 55.4 28 0.00061 41.2 7.1 55 90-144 17-75 (326)
193 PF00485 PRK: Phosphoribulokin 55.2 8.8 0.00019 41.5 2.7 27 722-748 1-29 (194)
194 PRK14495 putative molybdopteri 55.1 11 0.00025 46.0 3.8 37 720-756 1-39 (452)
195 PF13500 AAA_26: AAA domain; P 54.9 9.9 0.00022 41.1 3.0 31 722-752 2-35 (199)
196 COG4240 Predicted kinase [Gene 54.8 22 0.00047 40.1 5.5 55 699-753 29-86 (300)
197 PRK10037 cell division protein 54.8 16 0.00035 41.1 4.8 32 109-140 2-36 (250)
198 PRK13849 putative crown gall t 54.7 13 0.00028 41.7 4.0 32 721-752 2-36 (231)
199 PRK06278 cobyrinic acid a,c-di 54.3 21 0.00045 44.5 5.9 33 718-753 236-271 (476)
200 COG0541 Ffh Signal recognition 54.2 21 0.00046 43.5 5.8 35 109-143 101-137 (451)
201 COG1663 LpxK Tetraacyldisaccha 54.2 24 0.00052 41.8 6.1 54 88-144 30-87 (336)
202 PRK13232 nifH nitrogenase redu 54.1 12 0.00026 42.6 3.7 32 721-752 2-35 (273)
203 PRK06761 hypothetical protein; 53.9 1.3E+02 0.0028 35.1 11.9 63 721-785 4-68 (282)
204 PRK11670 antiporter inner memb 53.6 16 0.00035 43.9 4.8 33 108-140 107-142 (369)
205 PRK07667 uridine kinase; Provi 53.5 20 0.00044 38.8 5.2 36 721-756 18-55 (193)
206 PRK10818 cell division inhibit 53.5 16 0.00034 41.4 4.5 32 109-140 3-37 (270)
207 PRK00090 bioD dithiobiotin syn 53.4 16 0.00034 40.2 4.3 25 117-141 11-35 (222)
208 PF02606 LpxK: Tetraacyldisacc 53.2 28 0.00061 41.2 6.6 54 703-756 18-75 (326)
209 CHL00175 minD septum-site dete 53.0 13 0.00028 42.4 3.7 33 720-752 15-50 (281)
210 PRK15453 phosphoribulokinase; 52.8 18 0.0004 42.0 4.8 33 107-139 4-38 (290)
211 PRK12723 flagellar biosynthesi 52.8 11 0.00025 45.5 3.3 32 111-143 180-215 (388)
212 TIGR01287 nifH nitrogenase iro 52.6 17 0.00036 41.4 4.5 31 110-140 2-34 (275)
213 PRK06278 cobyrinic acid a,c-di 51.9 45 0.00099 41.6 8.3 32 107-141 237-271 (476)
214 PF00485 PRK: Phosphoribulokin 51.8 15 0.00034 39.6 3.9 27 110-136 1-29 (194)
215 PRK14495 putative molybdopteri 51.3 19 0.0004 44.3 4.7 37 108-144 1-39 (452)
216 PRK11670 antiporter inner memb 51.1 15 0.00032 44.2 3.9 33 720-752 107-142 (369)
217 PRK12374 putative dithiobiotin 50.9 19 0.00041 40.2 4.5 32 110-141 4-38 (231)
218 TIGR02016 BchX chlorophyllide 50.8 19 0.00042 41.9 4.7 31 110-140 2-34 (296)
219 PRK00784 cobyric acid synthase 50.6 15 0.00033 45.7 4.1 34 109-142 3-39 (488)
220 cd03116 MobB Molybdenum is an 50.6 17 0.00037 38.6 3.8 34 721-754 2-37 (159)
221 cd03116 MobB Molybdenum is an 50.6 22 0.00049 37.6 4.7 34 109-142 2-37 (159)
222 PLN03046 D-glycerate 3-kinase; 50.6 35 0.00075 41.9 6.8 33 720-752 212-246 (460)
223 TIGR03453 partition_RepA plasm 49.9 16 0.00036 43.9 4.1 35 718-752 102-139 (387)
224 cd02040 NifH NifH gene encodes 49.8 15 0.00031 41.5 3.4 27 726-752 9-35 (270)
225 PRK07667 uridine kinase; Provi 49.8 35 0.00076 37.0 6.2 36 109-144 18-55 (193)
226 COG3367 Uncharacterized conser 49.7 45 0.00097 39.3 7.2 37 719-755 147-186 (339)
227 PRK10818 cell division inhibit 49.7 15 0.00033 41.5 3.6 32 721-752 3-37 (270)
228 PRK13230 nitrogenase reductase 49.6 20 0.00044 40.9 4.6 32 109-140 2-35 (279)
229 PRK10037 cell division protein 49.6 16 0.00035 41.0 3.8 32 721-752 2-36 (250)
230 COG0572 Udk Uridine kinase [Nu 49.2 17 0.00038 40.6 3.8 52 719-772 7-66 (218)
231 PRK13233 nifH nitrogenase redu 49.1 16 0.00035 41.5 3.7 32 721-752 3-37 (275)
232 PRK12374 putative dithiobiotin 49.0 16 0.00034 40.8 3.5 30 723-752 5-37 (231)
233 PF01656 CbiA: CobQ/CobB/MinD/ 48.9 20 0.00043 37.9 4.1 31 111-141 4-34 (195)
234 PRK13185 chlL protochlorophyll 48.9 22 0.00047 40.4 4.6 32 109-140 3-36 (270)
235 cd03115 SRP The signal recogni 48.7 58 0.0013 34.2 7.6 34 722-755 2-37 (173)
236 PRK05439 pantothenate kinase; 48.1 61 0.0013 38.2 8.2 35 719-753 85-123 (311)
237 PRK10867 signal recognition pa 48.1 46 0.00099 41.1 7.4 35 720-754 100-137 (433)
238 TIGR00959 ffh signal recogniti 47.5 1.6E+02 0.0034 36.5 11.8 35 109-143 100-137 (428)
239 PF01656 CbiA: CobQ/CobB/MinD/ 47.3 19 0.0004 38.1 3.6 32 722-753 3-34 (195)
240 cd02036 MinD Bacterial cell di 47.2 21 0.00045 37.2 3.9 29 112-140 6-34 (179)
241 cd02036 MinD Bacterial cell di 47.1 19 0.0004 37.6 3.5 31 722-752 4-34 (179)
242 PRK14493 putative bifunctional 46.8 25 0.00055 40.6 4.8 35 108-143 1-37 (274)
243 PRK06995 flhF flagellar biosyn 46.5 39 0.00085 42.2 6.6 36 107-142 255-294 (484)
244 TIGR03499 FlhF flagellar biosy 46.2 36 0.00078 39.3 5.9 37 107-143 193-233 (282)
245 COG2894 MinD Septum formation 45.8 24 0.00053 39.5 4.2 32 721-752 3-37 (272)
246 cd02033 BchX Chlorophyllide re 45.4 28 0.00061 41.3 5.0 35 106-140 29-65 (329)
247 PRK14493 putative bifunctional 45.3 20 0.00043 41.4 3.7 35 720-755 1-37 (274)
248 COG2894 MinD Septum formation 45.2 24 0.00051 39.7 3.9 33 109-141 3-38 (272)
249 TIGR00176 mobB molybdopterin-g 44.9 18 0.00039 38.0 3.0 34 722-755 1-36 (155)
250 PRK10867 signal recognition pa 44.9 1.5E+02 0.0032 36.8 11.1 36 108-143 100-138 (433)
251 PRK11889 flhF flagellar biosyn 44.9 45 0.00097 40.8 6.5 34 109-142 242-277 (436)
252 PF13604 AAA_30: AAA domain; P 44.7 29 0.00062 37.9 4.6 35 108-143 20-55 (196)
253 PRK00090 bioD dithiobiotin syn 44.3 20 0.00043 39.4 3.3 25 729-753 11-35 (222)
254 cd02025 PanK Pantothenate kina 44.2 25 0.00053 39.2 4.1 23 110-132 1-25 (220)
255 PF07755 DUF1611: Protein of u 44.0 34 0.00074 40.1 5.2 37 719-755 111-150 (301)
256 PF09140 MipZ: ATPase MipZ; I 43.9 27 0.00059 39.9 4.3 32 110-141 2-36 (261)
257 PRK13233 nifH nitrogenase redu 43.8 28 0.0006 39.7 4.5 32 109-140 3-37 (275)
258 PF07015 VirC1: VirC1 protein; 43.8 33 0.00072 38.7 4.9 43 721-763 2-50 (231)
259 TIGR00959 ffh signal recogniti 42.5 4.8E+02 0.01 32.3 14.9 35 720-754 99-136 (428)
260 cd02029 PRK_like Phosphoribulo 42.4 28 0.0006 40.3 4.2 32 110-141 1-34 (277)
261 COG1936 Predicted nucleotide k 41.5 24 0.00052 38.2 3.2 24 110-137 2-27 (180)
262 PF13614 AAA_31: AAA domain; P 41.4 35 0.00077 34.9 4.5 32 109-140 1-35 (157)
263 cd02028 UMPK_like Uridine mono 41.1 24 0.00052 37.9 3.3 33 722-754 1-35 (179)
264 PRK00771 signal recognition pa 40.9 51 0.0011 40.7 6.4 36 108-143 95-132 (437)
265 TIGR00554 panK_bact pantothena 40.7 32 0.00069 40.2 4.4 26 108-133 62-89 (290)
266 PRK14491 putative bifunctional 40.4 29 0.00062 44.5 4.3 39 718-756 8-48 (597)
267 COG1936 Predicted nucleotide k 40.1 21 0.00045 38.7 2.5 24 722-749 2-27 (180)
268 KOG3022|consensus 40.1 34 0.00074 39.6 4.3 44 109-152 48-101 (300)
269 PRK14491 putative bifunctional 40.0 40 0.00088 43.2 5.5 40 105-144 7-48 (597)
270 TIGR01281 DPOR_bchL light-inde 39.9 27 0.00059 39.5 3.7 27 114-140 8-34 (268)
271 COG0541 Ffh Signal recognition 39.8 69 0.0015 39.3 7.0 36 720-755 100-137 (451)
272 PRK13231 nitrogenase reductase 39.2 20 0.00044 40.5 2.5 31 109-140 3-35 (264)
273 PRK00771 signal recognition pa 38.9 45 0.00098 41.1 5.5 36 720-755 95-132 (437)
274 PRK14489 putative bifunctional 38.9 42 0.00091 40.3 5.2 38 719-756 204-243 (366)
275 cd02032 Bchl_like This family 38.6 24 0.00051 40.0 2.9 30 723-752 3-34 (267)
276 PF13614 AAA_31: AAA domain; P 38.4 31 0.00068 35.3 3.5 32 721-752 1-35 (157)
277 TIGR01281 DPOR_bchL light-inde 38.0 24 0.00051 40.0 2.8 27 726-752 8-34 (268)
278 PRK13886 conjugal transfer pro 37.9 2.3E+02 0.0051 32.3 10.5 27 114-140 11-37 (241)
279 cd00550 ArsA_ATPase Oxyanion-t 37.8 90 0.0019 35.5 7.4 97 727-824 9-132 (254)
280 cd03109 DTBS Dethiobiotin synt 37.6 26 0.00056 35.8 2.7 25 729-753 10-34 (134)
281 cd02028 UMPK_like Uridine mono 37.1 41 0.00089 36.1 4.3 33 110-142 1-35 (179)
282 TIGR00313 cobQ cobyric acid sy 36.9 30 0.00065 43.1 3.6 31 113-143 3-36 (475)
283 PRK13236 nitrogenase reductase 36.9 33 0.00071 39.9 3.8 34 107-140 5-40 (296)
284 PRK14489 putative bifunctional 36.9 70 0.0015 38.4 6.6 57 86-144 185-243 (366)
285 cd02029 PRK_like Phosphoribulo 36.8 29 0.00062 40.2 3.2 32 722-753 1-34 (277)
286 cd03109 DTBS Dethiobiotin synt 36.4 36 0.00078 34.7 3.6 30 112-141 4-34 (134)
287 COG4615 PvdE ABC-type sideroph 36.3 29 0.00062 42.0 3.1 45 108-167 349-395 (546)
288 PF07015 VirC1: VirC1 protein; 35.8 49 0.0011 37.4 4.7 33 109-141 2-37 (231)
289 cd02042 ParA ParA and ParB of 35.4 50 0.0011 31.5 4.2 32 110-141 4-35 (104)
290 PRK12724 flagellar biosynthesi 35.3 33 0.00072 42.0 3.5 35 109-143 224-261 (432)
291 COG4615 PvdE ABC-type sideroph 35.2 28 0.00062 42.1 2.8 47 718-779 347-395 (546)
292 PF05378 Hydant_A_N: Hydantoin 34.8 82 0.0018 34.0 6.1 43 733-775 63-132 (176)
293 cd02033 BchX Chlorophyllide re 34.6 42 0.0009 39.9 4.1 35 718-752 29-65 (329)
294 COG0552 FtsY Signal recognitio 34.6 40 0.00087 40.0 3.9 35 719-753 138-174 (340)
295 cd02042 ParA ParA and ParB of 34.6 42 0.00092 32.0 3.5 31 722-752 4-34 (104)
296 CHL00072 chlL photochlorophyll 34.6 37 0.00081 39.4 3.7 26 115-140 9-34 (290)
297 PF05378 Hydant_A_N: Hydantoin 34.4 73 0.0016 34.4 5.6 27 121-147 63-89 (176)
298 PLN02796 D-glycerate 3-kinase 34.3 57 0.0012 39.0 5.2 32 109-140 101-134 (347)
299 PF02374 ArsA_ATPase: Anion-tr 34.2 1.2E+02 0.0027 35.5 7.9 102 726-827 9-137 (305)
300 PF06564 YhjQ: YhjQ protein; 34.2 44 0.00094 38.1 4.0 30 110-139 6-35 (243)
301 COG0455 flhG Antiactivator of 33.7 38 0.00082 39.0 3.5 131 721-851 3-148 (262)
302 PRK06995 flhF flagellar biosyn 33.6 64 0.0014 40.4 5.6 36 719-754 255-294 (484)
303 PRK13236 nitrogenase reductase 33.5 32 0.0007 39.9 3.0 38 719-756 5-45 (296)
304 PF13604 AAA_30: AAA domain; P 33.4 50 0.0011 36.0 4.2 30 723-753 24-53 (196)
305 cd00550 ArsA_ATPase Oxyanion-t 33.3 1.9E+02 0.0041 32.9 9.1 28 115-142 9-36 (254)
306 PRK13234 nifH nitrogenase redu 33.1 42 0.00092 38.9 3.9 38 719-756 3-43 (295)
307 PRK13230 nitrogenase reductase 33.1 30 0.00065 39.5 2.6 32 721-752 2-35 (279)
308 cd01672 TMPK Thymidine monopho 33.0 46 0.001 35.1 3.9 34 722-755 2-37 (200)
309 TIGR02880 cbbX_cfxQ probable R 32.9 91 0.002 36.1 6.5 44 91-136 43-88 (284)
310 CHL00072 chlL photochlorophyll 32.7 33 0.00072 39.8 2.9 27 726-752 8-34 (290)
311 PRK10751 molybdopterin-guanine 32.7 43 0.00093 36.2 3.5 36 719-754 5-42 (173)
312 PRK09841 cryptic autophosphory 32.6 78 0.0017 41.6 6.5 34 107-140 530-566 (726)
313 PF06564 YhjQ: YhjQ protein; 32.1 41 0.0009 38.3 3.4 30 722-751 6-35 (243)
314 PRK10751 molybdopterin-guanine 32.0 67 0.0014 34.7 4.8 36 107-142 5-42 (173)
315 cd02037 MRP-like MRP (Multiple 32.0 48 0.001 34.8 3.8 26 115-140 9-34 (169)
316 COG3640 CooC CO dehydrogenase 31.7 69 0.0015 36.4 4.9 64 722-792 2-68 (255)
317 TIGR02016 BchX chlorophyllide 31.6 34 0.00075 39.8 2.8 27 726-752 8-34 (296)
318 TIGR00347 bioD dethiobiotin sy 31.5 51 0.0011 34.4 3.8 24 117-140 9-32 (166)
319 cd02037 MRP-like MRP (Multiple 31.2 44 0.00096 35.1 3.3 27 726-752 8-34 (169)
320 TIGR01969 minD_arch cell divis 30.7 44 0.00096 37.0 3.4 31 722-752 2-35 (251)
321 PF10662 PduV-EutP: Ethanolami 30.1 2.6E+02 0.0057 29.4 8.6 84 185-281 50-140 (143)
322 PRK09841 cryptic autophosphory 29.9 73 0.0016 41.8 5.6 34 719-752 530-566 (726)
323 PRK05703 flhF flagellar biosyn 29.9 80 0.0017 38.8 5.6 35 109-143 222-260 (424)
324 TIGR00347 bioD dethiobiotin sy 29.9 46 0.00099 34.7 3.1 24 729-752 9-32 (166)
325 PRK11889 flhF flagellar biosyn 29.9 78 0.0017 38.8 5.3 34 721-754 242-277 (436)
326 PRK14723 flhF flagellar biosyn 29.7 97 0.0021 40.9 6.5 35 109-143 186-224 (767)
327 PRK13185 chlL protochlorophyll 29.6 40 0.00086 38.2 2.8 32 721-752 3-36 (270)
328 PRK13886 conjugal transfer pro 29.4 2.9E+02 0.0063 31.6 9.5 28 725-752 10-37 (241)
329 KOG3022|consensus 29.3 44 0.00095 38.7 3.0 44 721-764 48-101 (300)
330 PRK11519 tyrosine kinase; Prov 29.2 1E+02 0.0022 40.5 6.7 34 107-140 525-561 (719)
331 TIGR00455 apsK adenylylsulfate 29.1 1.5E+02 0.0033 31.5 7.0 34 721-754 19-54 (184)
332 PRK06696 uridine kinase; Valid 29.1 59 0.0013 36.0 4.0 32 720-751 22-55 (223)
333 PRK14721 flhF flagellar biosyn 28.8 1.1E+02 0.0023 37.8 6.3 38 107-144 190-231 (420)
334 PF09140 MipZ: ATPase MipZ; I 28.6 37 0.0008 38.9 2.2 31 722-752 2-35 (261)
335 COG3367 Uncharacterized conser 28.5 1.4E+02 0.003 35.5 6.8 38 107-144 147-187 (339)
336 COG0003 ArsA Predicted ATPase 28.1 2.4E+02 0.0052 33.6 8.9 103 109-212 3-133 (322)
337 PF01225 Mur_ligase: Mur ligas 27.9 3.7 8E-05 38.2 -4.9 39 11-49 1-39 (83)
338 cd01672 TMPK Thymidine monopho 27.8 86 0.0019 33.0 4.9 35 110-144 2-38 (200)
339 PRK09518 bifunctional cytidyla 27.6 3.2E+02 0.0069 36.0 10.8 21 110-130 3-25 (712)
340 cd02034 CooC The accessory pro 27.5 73 0.0016 31.9 3.9 28 115-142 8-35 (116)
341 PRK11519 tyrosine kinase; Prov 27.5 86 0.0019 41.1 5.7 34 719-752 525-561 (719)
342 TIGR03815 CpaE_hom_Actino heli 26.7 95 0.0021 36.4 5.3 51 700-752 75-128 (322)
343 PRK06696 uridine kinase; Valid 26.6 82 0.0018 34.8 4.6 32 108-139 22-55 (223)
344 cd03111 CpaE_like This protein 26.5 76 0.0017 31.0 3.8 27 114-140 8-35 (106)
345 COG0125 Tmk Thymidylate kinase 26.4 39 0.00085 37.5 2.0 36 109-144 4-41 (208)
346 COG3954 PrkB Phosphoribulokina 26.1 41 0.00089 36.9 1.9 28 719-746 4-33 (289)
347 cd02025 PanK Pantothenate kina 25.8 57 0.0012 36.3 3.1 23 722-744 1-25 (220)
348 cd03111 CpaE_like This protein 25.6 69 0.0015 31.3 3.3 30 723-752 5-35 (106)
349 cd03115 SRP The signal recogni 25.5 1.1E+02 0.0023 32.2 5.0 35 110-144 2-38 (173)
350 PLN03046 D-glycerate 3-kinase; 25.5 1.1E+02 0.0023 37.9 5.4 43 109-163 213-257 (460)
351 PRK09270 nucleoside triphospha 24.8 1E+02 0.0022 34.3 4.8 30 107-136 32-63 (229)
352 cd02034 CooC The accessory pro 24.7 68 0.0015 32.1 3.2 28 727-754 8-35 (116)
353 PLN02974 adenosylmethionine-8- 24.7 81 0.0017 42.0 4.6 34 107-140 26-62 (817)
354 PRK12377 putative replication 24.4 80 0.0017 36.0 4.0 34 110-144 106-139 (248)
355 PF02374 ArsA_ATPase: Anion-tr 24.4 77 0.0017 37.2 4.0 29 114-142 9-37 (305)
356 PF07755 DUF1611: Protein of u 24.0 90 0.002 36.7 4.4 38 107-144 111-151 (301)
357 TIGR03707 PPK2_P_aer polyphosp 23.8 1E+02 0.0022 34.9 4.6 67 700-788 18-86 (230)
358 PF06418 CTP_synth_N: CTP synt 23.8 85 0.0018 36.3 3.9 32 109-140 2-37 (276)
359 KOG0780|consensus 23.7 82 0.0018 38.2 3.9 35 720-754 101-137 (483)
360 PRK07413 hypothetical protein; 23.3 1.8E+02 0.0039 35.4 6.7 35 710-747 193-227 (382)
361 PRK10536 hypothetical protein; 23.3 1.2E+02 0.0026 35.0 5.1 65 110-178 79-145 (262)
362 PRK12726 flagellar biosynthesi 23.2 1.7E+02 0.0037 35.8 6.6 37 107-143 205-243 (407)
363 TIGR01005 eps_transp_fam exopo 23.1 1.3E+02 0.0028 39.7 6.1 34 107-140 545-581 (754)
364 TIGR00041 DTMP_kinase thymidyl 22.8 94 0.002 33.1 4.0 32 721-752 4-37 (195)
365 PRK09270 nucleoside triphospha 22.7 63 0.0014 35.9 2.8 30 719-748 32-63 (229)
366 PRK13231 nitrogenase reductase 22.5 34 0.00073 38.7 0.5 31 721-752 3-35 (264)
367 TIGR01005 eps_transp_fam exopo 22.3 1.3E+02 0.0028 39.7 5.8 34 719-752 545-581 (754)
368 COG0125 Tmk Thymidylate kinase 22.2 71 0.0015 35.5 3.0 36 721-756 4-41 (208)
369 KOG3347|consensus 22.1 60 0.0013 34.6 2.2 23 720-742 7-31 (176)
370 TIGR03499 FlhF flagellar biosy 22.0 1.3E+02 0.0028 34.9 5.1 37 719-755 193-233 (282)
371 COG0455 flhG Antiactivator of 21.9 1E+02 0.0022 35.6 4.2 32 109-140 3-38 (262)
372 PRK05703 flhF flagellar biosyn 21.9 1.3E+02 0.0028 37.1 5.3 36 720-755 221-260 (424)
373 TIGR00017 cmk cytidylate kinas 21.7 3.4E+02 0.0074 30.2 8.2 115 110-238 4-149 (217)
374 COG2805 PilT Tfp pilus assembl 21.5 2.8E+02 0.006 33.0 7.4 76 109-210 126-204 (353)
375 PF13238 AAA_18: AAA domain; P 21.4 68 0.0015 31.2 2.4 18 112-130 5-22 (129)
376 PLN02974 adenosylmethionine-8- 21.1 80 0.0017 42.1 3.5 34 719-752 26-62 (817)
377 cd01130 VirB11-like_ATPase Typ 20.9 2.1E+02 0.0046 30.6 6.3 48 701-755 12-61 (186)
378 TIGR00455 apsK adenylylsulfate 20.9 1.4E+02 0.0031 31.7 4.9 34 109-142 19-54 (184)
379 COG1192 Soj ATPases involved i 20.5 1.1E+02 0.0024 34.4 4.1 30 111-140 8-38 (259)
380 cd02023 UMPK Uridine monophosp 20.3 79 0.0017 34.0 2.8 30 722-753 1-32 (198)
381 TIGR00554 panK_bact pantothena 20.2 88 0.0019 36.6 3.3 27 719-745 61-89 (290)
No 1
>KOG2525|consensus
Probab=100.00 E-value=2e-89 Score=786.55 Aligned_cols=471 Identities=39% Similarity=0.642 Sum_probs=397.6
Q ss_pred CCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHH
Q psy15432 47 NKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYC 126 (1255)
Q Consensus 47 ~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l 126 (1255)
.....++|++|+++||+||+|+++|+.+++.++. .+..++++|++||++||+| .|+++|++|||||||||||||+|+
T Consensus 14 ~~~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~--~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGStcaF~ 90 (496)
T KOG2525|consen 14 STISSKTYEDAVRYLNSLQSNAALIEKLRRQDDN--PQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGSTCAFT 90 (496)
T ss_pred ccccchhHHHHHHHHHHHHhHHHhhhhhhhccCC--ccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcchHHHH
Confidence 3456788999999999999999999988876653 3568999999999999999 788999999999999999999999
Q ss_pred HHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCC
Q psy15432 127 ESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 206 (1255)
Q Consensus 127 ~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD 206 (1255)
++||+++|+|||+||||||+++||||+|||+|||++.|++|||+||+++++....+..+|+||+|||++||++|.+++||
T Consensus 91 ~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVd 170 (496)
T KOG2525|consen 91 ESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVD 170 (496)
T ss_pred HHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCc
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccC
Q psy15432 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALN 286 (1255)
Q Consensus 207 ~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~ 286 (1255)
+||+|||+||++|+||+|.+|.+|+||+||+||+++||+|+++|||+||||||.|+|+++++ |+++++++|+++|.+.+
T Consensus 171 vaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~-q~~e~~nvL~~ra~e~~ 249 (496)
T KOG2525|consen 171 VAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVP-QPPEALNVLKERASELG 249 (496)
T ss_pred EEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcC-CcHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ceEEEcCCcceeeecCcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCc
Q psy15432 287 CVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSS 366 (1255)
Q Consensus 287 ~~l~~~~~~~~~~~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1255)
++++.+++.+.+...+. .+++.|.||..|+++|+.++.+|+.+.+...
T Consensus 250 ~~L~~v~p~~~~~ls~~--~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~------------------------------ 297 (496)
T KOG2525|consen 250 VPLFVVPPLEAYELSGV--NLGLIGTHQWSNASLAVQLASEWLIQNGRVA------------------------------ 297 (496)
T ss_pred CCceecCCchhhhhcCC--cccccccchhhhhHHHHHHHHHHHHhcCccc------------------------------
Confidence 99999998776655544 3899999999999999999999975532100
Q ss_pred cCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEe-cCcEEEEccCCCHHHHHHHH
Q psy15432 367 CETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCA 445 (1255)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~-~~~~vilDgAHnp~si~~~l 445 (1255)
.. . ...... -++ +++++..||+++.||||+|++.. ++.+|++|||||++||++|.
T Consensus 298 -------------~~-----~--~~~~~~---~~~-i~~~~l~GL~~~~wPGR~qil~~~~~~~~llDGAHt~eSaea~~ 353 (496)
T KOG2525|consen 298 -------------EG-----V--LDALQT---SGL-IPPAFLSGLASTDWPGRLQILEYGRGVTWLLDGAHTKESAEACA 353 (496)
T ss_pred -------------cc-----C--CCcccc---ccC-CCHHHhcchhhccCCCceEEEecCCCcEEEecCCCCHHHHHHHH
Confidence 00 0 000000 011 47888999999999999999998 67889999999999999999
Q ss_pred HHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhc----cCCCcEEEEcCCCCCCCCCC
Q psy15432 446 KWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ----SNQFEYILVTPNILTNESSP 521 (1255)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~----~~~~d~vi~t~~~~~~~~~~ 521 (1255)
+||++...+... ..-+|++|+|+++||+..+++.|.. ...|+.|+|+|+....+..
T Consensus 354 ~w~~~~~~~~~~-------------------~~~~illfn~t~~~d~~~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~- 413 (496)
T KOG2525|consen 354 KWFRKAVRGLKK-------------------LTSLILLFNCTSDRDPPLLLPLLKPDAVIGTRFSSVVFMPNITSSSPV- 413 (496)
T ss_pred HHHHHHhccCCC-------------------ccceEEEEEecCCcchHhHhHHhccccccccccceEEecccccccCCc-
Confidence 999985433200 0127999999999999999988832 3679999999999887652
Q ss_pred CCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHH
Q psy15432 522 DTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVA 601 (1255)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1255)
... | .++++++.+ ..++.| ..+..+|
T Consensus 414 ~~~--------------d-----------------------------~~~~~~s~~-------~~l~~q----~~L~~~w 439 (496)
T KOG2525|consen 414 GSA--------------D-----------------------------SISLNTSTE-------EQLNWQ----NDLQSVW 439 (496)
T ss_pred cch--------------h-----------------------------hhhccCCch-------HHHHHh----HHHHHHH
Confidence 111 0 112222221 122334 4477778
Q ss_pred hhccC-----CCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeecc
Q psy15432 602 SALSQ-----RSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLIT 652 (1255)
Q Consensus 602 ~~~~~-----~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~~ 652 (1255)
..+.. .....||+++.+|+++++... .+...++||||+|||||+|.++..
T Consensus 440 ~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~-~~s~~~~V~gslhlvg~vl~~l~~ 494 (496)
T KOG2525|consen 440 EELKESEGKTEDPSIVFGSLYLAYELLRDDQ-HLSPRIEVLGSLHLVGGVLVLLDR 494 (496)
T ss_pred HHHhhcCCCceeeeeEeccHHHHHHHHHhcC-CCCCeEEEEEEEEEechHhhhhhc
Confidence 77744 236789999999999999974 455599999999999999988764
No 2
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=6.4e-86 Score=787.05 Aligned_cols=472 Identities=35% Similarity=0.585 Sum_probs=378.6
Q ss_pred CCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHH
Q psy15432 49 EIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCES 128 (1255)
Q Consensus 49 ~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~s 128 (1255)
...++|++|+++|++||++... ....+ . .+++++|+++|++||+|+ +..++++|||||||||||||+|+++
T Consensus 11 ~~~~~y~~a~~~L~sl~~~~~~---~~~~~-~----~~~L~rm~~~L~~LG~p~-~~~~l~vIhVaGTnGKGSt~a~l~s 81 (530)
T PLN02881 11 PTSDSYEEALDALSSLITKKSR---ADPSN-P----GDQFDLLFDYLKILELEE-AISRLKVIHVAGTKGKGSTCTFTES 81 (530)
T ss_pred ccccCHHHHHHHHHhcccchhh---ccccc-c----CCChHHHHHHHHHcCCCc-hhhcCCEEEEeCCCCHHHHHHHHHH
Confidence 4568899999999999988431 11111 1 279999999999999984 4568899999999999999999999
Q ss_pred HHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEE
Q psy15432 129 ILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 208 (1255)
Q Consensus 129 IL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~a 208 (1255)
||+++|+|||+||||||.++||||+|||+||+++.|+++||+||++++.........|+|||++|+|||++|.+++||++
T Consensus 82 iL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~a 161 (530)
T PLN02881 82 ILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVA 161 (530)
T ss_pred HHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999999999976433334699999999999999999999999
Q ss_pred EEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCce
Q psy15432 209 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCV 288 (1255)
Q Consensus 209 VlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~ 288 (1255)
|||||+|||+|+||++.+|+++|||||++||+++||+|+++||++|+||||+|.|+|+++ |+++++++|+++|++++++
T Consensus 162 VlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~-q~~ea~~vl~~~A~e~~a~ 240 (530)
T PLN02881 162 ILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVP 240 (530)
T ss_pred EEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeC-CChHHHHHHHHHHHHhCCc
Confidence 999999999999999989999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred EEEcCCcceeeecCcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccC
Q psy15432 289 LLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCE 368 (1255)
Q Consensus 289 l~~~~~~~~~~~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1255)
++.++....+.+ ..+.++|.|.||..||++|++++..++++.+... .+.
T Consensus 241 l~~v~~~~~~~~--~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~----------------~~~------------- 289 (530)
T PLN02881 241 LQVVEPLDSYGL--SGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE----------------FEA------------- 289 (530)
T ss_pred EEEeccccccee--cccCCCCCChhHHHhHHHHHHHHHHHHhhccccc----------------ccc-------------
Confidence 998875433332 2467899999999999999999999865432100 000
Q ss_pred CCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEe--------cCcEEEEccCCCHHH
Q psy15432 369 TPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK--------NNFKYFLDGAHTTDS 440 (1255)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~--------~~~~vilDgAHnp~s 440 (1255)
. .....+++.+++||++++||||||++.. +++.|||||||||+|
T Consensus 290 --------------------------~--~~~~~l~~~i~~GL~~~~wpGR~e~v~~~~~~~~~~~~~~~~LDGAHNp~s 341 (530)
T PLN02881 290 --------------------------L--LQAGTLPEQFIKGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPES 341 (530)
T ss_pred --------------------------c--cccCCCHHHHHHHHHhCCCCceEEEeccccccccCCCCCeEEEECCCCHHH
Confidence 0 0011237799999999999999999975 456899999999999
Q ss_pred HHHHHHHHHhhhhcccccCccCCCCCCCCCcc--------CCCCCccEEEEEecCCCCChhhhhHHhhc-----cCCCcE
Q psy15432 441 IELCAKWFLRKSEAEASSSRSVSSCPLDPTQS--------KSSNVIQRILVFNVTGERDPTKLLSPLLQ-----SNQFEY 507 (1255)
Q Consensus 441 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ilVfg~~~drD~~~ll~~L~~-----~~~~d~ 507 (1255)
+++|.+||........ ..+...++++. ..+...++++||||++|||+..||+.|.. ...||+
T Consensus 342 ~~~l~~wf~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~ 416 (530)
T PLN02881 342 MEACARWFSSAIKGDE-----QSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKK 416 (530)
T ss_pred HHHHHHHHHHHhcccc-----cCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCe
Confidence 9999999987543110 00000011110 01122478999999999999999999962 356999
Q ss_pred EEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCccccccc
Q psy15432 508 ILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNV 587 (1255)
Q Consensus 508 vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1255)
+|||||.+..... .+. +.+. ++.. .+
T Consensus 417 aiF~~n~~~~~~~---~~~----------------------------------------------~~~~---~~~~--~l 442 (530)
T PLN02881 417 ALFVPNISVYNKV---GSG----------------------------------------------LPVD---DPQV--DL 442 (530)
T ss_pred EEEcCCccccCCC---ccc----------------------------------------------CCCc---chhh--hH
Confidence 9999999774431 110 0001 1111 12
Q ss_pred ccccchhhHHHHHHhhcc--C-C---------------------CcEEEcCCHHHHHHHHhccCC---CCCceEEEeccc
Q psy15432 588 NDQSNSFHKIATVASALS--Q-R---------------------SKVVEFSSVLDTYNFKYGLDP---SKEYHILVTGSL 640 (1255)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~--~-~---------------------~~~~~~~si~~ai~~~~~~~~---~~~~~vlvtGSl 640 (1255)
..| +.+++.|+.+. + . .++.||++|++||++++.... +..++|||||||
T Consensus 443 ~~q----~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGSl 518 (530)
T PLN02881 443 SWQ----FTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGSL 518 (530)
T ss_pred HHH----HHHHHHHHHhccccccccccccccccccccccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecch
Confidence 235 56999999994 1 1 489999999999999999863 125799999999
Q ss_pred ccccccceeecc
Q psy15432 641 HLVGAFLNVLIT 652 (1255)
Q Consensus 641 hLVGgvL~~l~~ 652 (1255)
|||||+|.++.+
T Consensus 519 hLvG~~l~~l~~ 530 (530)
T PLN02881 519 HLVGDVLRLLKK 530 (530)
T ss_pred hhhhHHHHHhcC
Confidence 999999988753
No 3
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=7.3e-84 Score=834.47 Aligned_cols=820 Identities=16% Similarity=0.142 Sum_probs=561.4
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHH-HHHHHHhcchhHHHHHhhhcCCCcccccccch
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVD-AIKQLNTLQSNIRTIRESKLRKDPVEMQAVQV 88 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e-ai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 88 (1255)
.++..+..+||++.|+.+||+++|.+.+++.|+.+...++...-.-+ ... ... .. .+.+ .+.|
T Consensus 27 ~~~~~i~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~v~~~~~~--~~~---------~~-~~~~----~i~V 90 (958)
T PRK11929 27 AATADLRLDSREVQPGDLFVACRGAASDGRAFIDQALARGAAAVLVEAEGE--DQV---------AA-ADAL----VLPV 90 (958)
T ss_pred cccceeeeeccCCCCCCEEEEeCCCCCCHHHHHHHHHHcCCEEEEEecccc--ccc---------cC-CCCe----EEEE
Confidence 46778889999999999999999999999998776665543221111 000 000 00 0111 2678
Q ss_pred HHHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhh
Q psy15432 89 DQVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~ 166 (1255)
++++++|+.|+..+++.+ ++++||||||||||||++|+++||+++|+++|+++|.. .++++..+... +
T Consensus 91 ~d~~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~i~~~~i~~~-~-- 160 (958)
T PRK11929 91 ADLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-------ARLDGRLIPGS-L-- 160 (958)
T ss_pred CCHHHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-------ccCCCeeeecC-C--
Confidence 999999999987555554 78999999999999999999999999999999999864 33455544411 1
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeecc----CCccccccccCCccEEEEcCCCcchhhh
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAV 242 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~----GGr~D~tnii~~P~v~vITnIg~DHld~ 242 (1255)
..|.++++.++ |..|.+.++|++|||+|+ +||+|++| |+++|||||+.||+++
T Consensus 161 -----------------t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~----p~iaviTnI~~dHl~~ 217 (958)
T PRK11929 161 -----------------TTPDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGLR----IAVAGFTNLTRDHLDY 217 (958)
T ss_pred -----------------CCCCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCcccccc----cCEEEEeCCCcccccc
Confidence 12344444333 245688999999999985 37888864 5999999999999999
Q ss_pred cCCCHHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc--------------eeeec----
Q psy15432 243 LGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------------NYRWR---- 301 (1255)
Q Consensus 243 lG~Tle~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~--------------~~~~~---- 301 (1255)
|| |+|+|+.+|++||+ ++.++|++. +++.+..++...+....+..+...... .+.+.
T Consensus 218 ~g-t~e~i~~~K~~i~~~~~~~~~~Vln~-dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 295 (958)
T PRK11929 218 HG-TMQDYEEAKAALFSKLPGLGAAVINA-DDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDG 295 (958)
T ss_pred CC-CHHHHHHHHHHHhcCCccCCeEEEEC-CCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCc
Confidence 99 99999999999997 677888887 566555544432222122222211100 11111
Q ss_pred CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCC
Q psy15432 302 GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 381 (1255)
Q Consensus 302 ~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1255)
...+.++++|.||++|+++|++++..+
T Consensus 296 ~~~~~l~l~G~hnv~NalaAia~a~~l----------------------------------------------------- 322 (958)
T PRK11929 296 SYQLVTRLLGRFNVSNLLLVAAALKKL----------------------------------------------------- 322 (958)
T ss_pred eEEEEecCccHhhHHHHHHHHHHHHHc-----------------------------------------------------
Confidence 123678999999999999999988765
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEE----ecCcEEEEccCCCHHHHHHHHHHHHhhhhccc
Q psy15432 382 PGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIR----KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 456 (1255)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~----~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~ 456 (1255)
|++ +++|.+||++++ ||||||++. .+++.+|+||||||+|+++++++++......
T Consensus 323 ------------------gi~-~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~DyahnP~s~~a~l~~l~~~~~~~- 382 (958)
T PRK11929 323 ------------------GLP-LAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDYAHTPDALAKALTALRPVAQAR- 382 (958)
T ss_pred ------------------CCC-HHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEECCCCHHHHHHHHHHHHHhcccC-
Confidence 667 899999999998 999999994 3567899999999999999999998532100
Q ss_pred ccCccCCCCCCCCCccCCCCCccEEEEEecCCCCC--hhhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccc
Q psy15432 457 SSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERD--PTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRF 534 (1255)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD--~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~ 534 (1255)
..++++|||++++|| ++.++..+ +...+|.||+|+++++.++|...... +. .
T Consensus 383 --------------------~~r~i~V~g~g~~r~~~~~~~~~~~-~~~~~d~vi~t~~~pr~e~p~~i~~~----i~-~ 436 (958)
T PRK11929 383 --------------------NGRLVCVFGCGGDRDKGKRPEMGRI-AAELADRVVVTSDNPRSEAPEAIIDQ----IL-A 436 (958)
T ss_pred --------------------CCcEEEEECCCCCCCcchhHHHHHH-HHHhCCEEEEcCCCCCCCCHHHHHHH----HH-h
Confidence 126899999998876 55666666 44568999999999988875322210 00 0
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccC--------
Q psy15432 535 GVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-------- 606 (1255)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 606 (1255)
|+.. .. .+ . ..++.+ +.+..+.+...+
T Consensus 437 ~~~~--------------~~-------~~-------~------~~~d~~-----------~Ai~~a~~~a~~gD~VLv~G 471 (958)
T PRK11929 437 GIPA--------------GA-------RV-------F------VISDRA-----------EAIRQAIWMAAPGDVILIAG 471 (958)
T ss_pred hccC--------------CC-------ce-------E------EECCHH-----------HHHHHHHHhcCCCCEEEEee
Confidence 0000 00 00 0 000000 112111111111
Q ss_pred ---------CCcEEEcCCHHHHHHHHhccC----------------C----CCCceEEEecccccccccceeeccCCCCC
Q psy15432 607 ---------RSKVVEFSSVLDTYNFKYGLD----------------P----SKEYHILVTGSLHLVGAFLNVLITPHASR 657 (1255)
Q Consensus 607 ---------~~~~~~~~si~~ai~~~~~~~----------------~----~~~~~vlvtGSlhLVGgvL~~l~~~ha~~ 657 (1255)
..+...|+|++++.+.+...- + .....=+.+.|+.+..|-|++...+..+.
T Consensus 472 sG~e~~~~~~~~~~~f~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~dSr~v~~g~lFval~G~~~d 551 (958)
T PRK11929 472 KGHETYQEIGGRKLFFDDREWARRALLARISSTLIKLRAAKGGSNSLQINSLPHAGAVSTDSRSVGRGELFVALRGENFD 551 (958)
T ss_pred cCcchheEECCEecCCCHHHHHHHHHHhhhcccccchhhhcCcccccccccCcccCeEEeeCCccCCCCEEEEecCCCCC
Confidence 124556788887766654321 0 01223367788888888888888766433
Q ss_pred CCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHH
Q psy15432 658 SNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAY 737 (1255)
Q Consensus 658 ~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~am 737 (1255)
. .+++...-.+++..--+.+.-...+.+.+.|++++++|+.|+..++...+.++|+||||||||||++|
T Consensus 552 G-----------h~fi~~A~~~GA~~~i~~~~~~~~~~~~i~V~d~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~m 620 (958)
T PRK11929 552 G-----------HDYLPQAFAAGACAAVVERQVADVDLPQIVVDDTRAALGRLATAWRARFSLPVVAITGSNGKTTTKEM 620 (958)
T ss_pred H-----------HHHHHHHHHcCCEEEEECCCccCCCCCEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHH
Confidence 3 33333322222110000000000012347899999999999988877667899999999999999999
Q ss_pred HHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCC
Q psy15432 738 CESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKP 817 (1255)
Q Consensus 738 l~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~v 817 (1255)
+++||+.+|.+.+.+.+++ ++|..+ |.|++ ++ -.+.++
T Consensus 621 l~~iL~~~~~~~~~~~t~g--n~n~~~---g~~~~---------------------------------l~----~~~~~~ 658 (958)
T PRK11929 621 IAAILAAWQGEDRVLATEG--NFNNEI---GVPLT---------------------------------LL----RLRAQH 658 (958)
T ss_pred HHHHHHhcCCCCcEEccCc--ccCCCc---chHHH---------------------------------Hh----cCCCCC
Confidence 9999999987777777776 444433 43321 00 035678
Q ss_pred CEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEEEccCCCChhHHHHHH
Q psy15432 818 DAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLE 892 (1255)
Q Consensus 818 D~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~ 892 (1255)
|++|+|+|++ |.++.+.-+.+|+++|||||+.||+++|| |+|+|+.+|+.||+ +++.+|++. |++....+..
T Consensus 659 ~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~~~~~~Vln~--Dd~~~~~~~~ 735 (958)
T PRK11929 659 RAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALPEDGVAVVNG--DDPYTAIWAK 735 (958)
T ss_pred cEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCCCCCEEEEEC--CcHHHHHHHH
Confidence 9999999998 67777655557999999999999999999 89999999999994 567888886 4544444444
Q ss_pred HhhhcCCeEEEcC--Cc---------c----------cee--cc--CCccccCCCchhHHHHHHHHHHHHHHHHHhhcch
Q psy15432 893 TSRALNCVLLEAP--SI---------L----------NYR--WR--GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKS 947 (1255)
Q Consensus 893 ~A~~~~~~l~~~~--~~---------~----------~~~--~~--~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~ 947 (1255)
.+... .++.++ .. . .+. .. ...+.++++|.||++|+++|++++..
T Consensus 736 ~~~~~--~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~-------- 805 (958)
T PRK11929 736 LAGAR--RVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALA-------- 805 (958)
T ss_pred hhcCC--cEEEEeCCCCcceEeeecccceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHH--------
Confidence 33221 122221 00 0 010 01 12457899999999999999998875
Q ss_pred hhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcC
Q psy15432 948 AELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKAC 1026 (1255)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~ 1026 (1255)
+|++ +++.++|+++
T Consensus 806 -----------------------------------------------------------------lGi~~~~i~~~L~~f 820 (958)
T PRK11929 806 -----------------------------------------------------------------AGASLKQIRAGLERF 820 (958)
T ss_pred -----------------------------------------------------------------cCCCHHHHHHHHhhC
Confidence 4566 6799999999
Q ss_pred C-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC-CChhhhhhhhh-
Q psy15432 1027 V-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE-RDPTKLLSPLL- 1101 (1255)
Q Consensus 1027 ~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d-rD~~~ll~~L~- 1101 (1255)
+ +|||||++.. ++..+|+| |||||+|++++++.++... ..++++|||+|++ +|..+.....|
T Consensus 821 ~~~~gR~e~~~~~~~~~iidDsya~np~s~~aaL~~l~~~~-------------~~~~i~VlG~~~e~g~~~~~~h~~~g 887 (958)
T PRK11929 821 QPVAGRMQRRRLSCGTRIIDDTYNANPDSMRAAIDVLAELP-------------NGPRALVLGDMLELGDNGPAMHREVG 887 (958)
T ss_pred CCCCCCceEEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhcc-------------CCCEEEEECCchhcCcHHHHHHHHHH
Confidence 9 9999999975 56778888 9999999999999998642 1368999999987 56655433211
Q ss_pred ---cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCCCCCCccccccc
Q psy15432 1102 ---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1102 ---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1176 (1255)
.....+.|++.++.+...... +.........+.++.++.+.....+.+++|+||||++.|+++.+.+
T Consensus 888 ~~~~~~~~~~vi~~Ge~~~~i~~~--------~~~~~~~~~~~~~~a~~~~~~~~~~gD~VLlkGSr~~~le~~~~~~ 957 (958)
T PRK11929 888 KYARQLGIDALITLGEAARDAAAA--------FGAGARGVCASVDEIIAALRGALPEGDSVLIKGSRFMRLERVVDAL 957 (958)
T ss_pred HHHHHcCCCEEEEECcCHHHHHHh--------hhcccceeeCCHHHHHHHHHHhcCCCCEEEEEeCccCcHHHHHHhh
Confidence 344578888887655332111 1111112356899999999999999999999999999999988765
No 4
>KOG2525|consensus
Probab=100.00 E-value=4.7e-85 Score=750.49 Aligned_cols=451 Identities=39% Similarity=0.632 Sum_probs=382.0
Q ss_pred CCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHH
Q psy15432 661 EIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCES 740 (1255)
Q Consensus 661 ~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~s 740 (1255)
...++|++|+.+||+||+|.+++++.++.++. .+..++++|+++|+++|+| +|++++++|||||||||||||+|+++
T Consensus 16 ~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~--~~~~~l~~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGStcaF~~S 92 (496)
T KOG2525|consen 16 ISSKTYEDAVRYLNSLQSNAALIEKLRRQDDN--PQGLTLPRMRKLLERLGNP-EDQNSLNIIHVAGTKGKGSTCAFTES 92 (496)
T ss_pred ccchhHHHHHHHHHHHHhHHHhhhhhhhccCC--ccccCHHHHHHHHHHhCCh-hhhhheeEEEEecCCCCcchHHHHHH
Confidence 34578999999999999999999988874421 1347999999999999999 78899999999999999999999999
Q ss_pred HHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEE
Q psy15432 741 ILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 820 (1255)
Q Consensus 741 ILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~a 820 (1255)
|||+.|+|||+||||||+++||||+|||+|||++.|+++||+||++++.....+..||+||+|||++||++|.+++||+|
T Consensus 93 ILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdva 172 (496)
T KOG2525|consen 93 ILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVA 172 (496)
T ss_pred HHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEE
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred EEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCe
Q psy15432 821 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCV 900 (1255)
Q Consensus 821 VlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~ 900 (1255)
|||||+||++|+||+|.+|.+|+||+||+||+++||+|+++|||+||||||.|+|+|+.+ |+++++++++++|.+.+++
T Consensus 173 ViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~-q~~e~~nvL~~ra~e~~~~ 251 (496)
T KOG2525|consen 173 VIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVP-QPPEALNVLKERASELGVP 251 (496)
T ss_pred EEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcC-CcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEcCCccceeccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCC
Q psy15432 901 LLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCE 980 (1255)
Q Consensus 901 l~~~~~~~~~~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1255)
++++++.+.+...+. .+++.|.||..|+.+|++++..|+...+... + +
T Consensus 252 L~~v~p~~~~~ls~~--~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~------------~------------~------ 299 (496)
T KOG2525|consen 252 LFVVPPLEAYELSGV--NLGLIGTHQWSNASLAVQLASEWLIQNGRVA------------E------------G------ 299 (496)
T ss_pred ceecCCchhhhhcCC--cccccccchhhhhHHHHHHHHHHHHhcCccc------------c------------c------
Confidence 999999877666554 3899999999999999999999886532100 0 0
Q ss_pred CCCCCCCccccCCCCCCCCcccccccccCCCCCCCCHHHHHHHhcCCCCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHH
Q psy15432 981 TPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKW 1059 (1255)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~~~i~~gL~~~~~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~ 1059 (1255)
.|+ .... ..+ +|+.+..||+++.||||+|++.. ++++|++||||||+||++|.+|
T Consensus 300 ~~~----------------------~~~~-~~~-i~~~~l~GL~~~~wPGR~qil~~~~~~~~llDGAHt~eSaea~~~w 355 (496)
T KOG2525|consen 300 VLD----------------------ALQT-SGL-IPPAFLSGLASTDWPGRLQILEYGRGVTWLLDGAHTKESAEACAKW 355 (496)
T ss_pred CCC----------------------cccc-ccC-CCHHHhcchhhccCCCceEEEecCCCcEEEecCCCCHHHHHHHHHH
Confidence 000 0000 012 78899999999999999999998 5788999999999999999999
Q ss_pred HHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcC-----CCCcEEEEcCCCCcccccccCCCCCcccccc
Q psy15432 1060 FLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQS-----NQFEYILVTPNILTNEIRWRGQPLDEDWKST 1134 (1255)
Q Consensus 1060 l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~-----~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d 1134 (1255)
|+...... . ....+|++|+|+++||+..++..| .+ ..|+.|+|+|+......... .|
T Consensus 356 ~~~~~~~~--~------~~~~~illfn~t~~~d~~~Ll~~L-~~~~~~~~~F~~Vvf~Pni~~~~~~~~---------~d 417 (496)
T KOG2525|consen 356 FRKAVRGL--K------KLTSLILLFNCTSDRDPPLLLPLL-KPDAVIGTRFSSVVFMPNITSSSPVGS---------AD 417 (496)
T ss_pred HHHHhccC--C------CccceEEEEEecCCcchHhHhHHh-ccccccccccceEEecccccccCCccc---------hh
Confidence 99733211 0 111279999999999999999888 55 78999999999988876554 55
Q ss_pred cccccCCH------HHHHHHHHHHcCCCceEEeecCCCCCCcccccccccccccccc-cccCCcceee
Q psy15432 1135 VQSINISL------AIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEIDPKTYRGIKA-CVWPGRVQVI 1195 (1255)
Q Consensus 1135 ~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 1195 (1255)
..+.+.+. +..+++.|+.+.+.. ...-.-..||.+|..+|+-+.. |--+-|+||+
T Consensus 418 ~~~~~~s~~~~l~~q~~L~~~w~~l~~~~------~~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~ 479 (496)
T KOG2525|consen 418 SISLNTSTEEQLNWQNDLQSVWEELKESE------GKTEDPSIVFGSLYLAYELLRDDQHLSPRIEVL 479 (496)
T ss_pred hhhccCCchHHHHHhHHHHHHHHHHhhcC------CCceeeeeEeccHHHHHHHHHhcCCCCCeEEEE
Confidence 66665554 457888999888744 1111222577888877764333 4445577776
No 5
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=2.2e-76 Score=705.21 Aligned_cols=464 Identities=34% Similarity=0.585 Sum_probs=360.3
Q ss_pred CCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHH
Q psy15432 661 EIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCES 740 (1255)
Q Consensus 661 ~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~s 740 (1255)
...++|++|+++|++++++.+ +....+. .+++++|+++|++||+|+ +.+++++|||||||||||||+|+++
T Consensus 11 ~~~~~y~~a~~~L~sl~~~~~---~~~~~~~-----~~~L~rm~~~L~~LG~p~-~~~~l~vIhVaGTnGKGSt~a~l~s 81 (530)
T PLN02881 11 PTSDSYEEALDALSSLITKKS---RADPSNP-----GDQFDLLFDYLKILELEE-AISRLKVIHVAGTKGKGSTCTFTES 81 (530)
T ss_pred ccccCHHHHHHHHHhcccchh---hcccccc-----CCChHHHHHHHHHcCCCc-hhhcCCEEEEeCCCCHHHHHHHHHH
Confidence 345789999999999998842 1111122 279999999999999984 4567899999999999999999999
Q ss_pred HHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEE
Q psy15432 741 ILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAV 820 (1255)
Q Consensus 741 ILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~a 820 (1255)
||+++|+|||+||||||+++||||+|||+||+++.|+++||+||++++........+|+|||++|+|||++|.+++||++
T Consensus 82 iL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~a 161 (530)
T PLN02881 82 ILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVA 161 (530)
T ss_pred HHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999999999976433345699999999999999999999999
Q ss_pred EEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCe
Q psy15432 821 IMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCV 900 (1255)
Q Consensus 821 VlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~ 900 (1255)
|||||+||++|+||++.+|+++|||||++||+++||+|+++||++|+||||+|.|+|+.+ |+++++++++++|++++++
T Consensus 162 VlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~-q~~ea~~vl~~~A~e~~a~ 240 (530)
T PLN02881 162 ILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVP 240 (530)
T ss_pred EEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeC-CChHHHHHHHHHHHHhCCc
Confidence 999999999999999989999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred EEEcCCccceeccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCC
Q psy15432 901 LLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCE 980 (1255)
Q Consensus 901 l~~~~~~~~~~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1255)
+++++....+.+ ..+.++|.|.||..||++|++++..|+.+.+... .+..
T Consensus 241 l~~v~~~~~~~~--~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~--------------------~~~~-------- 290 (530)
T PLN02881 241 LQVVEPLDSYGL--SGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE--------------------FEAL-------- 290 (530)
T ss_pred EEEeccccccee--cccCCCCCChhHHHhHHHHHHHHHHHHhhccccc--------------------cccc--------
Confidence 998875443333 2467899999999999999999999875431100 0000
Q ss_pred CCCCCCCccccCCCCCCCCcccccccccCCCCCCCCHHHHHHHhcCCCCCcEEEEee--------cCcEEEEEcCcCHHH
Q psy15432 981 TPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK--------NNFKYFLDGAHTTDS 1052 (1255)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~~~i~~gL~~~~~pGR~E~v~~--------~~~~vilDgAHNP~S 1052 (1255)
.....+++.+.+||+++.||||||++.. ++..|||||||||+|
T Consensus 291 -----------------------------~~~~~l~~~i~~GL~~~~wpGR~e~v~~~~~~~~~~~~~~~~LDGAHNp~s 341 (530)
T PLN02881 291 -----------------------------LQAGTLPEQFIKGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPES 341 (530)
T ss_pred -----------------------------cccCCCHHHHHHHHHhCCCCceEEEeccccccccCCCCCeEEEECCCCHHH
Confidence 0002345789999999999999999976 456899999999999
Q ss_pred HHHHHHHHHhhhcccc-CCCccc-------------CCCCCcEEEEEecCCCCChhhhhhhhhc-----CCCCcEEEEcC
Q psy15432 1053 IELCAKWFLRKSEAEA-NPTQSK-------------SSNVIQRILVFNVTGERDPTKLLSPLLQ-----SNQFEYILVTP 1113 (1255)
Q Consensus 1053 ~~a~l~~l~~~~~~~~-~~~~~~-------------~~~~~~~vlVfg~~~drD~~~ll~~L~~-----~~~~d~vi~t~ 1113 (1255)
|++|.+||........ .+..++ .+...++++||||++|||+..||+.|.. ...||+++|||
T Consensus 342 ~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~aiF~~ 421 (530)
T PLN02881 342 MEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVP 421 (530)
T ss_pred HHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCeEEEcC
Confidence 9999999976432110 000000 0122468999999999999999998862 35699999999
Q ss_pred CCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC--CceEEe------ecC-----CCCCCccccccccccc
Q psy15432 1114 NILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN--KSAELK------RNQ-----SSLPMGPHFEIDPKTY 1180 (1255)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~l~------~~~-----~~~~~~~~~~~~~~~~ 1180 (1255)
|.+.........+ .....-..+++..+++.|..+.. ...+.| +++ .......||.++..++
T Consensus 422 n~~~~~~~~~~~~------~~~~~~~l~~q~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~Ai 495 (530)
T PLN02881 422 NISVYNKVGSGLP------VDDPQVDLSWQFTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSAVFPSLPLAI 495 (530)
T ss_pred CccccCCCcccCC------CcchhhhHHHHHHHHHHHHHhccccccccccccccccccccccCCCCCCceeEecCHHHHH
Confidence 9965443211000 11112235777899999999963 222221 111 1222346677777666
Q ss_pred ccccccccCC---cceeeecCc
Q psy15432 1181 RGIKACVWPG---RVQVIRKNN 1199 (1255)
Q Consensus 1181 ~g~~~~~~~~---~~~~~~~~~ 1199 (1255)
.-+..|.-+. |+|++--|-
T Consensus 496 ~~~r~~~~~~~~~~~~vlVTGS 517 (530)
T PLN02881 496 KWLRDCARENPSLRFQVLVTGS 517 (530)
T ss_pred HHHHHHhhhCCCcceEEEEecc
Confidence 5444443322 456655443
No 6
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-75 Score=684.49 Aligned_cols=410 Identities=30% Similarity=0.431 Sum_probs=335.4
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
++|+++.+||..+. .....+ ...++|+||.++|++||+|+ +++++|||+|||||||||+|+++||+
T Consensus 2 ~~~~~~~~wl~~l~-------~~~~~~----~i~~gL~Ri~~ll~~LGnP~---~~~~vIhVaGTNGKGSt~afl~siL~ 67 (427)
T COG0285 2 MSLQELAEWLHYLE-------QLHPKP----GIDLGLERISRLLERLGNPQ---KSPPVIHVAGTNGKGSTCAFLESILR 67 (427)
T ss_pred cchHHHHHHHHHHH-------hcCCCC----cccCChHHHHHHHHHcCCcc---ccCCeEEEeCCCCchhHHHHHHHHHH
Confidence 56777777776543 222222 12368999999999999998 78999999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEe
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 211 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlE 211 (1255)
++|||||.||||||.+++|||+|||++||+++++.++++|.+...... ...|||||++|+|||+||.+.+||++|||
T Consensus 68 ~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlE 144 (427)
T COG0285 68 EAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILE 144 (427)
T ss_pred HcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999999999999999999999999987666554332 36799999999999999999999999999
Q ss_pred eccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEE
Q psy15432 212 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 291 (1255)
Q Consensus 212 vG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~ 291 (1255)
||+|||+|+||+|. |.++|||||++||+++||+|+++||++||||||+|.|+|+...+.|+++.+++++|.+++++++.
T Consensus 145 VGLGGRlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~ 223 (427)
T COG0285 145 VGLGGRLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFV 223 (427)
T ss_pred ccccccccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeee
Confidence 99999999999996 99999999999999999999999999999999999999998856688999999999999999877
Q ss_pred cCCc-------ceeeecC----cccccCCCchh-HHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCC
Q psy15432 292 APSI-------LNYRWRG----QPLDEDWKSTV-QSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPG 359 (1255)
Q Consensus 292 ~~~~-------~~~~~~~----~~i~l~l~G~~-q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (1255)
.+.. ..+.+.+ ..+.+++.|.| |..||++|++++..+-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~------------------------------ 273 (427)
T COG0285 224 LGPDFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALG------------------------------ 273 (427)
T ss_pred cccchhhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhc------------------------------
Confidence 6421 1233332 25778988887 9999999999887760
Q ss_pred CCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHH
Q psy15432 360 GQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTD 439 (1255)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~ 439 (1255)
..++ ++.|.+||+++.||||||++..+ +.|++||||||+
T Consensus 274 ---------------------------------------~~i~-~~~i~~gl~~~~wpGR~e~l~~~-p~i~lDgAHNp~ 312 (427)
T COG0285 274 ---------------------------------------KEIS-EEAIRKGLANVDWPGRLERLSEN-PLILLDGAHNPH 312 (427)
T ss_pred ---------------------------------------ccCC-HHHHHHHHHhCcCCceEEEecCC-CeEEEECCCCHH
Confidence 0245 89999999999999999999876 489999999999
Q ss_pred HHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 440 SIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 440 si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
|++++.++++...... + ++++|||+..|||...|+..| ... |..++|...+....
T Consensus 313 aa~~La~~l~~~~~~~---------------------~-~~~~v~g~l~dKd~~~~l~~L-~~~--~~~~~~~~~~~~ra 367 (427)
T COG0285 313 AARALAETLKTLFNDR---------------------P-RLTLVFGMLKDKDIAGMLAAL-LPI--VDEIYTTPLPWPRA 367 (427)
T ss_pred HHHHHHHHHHHHhccC---------------------C-ceEEEEEeecCCCHHHHHHHh-hcc--CcEEEEccCCCccc
Confidence 9999999999876542 1 289999999999999999999 333 44444443333211
Q ss_pred CCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHH
Q psy15432 520 SPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIAT 599 (1255)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1255)
. + . ..+..
T Consensus 368 ~----~----------------------------------------------------------------~----~~l~~ 375 (427)
T COG0285 368 L----D----------------------------------------------------------------A----EELLA 375 (427)
T ss_pred C----C----------------------------------------------------------------H----HHHHH
Confidence 0 0 0 11222
Q ss_pred HHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeecc
Q psy15432 600 VASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLIT 652 (1255)
Q Consensus 600 ~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~~ 652 (1255)
........ . ++|+++|++.+.... ..+..||||||+|++|.++.++..
T Consensus 376 ~~~~~~~~-~---~~~~~~a~~~~~~~~-~~~~~ilV~GSly~~~ev~~~~~~ 423 (427)
T COG0285 376 FAGERGGV-E---LDDVAEALELALEKA-DEDDLVLVTGSLYLAGEVLELLKK 423 (427)
T ss_pred HHHhhcCC-c---cccHHHHHHHHHHhc-CCCCeEEEEecHHHHHHHHHHhhc
Confidence 22222111 1 789999999998876 346899999999999999877643
No 7
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=1.4e-72 Score=680.96 Aligned_cols=365 Identities=25% Similarity=0.377 Sum_probs=303.4
Q ss_pred CCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccc-----cccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHH
Q psy15432 50 IPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEM-----QAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCA 124 (1255)
Q Consensus 50 ~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a 124 (1255)
...+|+++++||+++++. .+.|.|... ..++|++|+++|++||+|+ .++++|||||||||||||+
T Consensus 22 ~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~---~~~~vIhVaGTNGKGSt~a 91 (510)
T PLN02913 22 EEPELGDFLRYLDSLKNY-------EKSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPH---SKFKAVHVAGTKGKGSTAA 91 (510)
T ss_pred cCcCHHHHHHHHHhhccc-------cccCCccccccccccCCCHHHHHHHHHHcCCch---hhCcEEEEeCCCchHHHHH
Confidence 456899999999998653 111111000 1279999999999999998 5678999999999999999
Q ss_pred HHHHHHHHCCCCeEEEcCCcccccceeEEeC--CeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhc
Q psy15432 125 YCESILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVK 202 (1255)
Q Consensus 125 ~l~sIL~~~G~k~Gl~tSPhL~~~rERI~In--G~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~ 202 (1255)
|+++||+++|||||+||||||.++||||+|| |++|++++|..+|.+|++.+++........|||||++|+|||+||.+
T Consensus 92 ~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~ 171 (510)
T PLN02913 92 FLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQ 171 (510)
T ss_pred HHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999999999999999998865433334699999999999999999
Q ss_pred cCCCEEEEeeccCCccccccccCC--ccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHH
Q psy15432 203 EKPDAVIMEVGIGGRYDNTNIIPN--TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLE 280 (1255)
Q Consensus 203 ~~vD~aVlEvG~GGr~D~tnii~~--P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~ 280 (1255)
++||++|||||+|||+|+||++.. |+++||||||+||+++||+|+|+||++|+||||++.|+|++..+.+++..++++
T Consensus 172 ~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~ 251 (510)
T PLN02913 172 ENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRD 251 (510)
T ss_pred CCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHH
Confidence 999999999999999999999963 599999999999999999999999999999999999999874356778888888
Q ss_pred hhhccCceEEEcC-Ccc-------------eeeec---------------CcccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 281 TSRALNCVLLEAP-SIL-------------NYRWR---------------GQPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 281 ~a~~~~~~l~~~~-~~~-------------~~~~~---------------~~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
.|++++++++.+. ... .+.+. ...+.++|.|.||..|+++|++++..+. +
T Consensus 252 ~a~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~-~ 330 (510)
T PLN02913 252 KASSMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLR-D 330 (510)
T ss_pred HHHHhCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHH-h
Confidence 9988888876652 110 01110 0136688999999999999999887651 1
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
. +.+++ .+.+.+||
T Consensus 331 ~-----------------------------------------------------------------~~~i~-~~~I~~gL 344 (510)
T PLN02913 331 Q-----------------------------------------------------------------GWRIS-DASIRAGL 344 (510)
T ss_pred c-----------------------------------------------------------------CCCCC-HHHHHHHH
Confidence 0 01456 88999999
Q ss_pred hcCCCCCceEEEEe--------cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEE
Q psy15432 412 KACVWPGRVQVIRK--------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILV 483 (1255)
Q Consensus 412 ~~~~~pGR~e~v~~--------~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV 483 (1255)
++++||||||++.. +++.||+||||||+|++++++++++..+. +++++|
T Consensus 345 ~~~~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~~~~-----------------------~ki~~V 401 (510)
T PLN02913 345 ENTNLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPE-----------------------ARLALV 401 (510)
T ss_pred HhCCCCCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHhcCC-----------------------CCEEEE
Confidence 99999999999863 24589999999999999999999763321 268999
Q ss_pred EecCCCCChhhhhHHhhccCCCcEEEEcCCC
Q psy15432 484 FNVTGERDPTKLLSPLLQSNQFEYILVTPNI 514 (1255)
Q Consensus 484 fg~~~drD~~~ll~~L~~~~~~d~vi~t~~~ 514 (1255)
||+++|||+.+|++.+.....+|.+++++..
T Consensus 402 ~gml~DKd~~~~l~~l~~~~~~d~v~~~~~~ 432 (510)
T PLN02913 402 VAMASDKDHLAFASEFLSGLKPEAVFLTEAD 432 (510)
T ss_pred EEccCCCCHHHHHHHHhcccCCCEEEEEcCC
Confidence 9999999999999988333357999888653
No 8
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-71 Score=648.41 Aligned_cols=346 Identities=34% Similarity=0.492 Sum_probs=294.5
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
++|+++.+||..+.. ...++. . .++|+||.++|++||+|+ +.+++|||+|||||||||+|+++||+
T Consensus 2 ~~~~~~~~wl~~l~~-------~~~~~~-i---~~gL~Ri~~ll~~LGnP~---~~~~vIhVaGTNGKGSt~afl~siL~ 67 (427)
T COG0285 2 MSLQELAEWLHYLEQ-------LHPKPG-I---DLGLERISRLLERLGNPQ---KSPPVIHVAGTNGKGSTCAFLESILR 67 (427)
T ss_pred cchHHHHHHHHHHHh-------cCCCCc-c---cCChHHHHHHHHHcCCcc---ccCCeEEEeCCCCchhHHHHHHHHHH
Confidence 456777777765432 222221 1 268999999999999998 78899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEe
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 823 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlE 823 (1255)
++|||||+||||||.++||||+|||+||+++.++.++.+|.......+ ...|||||++|+|||+||.+.+||++|||
T Consensus 68 ~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~---~~~~T~FE~~Ta~Af~~F~~~~vD~aIlE 144 (427)
T COG0285 68 EAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLD---LISLTYFEVLTAMAFLYFAEAKVDVAILE 144 (427)
T ss_pred HcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHHHHHHhcccc---cCCCcHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999999999999999999999999986655543321 46799999999999999999999999999
Q ss_pred cccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEE
Q psy15432 824 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 903 (1255)
Q Consensus 824 VG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~ 903 (1255)
||+|||+|+||+|. |.|+|||+|++||+++||+|+|+||++||||||+|.|+|+...+.++++.+++++|.++++++..
T Consensus 145 VGLGGRlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~ 223 (427)
T COG0285 145 VGLGGRLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFV 223 (427)
T ss_pred ccccccccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeee
Confidence 99999999999996 99999999999999999999999999999999999999999856678999999999999999888
Q ss_pred cCCc-------cceeccC----CccccCCCchh-HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCC
Q psy15432 904 APSI-------LNYRWRG----QPLDEDWKSTV-QSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPG 971 (1255)
Q Consensus 904 ~~~~-------~~~~~~~----~~v~l~L~G~h-q~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1255)
.+.. ..+.+.+ ..+.+++.|.| |..||++|++++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l~------------------------------ 273 (427)
T COG0285 224 LGPDFQVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEALG------------------------------ 273 (427)
T ss_pred cccchhhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHhc------------------------------
Confidence 7521 1233332 25678888888 9999999999988621
Q ss_pred CCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCH
Q psy15432 972 GQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTT 1050 (1255)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP 1050 (1255)
..++ +.|.+||+++.||||||++..++ .+++||||||
T Consensus 274 -----------------------------------------~~i~~~~i~~gl~~~~wpGR~e~l~~~p-~i~lDgAHNp 311 (427)
T COG0285 274 -----------------------------------------KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNP 311 (427)
T ss_pred -----------------------------------------ccCCHHHHHHHHHhCcCCceEEEecCCC-eEEEECCCCH
Confidence 1245 66999999999999999999774 6999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCcccCCCCCc-EEEEEecCCCCChhhhhhhhhcCCCCcEEEEcC
Q psy15432 1051 DSIELCAKWFLRKSEAEANPTQSKSSNVIQ-RILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 1113 (1255)
Q Consensus 1051 ~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~-~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~ 1113 (1255)
+|++++.++++..... .+ +++|||++.|||...|++.| .+. .+.+++++
T Consensus 312 ~aa~~La~~l~~~~~~------------~~~~~~v~g~l~dKd~~~~l~~L-~~~-~~~~~~~~ 361 (427)
T COG0285 312 HAARALAETLKTLFND------------RPRLTLVFGMLKDKDIAGMLAAL-LPI-VDEIYTTP 361 (427)
T ss_pred HHHHHHHHHHHHHhcc------------CCceEEEEEeecCCCHHHHHHHh-hcc-CcEEEEcc
Confidence 9999999999987531 23 78999999999999999999 444 44555554
No 9
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=2e-68 Score=628.78 Aligned_cols=382 Identities=33% Similarity=0.556 Sum_probs=315.9
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
|++|+++|++||+|+ .++++|||||||||||||+|+++||+++|+|||+||||||.++||||+|||++++++.|+.+
T Consensus 1 l~r~~~~l~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~ 77 (397)
T TIGR01499 1 LERMKKLLEALGNPQ---DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQA 77 (397)
T ss_pred ChHHHHHHHHcCCcH---hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHH
Confidence 579999999999997 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCH
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTI 247 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tl 247 (1255)
+++|++..+... ..|++||++|+|||++|.+++||++|||||+|||+|+||++ +|+++|||||++||+++||+|+
T Consensus 78 ~~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~ 152 (397)
T TIGR01499 78 FEQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTL 152 (397)
T ss_pred HHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccH
Confidence 999998876432 36999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc--------ceeeecC-----cccccCCCchhH
Q psy15432 248 EEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--------LNYRWRG-----QPLDEDWKSTVQ 314 (1255)
Q Consensus 248 e~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--------~~~~~~~-----~~i~l~l~G~~q 314 (1255)
|+||++|++||+++.++|++. +++++..++++.+.+.+++++.++.. ..+.+.+ ..+.+++.|.||
T Consensus 153 e~ia~~Ka~I~k~~~~~v~~~-d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 231 (397)
T TIGR01499 153 EEIAWEKAGIIKEGVPIVTGP-QEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQ 231 (397)
T ss_pred HHHHHHHhCccCCCCCEEEcC-CChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHH
Confidence 999999999999999999987 77788888887777666665544321 1122221 135678999999
Q ss_pred HhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccc
Q psy15432 315 SINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSS 394 (1255)
Q Consensus 315 ~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1255)
++|+++|++++..+...
T Consensus 232 ~~N~~~Aiaa~~~lg~~--------------------------------------------------------------- 248 (397)
T TIGR01499 232 AENAALALAALEVLGKQ--------------------------------------------------------------- 248 (397)
T ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 99999999988765100
Q ss_pred cCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCC
Q psy15432 395 LLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKS 474 (1255)
Q Consensus 395 l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1255)
...++ ++.+.+||+++.||||||++..+++.+|+||||||+|+++++++++....+
T Consensus 249 ---~~~i~-~~~i~~~L~~~~~pGR~e~i~~~~~~viiD~AHNp~a~~~~l~~l~~~~~~-------------------- 304 (397)
T TIGR01499 249 ---RPKLS-EEAIRKGLANTIWPGRLEILSEDNPNILLDGAHNPHSAEALAEWFKKRFNG-------------------- 304 (397)
T ss_pred ---cCCCC-HHHHHHHHHhCCCCceEEEEecCCCEEEEECCCCHHHHHHHHHHHHHhcCC--------------------
Confidence 00245 789999999999999999998656789999999999999999999864321
Q ss_pred CCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q psy15432 475 SNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRP 554 (1255)
Q Consensus 475 ~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1255)
+++++|||+++|||+.++++.|+.....|.+++++++|+.+++.+
T Consensus 305 ---~~i~~V~G~~~dkd~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~-------------------------------- 349 (397)
T TIGR01499 305 ---RPIILLFGALADKDAAAMLAPLKPVVDKEVFVTPFDYPRADDAAD-------------------------------- 349 (397)
T ss_pred ---CCeEEEEEeeCCCCHHHHHHHHhhccCcEEEEECCCCCCCCCHHH--------------------------------
Confidence 268899999999999999999842212246677778887665310
Q ss_pred CCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceE
Q psy15432 555 NVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHI 634 (1255)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~v 634 (1255)
|.+..... .+.+++++++||+.+. .. ++++.|
T Consensus 350 ------------------------------------------i~~~~~~~----~~~~~~~~~~ai~~a~-~~-~~~d~v 381 (397)
T TIGR01499 350 ------------------------------------------LAALAETF----GKETVEDWREALALAL-NA-SAEDDI 381 (397)
T ss_pred ------------------------------------------HHHHHHHc----CceecCCHHHHHHHHH-hC-CCCCEE
Confidence 11111111 1457889999999887 43 456789
Q ss_pred EEecccccccccce
Q psy15432 635 LVTGSLHLVGAFLN 648 (1255)
Q Consensus 635 lvtGSlhLVGgvL~ 648 (1255)
||||||||+|.++.
T Consensus 382 lv~GSlyl~~~~~~ 395 (397)
T TIGR01499 382 LVTGSLYLVGEVRK 395 (397)
T ss_pred EEEccHHHHHHHHH
Confidence 99999999999864
No 10
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=4.6e-67 Score=632.93 Aligned_cols=366 Identities=25% Similarity=0.374 Sum_probs=301.9
Q ss_pred CcccHHHHHHHHHhcchhHHHHHHhh-ccCCccc-ccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHH
Q psy15432 662 IPQSYVDAIKQLNTLQSNIRTIRESK-LRKDPVE-MQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCE 739 (1255)
Q Consensus 662 ~~~~y~~a~~~L~~lqsn~~~l~~~~-~~g~~~~-~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~ 739 (1255)
...+|+++++||++++... ++. ++|...+ -..++|+||+++|++||+|+ .++++|||||||||||||+|++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~gL~r~~~ll~~LG~P~---~~~~vIhVaGTNGKGSt~a~l~ 94 (510)
T PLN02913 22 EEPELGDFLRYLDSLKNYE----KSGVPKDAGTDSDDGFDLGRMRRLMDRLGNPH---SKFKAVHVAGTKGKGSTAAFLS 94 (510)
T ss_pred cCcCHHHHHHHHHhhcccc----ccCCccccccccccCCCHHHHHHHHHHcCCch---hhCcEEEEeCCCchHHHHHHHH
Confidence 4568999999999986431 000 0111010 01278999999999999998 5679999999999999999999
Q ss_pred HHHHHCCCCeEEEcCcccccccceeeeC--CeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCC
Q psy15432 740 SILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKP 817 (1255)
Q Consensus 740 sILr~~G~rtGl~tSPhL~~~~ERI~In--G~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~v 817 (1255)
+||+++|||||+||||||+++||||+|| |+||+++.|..++.+|++.+++........|||||++|+|||+||.+++|
T Consensus 95 ~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~v 174 (510)
T PLN02913 95 NILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENV 174 (510)
T ss_pred HHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999 99999999999999999998876433344699999999999999999999
Q ss_pred CEEEEecccCCccccccccCC--CcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhh
Q psy15432 818 DAVIMEVGIGGRYDNTNIIPN--TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSR 895 (1255)
Q Consensus 818 D~aVlEVG~GGr~D~TNvi~~--P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~ 895 (1255)
|++|||||||||+|+||++.. |+++||||||+||+++||+|+|+||++|+||||+++|+|++..+.+++..++.+.|+
T Consensus 175 D~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~ 254 (510)
T PLN02913 175 DIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKAS 254 (510)
T ss_pred CEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHH
Confidence 999999999999999999953 599999999999999999999999999999999999999974356778888888999
Q ss_pred hcCCeEEEcC-Cccc-------------eec-c--------------CCccccCCCchhHHHHHHHHHHHHHHHHHhhcc
Q psy15432 896 ALNCVLLEAP-SILN-------------YRW-R--------------GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 946 (1255)
Q Consensus 896 ~~~~~l~~~~-~~~~-------------~~~-~--------------~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~ 946 (1255)
+.+++++.+. .... +.+ . ...+.++|.|.||..|+++|++++..+...
T Consensus 255 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~--- 331 (510)
T PLN02913 255 SMNSPVVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQ--- 331 (510)
T ss_pred HhCCCEEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc---
Confidence 8888887662 1100 111 0 013668899999999999999988763100
Q ss_pred hhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhc
Q psy15432 947 SAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKA 1025 (1255)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~ 1025 (1255)
+++++ +.+.+||++
T Consensus 332 -----------------------------------------------------------------~~~i~~~~I~~gL~~ 346 (510)
T PLN02913 332 -----------------------------------------------------------------GWRISDASIRAGLEN 346 (510)
T ss_pred -----------------------------------------------------------------CCCCCHHHHHHHHHh
Confidence 03466 679999999
Q ss_pred CCCCCcEEEEee--------cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhh
Q psy15432 1026 CVWPGRVQVIRK--------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLL 1097 (1255)
Q Consensus 1026 ~~~pGR~E~v~~--------~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll 1097 (1255)
++||||||++.. ++..+|+||||||+||++++++++.... .+++++|||+++|||+..|+
T Consensus 347 ~~~pGR~E~i~~~~~~~~~~~~~~vIlDgAHNp~s~~al~~~L~~~~~------------~~ki~~V~gml~DKd~~~~l 414 (510)
T PLN02913 347 TNLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFP------------EARLALVVAMASDKDHLAFA 414 (510)
T ss_pred CCCCCceEEeeccccccccCCCCEEEEECCCCHHHHHHHHHHHHHhcC------------CCCEEEEEEccCCCCHHHHH
Confidence 999999999863 2457999999999999999999976321 14689999999999999999
Q ss_pred hhhhcCCCCcEEEEcCC
Q psy15432 1098 SPLLQSNQFEYILVTPN 1114 (1255)
Q Consensus 1098 ~~L~~~~~~d~vi~t~~ 1114 (1255)
+.+.....+|.+++++.
T Consensus 415 ~~l~~~~~~d~v~~~~~ 431 (510)
T PLN02913 415 SEFLSGLKPEAVFLTEA 431 (510)
T ss_pred HHHhcccCCCEEEEEcC
Confidence 98733335788888764
No 11
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=5.4e-64 Score=594.68 Aligned_cols=393 Identities=24% Similarity=0.364 Sum_probs=313.0
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
++|++++++|+++.+. +. +++|++|+++|+.||+|+ +++++|||||||||||||+|+++||+
T Consensus 11 ~~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~ll~~lg~p~---~~~~~I~VtGTNGKgSt~~~l~~iL~ 72 (416)
T PRK10846 11 SPLASWLSYLENLHSK----------TI-----DLGLERVSQVAARLDLLK---PAPFVFTVAGTNGKGTTCRTLESILM 72 (416)
T ss_pred HHHHHHHHHHHhcccc----------CC-----CCChHHHHHHHHHhCCCc---cCCCEEEEECCCChHHHHHHHHHHHH
Confidence 5688888888876431 21 268999999999999998 67799999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEe
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 211 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlE 211 (1255)
++|+|||+||||||.+++|||+|||++|+++.|++++.+|.+..+. ..|+|||++|++||.+|.+++||++|||
T Consensus 73 ~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~------~~~t~fe~~t~~a~~~f~~~~vd~~VlE 146 (416)
T PRK10846 73 AAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGD------ISLTYFEYGTLSALWLFKQAQLDVVILE 146 (416)
T ss_pred HcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999999999999999999999999999888765532 2589999999999999999999999999
Q ss_pred eccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEE
Q psy15432 212 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 291 (1255)
Q Consensus 212 vG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~ 291 (1255)
||+|||+|+||++ +|+++|||||++||+++||+|+|+||++|++||+++.++|++. ++ ...++.+.+.+.+++++.
T Consensus 147 vglggrld~tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~-~d--~~~~~~~~a~~~~~~~~~ 222 (416)
T PRK10846 147 VGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGE-PD--MPSTIADVAQEKGALLQR 222 (416)
T ss_pred ecCCCCchhhhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECC-cc--HhHHHHHHHHHhCCcEEE
Confidence 9999999999999 6999999999999999999999999999999999999988764 22 234455566666666553
Q ss_pred cCCc-------ceeeecCc---ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCC
Q psy15432 292 APSI-------LNYRWRGQ---PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQ 361 (1255)
Q Consensus 292 ~~~~-------~~~~~~~~---~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1255)
.+.. ..+.+... ...++++ .||..|+++|++++..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~--------------------------------- 268 (416)
T PRK10846 223 RGVDWNYSVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS--------------------------------- 268 (416)
T ss_pred ecceeeeeccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc---------------------------------
Confidence 3211 11111110 1124555 47999999999887653
Q ss_pred CCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHHHH
Q psy15432 362 GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 441 (1255)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~si 441 (1255)
. .+++ .++|++||+++.||||||++...+ .+|+||||||+|+
T Consensus 269 --------------------------------~----~~i~-~~~i~~~L~~~~~~gR~e~~~~~~-~iI~D~AHNp~a~ 310 (416)
T PRK10846 269 --------------------------------G----LEVS-EQAIRDGIASAILPGRFQIVSESP-RVILDVAHNPHAA 310 (416)
T ss_pred --------------------------------C----CCCC-HHHHHHHHHhCCCCceEEEEcCCC-cEEEECCCCHHHH
Confidence 0 1556 899999999999999999998644 6999999999999
Q ss_pred HHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCC-CCCCCC
Q psy15432 442 ELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNI-LTNESS 520 (1255)
Q Consensus 442 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~-~~~~~~ 520 (1255)
+++++.++....+ +++++|||++++||...++..| ...+|.+++++.. ++.+.+
T Consensus 311 ~~l~~~L~~~~~~-----------------------~~ii~Vfg~~gdkd~~~~l~~L--~~~~d~viv~~~~~~r~~~~ 365 (416)
T PRK10846 311 EYLTGRLKALPKN-----------------------GRVLAVIGMLHDKDIAGTLACL--KSVVDDWYCAPLEGPRGATA 365 (416)
T ss_pred HHHHHHHHHhcCC-----------------------CCEEEEEEeeCCCCHHHHHHHH--hhhCCEEEEECCCCCCCCCH
Confidence 9999988764211 2789999999999999999988 3346777666532 222110
Q ss_pred CCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHH
Q psy15432 521 PDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATV 600 (1255)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (1255)
..|++.
T Consensus 366 --------------------------------------------------------------------------~~l~~~ 371 (416)
T PRK10846 366 --------------------------------------------------------------------------EQLAEH 371 (416)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 112222
Q ss_pred HhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceee
Q psy15432 601 ASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650 (1255)
Q Consensus 601 ~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l 650 (1255)
.. +..+++++++|++.+.... .+++.||||||+|++|.++..+
T Consensus 372 ~~------~~~~~~~~~~Ai~~a~~~a-~~gD~VLi~GS~~~~~~~~~~~ 414 (416)
T PRK10846 372 LG------NGKSFDSVAQAWDAAMADA-KPEDTVLVCGSFHTVAHVMEVI 414 (416)
T ss_pred hh------hCcccCCHHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHhh
Confidence 21 1246789999999998776 4567899999999999986543
No 12
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=1.9e-63 Score=586.60 Aligned_cols=373 Identities=31% Similarity=0.495 Sum_probs=302.5
Q ss_pred hHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhH
Q psy15432 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 779 (1255)
Q Consensus 700 v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~ 779 (1255)
|++|+++|++||+|+ +++++|||||||||||||+|+++||+++|+|||+||||||.++||||+|||++|+++.|..+
T Consensus 1 l~r~~~~l~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~ 77 (397)
T TIGR01499 1 LERMKKLLEALGNPQ---DLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQA 77 (397)
T ss_pred ChHHHHHHHHcCCcH---hhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHH
Confidence 579999999999998 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCH
Q psy15432 780 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTI 859 (1255)
Q Consensus 780 ~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tl 859 (1255)
+.++++..+... ..|+|||++|+|||++|.+++||++|||||+|||+|+||++ +|+++|||||++||+++||+|+
T Consensus 78 ~~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~ 152 (397)
T TIGR01499 78 FEQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTL 152 (397)
T ss_pred HHHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccH
Confidence 999998876531 36999999999999999999999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--------ceeccC-----CccccCCCchhH
Q psy15432 860 EEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------NYRWRG-----QPLDEDWKSTVQ 926 (1255)
Q Consensus 860 eeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--------~~~~~~-----~~v~l~L~G~hq 926 (1255)
|+||++|++|||++.++|++. +++.+.+++.+.+.+.+++++.++... .+.+.+ ..+.++++|.||
T Consensus 153 e~ia~~Ka~I~k~~~~~v~~~-d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~ 231 (397)
T TIGR01499 153 EEIAWEKAGIIKEGVPIVTGP-QEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQ 231 (397)
T ss_pred HHHHHHHhCccCCCCCEEEcC-CChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHH
Confidence 999999999999999999988 677788888887777677766554211 122221 235678999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccccc
Q psy15432 927 SINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSS 1006 (1255)
Q Consensus 927 ~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1006 (1255)
++|+++|++++..+...
T Consensus 232 ~~N~~~Aiaa~~~lg~~--------------------------------------------------------------- 248 (397)
T TIGR01499 232 AENAALALAALEVLGKQ--------------------------------------------------------------- 248 (397)
T ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 99999999988863110
Q ss_pred ccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEE
Q psy15432 1007 LLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVF 1085 (1255)
Q Consensus 1007 ~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVf 1085 (1255)
...++ +.+.+||+++.||||||++..++..+|+||||||+|+++++++++... +.+++++||
T Consensus 249 -----~~~i~~~~i~~~L~~~~~pGR~e~i~~~~~~viiD~AHNp~a~~~~l~~l~~~~------------~~~~i~~V~ 311 (397)
T TIGR01499 249 -----RPKLSEEAIRKGLANTIWPGRLEILSEDNPNILLDGAHNPHSAEALAEWFKKRF------------NGRPIILLF 311 (397)
T ss_pred -----cCCCCHHHHHHHHHhCCCCceEEEEecCCCEEEEECCCCHHHHHHHHHHHHHhc------------CCCCeEEEE
Confidence 01245 679999999999999999986567899999999999999999998632 113678999
Q ss_pred ecCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCC
Q psy15432 1086 NVTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQS 1165 (1255)
Q Consensus 1086 g~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1165 (1255)
|+++|||+.++++.|+.....|.+++++++++...... +.............+..+.+..+. ...+++.+|+=||-
T Consensus 312 G~~~dkd~~~~~~~l~~~~~~d~~~~~~~~~r~~~~~~---i~~~~~~~~~~~~~~~~~ai~~a~-~~~~~d~vlv~GSl 387 (397)
T TIGR01499 312 GALADKDAAAMLAPLKPVVDKEVFVTPFDYPRADDAAD---LAALAETFGKETVEDWREALALAL-NASAEDDILVTGSL 387 (397)
T ss_pred EeeCCCCHHHHHHHHhhccCcEEEEECCCCCCCCCHHH---HHHHHHHcCceecCCHHHHHHHHH-hCCCCCEEEEEccH
Confidence 99999999999999842111246677777776554321 000110001223457777777766 44556788888873
No 13
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=4.5e-59 Score=552.68 Aligned_cols=378 Identities=24% Similarity=0.320 Sum_probs=298.0
Q ss_pred cHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHH
Q psy15432 665 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRS 744 (1255)
Q Consensus 665 ~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~ 744 (1255)
+|++++++|.++... +. .++|++|+++|+.||+|+ .++++|||||||||||||+|+++||++
T Consensus 12 ~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~ll~~lg~p~---~~~~~I~VtGTNGKgSt~~~l~~iL~~ 73 (416)
T PRK10846 12 PLASWLSYLENLHSK----------TI-----DLGLERVSQVAARLDLLK---PAPFVFTVAGTNGKGTTCRTLESILMA 73 (416)
T ss_pred HHHHHHHHHHhcccc----------CC-----CCChHHHHHHHHHhCCCc---cCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 577888887776432 22 279999999999999998 567899999999999999999999999
Q ss_pred CCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec
Q psy15432 745 HGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV 824 (1255)
Q Consensus 745 ~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV 824 (1255)
+|+|||+||||||.+++|||+|||++|+++.|++++.++..... ...|+|||++|++||.+|.+++||++||||
T Consensus 74 ~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~------~~~~t~fe~~t~~a~~~f~~~~vd~~VlEv 147 (416)
T PRK10846 74 AGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARG------DISLTYFEYGTLSALWLFKQAQLDVVILEV 147 (416)
T ss_pred cCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999888765542 235899999999999999999999999999
Q ss_pred ccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEc
Q psy15432 825 GIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 904 (1255)
Q Consensus 825 G~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~ 904 (1255)
|+||++|+||++ +|+++|||||++||+++||+|+|+||++|++|||++.++|++. ++ ...++.+.|.+.+++++.+
T Consensus 148 glggrld~tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~--~d-~~~~~~~~a~~~~~~~~~~ 223 (416)
T PRK10846 148 GLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGE--PD-MPSTIADVAQEKGALLQRR 223 (416)
T ss_pred cCCCCchhhhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECC--cc-HhHHHHHHHHHhCCcEEEe
Confidence 999999999999 6999999999999999999999999999999999999998875 22 2345556676667776543
Q ss_pred CCccc-------eeccC--C-ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCC
Q psy15432 905 PSILN-------YRWRG--Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQG 974 (1255)
Q Consensus 905 ~~~~~-------~~~~~--~-~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1255)
+.... +.+.. . ...++++ .||..|+++|++++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~---------------------------------- 268 (416)
T PRK10846 224 GVDWNYSVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS---------------------------------- 268 (416)
T ss_pred cceeeeeccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc----------------------------------
Confidence 22111 11110 0 1134555 47999999999987651
Q ss_pred CCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCHHHH
Q psy15432 975 HLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 1053 (1255)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP~S~ 1053 (1255)
.++++ +.+.+||+++.||||||++...+ .+|+||||||+|+
T Consensus 269 -------------------------------------~~~i~~~~i~~~L~~~~~~gR~e~~~~~~-~iI~D~AHNp~a~ 310 (416)
T PRK10846 269 -------------------------------------GLEVSEQAIRDGIASAILPGRFQIVSESP-RVILDVAHNPHAA 310 (416)
T ss_pred -------------------------------------CCCCCHHHHHHHHHhCCCCceEEEEcCCC-cEEEECCCCHHHH
Confidence 04566 67999999999999999998654 5999999999999
Q ss_pred HHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcC-CCCcccccccCCCCCcccc
Q psy15432 1054 ELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP-NILTNEIRWRGQPLDEDWK 1132 (1255)
Q Consensus 1054 ~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~-~~~~~~~~~~~~~~~~~~~ 1132 (1255)
+++++.++... ..+++++|||+++|||...++..| .+ .+|.+++++ +.+...... .+.
T Consensus 311 ~~l~~~L~~~~------------~~~~ii~Vfg~~gdkd~~~~l~~L-~~-~~d~viv~~~~~~r~~~~~-------~l~ 369 (416)
T PRK10846 311 EYLTGRLKALP------------KNGRVLAVIGMLHDKDIAGTLACL-KS-VVDDWYCAPLEGPRGATAE-------QLA 369 (416)
T ss_pred HHHHHHHHHhc------------CCCCEEEEEEeeCCCCHHHHHHHH-hh-hCCEEEEECCCCCCCCCHH-------HHH
Confidence 99999887642 124689999999999999999888 33 356665554 333322211 111
Q ss_pred cc--cccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1133 ST--VQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1133 ~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
.. ......+.++.+..+.....+++++|+=||
T Consensus 370 ~~~~~~~~~~~~~~Ai~~a~~~a~~gD~VLi~GS 403 (416)
T PRK10846 370 EHLGNGKSFDSVAQAWDAAMADAKPEDTVLVCGS 403 (416)
T ss_pred HHhhhCcccCCHHHHHHHHHHhcCCCCEEEEECc
Confidence 11 122345788888888777777888888555
No 14
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1.7e-45 Score=442.00 Aligned_cols=353 Identities=20% Similarity=0.182 Sum_probs=268.7
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|.+.+++.|+.+...++.....-+--. ... .+.+ .+.|+
T Consensus 13 ~~i~~i~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~v~~~~~--~~~------------~~~~----~i~V~ 74 (460)
T PRK00139 13 VEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEADG--EAG------------TGVP----VIIVP 74 (460)
T ss_pred CceeEEEeeccCcCCCCEEEEeCCCcCcHHHHHHHHHHCCCEEEEEcCcc--ccC------------CCce----EEEEC
Confidence 45788899999999999999999999999888666555433211111000 000 0111 26789
Q ss_pred HHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 90 QVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
+++++|+.|+..+++.+ ++++||||||||||||++|+++||+++|+++++++||+ ..|++.+++. .
T Consensus 75 d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~-------~~i~~~~~~~-~---- 142 (460)
T PRK00139 75 DLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG-------NGIGGELIPS-G---- 142 (460)
T ss_pred CHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------cccCCeeccc-C----
Confidence 99999999999888877 88999999999999999999999999999999999999 5578777652 1
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhhhc
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVL 243 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld~l 243 (1255)
.++.|.+.+..+|.+|.+.++|++|||+|++ +++|.+ +|+++|||||+.||+++|
T Consensus 143 -----------------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p~iaViTnI~~dHl~~~ 201 (460)
T PRK00139 143 -----------------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KFDVAVFTNLSRDHLDYH 201 (460)
T ss_pred -----------------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cCCEEEEcCCCcccCCcC
Confidence 1344566666778888999999999999975 466664 469999999999999999
Q ss_pred CCCHHHHHHHHHcccCCCc-eeeeccCCCchHHHHHHHhhhccCceEEEcC-Ccce--------------eeecCccccc
Q psy15432 244 GNTIEEITMQKAGIMKPNC-IAVTSANQRGPCKQILLETSRALNCVLLEAP-SILN--------------YRWRGQPLDE 307 (1255)
Q Consensus 244 G~Tle~Ia~~KagI~k~g~-~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~-~~~~--------------~~~~~~~i~l 307 (1255)
| |+|+|+.+|++|++... .+|++. +++....+.. . +..+.++ ...+ +.+.. .+.+
T Consensus 202 g-t~e~i~~~K~~i~~~~~~~~v~n~-dd~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 272 (460)
T PRK00139 202 G-TMEDYLAAKARLFSELGLAAVINA-DDEVGRRLLA-L-----PDAYAVSMAGADLRATDVEYTDSGQTFTLVT-EVES 272 (460)
T ss_pred C-CHHHHHHHHHHHHhcCCCeEEEEc-CcHhHHHHHh-h-----cEEEEecCCCCcEEEEEEEEecCceEEEEEE-EEEe
Confidence 9 99999999999998755 567776 5554433332 1 1222221 1111 11110 3668
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCC
Q psy15432 308 DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387 (1255)
Q Consensus 308 ~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1255)
+++|.||++|+++|++++..+
T Consensus 273 ~l~G~hn~~NalaAia~a~~l----------------------------------------------------------- 293 (460)
T PRK00139 273 PLIGRFNVSNLLAALAALLAL----------------------------------------------------------- 293 (460)
T ss_pred cccchhHHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999999999999988765
Q ss_pred ccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCC
Q psy15432 388 LTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSC 465 (1255)
Q Consensus 388 ~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~ 465 (1255)
+++ ++++.+||++++ ||||||++.. +++.||+||||||+|+++++++++....
T Consensus 294 ------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l~~~~~------------ 348 (460)
T PRK00139 294 ------------GVP-LEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHAK------------ 348 (460)
T ss_pred ------------CCC-HHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhcC------------
Confidence 667 899999999999 9999999985 5788999999999999999999976421
Q ss_pred CCCCCccCCCCCccEEEEEecCCCCChhh--hhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 466 PLDPTQSKSSNVIQRILVFNVTGERDPTK--LLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 466 ~~~~~~~~~~~~~~~ilVfg~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
+++++|||++++|+... ++..+ ....+|.+++|.+.++.+.
T Consensus 349 ------------~r~i~VlG~g~~k~~~~~~~~~~~-~~~~~d~vi~~~~~~~~~~ 391 (460)
T PRK00139 349 ------------GRLICVFGCGGDRDKGKRPLMGAI-AERLADVVIVTSDNPRSED 391 (460)
T ss_pred ------------CcEEEEECCCCCCchhhhHHHHHH-HHHcCCEEEEECCCCCCCC
Confidence 17899999988887553 33444 3456899999977666544
No 15
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=2.1e-43 Score=426.12 Aligned_cols=355 Identities=17% Similarity=0.154 Sum_probs=253.3
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|.+ ++.|+.+...++...-..+- ....+.+ .+.|+
T Consensus 32 ~~i~~i~~DSR~v~~g~lFva~~~~~--gh~fi~~A~~~GA~~~v~~~----------------~~~~~~~----~i~V~ 89 (481)
T PRK14022 32 VQFDDISYDSRTADEGTLFFAKGAYF--KHKFLQNAITQGLKLYVSEK----------------DYEVGIP----QVIVP 89 (481)
T ss_pred ccEEEEEecCcCCCCCCEEEEcCCCc--hHHHHHHHHHCCCeEEEEec----------------ccCCCCc----EEEEC
Confidence 47888999999999999999996655 66765554444322111110 0000112 26789
Q ss_pred HHHHHHHHhcCCccCC--CCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 90 QVVQYLGHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~--~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
+++++|+.|+..+++. .++++||||||||||||++|+++||++.|+++++.++.. ..+++...+ ..++.+
T Consensus 90 d~~~al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~ig~~~~~-~~~~~p 161 (481)
T PRK14022 90 DIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNT-------TLDGETFFK-SALTTP 161 (481)
T ss_pred CHHHHHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeee-------eccCCeeee-CCCCCc
Confidence 9999999999888776 478999999999999999999999999998776665433 223332221 222222
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhhhc
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVL 243 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld~l 243 (1255)
..+++|+++..+ .+.++|++|||+|++ +|+|.+ +|+++|||||+.||+++|
T Consensus 162 ----------------~~~~l~~~~~~~-----~e~g~~~~v~EvsS~~~~~~r~~~~----~pdiaViTNI~~DHld~L 216 (481)
T PRK14022 162 ----------------ESLDLFKMMAEA-----VDNGMTHLIMEVSSQAYLVGRVYGL----TFDVGVFLNITPDHIGPI 216 (481)
T ss_pred ----------------hHHHHHHHHHHH-----HHCCCCEEEEEechhHHHhccccCc----cccEEEEcCCCcccCCCC
Confidence 235677777654 788999999999976 455553 589999999999999994
Q ss_pred -CCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc------eeeecC-----cccccCCCc
Q psy15432 244 -GNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL------NYRWRG-----QPLDEDWKS 311 (1255)
Q Consensus 244 -G~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~------~~~~~~-----~~i~l~l~G 311 (1255)
+.|+|+|+.+|++||+++.++|++. ++++....+ ..+....+..+...... .+.+.. ..+.++++|
T Consensus 217 ~~~t~e~~a~aK~~i~~~~~~~Vln~-d~d~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G 294 (481)
T PRK14022 217 EHPTFEDYFYHKRLLMENSKAVVVNS-DMDHFSELL-EQVTPQEHDFYGIDSENQIMASNAFSFEATGKLAGTYDIQLIG 294 (481)
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEc-CCCHHHHHH-HHhcCCCEEEEecCCccceEEEEEEEEEEcccCCceEEEEEec
Confidence 2499999999999999988888876 434443332 22222222233322111 122211 135678999
Q ss_pred hhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCcccc
Q psy15432 312 TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGN 391 (1255)
Q Consensus 312 ~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1255)
.||++|+++|++++..+
T Consensus 295 ~hnv~NalaAia~a~~l--------------------------------------------------------------- 311 (481)
T PRK14022 295 KFNQENAMAAGLACLRL--------------------------------------------------------------- 311 (481)
T ss_pred hhhHHHHHHHHHHHHHc---------------------------------------------------------------
Confidence 99999999999988764
Q ss_pred ccccCCCCCCCChHHHHHHHhcCCCCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCC
Q psy15432 392 QSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPT 470 (1255)
Q Consensus 392 ~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 470 (1255)
|++ ++++.+||++..||||||++.. +++.+|+||||||+|+++++++++....
T Consensus 312 --------gi~-~~~i~~~L~~~~~~gR~e~i~~~~g~~vi~DyahNP~s~~aal~~l~~~~~----------------- 365 (481)
T PRK14022 312 --------GAS-LEDIQKGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQK----------------- 365 (481)
T ss_pred --------CCC-HHHHHHHhccCCCCCCeEEEECCCCCEEEEECCCCHHHHHHHHHHHhhhCC-----------------
Confidence 567 8999999999449999999985 5778999999999999999999976321
Q ss_pred ccCCCCCccEEEEEecCCCCChhh---hhHHhhccCCCc-EEEEcCCCCCCCC
Q psy15432 471 QSKSSNVIQRILVFNVTGERDPTK---LLSPLLQSNQFE-YILVTPNILTNES 519 (1255)
Q Consensus 471 ~~~~~~~~~~ilVfg~~~drD~~~---ll~~L~~~~~~d-~vi~t~~~~~~~~ 519 (1255)
+|+++|||++++|+..+ |.+.+ . ...+ .||+|+++++.+.
T Consensus 366 -------~r~i~V~G~~~e~g~~~~~~~~~~~-~-~~~~~~vi~~~~~~r~e~ 409 (481)
T PRK14022 366 -------GKLILLLGAAGNKGESRRPDFGRVA-N-RHPYLQVILTADDPNNED 409 (481)
T ss_pred -------CCEEEEECCCCCCCcchhHHHHHHH-H-hcCCceEEEccCCCCCCC
Confidence 27899999999998776 55555 2 2334 3778887777655
No 16
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1.7e-42 Score=416.21 Aligned_cols=394 Identities=19% Similarity=0.162 Sum_probs=281.9
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCC-cccccccchHHHHHHHHHh
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKD-PVEMQAVQVDQVVQYLGHL 710 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~-~~~~~~~~v~~~~~~L~~L 710 (1255)
..=+.+.|+.+..|.|++..++..+..+ +++.+.-.+++..--+.+... ..+.+...|++++++|++|
T Consensus 15 i~~i~~DSR~v~~g~lFval~G~~~dGh-----------~fi~~A~~~GA~~~v~~~~~~~~~~~~~i~V~d~~~al~~l 83 (460)
T PRK00139 15 ITGLTYDSRKVKPGDLFVALPGHKVDGR-----------DFIAQAIANGAAAVVAEADGEAGTGVPVIIVPDLRKALALL 83 (460)
T ss_pred eeEEEeeccCcCCCCEEEEeCCCcCcHH-----------HHHHHHHHCCCEEEEEcCccccCCCceEEEECCHHHHHHHH
Confidence 3347889999999999999887653333 333332222211000000000 0012347899999999999
Q ss_pred cCcccccc--cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHH
Q psy15432 711 NITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALH 788 (1255)
Q Consensus 711 g~~~~~~~--~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~ 788 (1255)
+..+++.. ++++||||||||||||++|+++||+++|+++++++||+ +.|++.+++..
T Consensus 84 a~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~-------~~i~~~~~~~~-------------- 142 (460)
T PRK00139 84 AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG-------NGIGGELIPSG-------------- 142 (460)
T ss_pred HHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------cccCCeecccC--------------
Confidence 87776554 78999999999999999999999999999999999998 34677665421
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC----CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHH
Q psy15432 789 AKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITM 864 (1255)
Q Consensus 789 ~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G----Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~ 864 (1255)
..++|.+.++.+|.+|.+.++|++|+|||++ +++|.+ +|+++|||||+.||+++|| |+|+|+.
T Consensus 143 --------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p~iaViTnI~~dHl~~~g-t~e~i~~ 209 (460)
T PRK00139 143 --------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KFDVAVFTNLSRDHLDYHG-TMEDYLA 209 (460)
T ss_pred --------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cCCEEEEcCCCcccCCcCC-CHHHHHH
Confidence 2567888888899999999999999999975 345553 5899999999999999999 9999999
Q ss_pred HHhccccCCc-eEEEccCCCChhHHHHHHHhhhcCCeEEEcC-Cccce-------eccCC------ccccCCCchhHHHH
Q psy15432 865 QKAGIMKPNC-IAVTSANQRGPCKQILLETSRALNCVLLEAP-SILNY-------RWRGQ------PLDEDWKSTVQSIN 929 (1255)
Q Consensus 865 ~KagI~K~g~-~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~-~~~~~-------~~~~~------~v~l~L~G~hq~~N 929 (1255)
+|++|++... .+|++. +++....+.. .+ ..+.++ ...++ ...+. .+.++++|.||+.|
T Consensus 210 ~K~~i~~~~~~~~v~n~-dd~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N 282 (460)
T PRK00139 210 AKARLFSELGLAAVINA-DDEVGRRLLA-LP-----DAYAVSMAGADLRATDVEYTDSGQTFTLVTEVESPLIGRFNVSN 282 (460)
T ss_pred HHHHHHhcCCCeEEEEc-CcHhHHHHHh-hc-----EEEEecCCCCcEEEEEEEEecCceEEEEEEEEEecccchhHHHH
Confidence 9999998654 778887 4444433332 11 111111 00001 00111 36688999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccC
Q psy15432 930 ISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLM 1009 (1255)
Q Consensus 930 a~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 1009 (1255)
+++|++++..
T Consensus 283 alaAia~a~~---------------------------------------------------------------------- 292 (460)
T PRK00139 283 LLAALAALLA---------------------------------------------------------------------- 292 (460)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999998875
Q ss_pred CCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe
Q psy15432 1010 GPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN 1086 (1255)
Q Consensus 1010 ~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg 1086 (1255)
+|++ +++.+||++++ ||||||++.. ++.++|+||||||+||++++++++... ++++++|||
T Consensus 293 ---lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iI~DyahNP~s~~aal~~l~~~~-------------~~r~i~VlG 356 (460)
T PRK00139 293 ---LGVPLEDALAALAKLQGVPGRMERVDAGQGPLVIVDYAHTPDALEKVLEALRPHA-------------KGRLICVFG 356 (460)
T ss_pred ---cCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhc-------------CCcEEEEEC
Confidence 4566 67999999999 9999999985 577899999999999999999997642 146899999
Q ss_pred cCCCCChhh--hhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1087 VTGERDPTK--LLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1087 ~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
++++|+... ++..+ ....+|.++++++.+....... +-+.+......+..+.++.+..+.....+++++|+-|.
T Consensus 357 ~g~~k~~~~~~~~~~~-~~~~~d~vi~~~~~~~~~~~~~---i~~~~~~~~~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~ 432 (460)
T PRK00139 357 CGGDRDKGKRPLMGAI-AERLADVVIVTSDNPRSEDPAA---IIADILAGIYDVIEDRAEAIRYAIAQAKPGDVVLIAGK 432 (460)
T ss_pred CCCCCchhhhHHHHHH-HHHcCCEEEEECCCCCCCCHHH---HHHHHHhCCCcccCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 988887652 33343 3455799999987665532110 00111111112446888899889888888899999887
Q ss_pred CCC
Q psy15432 1165 SSL 1167 (1255)
Q Consensus 1165 ~~~ 1167 (1255)
+.-
T Consensus 433 G~e 435 (460)
T PRK00139 433 GHE 435 (460)
T ss_pred cCc
Confidence 653
No 17
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-41 Score=406.33 Aligned_cols=404 Identities=19% Similarity=0.167 Sum_probs=308.6
Q ss_pred ccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHH
Q psy15432 13 KLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVV 92 (1255)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (1255)
++++.+||++.++.+|++..|.+-++..+.......+....--|.-. .+. ..+.+ -..+++++
T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~---~~~----------~~~~~----vi~V~~~~ 73 (475)
T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDI---KLA----------EAGVP----VIVVTGTN 73 (475)
T ss_pred ccceeehhhcCCCcEEEEEeccccccccchHhHhhCCCEEEEecccc---ccc----------ccCCC----EEEEcCcH
Confidence 67789999999999999999997777776555444332211111000 000 01111 15678888
Q ss_pred HHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEe-CCeecChhhhhhHHH
Q psy15432 93 QYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKL-NGEPISYDKFTKYFW 169 (1255)
Q Consensus 93 ~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~I-nG~~is~~~ft~~~~ 169 (1255)
..+..+...++.+| ++++|+||||||||||+.++.++++..|.+++++++-. ..+ .|... +..+++|
T Consensus 74 ~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~~~~~~-~~~~tTP-- 143 (475)
T COG0769 74 GKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELSPGILE-PTGLTTP-- 143 (475)
T ss_pred HHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eeccCCccc-ccCCCCc--
Confidence 88888888888875 58999999999999999999999999999999998764 333 24333 2345554
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhhhcCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVLGN 245 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld~lG~ 245 (1255)
+.+.++.++.-| .+.++++++||++++ +|.+.+.+ +++++|||+.||+|+||
T Consensus 144 --------------~~~~l~~~~~~~-----~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls~DHlD~h~- 199 (475)
T COG0769 144 --------------EALDLQNLLRDL-----LDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLSRDHLDYHG- 199 (475)
T ss_pred --------------cHHHHHHHHHHH-----HHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccCchhhcccC-
Confidence 566777777777 999999999999999 89999998 78899999999999999
Q ss_pred CHHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc----------e-----------eeec
Q psy15432 246 TIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL----------N-----------YRWR 301 (1255)
Q Consensus 246 Tle~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~----------~-----------~~~~ 301 (1255)
|+|+|+..|..+|+ ++..+|+++ +++.. ..++..........+.++... . +.+.
T Consensus 200 t~e~Y~~aK~~lf~~~~~~~~~Vin~-dd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~ 277 (475)
T COG0769 200 TMEYYGAAKAVLFESLPHSGEAVINP-DDGHG-LDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGG 277 (475)
T ss_pred cHHHHHHHHHHHHhhcCCCccEEEcc-CCchH-HHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCC
Confidence 99999999999985 566788888 54444 233333332221222222110 0 1122
Q ss_pred CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCC
Q psy15432 302 GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 381 (1255)
Q Consensus 302 ~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1255)
...+.++|+|.||++|+++|++++..+
T Consensus 278 ~~~~~~~L~G~fNv~NaLaA~a~~~~l----------------------------------------------------- 304 (475)
T COG0769 278 IGEYELPLPGLFNVYNALAAVAAALAL----------------------------------------------------- 304 (475)
T ss_pred ceeEeccccchhHHHHHHHHHHHHHHc-----------------------------------------------------
Confidence 246789999999999999999988764
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCc
Q psy15432 382 PGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSR 460 (1255)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~ 460 (1255)
|++ .+.|+++|++++ +|||||.+..+++.++|||||||+|++.+++.++....
T Consensus 305 ------------------G~~-~e~i~~~l~~~~~v~GRmE~v~~~~~~v~VDyAHnPd~le~~L~~~~~~~~------- 358 (475)
T COG0769 305 ------------------GVD-LEDILAGLETLKPVPGRMELVNIGGKLVIVDYAHNPDGLEKALRAVRLHAA------- 358 (475)
T ss_pred ------------------CCC-HHHHHHHHHhcCCCCCcceEecCCCCeEEEEeccChHHHHHHHHHHHhhcC-------
Confidence 677 999999999999 99999999988889999999999999999999984322
Q ss_pred cCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhh---ccCCCcEEEEcCCCCCCCCCCCCcCCCCccccccccc
Q psy15432 461 SVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL---QSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVK 537 (1255)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1255)
.++++||||.||||..+ +++| +...+|.+|+|+++||.|+|.
T Consensus 359 -----------------g~li~VfG~gGDrD~~k--r~~mg~ia~~~ad~vivt~dnpR~edp~---------------- 403 (475)
T COG0769 359 -----------------GRLIVVFGCGGDRDKSK--RPDMGAIAEQLADIVIVTSDNPRSEDPA---------------- 403 (475)
T ss_pred -----------------CcEEEEECccCCCCccc--ccchHHHHHhcCCcEEEcCCCCCCcCHH----------------
Confidence 27999999999999988 8887 577899999999999998851
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHH
Q psy15432 538 LDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVL 617 (1255)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~ 617 (1255)
.+++++..++....++.+..|++
T Consensus 404 ---------------------------------------------------------~i~~~i~~g~~~~~~~~~~~dr~ 426 (475)
T COG0769 404 ---------------------------------------------------------VILADILAGIEAPEKYEIIEDRE 426 (475)
T ss_pred ---------------------------------------------------------HHHHHHHhccCCccceecchhHH
Confidence 23445555554444577888999
Q ss_pred HHHHHHhccCCCCCceEEEecccc
Q psy15432 618 DTYNFKYGLDPSKEYHILVTGSLH 641 (1255)
Q Consensus 618 ~ai~~~~~~~~~~~~~vlvtGSlh 641 (1255)
+||+.+..++. +.+.|+++|+-|
T Consensus 427 ~AI~~ai~~a~-~~D~vliagkGh 449 (475)
T COG0769 427 EAIRKALDLAK-EGDVVLIAGKGH 449 (475)
T ss_pred HHHHHHHHhhc-cCCEEEEeeccc
Confidence 99999999984 677789998865
No 18
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=1.6e-41 Score=402.86 Aligned_cols=381 Identities=18% Similarity=0.149 Sum_probs=269.0
Q ss_pred ecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccC-CcccccccchHHHHHHHHHhcCccc
Q psy15432 637 TGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLD 715 (1255)
Q Consensus 637 tGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g-~~~~~~~~~v~~~~~~L~~Lg~~~~ 715 (1255)
+.|+.+..|.|++..++..++.+ +++.+...+++..--+.+.. ...+.+...|++++++|++|+..++
T Consensus 1 ~DSR~v~~g~lFval~G~~~dGh-----------~fi~~A~~~Ga~~~i~~~~~~~~~~~~~i~V~d~~~al~~la~~~~ 69 (417)
T TIGR01143 1 TDSRAIKPGDLFIALKGERFDGH-----------DFVEQALAAGAVAVLVDREVGPDNGLPQILVDDTLEALQALASAKR 69 (417)
T ss_pred CCCCccCCCcEEEEeCCCCCCHH-----------HHHHHHHHCCCEEEEEcccccCCCCCCEEEECCHHHHHHHHHHHHH
Confidence 46888888999999887654433 33332211111100000000 0001234789999999999998877
Q ss_pred ccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCC
Q psy15432 716 DIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAE 795 (1255)
Q Consensus 716 ~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~ 795 (1255)
+..+.++|+||||||||||++|+++||+..|+ .+.|+. ++|++| |.|.+
T Consensus 70 ~~~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i---g~p~~----------------------- 118 (417)
T TIGR01143 70 AKFSGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI---GLPLT----------------------- 118 (417)
T ss_pred hhCCCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc---chhHH-----------------------
Confidence 76678999999999999999999999999986 456775 666666 43322
Q ss_pred CCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccc---cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc-
Q psy15432 796 DMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK- 871 (1255)
Q Consensus 796 ~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D---~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K- 871 (1255)
+ .+.+.++|++|||+|+++..+ .++.+ +|+++|||||+.||+++|| |+|+|+.+|+.||+
T Consensus 119 ----------~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld~~g-s~e~~~~aK~~l~~~ 182 (417)
T TIGR01143 119 ----------L----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQG 182 (417)
T ss_pred ----------H----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhhhcC-CHHHHHHHHHHHHcc
Confidence 0 136789999999999775444 45666 7999999999999999999 99999999999996
Q ss_pred --CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC---------------c-cceec--cCC--ccccCCCchhHHHH
Q psy15432 872 --PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS---------------I-LNYRW--RGQ--PLDEDWKSTVQSIN 929 (1255)
Q Consensus 872 --~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~---------------~-~~~~~--~~~--~v~l~L~G~hq~~N 929 (1255)
+++.+|++. |++....+...+. +++++.++. . ..+.+ .+. .+.++++|.||++|
T Consensus 183 ~~~~~~~vln~--Dd~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N 258 (417)
T TIGR01143 183 LKENGIAVINA--DDPAFAKFAKRLP--NKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRHNVMN 258 (417)
T ss_pred cCCCCEEEEeC--CcHHHHHHHHhcc--CCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHHHHHH
Confidence 367888887 4455555544332 122222211 0 01111 111 46679999999999
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccC
Q psy15432 930 ISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLM 1009 (1255)
Q Consensus 930 a~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 1009 (1255)
+++|++++..
T Consensus 259 ~laAia~~~~---------------------------------------------------------------------- 268 (417)
T TIGR01143 259 ALAAAALALE---------------------------------------------------------------------- 268 (417)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 9999998875
Q ss_pred CCCCCCC-HHHHHHHhcCC-CCCcEEEEeecCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe
Q psy15432 1010 GPHFEID-PKTYRGIKACV-WPGRVQVIRKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN 1086 (1255)
Q Consensus 1010 ~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg 1086 (1255)
+|++ +++.++|++++ +|||||+...++.++|+| |||||+|+++++++++... +++++|||
T Consensus 269 ---lGi~~~~i~~~l~~~~~~~gR~e~~~~~~~~vidDsya~np~s~~~al~~l~~~~--------------~r~i~VlG 331 (417)
T TIGR01143 269 ---LGIPLEEIAEGLAELKLVKGRFEIQTKNGLTLIDDTYNANPDSMRAALDALARFP--------------GKKILVLG 331 (417)
T ss_pred ---cCCCHHHHHHHHHhCCCCCCceeEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhCC--------------CCEEEEEc
Confidence 4666 67999999999 999999544457888999 9999999999999997532 36899999
Q ss_pred cC---CCCChh---hhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEE
Q psy15432 1087 VT---GERDPT---KLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAEL 1160 (1255)
Q Consensus 1087 ~~---~drD~~---~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 1160 (1255)
++ ++++.. .|.+.+ ....+|.+|++++++....... .. ...+..+.++..+.+.....+++++|
T Consensus 332 ~~~e~G~~~~~~~~~l~~~~-~~~~~d~vi~~g~~~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~~~~~d~VL 401 (417)
T TIGR01143 332 DMAELGEYSEELHAEVGRYA-NSLGIDLVFLVGEEAAVIYDSL--------GC-KGFHFADKDELLAFLKLELGEGDVVL 401 (417)
T ss_pred CchhcChHHHHHHHHHHHHH-HHcCCCEEEEECHHHHHHHHhc--------cc-CcEEECCHHHHHHHHHHhcCCCCEEE
Confidence 98 555432 233333 3444799999988764322111 11 12334578888888888788889999
Q ss_pred eecCCCCCCccccccc
Q psy15432 1161 KRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1161 ~~~~~~~~~~~~~~~~ 1176 (1255)
+|||+++.|+++.+.+
T Consensus 402 lkGSr~~~le~~~~~~ 417 (417)
T TIGR01143 402 VKGSRSVKLEKVVEAL 417 (417)
T ss_pred EEeCCcCcHHHHHhhC
Confidence 9999999999887653
No 19
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=1.2e-40 Score=400.59 Aligned_cols=358 Identities=19% Similarity=0.234 Sum_probs=258.4
Q ss_pred ccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHH-HHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 11 ELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVD-AIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e-ai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+..+..+||++.|+.+||+.+|.+.+++.|+.+...+....-..+ .+. .. ..+.+ .+.|+
T Consensus 3 ~~~~v~~dsr~v~~g~lFval~G~~~dgh~fi~~A~~~GA~~~i~~~~~~---~~-----------~~~~~----~~~v~ 64 (464)
T TIGR01085 3 EVTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVERDVD---FY-----------VAPVP----VIIVP 64 (464)
T ss_pred ceeEEEecCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEccccc---cc-----------cCCce----EEEEC
Confidence 4677889999999999999999999999888766555432211110 000 00 00111 36789
Q ss_pred HHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeec-Chhhhhh
Q psy15432 90 QVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPI-SYDKFTK 166 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~i-s~~~ft~ 166 (1255)
+++++|++|+..+++.+ ++++||||||||||||++||+++|+++|+++|+++|++ ..+++..+ ..
T Consensus 65 d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g-------~~~~~n~~ig~----- 132 (464)
T TIGR01085 65 DLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIG-------YRLGGNDLIKN----- 132 (464)
T ss_pred CHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccc-------eeECCeeeecC-----
Confidence 99999999998877753 78999999999999999999999999999999999998 34443322 10
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHH-hhhhhhccCCCEEEEeeccC----CccccccccCCccEEEEcCCCcchhh
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVM-SFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTA 241 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~-A~~~F~~~~vD~aVlEvG~G----Gr~D~tnii~~P~v~vITnIg~DHld 241 (1255)
+...+.|+.+++. ++..|.+.++|++|+|+|++ ++++. + +|+++|||||+.||++
T Consensus 133 ----------------p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~---~-~p~iaviTnI~~dHl~ 192 (464)
T TIGR01085 133 ----------------PAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRG---V-RFDAAVFTNLSRDHLD 192 (464)
T ss_pred ----------------cccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccC---c-eeCEEEEccCCCCCCc
Confidence 0124455666643 24456688999999999975 34444 2 6899999999999999
Q ss_pred hcCCCHHHHHHHHHcccCC---CceeeeccCCCchHHHHHHHhhhccCceEEEcCC-----c--------------ceee
Q psy15432 242 VLGNTIEEITMQKAGIMKP---NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-----I--------------LNYR 299 (1255)
Q Consensus 242 ~lG~Tle~Ia~~KagI~k~---g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-----~--------------~~~~ 299 (1255)
++| |+++|+.+|++||+. +..+|++. +++ ....+...+... ..+..... . ..+.
T Consensus 193 ~~g-s~e~i~~~K~~i~~~~~~~g~~v~n~-dd~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T TIGR01085 193 FHG-TMENYFAAKASLFTELGLKRFAVINL-DDE-YGAQFVKRLPKD-ITVSAITQPADGRAQDIKITDSGYSFEGQQFT 268 (464)
T ss_pred ccC-CHHHHHHHHHHHhccccCCCeEEEEc-CCH-HHHHHHHhcCCC-eEEEEecCCCccccccEEEEEEEEecCceEEE
Confidence 999 999999999999974 33466665 444 333343332211 11111100 0 0111
Q ss_pred ec----CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCC
Q psy15432 300 WR----GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGH 375 (1255)
Q Consensus 300 ~~----~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1255)
+. ...+.++++|.||++|+++|++++..+
T Consensus 269 ~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----------------------------------------------- 301 (464)
T TIGR01085 269 FETPAGEGHLHTPLIGRFNVYNLLAALATLLHL----------------------------------------------- 301 (464)
T ss_pred EEeCCceEEEEecCccHhHHHHHHHHHHHHHHc-----------------------------------------------
Confidence 11 123678999999999999999988765
Q ss_pred ccccCCCCCCCCccccccccCCCCC-CCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhh
Q psy15432 376 LSFSETPGGQGHLTGNQSSLLMGPH-FEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKS 452 (1255)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~ 452 (1255)
+ ++ ++.|.++|++++ +|||||++.. +++.+|+||||||+||++++++++...
T Consensus 302 ------------------------g~i~-~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~Dy~~NP~s~~aal~~l~~~~ 356 (464)
T TIGR01085 302 ------------------------GGID-LEDIVAALEKFRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHK 356 (464)
T ss_pred ------------------------CCCC-HHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC
Confidence 4 67 899999999999 9999999975 467899999999999999999997531
Q ss_pred hcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCC--hhhhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 453 EAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERD--PTKLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD--~~~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
. .|+++|||++++|+ +.+++..+ +...+|.++++.++++.+.
T Consensus 357 ~------------------------~r~i~VlGlg~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~~~ 400 (464)
T TIGR01085 357 D------------------------GRLIVVFGCGGDRDRGKRPLMGAI-AEQLADLVILTSDNPRGED 400 (464)
T ss_pred C------------------------CcEEEEECCCCCCCcchhHHHHHH-HHhcCCEEEEeCCCcCCCC
Confidence 1 16899999877765 45666666 4456899999876655443
No 20
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=8.8e-40 Score=394.75 Aligned_cols=401 Identities=16% Similarity=0.113 Sum_probs=268.8
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhc
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLN 711 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg 711 (1255)
..=+.+.|+-+..|.|++....+ . ..+++...-.+++..--+. +....+.+...|++++.+|+.|+
T Consensus 34 i~~i~~DSR~v~~g~lFva~~~~-~------------gh~fi~~A~~~GA~~~v~~-~~~~~~~~~i~V~d~~~al~~la 99 (481)
T PRK14022 34 FDDISYDSRTADEGTLFFAKGAY-F------------KHKFLQNAITQGLKLYVSE-KDYEVGIPQVIVPDIKKAMSLIA 99 (481)
T ss_pred EEEEEecCcCCCCCCEEEEcCCC-c------------hHHHHHHHHHCCCeEEEEe-cccCCCCcEEEECCHHHHHHHHH
Confidence 44478899999999999998433 1 2233332221221100000 00000123478999999999998
Q ss_pred Cccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHH
Q psy15432 712 ITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHA 789 (1255)
Q Consensus 712 ~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~ 789 (1255)
...+.. .++++||||||||||||++|+++||+..|+++++.++.. ..+++..+. ..++.
T Consensus 100 ~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~ig~~~~~-~~~~~----------- 160 (481)
T PRK14022 100 MEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNT-------TLDGETFFK-SALTT----------- 160 (481)
T ss_pred HHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeee-------eccCCeeee-CCCCC-----------
Confidence 766654 678999999999999999999999999997666655432 112221111 11100
Q ss_pred HhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC----CccccccccCCCcEEEEcCCCchhhhhc-CCCHHHHHH
Q psy15432 790 KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLGYDHTAVL-GNTIEEITM 864 (1255)
Q Consensus 790 ~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G----Gr~D~TNvi~~P~VavITnIg~DHl~~L-G~TleeIA~ 864 (1255)
+..+++|+++.- +.+.++|++|||+|++ +|+|. + +|+++|||||+.||+++| ++|+|+|+.
T Consensus 161 -----p~~~~l~~~~~~-----~~e~g~~~~v~EvsS~~~~~~r~~~---~-~pdiaViTNI~~DHld~L~~~t~e~~a~ 226 (481)
T PRK14022 161 -----PESLDLFKMMAE-----AVDNGMTHLIMEVSSQAYLVGRVYG---L-TFDVGVFLNITPDHIGPIEHPTFEDYFY 226 (481)
T ss_pred -----chHHHHHHHHHH-----HHHCCCCEEEEEechhHHHhccccC---c-cccEEEEcCCCcccCCCCCCCCHHHHHH
Confidence 111345555543 3788999999999975 45544 3 589999999999999995 349999999
Q ss_pred HHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc--c------ceecc--C---CccccCCCchhHHHHHH
Q psy15432 865 QKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L------NYRWR--G---QPLDEDWKSTVQSINIS 931 (1255)
Q Consensus 865 ~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~--~------~~~~~--~---~~v~l~L~G~hq~~Na~ 931 (1255)
+|++||+++.++|++. +++.....+ ..+.. .+++.++.. . .+.+. + ..+.++++|.||++|++
T Consensus 227 aK~~i~~~~~~~Vln~-d~d~~~~~~-~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~Nal 302 (481)
T PRK14022 227 HKRLLMENSKAVVVNS-DMDHFSELL-EQVTP--QEHDFYGIDSENQIMASNAFSFEATGKLAGTYDIQLIGKFNQENAM 302 (481)
T ss_pred HHHHHhcCCCEEEEEc-CCCHHHHHH-HHhcC--CCEEEEecCCccceEEEEEEEEEEcccCCceEEEEEechhhHHHHH
Confidence 9999999999999987 434443332 22221 123333210 0 12121 1 23567899999999999
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCC
Q psy15432 932 LAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGP 1011 (1255)
Q Consensus 932 lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 1011 (1255)
+|++++..
T Consensus 303 aAia~a~~------------------------------------------------------------------------ 310 (481)
T PRK14022 303 AAGLACLR------------------------------------------------------------------------ 310 (481)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 99998875
Q ss_pred CCCCC-HHHHHHHhcCCCCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC
Q psy15432 1012 HFEID-PKTYRGIKACVWPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG 1089 (1255)
Q Consensus 1012 ~~~i~-~~i~~gL~~~~~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~ 1089 (1255)
+|++ +++.+||++..||||||++.. ++..+|+||||||+||++++++++... .+++++|||+|+
T Consensus 311 -lgi~~~~i~~~L~~~~~~gR~e~i~~~~g~~vi~DyahNP~s~~aal~~l~~~~-------------~~r~i~V~G~~~ 376 (481)
T PRK14022 311 -LGASLEDIQKGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDSLNKLIDVVEEHQ-------------KGKLILLLGAAG 376 (481)
T ss_pred -cCCCHHHHHHHhccCCCCCCeEEEECCCCCEEEEECCCCHHHHHHHHHHHhhhC-------------CCCEEEEECCCC
Confidence 4566 679999999339999999985 577899999999999999999997632 147899999999
Q ss_pred CCChhh---hhhhhhcCCCCc-EEEEcCCCCcccccccCCCCCccccc---ccccccCCHHHHHHHHHHHcC-CCceEEe
Q psy15432 1090 ERDPTK---LLSPLLQSNQFE-YILVTPNILTNEIRWRGQPLDEDWKS---TVQSINISLAIQLAYLWMFRM-NKSAELK 1161 (1255)
Q Consensus 1090 drD~~~---ll~~L~~~~~~d-~vi~t~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 1161 (1255)
||+..+ |.+.+ .. ..+ .+++++++++.+.+.. +...+.. ....+..+.++.++.+..... +++++|+
T Consensus 377 e~g~~~~~~~~~~~-~~-~~~~~vi~~~~~~r~e~~~~---i~~~i~~~~~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi 451 (481)
T PRK14022 377 NKGESRRPDFGRVA-NR-HPYLQVILTADDPNNEDPKM---ITQEIASHITHPVEIIDDRAEAIKHAMSITEGPGDAVII 451 (481)
T ss_pred CCCcchhHHHHHHH-Hh-cCCceEEEccCCCCCCCHHH---HHHHHHhcCCCCeEEECCHHHHHHHHHHhcCCCCCEEEE
Confidence 998776 44444 23 233 3777877765443211 1111111 012234688999999988877 8888888
Q ss_pred ecCCCCCCcccccc
Q psy15432 1162 RNQSSLPMGPHFEI 1175 (1255)
Q Consensus 1162 ~~~~~~~~~~~~~~ 1175 (1255)
+++++.++.+++.
T Consensus 452 -~G~G~~~~~~~~~ 464 (481)
T PRK14022 452 -AGKGADAYQIVPG 464 (481)
T ss_pred -EecCCcceEEECC
Confidence 9999988876644
No 21
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.6e-38 Score=405.32 Aligned_cols=294 Identities=19% Similarity=0.216 Sum_probs=221.5
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHH
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWT 170 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~ 170 (1255)
...++..|- |...-.++++||||||||||||++|+++||+++|+++|+++|+. +.||++.+.....+.+
T Consensus 463 ~~~Il~~lf-p~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G-------~~i~~~~i~~g~~t~p--- 531 (864)
T TIGR02068 463 ARAIVDMLF-PAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDG-------VYIGKYLVEKGDNTGP--- 531 (864)
T ss_pred HHHHHHHhc-ccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCc-------eEECCEEEecCCCCCh---
Confidence 344555542 22222478999999999999999999999999999999999976 7899988865443322
Q ss_pred HHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcC-CCHHH
Q psy15432 171 VYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEE 249 (1255)
Q Consensus 171 v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG-~Tle~ 249 (1255)
.+++.+|.+.++|++|+|+|+||++|.++.+.+|+++|||||+.||++++| +|+|+
T Consensus 532 -----------------------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ 588 (864)
T TIGR02068 532 -----------------------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIED 588 (864)
T ss_pred -----------------------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHH
Confidence 234456789999999999999999999999989999999999999999887 79999
Q ss_pred HHHHHHccc---CCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc------------eeee--------cC----
Q psy15432 250 ITMQKAGIM---KPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL------------NYRW--------RG---- 302 (1255)
Q Consensus 250 Ia~~KagI~---k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~------------~~~~--------~~---- 302 (1255)
|+.+|++|+ +++.++|++. +++.+.+.. +.+.. ....|..+... .+.+ .+
T Consensus 589 ia~~K~~i~~~i~~~g~~VlNa-Dd~~~~~~a-~~~~~-~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 665 (864)
T TIGR02068 589 LADVKRVVVEVVLPDGYAVLNA-DDPMVAAMA-EKCKG-KIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEV 665 (864)
T ss_pred HHHHHHHHHHhhcCCCEEEEEC-CCHHHHHHH-HhCCC-CEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCccc
Confidence 999999995 7888899987 555554432 22211 11222221100 0000 00
Q ss_pred -----cccccCCCc--hhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCC
Q psy15432 303 -----QPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGH 375 (1255)
Q Consensus 303 -----~~i~l~l~G--~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (1255)
..+.+.+.| .||++|+++|++++..+
T Consensus 666 ~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l----------------------------------------------- 698 (864)
T TIGR02068 666 AIARIAAIPLTMGGRVAFQIENALAAVAAAWAL----------------------------------------------- 698 (864)
T ss_pred cccceeeeccccCCcccchHHHHHHHHHHHHHc-----------------------------------------------
Confidence 013333444 89999999999988664
Q ss_pred ccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-----CCCceEEEEecCcEEEEccCCCHHHHHHHHHHHHh
Q psy15432 376 LSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-----WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLR 450 (1255)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-----~pGR~e~v~~~~~~vilDgAHnp~si~~~l~~l~~ 450 (1255)
+++ ++.|.+||++|. ||||||++..+++.+|+||||||+|++++++.+++
T Consensus 699 ------------------------gi~-~e~I~~gL~~F~~~~~~~pGR~e~~~~~g~~vI~DyAHNP~a~~all~~l~~ 753 (864)
T TIGR02068 699 ------------------------GVP-IELIRAGIRTFDADAAQAPGRFNLFNLGGAHVLVDYGHNPAAIEAVGAAIRN 753 (864)
T ss_pred ------------------------CCC-HHHHHHHHHhccccccCCCCceEEEEeCCcEEEEEcCCCHHHHHHHHHHHHh
Confidence 567 899999999985 99999999767789999999999999999999976
Q ss_pred hhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhh---hHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 451 KSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKL---LSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~l---l~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
... .++++|||+++||+...+ .+.+ ...+|.||++.+++.+..
T Consensus 754 ~~~------------------------~r~i~Vig~~gdr~~~~~~~lg~~l--~~~~d~vil~~~~~~rg~ 799 (864)
T TIGR02068 754 WPA------------------------RRRIGVIGGPGDRRDEDLVEQGELL--GGAFDQIILKEDDDVRGR 799 (864)
T ss_pred cCC------------------------CCEEEEECCCCCCChhHHHHHHHHH--HHhCCEEEEEeCCCcCCC
Confidence 421 168999999999955543 3555 456899999887654433
No 22
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=4.9e-39 Score=417.11 Aligned_cols=402 Identities=18% Similarity=0.167 Sum_probs=276.3
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHH---HHHhhccC--CcccccccchHHHHHH
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRT---IRESKLRK--DPVEMQAVQVDQVVQY 706 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~---l~~~~~~g--~~~~~~~~~v~~~~~~ 706 (1255)
..=+.+.|+.+..|.|++..+++.++.+ +++.....+++. .++.. .. ...+.+...|++++++
T Consensus 29 ~~~i~~DSR~v~~g~lFval~G~~~dGh-----------~fi~~A~~~GA~~~v~~~~~-~~~~~~~~~~~i~V~d~~~a 96 (958)
T PRK11929 29 TADLRLDSREVQPGDLFVACRGAASDGR-----------AFIDQALARGAAAVLVEAEG-EDQVAAADALVLPVADLRKA 96 (958)
T ss_pred cceeeeeccCCCCCCEEEEeCCCCCCHH-----------HHHHHHHHcCCEEEEEeccc-cccccCCCCeEEEECCHHHH
Confidence 3447889999999999999987754433 333322212211 01000 00 0001234779999999
Q ss_pred HHHhcCccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHH
Q psy15432 707 LGHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 784 (1255)
Q Consensus 707 L~~Lg~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~ 784 (1255)
|+.|+..+++. .++++||||||||||||++|+++||+++|+++|+++|.. ++| ++..+...
T Consensus 97 l~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-----~~i--~~~~i~~~---------- 159 (958)
T PRK11929 97 LGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-----ARL--DGRLIPGS---------- 159 (958)
T ss_pred HHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-----ccC--CCeeeecC----------
Confidence 99886533222 468999999999999999999999999999999998853 322 44433311
Q ss_pred HHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEeccc----CCccccccccCCCcEEEEcCCCchhhhhcCCCHH
Q psy15432 785 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIE 860 (1255)
Q Consensus 785 ~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~----GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tle 860 (1255)
...|.++++.++ |..|.+.++|++|||||+ +|++|.+| |+++|||||+.||+++|| |+|
T Consensus 160 ----------~t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~----p~iaviTnI~~dHl~~~g-t~e 222 (958)
T PRK11929 160 ----------LTTPDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGLR----IAVAGFTNLTRDHLDYHG-TMQ 222 (958)
T ss_pred ----------CCCCCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCcccccc----cCEEEEeCCCccccccCC-CHH
Confidence 123445555444 346778999999999985 36888754 699999999999999999 999
Q ss_pred HHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--------------ceecc----CCcccc
Q psy15432 861 EITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------------NYRWR----GQPLDE 919 (1255)
Q Consensus 861 eIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--------------~~~~~----~~~v~l 919 (1255)
+|+++|++||+ +++++|++. +++....++...+.......+...... .+.+. ...+.+
T Consensus 223 ~i~~~K~~i~~~~~~~~~~Vln~-dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (958)
T PRK11929 223 DYEEAKAALFSKLPGLGAAVINA-DDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQLVT 301 (958)
T ss_pred HHHHHHHHHhcCCccCCeEEEEC-CCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCCceEEEEe
Confidence 99999999997 788999988 555544444332211111111111000 01111 123678
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCC
Q psy15432 920 DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 999 (1255)
Q Consensus 920 ~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1255)
+++|.||++|+++|++++..
T Consensus 302 ~l~G~hnv~NalaAia~a~~------------------------------------------------------------ 321 (958)
T PRK11929 302 RLLGRFNVSNLLLVAAALKK------------------------------------------------------------ 321 (958)
T ss_pred cCccHhhHHHHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999999998875
Q ss_pred cccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEe----ecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcc
Q psy15432 1000 LTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIR----KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQS 1073 (1255)
Q Consensus 1000 ~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~----~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~ 1073 (1255)
+|++ +++.+||++++ ||||||++. .++..+|+||||||+||++++++++.... +
T Consensus 322 -------------lgi~~~~I~~~L~~~~~~~gR~e~i~~~~~~~~~~vi~DyahnP~s~~a~l~~l~~~~~---~---- 381 (958)
T PRK11929 322 -------------LGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVDYAHTPDALAKALTALRPVAQ---A---- 381 (958)
T ss_pred -------------cCCCHHHHHHHHhcCCCCCCCcEEeccccCCCCCEEEEECCCCHHHHHHHHHHHHHhcc---c----
Confidence 4566 67999999998 999999994 34678999999999999999999985321 0
Q ss_pred cCCCCCcEEEEEecCCCCC--hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc-----cccccCCHHHHH
Q psy15432 1074 KSSNVIQRILVFNVTGERD--PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST-----VQSINISLAIQL 1146 (1255)
Q Consensus 1074 ~~~~~~~~vlVfg~~~drD--~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~ 1146 (1255)
+.+++++|||++++|| .+.++..+ +...+|.+++++++++.+.+.. +-..+... ......+.++.+
T Consensus 382 ---~~~r~i~V~g~g~~r~~~~~~~~~~~-~~~~~d~vi~t~~~pr~e~p~~---i~~~i~~~~~~~~~~~~~~d~~~Ai 454 (958)
T PRK11929 382 ---RNGRLVCVFGCGGDRDKGKRPEMGRI-AAELADRVVVTSDNPRSEAPEA---IIDQILAGIPAGARVFVISDRAEAI 454 (958)
T ss_pred ---CCCcEEEEECCCCCCCcchhHHHHHH-HHHhCCEEEEcCCCCCCCCHHH---HHHHHHhhccCCCceEEECCHHHHH
Confidence 1146799999998877 44666666 4456899999988776544321 11111110 122345788999
Q ss_pred HHHHHHcCCCceEEeecCCCC
Q psy15432 1147 AYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1147 ~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
..+.....+++++|+=|++.-
T Consensus 455 ~~a~~~a~~gD~VLv~GsG~e 475 (958)
T PRK11929 455 RQAIWMAAPGDVILIAGKGHE 475 (958)
T ss_pred HHHHHhcCCCCEEEEeecCcc
Confidence 889888888889998887543
No 23
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=3.9e-39 Score=382.60 Aligned_cols=333 Identities=19% Similarity=0.187 Sum_probs=239.1
Q ss_pred cccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHH
Q psy15432 18 AHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGH 97 (1255)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 97 (1255)
+||++.|+.+||+++|.+.+++.|+.+...++..--.-+- .. .. ..+.+ .+.|++++++|+.
T Consensus 2 DSR~v~~g~lFval~G~~~dGh~fi~~A~~~Ga~~~i~~~-~~--~~-----------~~~~~----~i~V~d~~~al~~ 63 (417)
T TIGR01143 2 DSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDR-EV--GP-----------DNGLP----QILVDDTLEALQA 63 (417)
T ss_pred CCCccCCCcEEEEeCCCCCCHHHHHHHHHHCCCEEEEEcc-cc--cC-----------CCCCC----EEEECCHHHHHHH
Confidence 7999999999999999999999987766555432111110 00 00 00111 2678999999999
Q ss_pred hcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHh
Q psy15432 98 LNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHA 177 (1255)
Q Consensus 98 Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~ 177 (1255)
|+..+++.+++++|+||||||||||+.|+++||++.|+ .+.|+. ++++++ |.|.
T Consensus 64 la~~~~~~~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i---g~p~------------------ 117 (417)
T TIGR01143 64 LASAKRAKFSGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI---GLPL------------------ 117 (417)
T ss_pred HHHHHHhhCCCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc---chhH------------------
Confidence 99998888888999999999999999999999999987 455654 333332 1111
Q ss_pred hhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccc---cccccCCccEEEEcCCCcchhhhcCCCHHHHHHHH
Q psy15432 178 KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQK 254 (1255)
Q Consensus 178 ~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D---~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~K 254 (1255)
+ + .+.++++|++|||+|+.+..+ .++.+ +|+++|||||+.||+|+|| |+|+|+.+|
T Consensus 118 ---------~------~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld~~g-s~e~~~~aK 176 (417)
T TIGR01143 118 ---------T------L----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLEGFG-SLEGIAEAK 176 (417)
T ss_pred ---------H------H----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhhhcC-CHHHHHHHH
Confidence 1 0 136789999999998765544 35665 7999999999999999999 999999999
Q ss_pred HcccCC---CceeeeccCCCchHHHHHHHhhhccCceEEEcCC-------------c-ceeeec--C--cccccCCCchh
Q psy15432 255 AGIMKP---NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-------------I-LNYRWR--G--QPLDEDWKSTV 313 (1255)
Q Consensus 255 agI~k~---g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-------------~-~~~~~~--~--~~i~l~l~G~~ 313 (1255)
+.||+. +..+|++. |++....+.+.+.......|.... . ..+.+. . ..+.++++|.|
T Consensus 177 ~~l~~~~~~~~~~vln~--Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~G~h 254 (417)
T TIGR01143 177 GEILQGLKENGIAVINA--DDPAFAKFAKRLPNKAILSFGFEGGDFSAADISYSALGSTGFTLVAPGGEFEVSLPLLGRH 254 (417)
T ss_pred HHHHcccCCCCEEEEeC--CcHHHHHHHHhccCCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeCCceEEEEccCCcHH
Confidence 999964 56677776 444545554433211111221111 0 112111 1 14667999999
Q ss_pred HHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCcccccc
Q psy15432 314 QSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQS 393 (1255)
Q Consensus 314 q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (1255)
|++|+++|++++..+
T Consensus 255 n~~N~laAia~~~~l----------------------------------------------------------------- 269 (417)
T TIGR01143 255 NVMNALAAAALALEL----------------------------------------------------------------- 269 (417)
T ss_pred HHHHHHHHHHHHHHc-----------------------------------------------------------------
Confidence 999999999988765
Q ss_pred ccCCCCCCCChHHHHHHHhcCC-CCCceEEEEecCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCc
Q psy15432 394 SLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQ 471 (1255)
Q Consensus 394 ~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 471 (1255)
|++ ++++.++|++++ +|||||+...+++.||+| |||||+|+++++++++... +
T Consensus 270 ------Gi~-~~~i~~~l~~~~~~~gR~e~~~~~~~~vidDsya~np~s~~~al~~l~~~~--~---------------- 324 (417)
T TIGR01143 270 ------GIP-LEEIAEGLAELKLVKGRFEIQTKNGLTLIDDTYNANPDSMRAALDALARFP--G---------------- 324 (417)
T ss_pred ------CCC-HHHHHHHHHhCCCCCCceeEEcCCCcEEEEcCCCCCHHHHHHHHHHHHhCC--C----------------
Confidence 667 899999999999 999999544557889999 9999999999999997542 1
Q ss_pred cCCCCCccEEEEEecC---CCCChh---hhhHHhhccCCCcEEEEcCCCC
Q psy15432 472 SKSSNVIQRILVFNVT---GERDPT---KLLSPLLQSNQFEYILVTPNIL 515 (1255)
Q Consensus 472 ~~~~~~~~~ilVfg~~---~drD~~---~ll~~L~~~~~~d~vi~t~~~~ 515 (1255)
++++|||++ |+++.. .|.+.+ ....+|.||++.+++
T Consensus 325 -------r~i~VlG~~~e~G~~~~~~~~~l~~~~-~~~~~d~vi~~g~~~ 366 (417)
T TIGR01143 325 -------KKILVLGDMAELGEYSEELHAEVGRYA-NSLGIDLVFLVGEEA 366 (417)
T ss_pred -------CEEEEEcCchhcChHHHHHHHHHHHHH-HHcCCCEEEEECHHH
Confidence 689999998 665542 233333 333469999986444
No 24
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=8.8e-39 Score=385.79 Aligned_cols=402 Identities=16% Similarity=0.103 Sum_probs=274.7
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHH---HHHhhccCCcccccccchHHHHHHHH
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRT---IRESKLRKDPVEMQAVQVDQVVQYLG 708 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~---l~~~~~~g~~~~~~~~~v~~~~~~L~ 708 (1255)
..=+.++|+.+..|-|++...++.++.+.-+ ++|++. ++. +++-.....+.+.+...|++++++|+
T Consensus 28 i~~i~~DSR~v~~g~lFval~G~~~DGh~fi----~~A~~~-------GA~~~v~~~~~~~~~~~~~~~i~V~d~~~al~ 96 (479)
T PRK14093 28 VTGISIDSRTLAPGDAYFAIKGDVHDGHAFV----AAALKA-------GAALAVVERAQRDKFAADAPLLVVDDVLAALR 96 (479)
T ss_pred eeEEEeecCCCCCCCEEEEeccCcCChHHHH----HHHHHc-------CCcEEEEecccccccCCCCCEEEECCHHHHHH
Confidence 3447889999999999999987765544321 333332 111 11100000000123378999999999
Q ss_pred HhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHH
Q psy15432 709 HLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALH 788 (1255)
Q Consensus 709 ~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~ 788 (1255)
+|+...+...++++|+||||||||||++|++++|+..|.+++..+ ++|..| |.|.+ +.
T Consensus 97 ~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g-----~~n~~i---G~p~~--------------l~ 154 (479)
T PRK14093 97 DLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVA-----SFNNHW---GVPLS--------------LA 154 (479)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCc-----cCCCcc---chhHH--------------HH
Confidence 998887766778999999999999999999999999997655433 334444 44431 00
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHH
Q psy15432 789 AKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQK 866 (1255)
Q Consensus 789 ~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~K 866 (1255)
-...++|++|+|+|++ |+++...-.-+|+++|||||+.||+++|| |+|+|+.+|
T Consensus 155 -----------------------~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~g-t~e~~~~aK 210 (479)
T PRK14093 155 -----------------------RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFS-GIEAIADAK 210 (479)
T ss_pred -----------------------cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcC-CHHHHHHHH
Confidence 0346789999999986 55544333337999999999999999999 999999999
Q ss_pred hccc---cCCceEEEccCCCChhHHHHHHHhhhcCC-eEEEcCC--cc--------------ceec--c--CCccccCCC
Q psy15432 867 AGIM---KPNCIAVTSANQRGPCKQILLETSRALNC-VLLEAPS--IL--------------NYRW--R--GQPLDEDWK 922 (1255)
Q Consensus 867 agI~---K~g~~av~~~~qd~~~~~vl~~~A~~~~~-~l~~~~~--~~--------------~~~~--~--~~~v~l~L~ 922 (1255)
..|| ++++.+|++. ++ +....+.+.+...+. .++.++. .. .+.. . ...++++++
T Consensus 211 ~~l~~~~~~~g~~VlN~-Dd-~~~~~l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 288 (479)
T PRK14093 211 AEIFTGLEPGGAAVLNR-DN-PQFDRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHDVTYKLGMP 288 (479)
T ss_pred HHHHccCCCCCEEEEeC-Cc-HHHHHHHHHhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCceEEEEecCC
Confidence 9999 4677888887 44 444434333322111 2222221 00 0111 1 124778999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccc
Q psy15432 923 STVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTG 1002 (1255)
Q Consensus 923 G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1255)
|.||++|+++|++++..
T Consensus 289 G~hnv~NalaAia~a~~--------------------------------------------------------------- 305 (479)
T PRK14093 289 GRHIAMNSLAVLAAAEL--------------------------------------------------------------- 305 (479)
T ss_pred CHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999998775
Q ss_pred ccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee---cCcEEEEE--cCcCHHHHHHHHHHHHhhhccccCCCcccC
Q psy15432 1003 NQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK---NNFKYFLD--GAHTTDSIELCAKWFLRKSEAEANPTQSKS 1075 (1255)
Q Consensus 1003 n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~---~~~~vilD--gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~ 1075 (1255)
+|++ +++.++|++++ .|||+|.++. ++..+++| |||||+||+++++++++....
T Consensus 306 ----------lGi~~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~--------- 366 (479)
T PRK14093 306 ----------AGADLALAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVG--------- 366 (479)
T ss_pred ----------cCCCHHHHHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhcc---------
Confidence 5676 77999999999 9999998753 33345565 999999999999999875210
Q ss_pred CCCCcEEEEEecCCCC--Chhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCcccc-cccccccCCHHHHHHHH
Q psy15432 1076 SNVIQRILVFNVTGER--DPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWK-STVQSINISLAIQLAYL 1149 (1255)
Q Consensus 1076 ~~~~~~vlVfg~~~dr--D~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~ 1149 (1255)
.++++++|||.|.+. ...++++.+. ....+|.|++++......... .. +....+..+.++..+.+
T Consensus 367 -~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l 437 (479)
T PRK14093 367 -PQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPLMRNLWDA--------LSSGKRGGYAEDAAALESQV 437 (479)
T ss_pred -CCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEchhHHHHHHh--------hcccccceeeCCHHHHHHHH
Confidence 125789999987442 2333344443 345689999997532211110 11 10112445778878888
Q ss_pred HHHcCCCceEEeecCCCCCCcccccccccccccc
Q psy15432 1150 WMFRMNKSAELKRNQSSLPMGPHFEIDPKTYRGI 1183 (1255)
Q Consensus 1150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 1183 (1255)
...+.+.+++|+||||++.||.+++.+.+.+.|.
T Consensus 438 ~~~~~~gd~vL~kGSr~~~le~i~~~l~~~~~~~ 471 (479)
T PRK14093 438 VAAIRAGDVIMVKGSLGSRMKTIVTALEKRFPGN 471 (479)
T ss_pred HHhcCCCCEEEEEcCCcCCHHHHHHHHHhhCCCc
Confidence 8888899999999999999999999998777665
No 25
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=4e-38 Score=378.76 Aligned_cols=400 Identities=18% Similarity=0.180 Sum_probs=273.1
Q ss_pred EEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCC--cccccccchHHHHHHHHHhcC
Q psy15432 635 LVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKD--PVEMQAVQVDQVVQYLGHLNI 712 (1255)
Q Consensus 635 lvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~--~~~~~~~~v~~~~~~L~~Lg~ 712 (1255)
+.+.|+.+-.|.|++..++...+.+ +++.....+.+..--..+... ....+...|+++.++|++|+.
T Consensus 7 v~~dsr~v~~g~lFval~G~~~dgh-----------~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~v~d~~~al~~la~ 75 (464)
T TIGR01085 7 LTLDSREVKPGDLFVAIKGTHVDGH-----------DFIHDAIANGAVAVVVERDVDFYVAPVPVIIVPDLRHALSSLAA 75 (464)
T ss_pred EEecCcCCCCCCEEEEecCCcCCHH-----------HHHHHHHHCCCeEEEEccccccccCCceEEEECCHHHHHHHHHH
Confidence 5679999999999999886543332 333322111111000000000 001234889999999999987
Q ss_pred ccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeec-ChhhhhhHHHHHHHHHHH
Q psy15432 713 TLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPI-SYDKFTKYFWTVYNALHA 789 (1255)
Q Consensus 713 ~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pI-s~~~f~~~~~~v~~~l~~ 789 (1255)
.+++. .++++||||||||||||++||+++|+.+|+++++++|++. .+++..+ .
T Consensus 76 ~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~-------~~~~n~~ig----------------- 131 (464)
T TIGR01085 76 AFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGY-------RLGGNDLIK----------------- 131 (464)
T ss_pred HHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccce-------eECCeeeec-----------------
Confidence 77654 4789999999999999999999999999999999999983 2332211 0
Q ss_pred HhhcCCCCCcHHHHHHHHH-HHhhhcCCCCEEEEecccC-CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHh
Q psy15432 790 KRKHAEDMPAYFKFLTVMS-FYVFVKEKPDAVIMEVGIG-GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKA 867 (1255)
Q Consensus 790 ~~~~~~~~pt~Fe~lT~mA-f~~F~~~~vD~aVlEVG~G-Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~Ka 867 (1255)
.+...+.|+.+|+.+ +..|.+.++|++|+|+|.+ |++.....+ +|+++|||||+.||++++| |+|+|+.+|+
T Consensus 132 ----~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~-~p~iaviTnI~~dHl~~~g-s~e~i~~~K~ 205 (464)
T TIGR01085 132 ----NPAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGV-RFDAAVFTNLSRDHLDFHG-TMENYFAAKA 205 (464)
T ss_pred ----CcccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCc-eeCEEEEccCCCCCCcccC-CHHHHHHHHH
Confidence 011256777777644 4556688999999999964 333333333 6999999999999999999 9999999999
Q ss_pred ccccC---CceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC-----c--------------cceec----cCCccccCC
Q psy15432 868 GIMKP---NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-----I--------------LNYRW----RGQPLDEDW 921 (1255)
Q Consensus 868 gI~K~---g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~-----~--------------~~~~~----~~~~v~l~L 921 (1255)
+||+. ++.+|++. |++....+...+... ..+..... . ..+.+ +...+.+++
T Consensus 206 ~i~~~~~~~g~~v~n~--dd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 282 (464)
T TIGR01085 206 SLFTELGLKRFAVINL--DDEYGAQFVKRLPKD-ITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPL 282 (464)
T ss_pred HHhccccCCCeEEEEc--CCHHHHHHHHhcCCC-eEEEEecCCCccccccEEEEEEEEecCceEEEEEeCCceEEEEecC
Confidence 99973 45688887 444433343332210 11111000 0 01111 112367889
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcc
Q psy15432 922 KSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLT 1001 (1255)
Q Consensus 922 ~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1255)
+|.||++|+++|++++..
T Consensus 283 ~G~hn~~NalaAia~a~~-------------------------------------------------------------- 300 (464)
T TIGR01085 283 IGRFNVYNLLAALATLLH-------------------------------------------------------------- 300 (464)
T ss_pred ccHhHHHHHHHHHHHHHH--------------------------------------------------------------
Confidence 999999999999998876
Q ss_pred cccccccCCCCCC-CC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCC
Q psy15432 1002 GNQSSLLMGPHFE-ID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSN 1077 (1255)
Q Consensus 1002 ~n~~~~~~~~~~~-i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~ 1077 (1255)
++ ++ +.+.++|++++ +|||||++.. ++..+|+||||||+||++++++++...
T Consensus 301 -----------lg~i~~e~i~~~L~~~~~~~gR~e~~~~~~g~~vi~Dy~~NP~s~~aal~~l~~~~------------- 356 (464)
T TIGR01085 301 -----------LGGIDLEDIVAALEKFRGVPGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHK------------- 356 (464)
T ss_pred -----------cCCCCHHHHHHHHHhCCCCCCCcEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC-------------
Confidence 34 66 67999999999 9999999975 467899999999999999999997532
Q ss_pred CCcEEEEEecCCCCCh--hhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc----ccccccCCHHHHHHHHHH
Q psy15432 1078 VIQRILVFNVTGERDP--TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS----TVQSINISLAIQLAYLWM 1151 (1255)
Q Consensus 1078 ~~~~vlVfg~~~drD~--~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~ 1151 (1255)
.+++++|||+..+|+. ..++..+ ....+|.++++++.+..+..... ..+.+++ ....+..+.++.++.+..
T Consensus 357 ~~r~i~VlGlg~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 433 (464)
T TIGR01085 357 DGRLIVVFGCGGDRDRGKRPLMGAI-AEQLADLVILTSDNPRGEDPEQI--IADILAGISEKEKVVIIADRRQAIRYAIS 433 (464)
T ss_pred CCcEEEEECCCCCCCcchhHHHHHH-HHhcCCEEEEeCCCcCCCCHHHH--HHHHHhcccCCCcEEEECCHHHHHHHHHH
Confidence 1468999998777654 4666666 45567999998876543211100 0001111 011234689999999988
Q ss_pred HcCCCceEEeecCCCC
Q psy15432 1152 FRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1152 ~~~~~~~~l~~~~~~~ 1167 (1255)
...+++++|++|-++-
T Consensus 434 ~~~~~d~VLv~G~g~~ 449 (464)
T TIGR01085 434 NAKAGDVVLIAGKGHE 449 (464)
T ss_pred hcCCCCEEEEEEcCCc
Confidence 8889999999998764
No 26
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=3.9e-38 Score=377.81 Aligned_cols=388 Identities=15% Similarity=0.116 Sum_probs=270.9
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhc
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLN 711 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg 711 (1255)
..=+.++|+.+..|.|++..++..++.+.-+ ++|++ ..+..- +..+..+.+.+...|++++.+|..|+
T Consensus 24 i~~v~~DSR~v~~g~lFval~G~~~dGh~fi----~~A~~-------~Ga~~v-v~~~~~~~~~p~i~v~d~~~al~~la 91 (453)
T PRK10773 24 IDAVTTDTRKVTPGCLFVALKGERFDAHDFA----DDAKA-------AGAGAL-LVSRPLDIDLPQLVVKDTRLAFGQLA 91 (453)
T ss_pred eeEEEeeCCCCCCCcEEEEecCCCCCHHHHH----HHHHH-------CCCeEE-EEecCcCCCCCEEEECCHHHHHHHHH
Confidence 3447889999999999999987654433211 22222 111000 00011000123478889999999998
Q ss_pred CcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHh
Q psy15432 712 ITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKR 791 (1255)
Q Consensus 712 ~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~ 791 (1255)
...++....++|+||||||||||++|+++||+..|.. +.++. ++|..+ |.|.+...
T Consensus 92 ~~~~~~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~---~~t~g--n~n~~~---G~~~~~~~---------------- 147 (453)
T PRK10773 92 AWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNT---LYTAG--NLNNDI---GVPLTLLR---------------- 147 (453)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHHHHHhcCcc---cccCc--cccCCc---ccccHHhc----------------
Confidence 7776555678999999999999999999999999875 34443 444444 55533110
Q ss_pred hcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcc
Q psy15432 792 KHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGI 869 (1255)
Q Consensus 792 ~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI 869 (1255)
...++|++|+|+|+. |+++.+--+-+|+++|||||+.||+++|| |+|+|+.+|+.|
T Consensus 148 ---------------------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s~e~~~~aK~~l 205 (453)
T PRK10773 148 ---------------------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-SLAGVAKAKGEI 205 (453)
T ss_pred ---------------------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-CHHHHHHHHHHH
Confidence 345689999999986 78775444447999999999999999999 999999999999
Q ss_pred cc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC------------------ccceec----cCCccccCCCch
Q psy15432 870 MK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS------------------ILNYRW----RGQPLDEDWKST 924 (1255)
Q Consensus 870 ~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~------------------~~~~~~----~~~~v~l~L~G~ 924 (1255)
|+ +++.+|++. + ++....+.+.... ..++.++. ...+.+ ....+.++++|.
T Consensus 206 ~~~~~~~g~~vln~-D-d~~~~~~~~~~~~--~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~l~G~ 281 (453)
T PRK10773 206 FSGLPENGIAIMNA-D-SNDWLNWQSVIGS--KTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGR 281 (453)
T ss_pred HcccCCCCEEEEEC-C-cHhHHHHHHHhcC--CcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceEEEEecCCcH
Confidence 95 567888887 3 3333333332221 11222210 001111 112467899999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccc
Q psy15432 925 VQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQ 1004 (1255)
Q Consensus 925 hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 1004 (1255)
||++|+++|++++..
T Consensus 282 hnv~NalaAia~a~~----------------------------------------------------------------- 296 (453)
T PRK10773 282 HNIANALAAAALAMS----------------------------------------------------------------- 296 (453)
T ss_pred hHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 999999999998875
Q ss_pred ccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCc
Q psy15432 1005 SSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQ 1080 (1255)
Q Consensus 1005 ~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~ 1080 (1255)
+|++ +++.+||++++ +|||||++.. ++.++|.| |||||+||+++++.+++.. ++
T Consensus 297 --------lGi~~~~i~~~L~~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~--------------~r 354 (453)
T PRK10773 297 --------VGATLDAVKAGLANLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEMP--------------GY 354 (453)
T ss_pred --------cCCCHHHHHHHHHhCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhCC--------------CC
Confidence 4666 67999999999 9999999875 45555556 9999999999999998642 35
Q ss_pred EEEEEecCCC--CChhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC
Q psy15432 1081 RILVFNVTGE--RDPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN 1155 (1255)
Q Consensus 1081 ~vlVfg~~~d--rD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 1155 (1255)
+++|||.|.+ .....+++.+. ....+|.+++++.......... + ...++.+.++..+.+...+.+
T Consensus 355 ~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~~~---------~-~~~~~~~~~~~~~~l~~~~~~ 424 (453)
T PRK10773 355 RVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVGKLSHAISEAS---------G-VGEHFADKTALIARLKALLAE 424 (453)
T ss_pred EEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEChhHHHHHHhc---------C-CCeeECCHHHHHHHHHHhhcC
Confidence 7999998877 34555555554 3456899998875432211110 1 113457889988989888889
Q ss_pred Cc--eEEeecCCCCCCccccccccc
Q psy15432 1156 KS--AELKRNQSSLPMGPHFEIDPK 1178 (1255)
Q Consensus 1156 ~~--~~l~~~~~~~~~~~~~~~~~~ 1178 (1255)
.+ ++|+||||++.|+++.+.+.+
T Consensus 425 gd~~~vL~Kgsr~~~le~i~~~l~~ 449 (453)
T PRK10773 425 HQVITILVKGSRSAAMEEVVRALQE 449 (453)
T ss_pred CCceEEEEEeCCcCCHHHHHHHHHH
Confidence 88 699999999999999988754
No 27
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-37 Score=368.49 Aligned_cols=391 Identities=17% Similarity=0.160 Sum_probs=297.2
Q ss_pred CceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCc-cccc--ccchHHHHHHH
Q psy15432 631 EYHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDP-VEMQ--AVQVDQVVQYL 707 (1255)
Q Consensus 631 ~~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~-~~~~--~~~v~~~~~~L 707 (1255)
...-+.+.|+-+..|.+++...+..+..|.-. ++|++. .+...-+ .+... ...+ ...|.++.++|
T Consensus 23 ~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi----~~A~~~-------GA~a~~v-~r~~~~~~~~~~~~~V~d~~~al 90 (451)
T COG0770 23 VVSGVSIDSRKVKPGDLFVALKGERFDGHDFI----EQALAA-------GAAAVLV-ARPVLPPAIPLVVLLVLDTLEAL 90 (451)
T ss_pred ceeeEEeecccCCCCceeEEccCccccccchH----HHHHhc-------CCEEEEE-ecCcCCcccccceEEeHHHHHHH
Confidence 35678899999999999999998766655322 333321 1100001 11110 0011 25789999999
Q ss_pred HHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHH
Q psy15432 708 GHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNAL 787 (1255)
Q Consensus 708 ~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l 787 (1255)
++|+...++..+.++|+|||++|||||+.|+++||+..| -+|.||+ ++|+.| |.|++-..
T Consensus 91 ~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~---~v~~t~g--n~Nn~i---GlPltll~------------ 150 (451)
T COG0770 91 GKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKG---KVHATPG--NFNNEI---GLPLTLLR------------ 150 (451)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHhhcC---eEecCCC--ccCccc---cchhHHHh------------
Confidence 999998888888999999999999999999999999965 4788998 999999 98866322
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHH
Q psy15432 788 HAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQ 865 (1255)
Q Consensus 788 ~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~ 865 (1255)
+....|++|+|+|+. |+++.+.-+.+|++++||||+.+|++++| |.|.||++
T Consensus 151 -------------------------~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg-s~e~Ia~a 204 (451)
T COG0770 151 -------------------------LPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEA 204 (451)
T ss_pred -------------------------CCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC-CHHHHHHH
Confidence 455699999999999 99999888889999999999999999999 79999999
Q ss_pred Hhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc--c--------------ceec--cCC--ccccCCC
Q psy15432 866 KAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L--------------NYRW--RGQ--PLDEDWK 922 (1255)
Q Consensus 866 KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~--~--------------~~~~--~~~--~v~l~L~ 922 (1255)
|+.|+. +++.+|++. |++....+.... -..+++.++.. . .+.. .+. .+.++++
T Consensus 205 K~Ei~~~~~~~g~ai~n~--d~~~~~~~~~~~--~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~ 280 (451)
T COG0770 205 KAEILAGLRPEGIAILNA--DNPLLKNWAAKI--GNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLP 280 (451)
T ss_pred HHHHHhccCCCcEEEEEC--ccHHHHHHHhhc--CCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCceEEEEecCC
Confidence 999994 677788886 555533333321 13445555421 0 1111 111 4889999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccc
Q psy15432 923 STVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTG 1002 (1255)
Q Consensus 923 G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1255)
|+||+.|+++|++++..
T Consensus 281 G~hn~~NalaA~a~a~~--------------------------------------------------------------- 297 (451)
T COG0770 281 GRHNVTNALAAAALALE--------------------------------------------------------------- 297 (451)
T ss_pred cHhHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999999886
Q ss_pred ccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEE-eecCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCC
Q psy15432 1003 NQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVI-RKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNV 1078 (1255)
Q Consensus 1003 n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v-~~~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~ 1078 (1255)
+|++ ++|++||+.+. .+||+|++ ..++.++|.| |+.||+||.++++.+.....
T Consensus 298 ----------lG~~~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~------------- 354 (451)
T COG0770 298 ----------LGLDLEEIAAGLKELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALPG------------- 354 (451)
T ss_pred ----------cCCCHHHHHHHHHhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCcc-------------
Confidence 5677 78999999999 99999944 4456677777 89999999999999987642
Q ss_pred CcEEEEEecCCC--CChhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHc
Q psy15432 1079 IQRILVFNVTGE--RDPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFR 1153 (1255)
Q Consensus 1079 ~~~vlVfg~~~d--rD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 1153 (1255)
.+.++|+|.|.+ .+..++++.+. ....+|.+++.++..+...... .....++.+.++.++.++..+
T Consensus 355 ~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G~~~~~i~~~~---------~~~~~~f~~~~~l~~~l~~~l 425 (451)
T COG0770 355 RKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEAL---------GNKGIYFADKEELITSLKALL 425 (451)
T ss_pred CCcEEEeCChhhhCccHHHHHHHHHHHHHhcCceEEEEEccchHHHHHhc---------CCCeEecCCHHHHHHHHHHhc
Confidence 223899999887 44556666554 4556899999998655444332 111667788999999999999
Q ss_pred CCCceEEeecCCCCCCccccccccc
Q psy15432 1154 MNKSAELKRNQSSLPMGPHFEIDPK 1178 (1255)
Q Consensus 1154 ~~~~~~l~~~~~~~~~~~~~~~~~~ 1178 (1255)
...+++|+|||+++.|+++++++..
T Consensus 426 ~~gd~vLvKgSr~~~le~vv~~l~~ 450 (451)
T COG0770 426 RKGDVVLVKGSRGMKLEKVVDALLG 450 (451)
T ss_pred CCCCEEEEEcCccccHHHHHHHHhc
Confidence 9999999999999999999998764
No 28
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=2.9e-36 Score=384.69 Aligned_cols=318 Identities=18% Similarity=0.183 Sum_probs=233.8
Q ss_pred ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 718 ~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
.++|+||||||||||||++|+++||+.+|+++|+++|++ +.||+..+.....+.
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G-------~~i~~~~i~~g~~t~------------------- 530 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDG-------VYIGKYLVEKGDNTG------------------- 530 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCc-------eEECCEEEecCCCCC-------------------
Confidence 578999999999999999999999999999999999975 778888775433211
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC-CCHHHHHHHHhccc---cCC
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEITMQKAGIM---KPN 873 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG-~TleeIA~~KagI~---K~g 873 (1255)
| .+|+.+|.+.++|++|+|+|+||++|.++.+.+|+++|||||+.||++++| +|+|+||.+|++|+ +++
T Consensus 531 p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~ 603 (864)
T TIGR02068 531 P-------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPD 603 (864)
T ss_pred h-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 1 345566789999999999999999999999989999999999999999887 79999999999995 789
Q ss_pred ceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC--ccc------------eec--------cC---------CccccCCC
Q psy15432 874 CIAVTSANQRGPCKQILLETSRALNCVLLEAPS--ILN------------YRW--------RG---------QPLDEDWK 922 (1255)
Q Consensus 874 ~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~--~~~------------~~~--------~~---------~~v~l~L~ 922 (1255)
+++|++. +++...++ .+.+ .++++.++. ... +.. .+ ..+.+.+.
T Consensus 604 g~~VlNa-Dd~~~~~~-a~~~---~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~ 678 (864)
T TIGR02068 604 GYAVLNA-DDPMVAAM-AEKC---KGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMG 678 (864)
T ss_pred CEEEEEC-CCHHHHHH-HHhC---CCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccC
Confidence 9999998 55444332 2222 233333321 000 000 00 01333444
Q ss_pred c--hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCc
Q psy15432 923 S--TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHL 1000 (1255)
Q Consensus 923 G--~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1255)
| .||++|+++|++++..
T Consensus 679 G~g~~nv~NalaAiaaa~~------------------------------------------------------------- 697 (864)
T TIGR02068 679 GRVAFQIENALAAVAAAWA------------------------------------------------------------- 697 (864)
T ss_pred CcccchHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 5 8999999999998875
Q ss_pred ccccccccCCCCCCCC-HHHHHHHhcCC-----CCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCccc
Q psy15432 1001 TGNQSSLLMGPHFEID-PKTYRGIKACV-----WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSK 1074 (1255)
Q Consensus 1001 ~~n~~~~~~~~~~~i~-~~i~~gL~~~~-----~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~ 1074 (1255)
++++ +.|.+||++|. ||||||++..++..+|+||||||+|++++++.++...
T Consensus 698 ------------lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~~g~~vI~DyAHNP~a~~all~~l~~~~---------- 755 (864)
T TIGR02068 698 ------------LGVPIELIRAGIRTFDADAAQAPGRFNLFNLGGAHVLVDYGHNPAAIEAVGAAIRNWP---------- 755 (864)
T ss_pred ------------cCCCHHHHHHHHHhccccccCCCCceEEEEeCCcEEEEEcCCCHHHHHHHHHHHHhcC----------
Confidence 4566 67999999985 9999999976778899999999999999999997642
Q ss_pred CCCCCcEEEEEecCCCCChhhhh---hhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc--------cccccCCHH
Q psy15432 1075 SSNVIQRILVFNVTGERDPTKLL---SPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST--------VQSINISLA 1143 (1255)
Q Consensus 1075 ~~~~~~~vlVfg~~~drD~~~ll---~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~ 1143 (1255)
.+++++|||+++||+.+.+. +.+ ...+|.|+++.+......+. +. ..+.+... ......+.+
T Consensus 756 ---~~r~i~Vig~~gdr~~~~~~~lg~~l--~~~~d~vil~~~~~~rg~~~-ge-~~~~i~~~~~~~~~~~~v~~~~d~~ 828 (864)
T TIGR02068 756 ---ARRRIGVIGGPGDRRDEDLVEQGELL--GGAFDQIILKEDDDVRGRPR-GE-AAALLRQGLRQSARKAAIEDILDET 828 (864)
T ss_pred ---CCCEEEEECCCCCCChhHHHHHHHHH--HHhCCEEEEEeCCCcCCCCC-ch-HHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 14689999999999666544 445 34589999987654322211 11 01111111 112245777
Q ss_pred HHHHHHHHHcCCCceEEeec
Q psy15432 1144 IQLAYLWMFRMNKSAELKRN 1163 (1255)
Q Consensus 1144 ~~~~~~~~~~~~~~~~l~~~ 1163 (1255)
+.+..+.....+.+.+|+=+
T Consensus 829 eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 829 EAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred HHHHHHHHhCCCCCEEEEEe
Confidence 88888887777777777654
No 29
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=2.8e-36 Score=385.37 Aligned_cols=395 Identities=14% Similarity=0.160 Sum_probs=273.4
Q ss_pred ceEEEeccccc--ccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhc-cCC---cccccccchHHHHH
Q psy15432 632 YHILVTGSLHL--VGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKL-RKD---PVEMQAVQVDQVVQ 705 (1255)
Q Consensus 632 ~~vlvtGSlhL--VGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~-~g~---~~~~~~~~v~~~~~ 705 (1255)
..-+.+.|+.+ ..|.|++..+++.++.+ +++.+...+++..--+.+ ... ..+.+...|+|+++
T Consensus 24 i~~i~~DSR~v~~~~g~lFval~G~~~DGh-----------~fi~~A~~~GA~~iv~~~~~~~~~~~~~~~~i~V~d~~~ 92 (822)
T PRK11930 24 IDQILTDSRSLSFPENTLFFALKGERNDGH-----------RYIQELYEKGVRNFVVSEEKHPEESYPDANFLKVKDPLK 92 (822)
T ss_pred eCEEEecCCccCCCCCcEEEEeCCCCCCHH-----------HHHHHHHHCCCEEEEEeccccccccCCCCCEEEECCHHH
Confidence 44588899998 89999999988754433 233222222211000000 000 00123478999999
Q ss_pred HHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHH
Q psy15432 706 YLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN 785 (1255)
Q Consensus 706 ~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~ 785 (1255)
+|+.|+...+...++++|+||||||||||++|+++||+..|..+ .++. ++|..| |.|.+.
T Consensus 93 al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~---~~~~--~~n~~i---g~p~~~------------ 152 (822)
T PRK11930 93 ALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIV---RSPR--SYNSQI---GVPLSV------------ 152 (822)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEe---cCCc--ccCcch---hHHHHH------------
Confidence 99999887777677899999999999999999999999877543 3332 333333 443220
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHH
Q psy15432 786 ALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEIT 863 (1255)
Q Consensus 786 ~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA 863 (1255)
.....++|++|+|+|+. |.++...-+-+|+++|||||+.||+++|| |+|+|+
T Consensus 153 -------------------------~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g-t~e~y~ 206 (822)
T PRK11930 153 -------------------------WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR-SIKQKI 206 (822)
T ss_pred -------------------------hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-CHHHHH
Confidence 01356889999999977 66664444337999999999999999999 999999
Q ss_pred HHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC---c--------------ccee--ccC--CccccCCC
Q psy15432 864 MQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS---I--------------LNYR--WRG--QPLDEDWK 922 (1255)
Q Consensus 864 ~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~---~--------------~~~~--~~~--~~v~l~L~ 922 (1255)
.+|+.||+....+|++. +++....++.+... ...++.++. . ..+. ..+ ..+.++++
T Consensus 207 ~aK~~i~~~~~~~vin~-Dd~~~~~~~~~~~~--~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 283 (822)
T PRK11930 207 MEKLKLFKDCDVIIYNG-DNELISSCITKSNL--TLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFI 283 (822)
T ss_pred HHHHHHhcCCCEEEEeC-CCHHHHHHHHhhhc--CCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEEecCC
Confidence 99999999877888887 44444333332211 111222210 0 0111 111 24678999
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccc
Q psy15432 923 STVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTG 1002 (1255)
Q Consensus 923 G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1255)
|.||++|+++|++++..
T Consensus 284 G~hnv~NalaAia~a~~--------------------------------------------------------------- 300 (822)
T PRK11930 284 DDASIENLIHCIAVLLY--------------------------------------------------------------- 300 (822)
T ss_pred CHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 99999999999998775
Q ss_pred ccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCC
Q psy15432 1003 NQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNV 1078 (1255)
Q Consensus 1003 n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~ 1078 (1255)
+|++ +++.++|++|+ +|||||++.. ++.++|.| |||||+||+++++.++.... .
T Consensus 301 ----------lGi~~~~i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~------------~ 358 (822)
T PRK11930 301 ----------LGYSADQIQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQ------------S 358 (822)
T ss_pred ----------cCCCHHHHHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhccc------------C
Confidence 4666 67999999999 9999999974 46788999 99999999999999986431 1
Q ss_pred CcEEEEEecCCC--CChh----hhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHH
Q psy15432 1079 IQRILVFNVTGE--RDPT----KLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMF 1152 (1255)
Q Consensus 1079 ~~~vlVfg~~~d--rD~~----~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 1152 (1255)
+++++|+|.|.+ .+.. .+.+.+ ....+|.+++.+......... +......+..+.++..+.+...
T Consensus 359 ~~~ilIlG~m~elG~~~~~~~~~l~~~l-~~~~i~~vi~~G~~~~~~~~~--------~~~~~~~~~~~~e~a~~~l~~~ 429 (822)
T PRK11930 359 KKKTLILSDILQSGQSPEELYRKVAQLI-SKRGIDRLIGIGEEISSEASK--------FEGTEKEFFKTTEAFLKSFAFL 429 (822)
T ss_pred CCEEEEECChHhcCchHHHHHHHHHHHH-HHcCCCEEEEECHHHHHHHHh--------cCccccEEECCHHHHHHHHHHh
Confidence 467999997754 2233 334444 335688999887653321111 1111123456788999999999
Q ss_pred cCCCceEEeecCCCCCCccccccccccc
Q psy15432 1153 RMNKSAELKRNQSSLPMGPHFEIDPKTY 1180 (1255)
Q Consensus 1153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1180 (1255)
..+.+++|+||||++.|+++.+.+.+..
T Consensus 430 ~~~gDvVLlKGSr~~~le~i~~~~~~~~ 457 (822)
T PRK11930 430 KFRNELILVKGARKFEFEQITELLEQKV 457 (822)
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998887775544
No 30
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.2e-35 Score=358.60 Aligned_cols=344 Identities=18% Similarity=0.159 Sum_probs=239.5
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.++..+..+||++.|+.+||+++|-+.+++.|+.+...++..-..-+- .....+ ..+.+ ..-|+
T Consensus 26 ~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~~v~~~-~~~~~~-----------~~~~~----~i~V~ 89 (479)
T PRK14093 26 RDVTGISIDSRTLAPGDAYFAIKGDVHDGHAFVAAALKAGAALAVVER-AQRDKF-----------AADAP----LLVVD 89 (479)
T ss_pred CceeEEEeecCCCCCCCEEEEeccCcCChHHHHHHHHHcCCcEEEEec-cccccc-----------CCCCC----EEEEC
Confidence 468889999999999999999999999999987665554332111100 000000 00111 25789
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHH
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~ 169 (1255)
+++++|+.|+..+++..++++|+||||||||||+.|++++|+..|.++++.++-. ..+ |.|.+
T Consensus 90 d~~~al~~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n-----~~i---G~p~~--------- 152 (479)
T PRK14093 90 DVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFN-----NHW---GVPLS--------- 152 (479)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCC-----Ccc---chhHH---------
Confidence 9999999999888877788999999999999999999999999997766554421 111 11110
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--Ccccc-ccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDN-TNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~-tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
+. - ...++|++|+|+|+. |+++. +..+ +|+++|||||+.||+++|| |
T Consensus 153 ------------------------l~---~-~~~~~~~~V~E~g~s~~~e~~~~~~~~-~PdiaViTNI~~DHLd~~g-t 202 (479)
T PRK14093 153 ------------------------LA---R-CPADARFAVFEIGMNHAGEIEPLVKMV-RPHVAIITTVEPVHLEFFS-G 202 (479)
T ss_pred ------------------------HH---c-CCCCCcEEEEEeCCCCCchHHHHhccc-CCCEEEEcCCCHHHHhhcC-C
Confidence 00 0 236789999999976 44443 3333 7999999999999999999 9
Q ss_pred HHHHHHHHHccc---CCCceeeeccCCCchHHHHHHHhhhcc---CceEEEcCCcce--------------eeec----C
Q psy15432 247 IEEITMQKAGIM---KPNCIAVTSANQRGPCKQILLETSRAL---NCVLLEAPSILN--------------YRWR----G 302 (1255)
Q Consensus 247 le~Ia~~KagI~---k~g~~~v~~~~q~~e~~~vl~~~a~~~---~~~l~~~~~~~~--------------~~~~----~ 302 (1255)
+|+|+.+|..|| +++..+|++. +++.. ..+.+.+... .+..|......+ +.+. .
T Consensus 203 ~e~~~~aK~~l~~~~~~~g~~VlN~-Dd~~~-~~l~~~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (479)
T PRK14093 203 IEAIADAKAEIFTGLEPGGAAVLNR-DNPQF-DRLAASARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILGHD 280 (479)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEeC-CcHHH-HHHHHHhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECCce
Confidence 999999999999 4556778876 55443 3343333211 111222211111 1111 1
Q ss_pred cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCC
Q psy15432 303 QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETP 382 (1255)
Q Consensus 303 ~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1255)
..+.++++|.||++|+++|++++..+
T Consensus 281 ~~~~l~l~G~hnv~NalaAia~a~~l------------------------------------------------------ 306 (479)
T PRK14093 281 VTYKLGMPGRHIAMNSLAVLAAAELA------------------------------------------------------ 306 (479)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHc------------------------------------------------------
Confidence 24678999999999999999988764
Q ss_pred CCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe---cC-cEEEEc-cCCCHHHHHHHHHHHHhhhhccc
Q psy15432 383 GGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK---NN-FKYFLD-GAHTTDSIELCAKWFLRKSEAEA 456 (1255)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~---~~-~~vilD-gAHnp~si~~~l~~l~~~~~~~~ 456 (1255)
|++ .++++++|++++ .|||+|.++. ++ ..+|.| |||||+||+++++++++.....
T Consensus 307 -----------------Gi~-~~~i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~- 367 (479)
T PRK14093 307 -----------------GAD-LALAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGP- 367 (479)
T ss_pred -----------------CCC-HHHHHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccC-
Confidence 667 899999999999 9999998753 23 444445 9999999999999998753100
Q ss_pred ccCccCCCCCCCCCccCCCCCccEEEEEecC---CCC---ChhhhhHHhhccCCCcEEEEcC
Q psy15432 457 SSSRSVSSCPLDPTQSKSSNVIQRILVFNVT---GER---DPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~---~dr---D~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++|+|+|||.| +++ -+.++.+.+ +...+|.|+++.
T Consensus 368 --------------------~~r~i~V~G~m~elg~~~~~~h~~~~~~~-~~~~~d~v~~~G 408 (479)
T PRK14093 368 --------------------QGRRIAVLGDMLELGPRGPELHRGLAEAI-RANAIDLVFCCG 408 (479)
T ss_pred --------------------CCCEEEEECChHHcCcHHHHHHHHHHHHH-HHcCCCEEEEEc
Confidence 12789999986 333 244555555 445689999983
No 31
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.4e-35 Score=355.92 Aligned_cols=329 Identities=14% Similarity=0.075 Sum_probs=229.3
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.+.++..+.. +-.+. .+.++|+||||||||||++|+++||+..|.++++.++. |.|+...
T Consensus 105 v~~~~e~~~~-~~~~~---~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~~~~---- 164 (480)
T PRK01438 105 VWGEVELAWR-LRDPD---RPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPVLDA---- 164 (480)
T ss_pred ecchHHHHHH-hhhcc---CCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHHHHH----
Confidence 4555554333 32222 24679999999999999999999999999988765441 4443210
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 858 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~T 858 (1255)
+....+.|++|+|+|+++. +..+++ +|+++|||||++||+++|| |
T Consensus 165 --------------------------------~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t 209 (480)
T PRK01438 165 --------------------------------VRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-S 209 (480)
T ss_pred --------------------------------HhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-C
Confidence 0144578999999999854 566766 6999999999999999999 9
Q ss_pred HHHHHHHHhccccCC-ceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc----cc------------eecc--CC----
Q psy15432 859 IEEITMQKAGIMKPN-CIAVTSANQRGPCKQILLETSRALNCVLLEAPSI----LN------------YRWR--GQ---- 915 (1255)
Q Consensus 859 leeIA~~KagI~K~g-~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----~~------------~~~~--~~---- 915 (1255)
+|+|+.+|++||+++ ..+|++. +++.+.+++.+.+.+.+++++.++.. .. +... +.
T Consensus 210 ~e~ia~~K~~I~~~~~~~~v~n~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (480)
T PRK01438 210 MEAYAAAKARIYEGTTVACVYNV-ADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALEL 288 (480)
T ss_pred HHHHHHHHHHHHhCCCceEEEeC-CcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeecccccccccee
Confidence 999999999999976 4566766 56666666665554445555443210 00 1011 00
Q ss_pred --ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCC
Q psy15432 916 --PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 993 (1255)
Q Consensus 916 --~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1255)
...++++|.||++|+++|++++..
T Consensus 289 ~~~~~l~l~G~hn~~Na~aAia~~~~------------------------------------------------------ 314 (480)
T PRK01438 289 ATLEDLRPAAPHNIANALAAAALARS------------------------------------------------------ 314 (480)
T ss_pred eeHHHcCCCCHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 124789999999999999997764
Q ss_pred CCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeecCcEEEEE--cCcCHHHHHHHHHHHHhhhccccC
Q psy15432 994 PGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKNNFKYFLD--GAHTTDSIELCAKWFLRKSEAEAN 1069 (1255)
Q Consensus 994 ~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~~~~vilD--gAHNP~S~~a~l~~l~~~~~~~~~ 1069 (1255)
++++ +.+.+||++++ ||||||++...+..+|+| |||||+|++++++.++
T Consensus 315 -------------------lgi~~~~i~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ahNp~a~~aaL~~l~-------- 367 (480)
T PRK01438 315 -------------------FGVPPAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAAASLAAYP-------- 367 (480)
T ss_pred -------------------cCCCHHHHHHHHHhCCCCCCceEEEEEECCEEEEecCccCCHHHHHHHHHhCC--------
Confidence 4566 67999999999 779999997653334555 9999999999887651
Q ss_pred CCcccCCCCCcEEEEEe-cCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccccccccc-----CCHH
Q psy15432 1070 PTQSKSSNVIQRILVFN-VTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSIN-----ISLA 1143 (1255)
Q Consensus 1070 ~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 1143 (1255)
++++||| ++.|||.+.|++.+ ...++.+++++........... .....-..... .+.+
T Consensus 368 ----------~i~~I~gG~~~~kd~~~~~~~l--~~~~~~vi~~g~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~ 431 (480)
T PRK01438 368 ----------SVVWIAGGLAKGADFDDLVRRA--AGRLRGVVLIGADRAEIAEALA----RHAPDVPVVEVDRTDTGAMD 431 (480)
T ss_pred ----------CEEEEEecccCCCCHHHHHHHH--HhhceEEEEECCCHHHHHHHHH----hcCCCCCEEEecCCCcCCHH
Confidence 4689995 99999999999988 3347888888654322211110 00000011111 1678
Q ss_pred HHHHHHHHHcCC-CceEEeecCCCCCCc-------cccccccccc
Q psy15432 1144 IQLAYLWMFRMN-KSAELKRNQSSLPMG-------PHFEIDPKTY 1180 (1255)
Q Consensus 1144 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~-------~~~~~~~~~~ 1180 (1255)
+.++.+.....+ +.+.+..++.|++|- ++|..+.+..
T Consensus 432 ~A~~~a~~~~~~~d~vllsp~~as~d~f~~~~~Rg~~F~~~v~~~ 476 (480)
T PRK01438 432 EAVAAAAKLARPGDTVLLAPAAASMDMFTDYAARGDAFAAAVRAL 476 (480)
T ss_pred HHHHHHHHhCCCCCEEEechhhhccccccCHHHHHHHHHHHHHHh
Confidence 888777654443 678899999999997 5555555544
No 32
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=5.2e-35 Score=350.82 Aligned_cols=335 Identities=16% Similarity=0.134 Sum_probs=236.1
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcH-HHHHHHHHhcchhHHHHHhhhcCCCcccccccch
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQV 88 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 88 (1255)
.+++.+..+||++.|+.+||+.+|-+.+++.|+.+...+....-. ++++ ..+.| .+.+
T Consensus 22 ~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~Ga~~vv~~~~~-----------------~~~~p----~i~v 80 (453)
T PRK10773 22 ITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADDAKAAGAGALLVSRPL-----------------DIDLP----QLVV 80 (453)
T ss_pred eeeeEEEeeCCCCCCCcEEEEecCCCCCHHHHHHHHHHCCCeEEEEecCc-----------------CCCCC----EEEE
Confidence 478899999999999999999999999999887665554332111 1100 00112 2677
Q ss_pred HHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHH
Q psy15432 89 DQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYF 168 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~ 168 (1255)
++++.+|+.|+...++.+..++|+||||||||||+.|+++||+..|..++ ++. +++..+ |.|.+
T Consensus 81 ~d~~~al~~la~~~~~~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~---t~g--n~n~~~---G~~~~-------- 144 (453)
T PRK10773 81 KDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNTLY---TAG--NLNNDI---GVPLT-------- 144 (453)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEcCCCchHHHHHHHHHHHHhcCcccc---cCc--cccCCc---ccccH--------
Confidence 88999999998887766678999999999999999999999999987533 332 111111 22221
Q ss_pred HHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 169 WTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 169 ~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
.+ ....++|++|||+|+. |+++..--+.+|+++|||||+.||+++|| |
T Consensus 145 -------------------~~----------~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~g-s 194 (453)
T PRK10773 145 -------------------LL----------RLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFG-S 194 (453)
T ss_pred -------------------Hh----------cCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcC-C
Confidence 00 0234689999999975 77764433337999999999999999999 9
Q ss_pred HHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCC----------------cceeeec----Cc
Q psy15432 247 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS----------------ILNYRWR----GQ 303 (1255)
Q Consensus 247 le~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~----------------~~~~~~~----~~ 303 (1255)
+|+|+.+|+.||+ ++..+|++. +++. ...+.+.........|.... ...+.+. ..
T Consensus 195 ~e~~~~aK~~l~~~~~~~g~~vln~-Dd~~-~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~ 272 (453)
T PRK10773 195 LAGVAKAKGEIFSGLPENGIAIMNA-DSND-WLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV 272 (453)
T ss_pred HHHHHHHHHHHHcccCCCCEEEEEC-CcHh-HHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE
Confidence 9999999999995 345677776 4443 33333322211111222110 0011111 12
Q ss_pred ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCC
Q psy15432 304 PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPG 383 (1255)
Q Consensus 304 ~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1255)
.+.++++|.||++|+++|++++..+
T Consensus 273 ~~~l~l~G~hnv~NalaAia~a~~l------------------------------------------------------- 297 (453)
T PRK10773 273 DVLLPLPGRHNIANALAAAALAMSV------------------------------------------------------- 297 (453)
T ss_pred EEEecCCcHhHHHHHHHHHHHHHHc-------------------------------------------------------
Confidence 4678999999999999999988765
Q ss_pred CCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCc
Q psy15432 384 GQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSR 460 (1255)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~ 460 (1255)
|++ ++.+.++|++++ +|||||++.. ++.++|.| |||||+||+++++.++.. ++
T Consensus 298 ----------------Gi~-~~~i~~~L~~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~-~~------ 353 (453)
T PRK10773 298 ----------------GAT-LDAVKAGLANLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEM-PG------ 353 (453)
T ss_pred ----------------CCC-HHHHHHHHHhCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhC-CC------
Confidence 667 899999999999 9999999874 45666667 999999999999999864 21
Q ss_pred cCCCCCCCCCccCCCCCccEEEEEecCCCC------ChhhhhHHhhccCCCcEEEEc
Q psy15432 461 SVSSCPLDPTQSKSSNVIQRILVFNVTGER------DPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~ilVfg~~~dr------D~~~ll~~L~~~~~~d~vi~t 511 (1255)
++++|||.|.+- -+.++.+.+ +...+|.++++
T Consensus 354 ------------------r~i~VlG~m~elG~~~~~~h~~~~~~~-~~~~~d~v~~~ 391 (453)
T PRK10773 354 ------------------YRVMVVGDMAELGAESEACHRQVGEAA-KAAGIDKVLSV 391 (453)
T ss_pred ------------------CEEEEECChhhcchHHHHHHHHHHHHH-HHcCCCEEEEE
Confidence 578999987652 233444444 44568999876
No 33
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-34 Score=347.19 Aligned_cols=302 Identities=17% Similarity=0.120 Sum_probs=212.9
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCC
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 798 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~p 798 (1255)
+.++|+||||||||||++|+++||+.+|+++.+-++ | |.|+....
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gn---------i---g~~~~~~~----------------------- 157 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGN---------I---GTAVLTLE----------------------- 157 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCc---------c---chhhhhcc-----------------------
Confidence 358999999999999999999999999988754432 2 44432100
Q ss_pred cHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCC--ceE
Q psy15432 799 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN--CIA 876 (1255)
Q Consensus 799 t~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g--~~a 876 (1255)
...+.|++|+|+|+.+ +|.||++ +|+++|||||++||+++|| |+|+|+.+|++||++. +++
T Consensus 158 --------------~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 158 --------------PPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred --------------cCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 2236799999999976 6999998 6999999999999999999 8999999999999987 789
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc------------ceeccCC----ccc----cCCCchhHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL------------NYRWRGQ----PLD----EDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~------------~~~~~~~----~v~----l~L~G~hq~~Na~lAial 936 (1255)
|++. +++....+ .+.+...+++++.++... .+..... .+. ++++|.||+.|+++|+++
T Consensus 221 V~n~-dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa 298 (460)
T PRK01390 221 VIGV-DDAYCRAI-ADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAA 298 (460)
T ss_pred EEeC-CCHHHHHH-HHhccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHH
Confidence 9987 55555544 343433455555443210 0111100 011 478999999999999998
Q ss_pred HHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC
Q psy15432 937 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 1016 (1255)
Q Consensus 937 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~ 1016 (1255)
+.. +|++
T Consensus 299 ~~~-------------------------------------------------------------------------lgi~ 305 (460)
T PRK01390 299 ARA-------------------------------------------------------------------------LGLS 305 (460)
T ss_pred HHH-------------------------------------------------------------------------cCCC
Confidence 875 4566
Q ss_pred -HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCC
Q psy15432 1017 -PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERD 1092 (1255)
Q Consensus 1017 -~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD 1092 (1255)
+.+.+||+++. ||||||++.. ++..+|.| |||||+|++++++.+ .++++|+|...+++
T Consensus 306 ~~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~------------------~~i~~I~G~~d~~~ 367 (460)
T PRK01390 306 PEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF------------------DRIYWIAGGKPKEG 367 (460)
T ss_pred HHHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC------------------CCeEEEecCccCCC
Confidence 67999999996 9999999986 46677779 999999999887743 24688998544444
Q ss_pred hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc-ccccccCCHHHHHHHHHHHc----CC-CceEEeecCCC
Q psy15432 1093 PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS-TVQSINISLAIQLAYLWMFR----MN-KSAELKRNQSS 1166 (1255)
Q Consensus 1093 ~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~----~~-~~~~l~~~~~~ 1166 (1255)
.-+.|..+ . ..++.+++++.....-.... +. .......+.++.+..++... .+ +.+.|..|+.|
T Consensus 368 ~~~~L~~~-~-~~v~~v~~~g~~~~~l~~~~--------~~~~~~~~~~~l~~Av~~a~~~a~~~~~~g~~vllsP~~as 437 (460)
T PRK01390 368 GIESLAPF-F-PRIAKAYLIGEAAEAFAATL--------GGAVPFEICGTLERAVAAAAADAAADGAPEPVVLLSPACAS 437 (460)
T ss_pred CHHHHHHH-H-HhhCEEEEECCCHHHHHHHH--------hcCCCEEEeCCHHHHHHHHHHhhhccCCCCCEEEeChhhhc
Confidence 44444444 2 34666777654332221111 11 11223457888888887765 44 56778889999
Q ss_pred CCCcccccc
Q psy15432 1167 LPMGPHFEI 1175 (1255)
Q Consensus 1167 ~~~~~~~~~ 1175 (1255)
++|-+-|+.
T Consensus 438 ~d~f~~~~~ 446 (460)
T PRK01390 438 FDQFKNFEV 446 (460)
T ss_pred cccccCHHH
Confidence 999855543
No 34
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-34 Score=344.29 Aligned_cols=337 Identities=19% Similarity=0.163 Sum_probs=250.0
Q ss_pred chHHHHHHHHH-----hcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeee-CCeecC
Q psy15432 699 QVDQVVQYLGH-----LNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKL-NGEPIS 772 (1255)
Q Consensus 699 ~v~~~~~~L~~-----Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~I-nG~pIs 772 (1255)
.+.+++..+.. .+.|. .++++|+||||||||||+.++.++++..|.++++.++-. ..+ .|...+
T Consensus 68 ~V~~~~~~~~~~a~~~y~~ps---~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~~~~~~~ 137 (475)
T COG0769 68 VVTGTNGKLTTLALAFYGLPS---GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELSPGILEP 137 (475)
T ss_pred EEcCcHHHHHHHHHHhccCcc---cCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eeccCCcccc
Confidence 44444444433 35554 568999999999999999999999999999999998754 222 233332
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC----CccccccccCCCcEEEEcCCC
Q psy15432 773 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNTNIIPNTAVVGITSLG 848 (1255)
Q Consensus 773 ~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G----Gr~D~TNvi~~P~VavITnIg 848 (1255)
....++..-.+++.+.+ +++.+++++|||++++ +|.+.+.+ +++++|||+
T Consensus 138 ~~~tTP~~~~l~~~~~~----------------------~~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls 191 (475)
T COG0769 138 TGLTTPEALDLQNLLRD----------------------LLDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLS 191 (475)
T ss_pred cCCCCccHHHHHHHHHH----------------------HHHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccC
Confidence 22333333333333333 3889999999999998 78888887 688999999
Q ss_pred chhhhhcCCCHHHHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------------
Q psy15432 849 YDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL----------------- 908 (1255)
Q Consensus 849 ~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~----------------- 908 (1255)
.||++++| |+|+|+..|..+|+ ++..+|+++ |++....++..........+.++...
T Consensus 192 ~DHlD~h~-t~e~Y~~aK~~lf~~~~~~~~~Vin~--dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 268 (475)
T COG0769 192 RDHLDYHG-TMEYYGAAKAVLFESLPHSGEAVINP--DDGHGLDYKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGS 268 (475)
T ss_pred chhhcccC-cHHHHHHHHHHHHhhcCCCccEEEcc--CCchHHHHHHHHHhcCCCEEEeCCCCchhhhhhccceeeeccc
Confidence 99999999 99999999999985 667889998 44444333444433322333333210
Q ss_pred ----ceeccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCC
Q psy15432 909 ----NYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGG 984 (1255)
Q Consensus 909 ----~~~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1255)
.+.+....+.++|+|.||++|+++|++++..
T Consensus 269 ~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~--------------------------------------------- 303 (475)
T COG0769 269 DFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALA--------------------------------------------- 303 (475)
T ss_pred eeEEEccCCceeEeccccchhHHHHHHHHHHHHHH---------------------------------------------
Confidence 1123335678999999999999999998876
Q ss_pred CCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeecCcEEEEEcCcCHHHHHHHHHHHHh
Q psy15432 985 QGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLR 1062 (1255)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~~~~vilDgAHNP~S~~a~l~~l~~ 1062 (1255)
+|+| ++|+++|++++ +|||||.+..++..+++||||||+|++.+++.++.
T Consensus 304 ----------------------------lG~~~e~i~~~l~~~~~v~GRmE~v~~~~~~v~VDyAHnPd~le~~L~~~~~ 355 (475)
T COG0769 304 ----------------------------LGVDLEDILAGLETLKPVPGRMELVNIGGKLVIVDYAHNPDGLEKALRAVRL 355 (475)
T ss_pred ----------------------------cCCCHHHHHHHHHhcCCCCCcceEecCCCCeEEEEeccChHHHHHHHHHHHh
Confidence 5677 77999999999 99999999988889999999999999999999984
Q ss_pred hhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhh---cCCCCcEEEEcCCCCcccccccCCCCCccccc----cc
Q psy15432 1063 KSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL---QSNQFEYILVTPNILTNEIRWRGQPLDEDWKS----TV 1135 (1255)
Q Consensus 1063 ~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~---~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~----d~ 1135 (1255)
.. .+++++||||.||||..+ +++| +...+|.+++|+++|+.+.+.. . ..+.-.+ +.
T Consensus 356 ~~-------------~g~li~VfG~gGDrD~~k--r~~mg~ia~~~ad~vivt~dnpR~edp~~-i-~~~i~~g~~~~~~ 418 (475)
T COG0769 356 HA-------------AGRLIVVFGCGGDRDKSK--RPDMGAIAEQLADIVIVTSDNPRSEDPAV-I-LADILAGIEAPEK 418 (475)
T ss_pred hc-------------CCcEEEEECccCCCCccc--ccchHHHHHhcCCcEEEcCCCCCCcCHHH-H-HHHHHhccCCccc
Confidence 32 156999999999999887 6666 5667899999999999886542 0 0000001 11
Q ss_pred ccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1136 QSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
..+..+..+.+.++-....+++++++-|.
T Consensus 419 ~~~~~dr~~AI~~ai~~a~~~D~vliagk 447 (475)
T COG0769 419 YEIIEDREEAIRKALDLAKEGDVVLIAGK 447 (475)
T ss_pred eecchhHHHHHHHHHHhhccCCEEEEeec
Confidence 34445889999999998889998887765
No 35
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.7e-33 Score=340.02 Aligned_cols=250 Identities=15% Similarity=0.138 Sum_probs=188.9
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||++|+++||+.+|.++++.++. |.|+..
T Consensus 121 ~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~~~------------------------- 163 (480)
T PRK01438 121 PAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPVLD------------------------- 163 (480)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHHHH-------------------------
Confidence 5679999999999999999999999999988765431 222110
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc-eee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAV 265 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~-~~v 265 (1255)
. .....+.|++|+|+|+++. +..+++ +|+++|||||+.||+++|| |+|+|+.+|++||+++. .+|
T Consensus 164 ------~-----~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~~~~~~~v 229 (480)
T PRK01438 164 ------A-----VRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYEGTTVACV 229 (480)
T ss_pred ------H-----HhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhCCCceEE
Confidence 0 0134578999999999865 556766 6999999999999999999 99999999999999764 455
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCC----cce------------eeec--Cc------ccccCCCchhHHhhHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPS----ILN------------YRWR--GQ------PLDEDWKSTVQSINISLA 321 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~----~~~------------~~~~--~~------~i~l~l~G~~q~~Na~lA 321 (1255)
++. +++.+..++.+.+.+.+++++.++. ..+ +... +. ...++++|.||++|+++|
T Consensus 230 ~n~-dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 230 YNV-ADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EeC-CcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 655 6677776666554444444433210 000 1011 00 124789999999999999
Q ss_pred HHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCC
Q psy15432 322 IQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHF 401 (1255)
Q Consensus 322 ia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (1255)
++++..+ ++
T Consensus 309 ia~~~~l-----------------------------------------------------------------------gi 317 (480)
T PRK01438 309 AALARSF-----------------------------------------------------------------------GV 317 (480)
T ss_pred HHHHHHc-----------------------------------------------------------------------CC
Confidence 9977654 56
Q ss_pred CChHHHHHHHhcCC-CCCceEEEEec-CcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCc
Q psy15432 402 EIDPKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVI 478 (1255)
Q Consensus 402 ~l~e~i~~gL~~~~-~pGR~e~v~~~-~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1255)
+ .+.+++||++++ ||||||++... ++.+|.| |||||+|++++++.+ .
T Consensus 318 ~-~~~i~~~L~~~~~~~gR~E~i~~~~~~~iiDDs~ahNp~a~~aaL~~l------~----------------------- 367 (480)
T PRK01438 318 P-PAAVRDGLRAFRPDAHRIEHVADADGVTWVDDSKATNPHAAAASLAAY------P----------------------- 367 (480)
T ss_pred C-HHHHHHHHHhCCCCCCceEEEEEECCEEEEecCccCCHHHHHHHHHhC------C-----------------------
Confidence 7 899999999999 77999999764 4444445 999999999988765 1
Q ss_pred cEEEEEe-cCCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 479 QRILVFN-VTGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 479 ~~ilVfg-~~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
++++||| +..+||...|++.+ ...+|.+|++
T Consensus 368 ~i~~I~gG~~~~kd~~~~~~~l--~~~~~~vi~~ 399 (480)
T PRK01438 368 SVVWIAGGLAKGADFDDLVRRA--AGRLRGVVLI 399 (480)
T ss_pred CEEEEEecccCCCCHHHHHHHH--HhhceEEEEE
Confidence 5789996 99999999999988 3457889888
No 36
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=9.8e-34 Score=361.99 Aligned_cols=344 Identities=13% Similarity=0.140 Sum_probs=239.7
Q ss_pred ecccccccccccc--CCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccc
Q psy15432 10 KELKLNKDAHRKT--LPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQ 87 (1255)
Q Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 87 (1255)
.+++.+..+||++ .|+.+||+++|-+.+++.|+.+...++...-.-+- +. ... ....+.+ .+.
T Consensus 22 ~~i~~i~~DSR~v~~~~g~lFval~G~~~DGh~fi~~A~~~GA~~iv~~~-~~----~~~------~~~~~~~----~i~ 86 (822)
T PRK11930 22 AIIDQILTDSRSLSFPENTLFFALKGERNDGHRYIQELYEKGVRNFVVSE-EK----HPE------ESYPDAN----FLK 86 (822)
T ss_pred ceeCEEEecCCccCCCCCcEEEEeCCCCCCHHHHHHHHHHCCCEEEEEec-cc----ccc------ccCCCCC----EEE
Confidence 4688899999999 99999999999999998887666555332111100 00 000 0000111 267
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
|++++++|+.|+..++...++++|+||||||||||+.|+++||+..|..++. +. +++.+ +..+
T Consensus 87 V~d~~~al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~---~~--~~n~~------------ig~p 149 (822)
T PRK11930 87 VKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRS---PR--SYNSQ------------IGVP 149 (822)
T ss_pred ECCHHHHHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecC---Cc--ccCcc------------hhHH
Confidence 8999999999998887766889999999999999999999999987754433 21 11111 1111
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcchhhhcCC
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLGN 245 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DHld~lG~ 245 (1255)
. + +. ....++|++|||+|+. |..+...-+.+|+++|||||+.||+++||
T Consensus 150 ~------------------~------~~----~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~g- 200 (822)
T PRK11930 150 L------------------S------VW----QLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFR- 200 (822)
T ss_pred H------------------H------Hh----cCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcC-
Confidence 0 0 00 1357889999999976 55554333337999999999999999999
Q ss_pred CHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCC-cc--------------eeee--cC--cccc
Q psy15432 246 TIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-IL--------------NYRW--RG--QPLD 306 (1255)
Q Consensus 246 Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-~~--------------~~~~--~~--~~i~ 306 (1255)
|+|+|+.+|+.||+....+|++. +++.....+.+.........+.... .. .+.+ .+ ..+.
T Consensus 201 t~e~y~~aK~~i~~~~~~~vin~-Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~ 279 (822)
T PRK11930 201 SIKQKIMEKLKLFKDCDVIIYNG-DNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFE 279 (822)
T ss_pred CHHHHHHHHHHHhcCCCEEEEeC-CCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEEE
Confidence 99999999999998776677776 5554444333221111111222110 00 1111 11 2467
Q ss_pred cCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCC
Q psy15432 307 EDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386 (1255)
Q Consensus 307 l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1255)
++++|.||++|+++|++++..+
T Consensus 280 l~l~G~hnv~NalaAia~a~~l---------------------------------------------------------- 301 (822)
T PRK11930 280 IPFIDDASIENLIHCIAVLLYL---------------------------------------------------------- 301 (822)
T ss_pred ecCCCHHHHHHHHHHHHHHHHc----------------------------------------------------------
Confidence 8999999999999999988765
Q ss_pred CccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCC
Q psy15432 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVS 463 (1255)
Q Consensus 387 ~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~ 463 (1255)
|++ ++++.++|++|+ +|||||++.. +++.+|+| |||||+|+++++++++.....
T Consensus 302 -------------Gi~-~~~i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~--------- 358 (822)
T PRK11930 302 -------------GYS-ADQIQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQS--------- 358 (822)
T ss_pred -------------CCC-HHHHHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhcccC---------
Confidence 667 899999999999 9999999974 56889999 999999999999999864321
Q ss_pred CCCCCCCccCCCCCccEEEEEecCCC--C----ChhhhhHHhhccCCCcEEEEc
Q psy15432 464 SCPLDPTQSKSSNVIQRILVFNVTGE--R----DPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 464 ~~~~~~~~~~~~~~~~~ilVfg~~~d--r----D~~~ll~~L~~~~~~d~vi~t 511 (1255)
.++++|+|.+.+ . .++.+.+.+ ....+|.||+.
T Consensus 359 --------------~~~ilIlG~m~elG~~~~~~~~~l~~~l-~~~~i~~vi~~ 397 (822)
T PRK11930 359 --------------KKKTLILSDILQSGQSPEELYRKVAQLI-SKRGIDRLIGI 397 (822)
T ss_pred --------------CCEEEEECChHhcCchHHHHHHHHHHHH-HHcCCCEEEEE
Confidence 167899887643 2 445555555 33557888885
No 37
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=4.6e-33 Score=334.72 Aligned_cols=307 Identities=14% Similarity=0.116 Sum_probs=215.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|++...+.. |..-... .+
T Consensus 108 ~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~g-------------g~~~~~~----------------------~~-- 150 (461)
T PRK00421 108 TSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIG-------------GILNAAG----------------------TN-- 150 (461)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEC-------------ceeccCC----------------------cc--
Confidence 7999999999999999999999999975333221 1100000 00
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc---CCCceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~---k~g~~~v 265 (1255)
+ ...+.|++|+|+|+.... ...+ +|+++|||||+.||+++|| |+|+|+..|..|+ +++..+|
T Consensus 151 ------~-----~~~~~~~~V~E~ss~q~~-~~~~--~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~V 215 (461)
T PRK00421 151 ------A-----RLGNSDYFVAEADESDRS-FLKL--HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 215 (461)
T ss_pred ------c-----ccCCCCEEEEECCCccch-Hhhc--CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 0 113579999999987431 1223 7999999999999999999 9999998877655 5566777
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcC--Cc--------------ceeeec--Cc---ccccCCCchhHHhhHHHHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAP--SI--------------LNYRWR--GQ---PLDEDWKSTVQSINISLAIQL 324 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~--~~--------------~~~~~~--~~---~i~l~l~G~~q~~Na~lAia~ 324 (1255)
++. +++.+.....+.. +.++.++ .. ..+.+. +. .+.+++.|.||.+|+++|+++
T Consensus 216 ~n~-dd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~ 290 (461)
T PRK00421 216 ACG-DDPELRELLPRVS----RPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAV 290 (461)
T ss_pred EEC-CCHHHHHHHHhcC----CCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 776 5665555443321 1222111 10 011111 01 356789999999999999998
Q ss_pred HHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCh
Q psy15432 325 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404 (1255)
Q Consensus 325 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 404 (1255)
+..+ +++ +
T Consensus 291 ~~~l-----------------------------------------------------------------------gv~-~ 298 (461)
T PRK00421 291 ALEL-----------------------------------------------------------------------GID-D 298 (461)
T ss_pred HHHc-----------------------------------------------------------------------CCC-H
Confidence 8764 566 8
Q ss_pred HHHHHHHhcCC-CCCceEEEEec-CcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEE
Q psy15432 405 PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRIL 482 (1255)
Q Consensus 405 e~i~~gL~~~~-~pGR~e~v~~~-~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 482 (1255)
+++.++|++|+ ||||||++... ++.||+||||||+++++++++++..... +++++
T Consensus 299 ~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~~-----------------------~~i~~ 355 (461)
T PRK00421 299 EAIREALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYPD-----------------------KRIVA 355 (461)
T ss_pred HHHHHHHHhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCCC-----------------------CeEEE
Confidence 99999999997 99999999764 6789999999999999999999875421 27899
Q ss_pred EEe---cCCCCChhh-hhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCC
Q psy15432 483 VFN---VTGERDPTK-LLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQ 558 (1255)
Q Consensus 483 Vfg---~~~drD~~~-ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1255)
||| ..++||... |++.+ ..+|.+++|+.+++.|.++...
T Consensus 356 v~gp~~~~r~kd~~~~~~~~l---~~~d~vi~~~~~~~~e~~~~~~---------------------------------- 398 (461)
T PRK00421 356 VFQPHRYSRTRDLLDEFAEAL---SDADEVILLDIYAAGEEPIGGV---------------------------------- 398 (461)
T ss_pred EECCCCCccHHHHHHHHHHHH---HHCCEEEEcCccCCCCCCCCCC----------------------------------
Confidence 998 666777554 55544 4579999998888776531110
Q ss_pred CCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEec
Q psy15432 559 GGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTG 638 (1255)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtG 638 (1255)
..+.|.+.++. ....+..++|+++|++++.... .+++.|||+|
T Consensus 399 ----------------------------------~~~~l~~~~~~--~~~~~~~~~~~~~a~~~a~~~a-~~gD~vlv~G 441 (461)
T PRK00421 399 ----------------------------------DSEDLARKIKR--GHRDPIFVPDLEDLAELLAEVL-KPGDLVLTMG 441 (461)
T ss_pred ----------------------------------CHHHHHHHHhc--cCCceEEeCCHHHHHHHHHHhc-CCCCEEEEEC
Confidence 00224444432 1234678899999999998876 4667899999
Q ss_pred ccc
Q psy15432 639 SLH 641 (1255)
Q Consensus 639 Slh 641 (1255)
.-|
T Consensus 442 ~g~ 444 (461)
T PRK00421 442 AGD 444 (461)
T ss_pred CCC
Confidence 866
No 38
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-33 Score=339.58 Aligned_cols=306 Identities=17% Similarity=0.138 Sum_probs=218.4
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+.+||+.+|++++..++ | |.|++.... +.
T Consensus 109 ~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gn---------i---G~~~~~~~~----------~~----------- 155 (459)
T PRK02705 109 IPWVGITGTNGKTTVTALLAHILQAAGLNAPACGN---------I---GYAACELAL----------LR----------- 155 (459)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecc---------c---ChhHHHHHh----------hh-----------
Confidence 47999999999999999999999999988765432 2 555432110 00
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
.....+.|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++
T Consensus 156 -----------~~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vln 221 (459)
T PRK02705 156 -----------SGKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRILN 221 (459)
T ss_pred -----------hccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEEE
Confidence 0134578999999998 578888876 6999999999999999999 9999999999999999999998
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEE-cCC-c--------------cceeccCC---ccccCCCchhHHHHHHHHHHHHHHH
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLE-APS-I--------------LNYRWRGQ---PLDEDWKSTVQSINISLAIQLAYLW 940 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~-~~~-~--------------~~~~~~~~---~v~l~L~G~hq~~Na~lAiala~~~ 940 (1255)
. +++....+..+. ...++. ... . ..+..... .+.++++|.||..|+++|++++..
T Consensus 222 ~-dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~- 295 (459)
T PRK02705 222 G-DDPYLRQHRSSW----PKGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARL- 295 (459)
T ss_pred C-CCHHHHHHHhcC----CceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHH-
Confidence 7 555554443221 111111 000 0 00110111 135789999999999999998875
Q ss_pred HHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHH
Q psy15432 941 MFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKT 1019 (1255)
Q Consensus 941 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i 1019 (1255)
+|++ +.+
T Consensus 296 ------------------------------------------------------------------------lgv~~~~i 303 (459)
T PRK02705 296 ------------------------------------------------------------------------AGLSAEAI 303 (459)
T ss_pred ------------------------------------------------------------------------cCCCHHHH
Confidence 4566 679
Q ss_pred HHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCChhh
Q psy15432 1020 YRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERDPTK 1095 (1255)
Q Consensus 1020 ~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ 1095 (1255)
.++|++|. ||||||++.. ++..||+| |||||+|++++++++. .++++|+| +..++|...
T Consensus 304 ~~~L~~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~-----------------~~~i~IlGg~~~~~d~~~ 366 (459)
T PRK02705 304 AEALRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVP-----------------GPVILIAGGEAKQGDDSA 366 (459)
T ss_pred HHHHHhCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCC-----------------CCeEEEecCccCCCCHHH
Confidence 99999997 9999999875 46789999 7999999999998773 24688887 566899999
Q ss_pred hhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC---CceEEeecCCCCCCccc
Q psy15432 1096 LLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN---KSAELKRNQSSLPMGPH 1172 (1255)
Q Consensus 1096 ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 1172 (1255)
+++.+ . ...+.+++++........... ... . ........+.++.+..++....+ +.+.|..++.|++|.+-
T Consensus 367 ~~~~l-~-~~~~~vi~~g~~~~~l~~~l~-~~~--~-~~~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~ 440 (459)
T PRK02705 367 WLKQI-K-AKAAAVLLFGEAAPTLAQRLQ-ESG--Y-TGEYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKN 440 (459)
T ss_pred HHHHH-H-hheeEEEEECCCHHHHHHHHH-hcC--C-CcceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccC
Confidence 99888 3 457888888744322111110 000 0 00122345788888777765554 36899999999999844
Q ss_pred c
Q psy15432 1173 F 1173 (1255)
Q Consensus 1173 ~ 1173 (1255)
|
T Consensus 441 ~ 441 (459)
T PRK02705 441 F 441 (459)
T ss_pred H
Confidence 3
No 39
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.7e-33 Score=332.07 Aligned_cols=300 Identities=15% Similarity=0.136 Sum_probs=214.9
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|+++.+-++. |.|..
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni------------g~p~~---------------------------- 148 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI------------GTPAL---------------------------- 148 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc------------CHHHH----------------------------
Confidence 79999999999999999999999999977664432 33210
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
. .+..+.|++|+|+++... +.|+.+ +|+++|||||++||+++|| |+|+|+.+|++|++++.++|++.
T Consensus 149 ----~------~~~~~~~~~V~E~ss~~l-~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~n~ 215 (448)
T PRK03803 149 ----D------LLSDDPELYVLELSSFQL-ETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVFNR 215 (448)
T ss_pred ----H------HhcCCCCEEEEEcChhhh-CcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEEeC
Confidence 0 023357999999988753 788888 6999999999999999999 89999999999999888898887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC--------------ccceeccC-C----ccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS--------------ILNYRWRG-Q----PLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~--------------~~~~~~~~-~----~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
+++...++... ..+++.++. ...+.+.+ . .+.++++|.||++|+++|++++..
T Consensus 216 -dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~-- 287 (448)
T PRK03803 216 -DDALTRPLVPD-----NQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEA-- 287 (448)
T ss_pred -CCHHHHHHhhc-----CCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHH--
Confidence 55544443221 122222210 00011111 1 256889999999999999998876
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
+|++ +.+.
T Consensus 288 -----------------------------------------------------------------------lgi~~~~i~ 296 (448)
T PRK03803 288 -----------------------------------------------------------------------AGLPKEAML 296 (448)
T ss_pred -----------------------------------------------------------------------cCCCHHHHH
Confidence 4566 6799
Q ss_pred HHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec-CCCCChhhh
Q psy15432 1021 RGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV-TGERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~-~~drD~~~l 1096 (1255)
+||++|. ||||||++.. +++.||.| +||||+|+.++++.+.... .+++++|+|+ ..++|.+.+
T Consensus 297 ~~L~~f~g~~~R~e~v~~~~gv~~idDs~atN~~a~~~al~~l~~~~-------------~~~iilI~Gg~~k~~d~~~l 363 (448)
T PRK03803 297 EVLRTFTGLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAHI-------------QGKLVLIAGGDGKGADFSPL 363 (448)
T ss_pred HHHhhCCCCCCceEEEEEeCCeEEEEcCCcCCHHHHHHHHHhhhhcC-------------CCCEEEEECCCCCCCCHHHH
Confidence 9999998 9999999975 46677888 5999999999999986421 1368899996 477899988
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCccccc
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 1174 (1255)
...+ ...++.+++++.....-.... .......+..+.++.+..+.....+. .+.+..++.|++|.+-|+
T Consensus 364 ~~~l--~~~~~~vil~G~~~~~i~~~l-------~~~~~~~~~~~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~ 433 (448)
T PRK03803 364 REPV--AKYVRAVVLIGRDADKIAAAL-------GGAVPLVRVATLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFE 433 (448)
T ss_pred HHHH--HhhCCEEEEECCCHHHHHHHH-------hcCCCEEEeCCHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHH
Confidence 8877 334688888764433221111 00001223347778777776655554 456677999999984443
No 40
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-32 Score=333.50 Aligned_cols=305 Identities=13% Similarity=0.093 Sum_probs=210.8
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+.+||+.+|+++.+.++. |.|+...
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~~~~-------------------------- 159 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPVLDV-------------------------- 159 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHHHHh--------------------------
Confidence 69999999999999999999999999887776652 5553100
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
+..+.|++|+|+|+.+. +.+..+ +|+++|||||++||+++|| |+|+|+.+|++||+. .++|++.
T Consensus 160 ------------~~~~~~~~VlE~ss~ql-~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 160 ------------LDEPAELLAVELSSFQL-HWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred ------------ccCCCCEEEEECChHHh-Cccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 23578999999998853 444444 7999999999999999999 999999999999984 7888887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC----c-----cc-ee--cc-C----CccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS----I-----LN-YR--WR-G----QPLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~----~-----~~-~~--~~-~----~~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
+++.. ..+.+.+.......+.... . .. +. +. . ..+.++++|.||++|+++|++++..
T Consensus 224 -dd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~---- 297 (488)
T PRK03369 224 -DDSRA-AALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARA---- 297 (488)
T ss_pred -CCHHH-HHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHH----
Confidence 44444 3333333221111111010 0 00 00 00 0 1256789999999999999998875
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +++.++
T Consensus 298 ---------------------------------------------------------------------lGi~~e~i~~~ 308 (488)
T PRK03369 298 ---------------------------------------------------------------------VGVPAGAIADA 308 (488)
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4566 679999
Q ss_pred HhcCCC-CCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEE-ecCCCCChhhhhh
Q psy15432 1023 IKACVW-PGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVF-NVTGERDPTKLLS 1098 (1255)
Q Consensus 1023 L~~~~~-pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVf-g~~~drD~~~ll~ 1098 (1255)
|++|+| |||||++... ++.||.| |||||+|++++++.+ .++++|| |+++++|.+.|++
T Consensus 309 L~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~------------------~~iilI~GG~~k~~d~~~l~~ 370 (488)
T PRK03369 309 LASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAY------------------PRVVWIAGGLLKGASVDALVA 370 (488)
T ss_pred HHhCCCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhC------------------CCeEEEecCcCCCCCHHHHHH
Confidence 999996 9999999764 5544545 899999999999744 1478999 8999999999999
Q ss_pred hhhcCCCCcEEEEcCCCCcccccccCCC-CCcccccc---------------cccc-c-----------CCHHHHHHHHH
Q psy15432 1099 PLLQSNQFEYILVTPNILTNEIRWRGQP-LDEDWKST---------------VQSI-N-----------ISLAIQLAYLW 1150 (1255)
Q Consensus 1099 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~-~~~~~~~d---------------~~~~-~-----------~~~~~~~~~~~ 1150 (1255)
.+ ....+.+++.++..........+- ....+..- .... . .+.++....++
T Consensus 371 ~l--~~~~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~ 448 (488)
T PRK03369 371 EM--ASRLVGAVLIGRDRAVVAEALSRHAPDVPVVQVVTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAAR 448 (488)
T ss_pred HH--hhheeEEEEEcCCHHHHHHHHHhcCCCCCEEEeccccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 88 334677777665433322221100 00000000 0000 0 03777888888
Q ss_pred HHcCC-CceEEeecCCCCCCccccc
Q psy15432 1151 MFRMN-KSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1151 ~~~~~-~~~~l~~~~~~~~~~~~~~ 1174 (1255)
....+ +.|.|..++.|++|.+-|+
T Consensus 449 ~~a~~gd~vLlSPacaSfd~f~~y~ 473 (488)
T PRK03369 449 RLARPGDTVLLAPAGASFDQFTGYG 473 (488)
T ss_pred HhCCCCCEEEeChhhcccccccCHH
Confidence 75555 5788899999999985443
No 41
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-32 Score=329.60 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=213.2
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+.+|.++.+.++- |.|+.... ..
T Consensus 110 ~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~~~------------~~---------- 155 (445)
T PRK04308 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLEAE------------LQ---------- 155 (445)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHHHH------------Hh----------
Confidence 479999999999999999999999999887555442 44432110 00
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
-..+++|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++
T Consensus 156 ------------~~~~~~d~~VlE~~~-~~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n 220 (445)
T PRK04308 156 ------------REGKKADVWVLELSS-FQLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLN 220 (445)
T ss_pred ------------hcCCCCcEEEEEeCh-HHhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEe
Confidence 013478999999996 567888888 6999999999999999999 9999999999999999899998
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEEcCCc--cc---------eeccCC----ccccCCCchhHHHHHHHHHHHHHHHHHhh
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLEAPSI--LN---------YRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWMFRM 944 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~~~~~--~~---------~~~~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~~ 944 (1255)
. +++.... +.+ .+++++.++.. .+ +.+.+. .+.++++|.||++|+++|++++..
T Consensus 221 ~-dd~~~~~-~~~----~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~----- 289 (445)
T PRK04308 221 A-DDAFCRA-MKR----AGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEA----- 289 (445)
T ss_pred C-CcHHHHH-Hhh----cCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHH-----
Confidence 7 4433222 221 23444444310 01 111111 256899999999999999998875
Q ss_pred cchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHH
Q psy15432 945 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGI 1023 (1255)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL 1023 (1255)
+|++ +++.+||
T Consensus 290 --------------------------------------------------------------------lgi~~~~i~~~L 301 (445)
T PRK04308 290 --------------------------------------------------------------------VGLPREALLEHV 301 (445)
T ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Confidence 4566 6799999
Q ss_pred hcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecC-CCCChhhhhhh
Q psy15432 1024 KACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVT-GERDPTKLLSP 1099 (1255)
Q Consensus 1024 ~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~-~drD~~~ll~~ 1099 (1255)
++++ ||||||++... +.+||.| ++|||+|+.++++.+. .++++|||.+ .++|++.++..
T Consensus 302 ~~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~-----------------~~~i~IlGg~~~~~~~~~~~~~ 364 (445)
T PRK04308 302 KTFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----------------NPLFVILGGMGKGQDFTPLRDA 364 (445)
T ss_pred hhCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC-----------------CCEEEEeCCCCCCCCHHHHHHH
Confidence 9998 99999999764 5555555 3899999999988662 2578999744 78899888776
Q ss_pred hhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCc-eEEeecCCCCCCccccc
Q psy15432 1100 LLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKS-AELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1100 L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 1174 (1255)
+ ...+|.+++++........... . .+....+..+.++.++.+.....+.+ +.+..++.|++|-+-|+
T Consensus 365 l--~~~~~~vil~G~~~~~l~~~l~----~--~~~~~~~~~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~ 432 (445)
T PRK04308 365 L--AGKAKGVFLIGVDAPQIRRDLD----G--CGLNLTDCATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYA 432 (445)
T ss_pred H--HHhCcEEEEECCCHHHHHHHHH----h--cCCCeEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHH
Confidence 6 3346888887754322111100 0 01112234577787777766655555 45556999999985443
No 42
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-32 Score=328.21 Aligned_cols=298 Identities=14% Similarity=0.143 Sum_probs=212.7
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+..|++++..++. |.|..
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------g~p~~--------------------------- 145 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNI------------GLPAL--------------------------- 145 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCc------------chhHH---------------------------
Confidence 369999999999999999999999999988765442 33310
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
.....+.|++|+|+|+.+ ++.++.+ +|+++|||||+.||+++||+|+|+|+.+|++|++...++|++
T Consensus 146 -----------~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~n 212 (438)
T PRK03806 146 -----------SLLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 212 (438)
T ss_pred -----------HhhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEEe
Confidence 013456799999999875 4678888 699999999999999999779999999999999988889988
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEEcCC-ccc----------eec-cCC----ccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLEAPS-ILN----------YRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~~~~-~~~----------~~~-~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
. +++.+.. +.+. ..++..++. ... +.. .+. .++++++|.||+.|+++|++++..
T Consensus 213 ~-dd~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~---- 282 (438)
T PRK03806 213 A-DDALTMP-IRGA----DKRCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADA---- 282 (438)
T ss_pred C-CCHHHHH-HhcC----CceEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHH----
Confidence 7 5554443 2221 122222210 000 111 111 346889999999999999998875
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +++.++
T Consensus 283 ---------------------------------------------------------------------lgi~~~~i~~~ 293 (438)
T PRK03806 283 ---------------------------------------------------------------------VGIPRASSLKA 293 (438)
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4566 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecC-CCCChhhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVT-GERDPTKLLS 1098 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~-~drD~~~ll~ 1098 (1255)
|++|+ ||||||++.. ++..+|+| |||||+|++++++.++. .+++++|||++ .+.|++.+.+
T Consensus 294 L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~---------------~~~~i~IlG~~~k~~d~~~l~~ 358 (438)
T PRK03806 294 LTTFTGLPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHV---------------DGTLHLLLGGDGKSADFSPLAR 358 (438)
T ss_pred HHhCCCCCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCcc---------------CCcEEEEECCcCCCCCHHHHHH
Confidence 99998 9999999975 46677777 89999999999998752 13689999987 5568888777
Q ss_pred hhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCccccc
Q psy15432 1099 PLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1099 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 1174 (1255)
.+ ..... .+++++.....-... +. .......+.++.++.+.....+. .+.+..++.|++|-+-|+
T Consensus 359 ~l-~~~~~-~v~~~g~~~~~l~~~--------~~-~~~~~~~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~ 424 (438)
T PRK03806 359 YL-NGDNI-RLYCFGRDGAQLAAL--------RP-EVSQLTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFE 424 (438)
T ss_pred HH-HhhCc-EEEEECCCHHHHHHH--------hh-cceEecCCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHH
Confidence 77 33333 566665432211111 10 11223456788777776554454 566666999999985544
No 43
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.8e-32 Score=329.48 Aligned_cols=248 Identities=17% Similarity=0.154 Sum_probs=179.3
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||++|+++||+.+|+++.+-++- |.|+..
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gni------------g~~~~~------------------------- 155 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNI------------GTAVLT------------------------- 155 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCcc------------chhhhh-------------------------
Confidence 4589999999999999999999999999887543321 222210
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCC--cee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN--CIA 264 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g--~~~ 264 (1255)
+ ....+.|++|+|+|+.+ +|.||++ +|+++|||||+.||+++|| |+|+|+.+|++||++. .++
T Consensus 156 --------~----~~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 156 --------L----EPPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred --------c----ccCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 0 01236799999999986 6999998 6999999999999999999 8999999999999987 788
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc----c--------eeeecCc------cc--ccCCCchhHHhhHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI----L--------NYRWRGQ------PL--DEDWKSTVQSINISLAIQL 324 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~----~--------~~~~~~~------~i--~l~l~G~~q~~Na~lAia~ 324 (1255)
|++. +++.+..+ .+.+...+++++.++.. . .+..... .+ .+++.|.||++|+++|+++
T Consensus 221 V~n~-dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa 298 (460)
T PRK01390 221 VIGV-DDAYCRAI-ADRLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAA 298 (460)
T ss_pred EEeC-CCHHHHHH-HHhccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHH
Confidence 8887 56555544 33333334444333211 0 0111110 11 1478999999999999998
Q ss_pred HHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCh
Q psy15432 325 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404 (1255)
Q Consensus 325 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 404 (1255)
+..+ +++ +
T Consensus 299 ~~~l-----------------------------------------------------------------------gi~-~ 306 (460)
T PRK01390 299 ARAL-----------------------------------------------------------------------GLS-P 306 (460)
T ss_pred HHHc-----------------------------------------------------------------------CCC-H
Confidence 8764 566 8
Q ss_pred HHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEE
Q psy15432 405 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRI 481 (1255)
Q Consensus 405 e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 481 (1255)
+.+.+||++++ ||||||++.. ++..||+| |||||+|++++++.++ +++
T Consensus 307 ~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~~-----------------------------~i~ 357 (460)
T PRK01390 307 EEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSFD-----------------------------RIY 357 (460)
T ss_pred HHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhCC-----------------------------CeE
Confidence 99999999996 9999999986 56677889 9999999998776431 578
Q ss_pred EEEecCCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 482 LVFNVTGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 482 lVfg~~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+|+|...+++.-+.|..+ . ..++.++++
T Consensus 358 ~I~G~~d~~~~~~~L~~~-~-~~v~~v~~~ 385 (460)
T PRK01390 358 WIAGGKPKEGGIESLAPF-F-PRIAKAYLI 385 (460)
T ss_pred EEecCccCCCCHHHHHHH-H-HhhCEEEEE
Confidence 899854433434444443 1 345666664
No 44
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-31 Score=319.32 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=186.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||+++|+++.+-++- |.|.
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggni------------g~p~----------------------------- 147 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNI------------GTPA----------------------------- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCc------------CHHH-----------------------------
Confidence 79999999999999999999999999976654431 1111
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
+.. ...+.|++|+|+|+.. +|.|+.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++.
T Consensus 148 ---~~~------~~~~~~~~V~E~ss~~-l~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~n~ 215 (448)
T PRK03803 148 ---LDL------LSDDPELYVLELSSFQ-LETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVFNR 215 (448)
T ss_pred ---HHH------hcCCCCEEEEEcChhh-hCcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEEeC
Confidence 001 2235799999999875 3788888 6999999999999999999 89999999999999888888877
Q ss_pred CCCchHHHHHHHhhhccCceEEEcC------------CcceeeecCc-----ccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAP------------SILNYRWRGQ-----PLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~------------~~~~~~~~~~-----~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
+++....+.... ..+..+... ....+.+.+. .+.++++|.||++|+++|++++..+
T Consensus 216 -dd~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l--- 288 (448)
T PRK03803 216 -DDALTRPLVPDN---QPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA--- 288 (448)
T ss_pred -CCHHHHHHhhcC---CcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc---
Confidence 555554433211 111112111 0001111111 2568899999999999999988765
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ ++.|.++|
T Consensus 289 --------------------------------------------------------------------gi~-~~~i~~~L 299 (448)
T PRK03803 289 --------------------------------------------------------------------GLP-KEAMLEVL 299 (448)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 567 89999999
Q ss_pred hcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec-C
Q psy15432 412 KACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV-T 487 (1255)
Q Consensus 412 ~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~-~ 487 (1255)
++|. ||||||++.. +++.||+| +||||+|+.++++.+..... .++++|+|. .
T Consensus 300 ~~f~g~~~R~e~v~~~~gv~~idDs~atN~~a~~~al~~l~~~~~------------------------~~iilI~Gg~~ 355 (448)
T PRK03803 300 RTFTGLPHRCEWVREVAGVDYYNDSKGTNVGATVAAIEGLGAHIQ------------------------GKLVLIAGGDG 355 (448)
T ss_pred hhCCCCCCceEEEEEeCCeEEEEcCCcCCHHHHHHHHHhhhhcCC------------------------CCEEEEECCCC
Confidence 9998 9999999975 46778888 59999999999998854211 168999996 4
Q ss_pred CCCChhhhhHHhhccCCCcEEEEc
Q psy15432 488 GERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 488 ~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
.++|+..+...+ ...++.++++
T Consensus 356 k~~d~~~l~~~l--~~~~~~vil~ 377 (448)
T PRK03803 356 KGADFSPLREPV--AKYVRAVVLI 377 (448)
T ss_pred CCCCHHHHHHHH--HhhCCEEEEE
Confidence 778999887777 3447778775
No 45
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.7e-32 Score=322.79 Aligned_cols=252 Identities=19% Similarity=0.180 Sum_probs=188.9
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||++|+.+||+.+|++++..++ | |.|++...
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gn---------i---G~~~~~~~----------------------- 152 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGN---------I---GYAACELA----------------------- 152 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecc---------c---ChhHHHHH-----------------------
Confidence 347999999999999999999999999988765332 1 33322100
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~ 266 (1255)
.+.. ....+.|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|+
T Consensus 153 ----~~~~-----~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vl 220 (459)
T PRK02705 153 ----LLRS-----GKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRIL 220 (459)
T ss_pred ----hhhh-----ccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEE
Confidence 0000 134578999999999 578888876 7999999999999999999 999999999999999988888
Q ss_pred ccCCCchHHHHHHHhhhccCceEEEcCCc------c--ee-----ee-cCc----ccccCCCchhHHhhHHHHHHHHHHH
Q psy15432 267 SANQRGPCKQILLETSRALNCVLLEAPSI------L--NY-----RW-RGQ----PLDEDWKSTVQSINISLAIQLAYLW 328 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~~~l~~~~~~------~--~~-----~~-~~~----~i~l~l~G~~q~~Na~lAia~a~~~ 328 (1255)
+. +++++..+..+.. ....+..... . .+ .+ .+. ...++++|.||..|+++|++++..+
T Consensus 221 n~-dd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l 296 (459)
T PRK02705 221 NG-DDPYLRQHRSSWP---KGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLA 296 (459)
T ss_pred EC-CCHHHHHHHhcCC---ceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHc
Confidence 87 6665555433211 1111211100 0 00 01 011 1357899999999999999988764
Q ss_pred HHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHH
Q psy15432 329 MFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTY 408 (1255)
Q Consensus 329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~ 408 (1255)
+++ ++.+.
T Consensus 297 -----------------------------------------------------------------------gv~-~~~i~ 304 (459)
T PRK02705 297 -----------------------------------------------------------------------GLS-AEAIA 304 (459)
T ss_pred -----------------------------------------------------------------------CCC-HHHHH
Confidence 567 89999
Q ss_pred HHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEe
Q psy15432 409 RGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFN 485 (1255)
Q Consensus 409 ~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg 485 (1255)
++|++|. ||||||++.. +++.||+| |||||+|+.++++++. . ++++|+|
T Consensus 305 ~~L~~f~~~~gR~e~~~~~~~~~ii~Ds~a~N~~s~~~al~~l~-----~-----------------------~~i~IlG 356 (459)
T PRK02705 305 EALRSFPGVPHRLERIGTINGIDFINDSKATNYDAAEVGLKAVP-----G-----------------------PVILIAG 356 (459)
T ss_pred HHHHhCCCCCCceEEEEeeCCcEEEEeCCCCCHHHHHHHHHhCC-----C-----------------------CeEEEec
Confidence 9999997 9999999875 46789999 7999999999998762 1 5788887
Q ss_pred -cCCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 486 -VTGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 486 -~~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+..++|...+++.+ . ...|.+|++
T Consensus 357 g~~~~~d~~~~~~~l-~-~~~~~vi~~ 381 (459)
T PRK02705 357 GEAKQGDDSAWLKQI-K-AKAAAVLLF 381 (459)
T ss_pred CccCCCCHHHHHHHH-H-hheeEEEEE
Confidence 56689999999888 3 457888887
No 46
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.7e-32 Score=326.66 Aligned_cols=291 Identities=15% Similarity=0.098 Sum_probs=205.6
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+.+||+..|+++++.++- |.|+.... .
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~~~------------~----------- 152 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLIDAV------------E----------- 152 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHHHH------------h-----------
Confidence 489999999999999999999999999877654442 33322100 0
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCC---ceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN---CIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g---~~a 876 (1255)
.....|++|+|+|+.+.-. ..++ +|+++|||||+.||+++|| |+|+|+.+|++||++. ..+
T Consensus 153 -------------~~~~~~~~v~E~~~~~~~~-~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 153 -------------EYGEDDIIVAEVSSFQLET-IKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred -------------cCCCCCEEEEEcChhhhcc-cccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 1125799999999874322 2334 6999999999999999999 9999999999999754 556
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------c--eeccCC------ccccCCCchhHHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL-----------N--YRWRGQ------PLDEDWKSTVQSINISLAIQLA 937 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~-----------~--~~~~~~------~v~l~L~G~hq~~Na~lAiala 937 (1255)
+++. ++ +. +...+.+.+++++.++... . +...+. .+.++++|.||.+|+++|++++
T Consensus 217 vln~-d~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~ 291 (450)
T PRK14106 217 VLNY-DD-PR---TRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAA 291 (450)
T ss_pred EEeC-Cc-HH---HHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHH
Confidence 7776 33 33 3333444455555544210 0 111111 1367899999999999999988
Q ss_pred HHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-
Q psy15432 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID- 1016 (1255)
Q Consensus 938 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~- 1016 (1255)
.. +|++
T Consensus 292 ~~-------------------------------------------------------------------------lgi~~ 298 (450)
T PRK14106 292 YL-------------------------------------------------------------------------LGISP 298 (450)
T ss_pred HH-------------------------------------------------------------------------cCCCH
Confidence 75 4566
Q ss_pred HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec-CCCCC
Q psy15432 1017 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV-TGERD 1092 (1255)
Q Consensus 1017 ~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~-~~drD 1092 (1255)
+++.+||+++. ||||||++.. ++..+|+| |||||+|+++++++++ .++++|||. ..+++
T Consensus 299 ~~i~~~L~~~~~~~gR~e~i~~~~~~~vi~D~~ahNP~s~~~~l~~l~-----------------~~~i~v~g~~~~~k~ 361 (450)
T PRK14106 299 DVIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAYE-----------------TPIVLIAGGYDKGSD 361 (450)
T ss_pred HHHHHHHHhCCCCCcceEEEeeECCEEEEeCCCccCHHHHHHHHHhCC-----------------CCeEEEeCCcCCCCC
Confidence 67999999998 9999999874 45678999 7999999999988762 246788874 47789
Q ss_pred hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc--cccccCCHHHHHHHHHHHcCCCceEEeecCC
Q psy15432 1093 PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST--VQSINISLAIQLAYLWMFRMNKSAELKRNQS 1165 (1255)
Q Consensus 1093 ~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1165 (1255)
.+.++..+ . ..+|.+++++..+....... .... ...+..+.++.++.+.....++.++|++|..
T Consensus 362 ~~~~~~~l-~-~~~~~vi~~g~~~~~l~~~~-------~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~~ 427 (450)
T PRK14106 362 FDEFAKAF-K-EKVKKLILLGETAQEIAEAA-------RKYGFDNILFAETLEEAVKKAYEIAKPGDVVLLSPAC 427 (450)
T ss_pred HHHHHHHH-H-hhCCEEEEEcCCHHHHHHHH-------hhCCCCcEEEeCCHHHHHHHHHHhCCCCCEEEEChhh
Confidence 99998888 3 34788888754322111100 0000 1223457888888887777778899999963
No 47
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-31 Score=322.37 Aligned_cols=325 Identities=13% Similarity=0.031 Sum_probs=218.3
Q ss_pred cchHHHHHHHHHhc-CcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhh
Q psy15432 698 VQVDQVVQYLGHLN-ITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKF 776 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg-~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f 776 (1255)
+.+.++..++..+- .+. ...++|+||||||||||++|+.+||+.+|.++.+.++. |.|+....
T Consensus 95 ~i~~~~el~~~~~~~~~~---~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~~~~- 158 (468)
T PRK04690 95 PFIGGTALWFAEHAARDG---VVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLLEVL- 158 (468)
T ss_pred cEEEHHHHHHHHHhhccC---CCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchHHHh-
Confidence 34556666554432 111 12379999999999999999999999999887666553 55542100
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC
Q psy15432 777 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG 856 (1255)
Q Consensus 777 ~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG 856 (1255)
. ...+.|++|+|+++...-+..-...+|+++|||||+.||+++||
T Consensus 159 -----------~------------------------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g 203 (468)
T PRK04690 159 -----------A------------------------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG 203 (468)
T ss_pred -----------c------------------------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC
Confidence 0 12357999999999844333221137999999999999999999
Q ss_pred CCHHHHHHHHhccccCC--ceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc------cceeccC-----CccccCCCc
Q psy15432 857 NTIEEITMQKAGIMKPN--CIAVTSANQRGPCKQILLETSRALNCVLLEAPSI------LNYRWRG-----QPLDEDWKS 923 (1255)
Q Consensus 857 ~TleeIA~~KagI~K~g--~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~------~~~~~~~-----~~v~l~L~G 923 (1255)
++++|+.+|++||+.. ..+|++. +++.. ..+. ....+++.++.. ..+.+.+ ..+.++++|
T Consensus 204 -s~e~y~~aK~~i~~~~~~~~~v~n~-dd~~~-~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 276 (468)
T PRK04690 204 -GEARYYRDKLSLVTEGRPRIALLNA-ADPRL-AALQ----LPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPG 276 (468)
T ss_pred -CHHHHHHHHHHHHhCCCCCeEEEeC-ccHHH-HHHh----cCCCeEEEeeCCccceecceEEEcCCceEEeeccccCcc
Confidence 9999999999999754 4567776 44332 2221 122344443211 0111111 124678999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccc
Q psy15432 924 TVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGN 1003 (1255)
Q Consensus 924 ~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 1003 (1255)
.||..|+++|++++..
T Consensus 277 ~h~~~Na~~A~a~~~~---------------------------------------------------------------- 292 (468)
T PRK04690 277 RHNRGNLCAVLAALEA---------------------------------------------------------------- 292 (468)
T ss_pred HhhHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 9999999999998875
Q ss_pred cccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCC
Q psy15432 1004 QSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVI 1079 (1255)
Q Consensus 1004 ~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~ 1079 (1255)
++++ +.+.+||+++. ||||||++... +..||.| +||||+|++++++.+.. +
T Consensus 293 ---------lgi~~~~i~~~l~~~~~~~gR~e~~~~~~g~~iidDs~ahNp~a~~~al~~~~~----------------~ 347 (468)
T PRK04690 293 ---------LGLDAVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTTPHASLAALDCFAG----------------R 347 (468)
T ss_pred ---------cCCCHHHHHHHHHhCCCCCCCcEEEEccCCeEEEEeCCCCCHHHHHHHHHhccC----------------C
Confidence 3455 66999999997 99999999864 6666777 59999999998876521 3
Q ss_pred cEEEEEec-CCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCCHHHHHHHHHH--HcC
Q psy15432 1080 QRILVFNV-TGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINISLAIQLAYLWM--FRM 1154 (1255)
Q Consensus 1080 ~~vlVfg~-~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~--~~~ 1154 (1255)
++++|||. ..++|.+.|++.+ .+...+.+++++.......... ...... .......+.++.++.+.. ...
T Consensus 348 ~i~~i~Gg~~k~kd~~~l~~~l-~~~~~~~v~~~g~~~~r~~~~l----~~~~~~~~~~~~~~~~~~~Av~~A~~~~~~~ 422 (468)
T PRK04690 348 RVALLVGGHDRGLDWTDFAAHM-AQRAPLEIVTMGANGPRIHALL----APLAAAGRFGLHAADDLAHAVRLARTALGAQ 422 (468)
T ss_pred cEEEEEcCCCCCCCHHHHHHHH-HhccCeEEEEeCCCHHHHHHHH----HhcccccCCceEEcCCHHHHHHHHHHHhCCC
Confidence 68899996 5888999999999 4432366776664433322111 000000 011223478888887765 233
Q ss_pred CCceEEeecCCCCCCccccc
Q psy15432 1155 NKSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1155 ~~~~~l~~~~~~~~~~~~~~ 1174 (1255)
.+.+.|.+++.|++|.+-|+
T Consensus 423 gdvVLlSPa~aSfD~f~~y~ 442 (468)
T PRK04690 423 GGVVLLSPGAPSFGAYRDYV 442 (468)
T ss_pred CCEEEeCccccccccccCHH
Confidence 46788999999999984443
No 48
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=1.6e-31 Score=318.80 Aligned_cols=298 Identities=17% Similarity=0.175 Sum_probs=209.5
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+.+|+++.+-++. |.|..
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni------------g~~~~--------------------------- 142 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI------------GTPAL--------------------------- 142 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc------------CHHHH---------------------------
Confidence 379999999999999999999999999886544321 22200
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~a 876 (1255)
.++ ...+.|++|+|+|.. .++.++.+ +|+++|||||+.||++++| |+|+|+.+|++|++. ++.+
T Consensus 143 -----~~~-----~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~~ 209 (433)
T TIGR01087 143 -----EVL-----DQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVA 209 (433)
T ss_pred -----HHH-----hccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 000 114689999999965 45677777 7999999999999999999 999999999999974 4588
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc----cee-------ccCCccccCCCchhHHHHHHHHHHHHHHHHHhhc
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL----NYR-------WRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN 945 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~----~~~-------~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~ 945 (1255)
|++. + ++... ..+...+++++.++... .+. +....+.++++|.||+.|+++|++++..
T Consensus 210 i~n~-d-d~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~------ 278 (433)
T TIGR01087 210 VLNA-D-DPRFA---RLAQKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKS------ 278 (433)
T ss_pred EEEC-C-CHHHH---HhhhhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHH------
Confidence 8887 4 33322 22233345555553211 111 1111367899999999999999998875
Q ss_pred chhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHh
Q psy15432 946 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIK 1024 (1255)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~ 1024 (1255)
+|++ +.+.+||+
T Consensus 279 -------------------------------------------------------------------lgi~~~~i~~~L~ 291 (433)
T TIGR01087 279 -------------------------------------------------------------------LGLNLEAILEALR 291 (433)
T ss_pred -------------------------------------------------------------------cCCCHHHHHHHHH
Confidence 4566 67999999
Q ss_pred cCC-CCCcEEEEee-cCcEEEEEc-CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCChhhhhhhh
Q psy15432 1025 ACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERDPTKLLSPL 1100 (1255)
Q Consensus 1025 ~~~-~pGR~E~v~~-~~~~vilDg-AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L 1100 (1255)
+|. ||||||++.. +++++|+|+ ||||+|+.++++.+. .++++||| ...++|.+.+.+.+
T Consensus 292 ~f~g~~~R~e~v~~~~g~~~idD~~atn~~a~~~al~~~~-----------------~~ii~I~Gg~~~~~d~~~~~~~l 354 (433)
T TIGR01087 292 SFKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFD-----------------NPVILIVGGDDKGADFSPLAPAA 354 (433)
T ss_pred hCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC-----------------CCEEEEEcCCCCCCCHHHHHHHH
Confidence 998 9999999975 567899995 999999999998762 24788886 55678888888877
Q ss_pred hcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCCHHHHHHHHHHHcCCCc-eEEeecCCCCCCccccc
Q psy15432 1101 LQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKS-AELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1101 ~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ 1174 (1255)
. ...+.+++.+......... ... ....+..+.++.+..+.....+.+ +.+..++.|++|.+-|+
T Consensus 355 -~-~~~~~v~~~G~~~~~l~~~--------~~~~~~~~~~~~~~~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~ 421 (433)
T TIGR01087 355 -A-GKVKAVLAIGEDAAKIAPL--------LKEAGLSVYLVESLEEAVQAAREVASPGDVVLLSPACASFDQFKSYE 421 (433)
T ss_pred -H-hhCCEEEEECCCHHHHHHH--------HHhCCCcEEEeCCHHHHHHHHHHhcCCCCEEEECccchhhccccCHH
Confidence 3 3356777765433221111 100 011233477887777766555555 45556779999985544
No 49
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3e-31 Score=319.06 Aligned_cols=302 Identities=15% Similarity=0.110 Sum_probs=207.8
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+.+||+.+|++...+.. |..-.... +
T Consensus 108 ~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~g-------------g~~~~~~~----------------------~-- 150 (461)
T PRK00421 108 TSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIG-------------GILNAAGT----------------------N-- 150 (461)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEEC-------------ceeccCCc----------------------c--
Confidence 7999999999999999999999999975333211 21100000 0
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~av 877 (1255)
+...+.|++|+|+++... ....+ +|+++|||||+.||+++|| |+|+|+..|..|+ +++..+|
T Consensus 151 -----------~~~~~~~~~V~E~ss~q~-~~~~~--~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~V 215 (461)
T PRK00421 151 -----------ARLGNSDYFVAEADESDR-SFLKL--HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 215 (461)
T ss_pred -----------cccCCCCEEEEECCCccc-hHhhc--CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 011357999999997733 11222 7999999999999999999 9999998877665 5667888
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCC--c--------------cceec--cCC---ccccCCCchhHHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPS--I--------------LNYRW--RGQ---PLDEDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~--~--------------~~~~~--~~~---~v~l~L~G~hq~~Na~lAial 936 (1255)
++. +++....+..+. .++++.++. . ..+.+ .+. .+.++++|.||.+|+++|+++
T Consensus 216 ~n~-dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~ 290 (461)
T PRK00421 216 ACG-DDPELRELLPRV----SRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAV 290 (461)
T ss_pred EEC-CCHHHHHHHHhc----CCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 887 555554443321 133333321 0 00110 011 256789999999999999998
Q ss_pred HHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC
Q psy15432 937 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 1016 (1255)
Q Consensus 937 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~ 1016 (1255)
+.. ++++
T Consensus 291 ~~~-------------------------------------------------------------------------lgv~ 297 (461)
T PRK00421 291 ALE-------------------------------------------------------------------------LGID 297 (461)
T ss_pred HHH-------------------------------------------------------------------------cCCC
Confidence 875 4566
Q ss_pred -HHHHHHHhcCC-CCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe---cCCC
Q psy15432 1017 -PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN---VTGE 1090 (1255)
Q Consensus 1017 -~~i~~gL~~~~-~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg---~~~d 1090 (1255)
+++.+||++|+ ||||||++... ++.||+||||||++++++++.++.... .+++++||| .+++
T Consensus 298 ~~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D~aHnp~~~~a~~~al~~~~~------------~~~i~~v~gp~~~~r~ 365 (461)
T PRK00421 298 DEAIREALATFKGVKRRFEEKGEVGGVVLIDDYAHHPTEIKATLKAARQGYP------------DKRIVAVFQPHRYSRT 365 (461)
T ss_pred HHHHHHHHHhCCCCCcccEEEEecCCcEEEEeCCCCHHHHHHHHHHHHhhCC------------CCeEEEEECCCCCccH
Confidence 67999999997 99999999865 678999999999999999999987431 146789998 6777
Q ss_pred CChhh-hhhhhhcCCCCcEEEEcCCCCcccccccCCCC---Ccccccc--cccccCCHHHHHHHHHHHcCCCceEEeecC
Q psy15432 1091 RDPTK-LLSPLLQSNQFEYILVTPNILTNEIRWRGQPL---DEDWKST--VQSINISLAIQLAYLWMFRMNKSAELKRNQ 1164 (1255)
Q Consensus 1091 rD~~~-ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~---~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1164 (1255)
||... |.+.+ ..+|.+++++..+..+....+.+. ...+... ......+.++.++.+.....+.+++|+-|.
T Consensus 366 kd~~~~~~~~l---~~~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~a~~gD~vlv~G~ 442 (461)
T PRK00421 366 RDLLDEFAEAL---SDADEVILLDIYAAGEEPIGGVDSEDLARKIKRGHRDPIFVPDLEDLAELLAEVLKPGDLVLTMGA 442 (461)
T ss_pred HHHHHHHHHHH---HHCCEEEEcCccCCCCCCCCCCCHHHHHHHHhccCCceEEeCCHHHHHHHHHHhcCCCCEEEEECC
Confidence 77554 55544 347899998776644432221111 1112111 112345788888888888888899999888
Q ss_pred CCC
Q psy15432 1165 SSL 1167 (1255)
Q Consensus 1165 ~~~ 1167 (1255)
+++
T Consensus 443 g~~ 445 (461)
T PRK00421 443 GDI 445 (461)
T ss_pred CCH
Confidence 763
No 50
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=3e-31 Score=317.38 Aligned_cols=297 Identities=15% Similarity=0.115 Sum_probs=208.7
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+.+||+.+|+++.+.++. |.|++... .
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~~~------------~----------- 152 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASEVA------------Q----------- 152 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHHHH------------h-----------
Confidence 379999999999999999999999999877555432 44543100 0
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCC---ceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN---CIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g---~~a 876 (1255)
...+.|++|+|+++.+.. .++.+ +|+++|||||+.||+++|| |+|+|+.+|++|+++. ..+
T Consensus 153 -------------~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~~ 216 (447)
T PRK02472 153 -------------KATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDYL 216 (447)
T ss_pred -------------cCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 123569999999988654 35566 7999999999999999999 9999999999999864 458
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------ceeccCC----ccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL-----------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~-----------~~~~~~~----~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
|++. +++...+. +.+..++++.++... .+.+.+. .+.++++|.||++|+++|++++..
T Consensus 217 v~n~-dd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~-- 289 (447)
T PRK02472 217 VINF-DQEEVKEL----AKQTKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKL-- 289 (447)
T ss_pred EEeC-CcHHHHHH----HhhcCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHH--
Confidence 8887 44444332 222223333332100 0111111 126789999999999999998875
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
+|++ +++.
T Consensus 290 -----------------------------------------------------------------------lgi~~~~i~ 298 (447)
T PRK02472 290 -----------------------------------------------------------------------LGVSNEAIR 298 (447)
T ss_pred -----------------------------------------------------------------------cCCCHHHHH
Confidence 4566 6799
Q ss_pred HHHhcCC-CCCcEEEEee-cCcEEEEEc-CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhh
Q psy15432 1021 RGIKACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~-~pGR~E~v~~-~~~~vilDg-AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~l 1096 (1255)
++|+++. ||||||++.. ++..||+|+ ||||+|+..+++.+. +++++|||... +++++.+
T Consensus 299 ~~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~~-----------------~~ii~I~g~~~~~~~~~~l 361 (447)
T PRK02472 299 EVLSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGFN-----------------QPVVLLAGGLDRGNEFDEL 361 (447)
T ss_pred HHHHhCCCCCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhCC-----------------CCEEEEECCCCCCCCHHHH
Confidence 9999998 9999999974 467899995 999999988887541 35789999764 7899999
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEee-cCCCCCCcc
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKR-NQSSLPMGP 1171 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 1171 (1255)
++.+ .. +|.+++.+........... . .+....+..+.++.+..+.....+++++|+. ++.|++|-+
T Consensus 362 ~~~l-~~--~~~v~~~G~~~~~l~~~~~-----~-~~~~~~~~~~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~ 428 (447)
T PRK02472 362 VPYL-KN--VKAMVVFGETAEKLARAAE-----K-AGITVVEADNVEDAVPKAYELSEPGDVILLSPACASWDQYK 428 (447)
T ss_pred HHHH-hc--cCEEEEECCCHHHHHHHHH-----h-CCCceEEcCCHHHHHHHHHHhCCCCCEEEeCcccccccccc
Confidence 9888 33 7888887543322111100 0 0011234457888887776666665555554 668888873
No 51
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=5.5e-31 Score=315.37 Aligned_cols=248 Identities=15% Similarity=0.177 Sum_probs=183.5
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+.+||+.+|.++.+.++- |.|+.. .
T Consensus 110 ~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~-----~-------------------- 152 (445)
T PRK04308 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLE-----A-------------------- 152 (445)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHH-----H--------------------
Confidence 479999999999999999999999999886555431 222210 0
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeec
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~ 267 (1255)
+... ..+++|++|+|+|+ +++|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++..+|++
T Consensus 153 ----~~~~-----~~~~~d~~VlE~~~-~~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n 220 (445)
T PRK04308 153 ----ELQR-----EGKKADVWVLELSS-FQLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLN 220 (445)
T ss_pred ----HHhh-----cCCCCcEEEEEeCh-HHhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEe
Confidence 0000 13478999999996 567889887 6999999999999999999 9999999999999998888887
Q ss_pred cCCCchHHHHHHHhhhccCceEEEcC--Ccce---------eeecCc----ccccCCCchhHHhhHHHHHHHHHHHHHhh
Q psy15432 268 ANQRGPCKQILLETSRALNCVLLEAP--SILN---------YRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWMFRM 332 (1255)
Q Consensus 268 ~~q~~e~~~vl~~~a~~~~~~l~~~~--~~~~---------~~~~~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~~ 332 (1255)
. +++.... +.+ .+..++.++ ...+ +.+.+. .++++++|.||++|+++|++++..+
T Consensus 221 ~-dd~~~~~-~~~----~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l---- 290 (445)
T PRK04308 221 A-DDAFCRA-MKR----AGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV---- 290 (445)
T ss_pred C-CcHHHHH-Hhh----cCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----
Confidence 6 4443332 222 122222221 1011 111111 2568999999999999999988764
Q ss_pred ccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHh
Q psy15432 333 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIK 412 (1255)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~ 412 (1255)
+++ ++++.++|+
T Consensus 291 -------------------------------------------------------------------gi~-~~~i~~~L~ 302 (445)
T PRK04308 291 -------------------------------------------------------------------GLP-REALLEHVK 302 (445)
T ss_pred -------------------------------------------------------------------CCC-HHHHHHHHh
Confidence 566 899999999
Q ss_pred cCC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-C
Q psy15432 413 ACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-G 488 (1255)
Q Consensus 413 ~~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~ 488 (1255)
+|+ ||||||++.. ++..||.|+ +|||+|+.++++.+. . ++++|||.+ .
T Consensus 303 ~f~~~~~R~e~~~~~~~~~~iDDs~~~n~~s~~~al~~~~-----~-----------------------~~i~IlGg~~~ 354 (445)
T PRK04308 303 TFQGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----N-----------------------PLFVILGGMGK 354 (445)
T ss_pred hCCCCCCceEEEEeeCCeEEEEcCCCCCHHHHHHHHHhCC-----C-----------------------CEEEEeCCCCC
Confidence 998 9999999976 455666664 899999999887651 1 589999744 7
Q ss_pred CCChhhhhHHhhccCCCcEEEEcC
Q psy15432 489 ERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 489 drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++|+..+...+ ...+|.|+++.
T Consensus 355 ~~~~~~~~~~l--~~~~~~vil~G 376 (445)
T PRK04308 355 GQDFTPLRDAL--AGKAKGVFLIG 376 (445)
T ss_pred CCCHHHHHHHH--HHhCcEEEEEC
Confidence 88998887766 34578888764
No 52
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=1.4e-30 Score=316.23 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=193.1
Q ss_pred chHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~ 166 (1255)
.++.+.+.++.|+.+.+ +.++|+||||||||||++|+++||+.+|+++++.++- ....+..
T Consensus 103 ~~e~~~~~~~~l~~~~~---~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni----------------~~~~~~~ 163 (498)
T PRK02006 103 EIELFAQALAALGASGY---APKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNI----------------SPAALDK 163 (498)
T ss_pred HHHHHHHHHhhhccccC---CCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCC----------------CHHHHHH
Confidence 45556777778877653 3489999999999999999999999999998874321 1111000
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccC--CCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcC
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEK--PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG 244 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~--vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG 244 (1255)
+... ...+ .|++|+|+++.+. +.++.+ +|+++|||||+.||+++||
T Consensus 164 ------------------------~~~~------~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iaviTNI~~DHld~~g 211 (498)
T PRK02006 164 ------------------------LMEA------IDAGALPDVWVLELSSFQL-ETTHTL-APDAATVLNITQDHLDWHG 211 (498)
T ss_pred ------------------------HHHh------hccCCCCcEEEEEccHHHh-Cccccc-CCCEEEEcCCChhhhcccC
Confidence 0000 1222 4899999998754 556665 7999999999999999999
Q ss_pred CCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc-----------c--eeeec--C-------
Q psy15432 245 NTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI-----------L--NYRWR--G------- 302 (1255)
Q Consensus 245 ~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~-----------~--~~~~~--~------- 302 (1255)
|+|+|+.+|++|++++..+|++. +++.......+.+.. .+..+..... . .+.+. .
T Consensus 212 -s~e~y~~aK~~i~~~~~~~Vln~-dd~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (498)
T PRK02006 212 -SMAAYAAAKARIFGPRTVRVLNR-DDARVMAMAPPGGAA-DAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPA 288 (498)
T ss_pred -CHHHHHHHHHHHcCCCCEEEEeC-CCHHHHHHhhccCCc-cEEEEeCCCccccccceEEecCCeEEEEecCcccccccc
Confidence 89999999999999888888887 555554443322111 1112221100 0 00000 0
Q ss_pred --------------------c-ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCC
Q psy15432 303 --------------------Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQ 361 (1255)
Q Consensus 303 --------------------~-~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1255)
. .++++++|.||++|+++|++++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l--------------------------------- 335 (498)
T PRK02006 289 PSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI--------------------------------- 335 (498)
T ss_pred cccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc---------------------------------
Confidence 0 1357899999999999999988765
Q ss_pred CCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCH
Q psy15432 362 GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTT 438 (1255)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp 438 (1255)
+++ ++.+.++|++|+ ||||||++.. +++.||.| ++|||
T Consensus 336 --------------------------------------gi~-~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~ 376 (498)
T PRK02006 336 --------------------------------------GLP-AAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNV 376 (498)
T ss_pred --------------------------------------CCC-HHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCH
Confidence 667 899999999998 9999999974 56777778 48999
Q ss_pred HHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-CCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 439 DSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-GERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 439 ~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
+|+.++++.+. + ++++|+|.+ .++|...+.+.+ ....|.||++.
T Consensus 377 ~s~~~al~~~~-----~-----------------------~ii~IlGg~~~~~~~~~~~~~l--~~~~~~vi~~G 421 (498)
T PRK02006 377 GATVAALDGLA-----Q-----------------------RVVLIAGGDGKGQDFSPLAAPV--ARHARAVVLIG 421 (498)
T ss_pred HHHHHHHHhCC-----C-----------------------CEEEEEcCCCCCCCHHHHHHHH--HHhCCEEEEEc
Confidence 99998887651 1 688899876 377888877766 34578888863
No 53
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=6e-31 Score=319.37 Aligned_cols=321 Identities=14% Similarity=0.134 Sum_probs=220.4
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.++...+.++.++.+. ...++|+||||||||||++|+++||+.+|+++++.++. ....+.
T Consensus 103 ~~e~~~~~~~~l~~~~---~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni----------------~~~~~~- 162 (498)
T PRK02006 103 EIELFAQALAALGASG---YAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNI----------------SPAALD- 162 (498)
T ss_pred HHHHHHHHHhhhcccc---CCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCC----------------CHHHHH-
Confidence 4555666677777665 23489999999999999999999999999998874321 111100
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcC--CCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKE--KPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG 856 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~--~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG 856 (1255)
.+.+. ... ..|++|+|+++.+. +.++.+ +|+++|||||+.||+++||
T Consensus 163 -------~~~~~----------------------~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iaviTNI~~DHld~~g 211 (498)
T PRK02006 163 -------KLMEA----------------------IDAGALPDVWVLELSSFQL-ETTHTL-APDAATVLNITQDHLDWHG 211 (498)
T ss_pred -------HHHHh----------------------hccCCCCcEEEEEccHHHh-Cccccc-CCCEEEEcCCChhhhcccC
Confidence 00000 112 24899999998754 556666 6999999999999999999
Q ss_pred CCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc-------------c--ceecc--C-----
Q psy15432 857 NTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI-------------L--NYRWR--G----- 914 (1255)
Q Consensus 857 ~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-------------~--~~~~~--~----- 914 (1255)
|+|+|+.+|++||+++..+|++. +++....+..+.+. ..++.++.. . .+.+. .
T Consensus 212 -s~e~y~~aK~~i~~~~~~~Vln~-dd~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (498)
T PRK02006 212 -SMAAYAAAKARIFGPRTVRVLNR-DDARVMAMAPPGGA---ADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAAD 286 (498)
T ss_pred -CHHHHHHHHHHHcCCCCEEEEeC-CCHHHHHHhhccCC---ccEEEEeCCCccccccceEEecCCeEEEEecCcccccc
Confidence 89999999999999888999987 45444433322111 111121100 0 00000 0
Q ss_pred --------------------C---ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCC
Q psy15432 915 --------------------Q---PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPG 971 (1255)
Q Consensus 915 --------------------~---~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1255)
. .++++++|.||++|+++|++++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~-------------------------------- 334 (498)
T PRK02006 287 PAPSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARA-------------------------------- 334 (498)
T ss_pred cccccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHH--------------------------------
Confidence 0 135789999999999999998875
Q ss_pred CCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cC
Q psy15432 972 GQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GA 1047 (1255)
Q Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gA 1047 (1255)
+|++ +++.++|++|. ||||||++.. +++.+|.| ++
T Consensus 335 -----------------------------------------lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~ 373 (498)
T PRK02006 335 -----------------------------------------IGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKG 373 (498)
T ss_pred -----------------------------------------cCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCC
Confidence 4666 67999999998 9999999974 56667777 58
Q ss_pred cCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCC
Q psy15432 1048 HTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQP 1126 (1255)
Q Consensus 1048 HNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~ 1126 (1255)
|||+|+.++++.+. +++++|+|.++ +++...+++.+ ....|.||+++.....-......
T Consensus 374 tn~~s~~~al~~~~-----------------~~ii~IlGg~~~~~~~~~~~~~l--~~~~~~vi~~G~~~~~i~~~~~~- 433 (498)
T PRK02006 374 TNVGATVAALDGLA-----------------QRVVLIAGGDGKGQDFSPLAAPV--ARHARAVVLIGRDAPAIRAALAG- 433 (498)
T ss_pred CCHHHHHHHHHhCC-----------------CCEEEEEcCCCCCCCHHHHHHHH--HHhCCEEEEEcCCHHHHHHHHhh-
Confidence 99999999888651 35788998764 78888887777 33468898886443221111000
Q ss_pred CCcccccccccccCCHHHHHHHHHHHcCCCc-eEEeecCCCCCCcccc
Q psy15432 1127 LDEDWKSTVQSINISLAIQLAYLWMFRMNKS-AELKRNQSSLPMGPHF 1173 (1255)
Q Consensus 1127 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 1173 (1255)
.+....+..+.++.++.+.....+.+ +.+..++.|+.|-+-|
T Consensus 434 -----~~~~~~~~~~~~eAi~~a~~~~~~gd~VLlsp~~~S~d~f~~~ 476 (498)
T PRK02006 434 -----TGVPLVDAATLEEAVRAAAALAQPGDAVLLSPACASLDMFRNY 476 (498)
T ss_pred -----CCCceEecCCHHHHHHHHHHhcCCCCEEEEChhhcccccccCH
Confidence 01112234578888888877666654 4455699999998433
No 54
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=5.4e-31 Score=314.76 Aligned_cols=248 Identities=15% Similarity=0.211 Sum_probs=184.2
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||++|+.+||+.+|+++++.++. |.|.
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------g~p~---------------------------- 144 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNI------------GLPA---------------------------- 144 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCc------------chhH----------------------------
Confidence 369999999999999999999999999987765432 1111
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeec
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~ 267 (1255)
+. ..+.+.|++|+|+|+.+ +|.++.+ +|+++|||||+.||+|+||+|+|+|+.+|++|++...++|++
T Consensus 145 ----~~------~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~n 212 (438)
T PRK03806 145 ----LS------LLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 212 (438)
T ss_pred ----HH------hhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEEe
Confidence 00 13456799999999975 4678887 699999999999999999779999999999999988888888
Q ss_pred cCCCchHHHHHHHhhhccCceEEEcCCc---------ceeee-cCc----ccccCCCchhHHhhHHHHHHHHHHHHHhhc
Q psy15432 268 ANQRGPCKQILLETSRALNCVLLEAPSI---------LNYRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFRMN 333 (1255)
Q Consensus 268 ~~q~~e~~~vl~~~a~~~~~~l~~~~~~---------~~~~~-~~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~~~ 333 (1255)
. +++.+.. +.+... .+..+..... ..+.+ .+. .++++++|.||+.|+++|++++..+
T Consensus 213 ~-dd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----- 283 (438)
T PRK03806 213 A-DDALTMP-IRGADK--RCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV----- 283 (438)
T ss_pred C-CCHHHHH-HhcCCc--eEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc-----
Confidence 7 5555544 322211 1122221110 00111 111 3468999999999999999988765
Q ss_pred cchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhc
Q psy15432 334 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKA 413 (1255)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~ 413 (1255)
+++ ++++.++|++
T Consensus 284 ------------------------------------------------------------------gi~-~~~i~~~L~~ 296 (438)
T PRK03806 284 ------------------------------------------------------------------GIP-RASSLKALTT 296 (438)
T ss_pred ------------------------------------------------------------------CCC-HHHHHHHHHh
Confidence 567 8999999999
Q ss_pred CC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC-CC
Q psy15432 414 CV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT-GE 489 (1255)
Q Consensus 414 ~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~-~d 489 (1255)
|+ ||||||++.. +++.+|+| |||||+|++++++.++. . .++++|||++ .+
T Consensus 297 f~~~~gR~E~v~~~~~~~~i~Ds~a~n~~a~~~al~~l~~---~-----------------------~~~i~IlG~~~k~ 350 (438)
T PRK03806 297 FTGLPHRFQLVLEHNGVRWINDSKATNVGSTEAALNGLHV---D-----------------------GTLHLLLGGDGKS 350 (438)
T ss_pred CCCCCCeEEEEEeeCCEEEEEcCCCCCHHHHHHHHHhCcc---C-----------------------CcEEEEECCcCCC
Confidence 98 9999999975 46777877 89999999999988751 1 1689999986 55
Q ss_pred CChhhhhHHhhccCCCcEEEEc
Q psy15432 490 RDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 490 rD~~~ll~~L~~~~~~d~vi~t 511 (1255)
.|+..+.+.+ ..... .++++
T Consensus 351 ~d~~~l~~~l-~~~~~-~v~~~ 370 (438)
T PRK03806 351 ADFSPLARYL-NGDNI-RLYCF 370 (438)
T ss_pred CCHHHHHHHH-HhhCc-EEEEE
Confidence 6888877777 33323 55555
No 55
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=7.4e-31 Score=316.57 Aligned_cols=298 Identities=15% Similarity=0.115 Sum_probs=204.8
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+..|+++++.++. |.|++...
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~~l------------------------- 164 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSAAL------------------------- 164 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHHHH-------------------------
Confidence 69999999999999999999999999988766542 44443110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
-...++|++|+|+|+.+. +.+..+ +|+++|||||+.||++++| |+|+|+.+|+.||+. ..+|++.
T Consensus 165 -----------~~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 165 -----------VAQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred -----------hcCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 023568999999999875 334444 7999999999999999999 999999999999975 4677887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcC--C-c-cc--e-----ec--cCC------ccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAP--S-I-LN--Y-----RW--RGQ------PLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~--~-~-~~--~-----~~--~~~------~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
+ ++....+..... ...++.++ . . .. + .. .+. .+.++++|.||++|+++|++++..
T Consensus 230 -D-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~-- 303 (473)
T PRK00141 230 -D-DEYVVQLTSAAD--LSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARS-- 303 (473)
T ss_pred -C-CHHHHHHHhhcC--CCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHH--
Confidence 4 444333332221 11222221 0 0 00 1 00 011 235789999999999999998775
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
+|++ +.+.
T Consensus 304 -----------------------------------------------------------------------lgi~~~~i~ 312 (473)
T PRK00141 304 -----------------------------------------------------------------------QGVAPEAIA 312 (473)
T ss_pred -----------------------------------------------------------------------cCCCHHHHH
Confidence 4566 6799
Q ss_pred HHHhcCCCCC-cEEEEeecCcEEEEEc--CcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEE-ecCCCCChhhh
Q psy15432 1021 RGIKACVWPG-RVQVIRKNNFKYFLDG--AHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVF-NVTGERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~~pG-R~E~v~~~~~~vilDg--AHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVf-g~~~drD~~~l 1096 (1255)
+||++++||+ |||++...+..+++|+ ||||+|+++++++++ ++++|| |++.|||.+.|
T Consensus 313 ~~l~~~~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~------------------~~~~i~gG~~kdkd~~~~ 374 (473)
T PRK00141 313 RALSSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHE------------------SVVWVAGGQLKGADIDDL 374 (473)
T ss_pred HHHhhCCCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcC------------------CEEEEecCccCCCChHHH
Confidence 9999999887 9999975433466665 999999999998763 358889 78899999999
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccc--cC----CHHHHHHHHHHHcCC-CceEEeecCCCCCC
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSI--NI----SLAIQLAYLWMFRMN-KSAELKRNQSSLPM 1169 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~--~~----~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 1169 (1255)
+..+ .+. .+.+++.++..........+. ........ .. +.++.++.++....+ +.+++..++.|++|
T Consensus 375 ~~~l-~~~-~~~~~~~~~~r~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d~ 448 (473)
T PRK00141 375 IRTH-APR-IKAAVVLGVDRAEIVAALAEH----APDAPVTVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDM 448 (473)
T ss_pred HHHH-Hhh-ccEEEEECCCHHHHHHHHHhc----CCCCcEEEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhcccc
Confidence 9998 443 445555543322111111000 00000011 11 336777777765544 67889999999999
Q ss_pred cc
Q psy15432 1170 GP 1171 (1255)
Q Consensus 1170 ~~ 1171 (1255)
.+
T Consensus 449 f~ 450 (473)
T PRK00141 449 YT 450 (473)
T ss_pred cc
Confidence 83
No 56
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=6.2e-31 Score=314.97 Aligned_cols=246 Identities=16% Similarity=0.133 Sum_probs=178.5
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.||.+||+..|+++++.++- |.|+...
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~~------------------------- 150 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLIDA------------------------- 150 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHHH-------------------------
Confidence 589999999999999999999999999877655441 1111100
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCce---e
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCI---A 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~---~ 264 (1255)
.. .....|++|+|+|+.+.-. ..++ +|+++|||||+.||+++|| |+|+|+.+|++||++..| +
T Consensus 151 ------~~-----~~~~~~~~v~E~~~~~~~~-~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 151 ------VE-----EYGEDDIIVAEVSSFQLET-IKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred ------Hh-----cCCCCCEEEEEcChhhhcc-cccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 00 1125799999999874322 2333 7999999999999999999 999999999999987654 4
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc-----------ce--eeecCc------ccccCCCchhHHhhHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI-----------LN--YRWRGQ------PLDEDWKSTVQSINISLAIQLA 325 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~-----------~~--~~~~~~------~i~l~l~G~~q~~Na~lAia~a 325 (1255)
+++. ++ +.. ...+.+.++.++.++.. .. +...+. .+.++++|.||++|+++|++++
T Consensus 217 vln~-d~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~ 291 (450)
T PRK14106 217 VLNY-DD-PRT---RSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAA 291 (450)
T ss_pred EEeC-Cc-HHH---HHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHH
Confidence 5554 33 332 22233333444332210 00 111111 1367899999999999999988
Q ss_pred HHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChH
Q psy15432 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405 (1255)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e 405 (1255)
..+ +++ ++
T Consensus 292 ~~l-----------------------------------------------------------------------gi~-~~ 299 (450)
T PRK14106 292 YLL-----------------------------------------------------------------------GIS-PD 299 (450)
T ss_pred HHc-----------------------------------------------------------------------CCC-HH
Confidence 765 567 89
Q ss_pred HHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEE
Q psy15432 406 KTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRIL 482 (1255)
Q Consensus 406 ~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 482 (1255)
++.+||+++. ||||||++.. ++..+|+| |||||+|+++++++++ . ++++
T Consensus 300 ~i~~~L~~~~~~~gR~e~i~~~~~~~vi~D~~ahNP~s~~~~l~~l~-----~-----------------------~~i~ 351 (450)
T PRK14106 300 VIANTLKTFKGVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAYE-----T-----------------------PIVL 351 (450)
T ss_pred HHHHHHHhCCCCCcceEEEeeECCEEEEeCCCccCHHHHHHHHHhCC-----C-----------------------CeEE
Confidence 9999999998 9999999974 45679999 7999999999988762 1 4778
Q ss_pred EEec-CCCCChhhhhHHhhccCCCcEEEEc
Q psy15432 483 VFNV-TGERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 483 Vfg~-~~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
|||. ..++|+.++++.+ + ..+|.++++
T Consensus 352 v~g~~~~~k~~~~~~~~l-~-~~~~~vi~~ 379 (450)
T PRK14106 352 IAGGYDKGSDFDEFAKAF-K-EKVKKLILL 379 (450)
T ss_pred EeCCcCCCCCHHHHHHHH-H-hhCCEEEEE
Confidence 8874 4778999999888 3 347888877
No 57
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=99.98 E-value=1.9e-30 Score=311.11 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=174.4
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEE--cCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFF--SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~--tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
++|+||||||||||++|+.+||+++|++++.+ .++. + + |.|..
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g--n----~---G~~~~-------------------------- 147 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG--N----F---GVSAR-------------------------- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc--c----C---ccccc--------------------------
Confidence 49999999999999999999999999988633 1111 0 0 21111
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCC--ccc----cccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC-
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGG--RYD----NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK- 259 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GG--r~D----~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k- 259 (1255)
. ...|++|+|+|+.. ..+ ..++ +|+++|||||+.||+++|+ |+++|+.+|++|++
T Consensus 148 --------------~-~~~~~~V~E~~s~~~~~~~~l~~~~~~--~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~ 209 (448)
T TIGR01081 148 --------------L-GESPFFVIEADEYDTAFFDKRSKFVHY--RPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRT 209 (448)
T ss_pred --------------c-CCCCEEEEEccCcCccccccccceeec--CCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHh
Confidence 1 23699999999983 322 2223 7999999999999999998 99999999999997
Q ss_pred -CC-ceeeeccCCCchHHHHHHHhhhccCceEEEcC----------Ccceeee--cCc---ccccCCCchhHHhhHHHHH
Q psy15432 260 -PN-CIAVTSANQRGPCKQILLETSRALNCVLLEAP----------SILNYRW--RGQ---PLDEDWKSTVQSINISLAI 322 (1255)
Q Consensus 260 -~g-~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~----------~~~~~~~--~~~---~i~l~l~G~~q~~Na~lAi 322 (1255)
++ ..+|++. +++.+...+.+.+..+ +..+... ....+.+ .+. .+.+++.|.||+.|+++|+
T Consensus 210 ~~~~~~~i~n~-dd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~ 287 (448)
T TIGR01081 210 VPGEGLILCPG-RDQSLKDTLAKGCWSE-QEFFGEQGEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAI 287 (448)
T ss_pred CCCCCEEEEeC-CCHHHHHHHHhccCCC-eEEECCCCCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHH
Confidence 33 4566666 5555554444322111 1111100 0001111 111 3567899999999999999
Q ss_pred HHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCC
Q psy15432 323 QLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFE 402 (1255)
Q Consensus 323 a~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 402 (1255)
+++..+ +++
T Consensus 288 a~~~~l-----------------------------------------------------------------------gi~ 296 (448)
T TIGR01081 288 AAARHV-----------------------------------------------------------------------GVA 296 (448)
T ss_pred HHHHHc-----------------------------------------------------------------------CCC
Confidence 988754 556
Q ss_pred ChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccE
Q psy15432 403 IDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQR 480 (1255)
Q Consensus 403 l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1255)
.+.+.++|+++. ||||||++.. +++.||+|+||||+|++++++++++.... +++
T Consensus 297 -~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~~-----------------------~~i 352 (448)
T TIGR01081 297 -IEDACEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVGG-----------------------ARI 352 (448)
T ss_pred -HHHHHHHHHhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcCC-----------------------CeE
Confidence 889999999998 8999999975 56789999999999999999999864321 267
Q ss_pred EEEEecCCC-----CChhhhhHHhhccCCCcEEEEcC
Q psy15432 481 ILVFNVTGE-----RDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 481 ilVfg~~~d-----rD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++|||...+ -+.++ +..+ . ..+|.+++++
T Consensus 353 i~I~g~~~~~~~lg~~~~~-l~~~-~-~~~d~vi~~~ 386 (448)
T TIGR01081 353 LAVLEPRSNTMKLGVHKDD-LAPS-L-GRADQVFLYQ 386 (448)
T ss_pred EEEECCCcchhhhhhHHHH-HHHH-H-HhCCEEEEcC
Confidence 899985421 01222 2333 1 2588998885
No 58
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=5e-31 Score=319.06 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=181.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|+++.+.++- |.|+.
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~~---------------------------- 157 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPVL---------------------------- 157 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHHH----------------------------
Confidence 69999999999999999999999999887776652 22321
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
.. ...+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|++||+. .++|++.
T Consensus 158 ----~~------~~~~~~~~VlE~ss~ql-~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 158 ----DV------LDEPAELLAVELSSFQL-HWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred ----Hh------ccCCCCEEEEECChHHh-Cccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 00 23578999999998853 434333 7999999999999999999 999999999999984 6778876
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCC----c-----ce-ee--ec-C----cccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPS----I-----LN-YR--WR-G----QPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~----~-----~~-~~--~~-~----~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
+++.+. .+.+.+.......+.... . .. +. +. . ..+.++++|.||++|+++|++++..+
T Consensus 224 -dd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l--- 298 (488)
T PRK03369 224 -DDSRAA-ALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV--- 298 (488)
T ss_pred -CCHHHH-HHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc---
Confidence 555443 343333221111111111 0 00 00 00 0 12567899999999999999988764
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ ++++.++|
T Consensus 299 --------------------------------------------------------------------Gi~-~e~i~~~L 309 (488)
T PRK03369 299 --------------------------------------------------------------------GVP-AGAIADAL 309 (488)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 567 89999999
Q ss_pred hcCCC-CCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEE-ecC
Q psy15432 412 KACVW-PGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVF-NVT 487 (1255)
Q Consensus 412 ~~~~~-pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVf-g~~ 487 (1255)
++|+| |||||++.. +++.||.| |||||+|++++++.+. ++++|| |..
T Consensus 310 ~~f~~~~gR~E~v~~~~gv~iIDDS~AhNp~s~~aal~~~~-----------------------------~iilI~GG~~ 360 (488)
T PRK03369 310 ASFRVGRHRAEVVAVADGITYVDDSKATNPHAARASILAYP-----------------------------RVVWIAGGLL 360 (488)
T ss_pred HhCCCCCCccEEEEcCCCEEEEECCCCCCHHHHHHHHHhCC-----------------------------CeEEEecCcC
Confidence 99996 999999975 45555556 8999999999996441 588999 788
Q ss_pred CCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 488 GERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 488 ~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
+++|++.|++.+ ....+.+++..
T Consensus 361 k~~d~~~l~~~l--~~~~~~vi~iG 383 (488)
T PRK03369 361 KGASVDALVAEM--ASRLVGAVLIG 383 (488)
T ss_pred CCCCHHHHHHHH--hhheeEEEEEc
Confidence 999999999988 33467777643
No 59
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=99.97 E-value=2.1e-30 Score=310.76 Aligned_cols=315 Identities=13% Similarity=0.130 Sum_probs=207.9
Q ss_pred cchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEE--cCcccccccceeeeCCeecChhh
Q psy15432 698 VQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFF--SSPHLIEVRERIKLNGEPISYDK 775 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~--tSPhL~~~~ERI~InG~pIs~~~ 775 (1255)
+.+.++..+...+- +. -++|+||||||||||++|+++||++.|++++.. .++. + + |.|..
T Consensus 86 ~v~~~~e~~~~~~~-~~-----~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g--n----~---G~~~~--- 147 (448)
T TIGR01081 86 PYTSGPQWLHDFVL-HD-----RWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG--N----F---GVSAR--- 147 (448)
T ss_pred CEEeHHHHHHHHHh-cC-----CCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc--c----C---ccccc---
Confidence 35666665433221 11 149999999999999999999999999987632 2221 1 1 33321
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--Ccccccccc--CCCcEEEEcCCCchh
Q psy15432 776 FTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNII--PNTAVVGITSLGYDH 851 (1255)
Q Consensus 776 f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~TNvi--~~P~VavITnIg~DH 851 (1255)
. ...|++|+|+|+. |..+...-+ .+|+++|||||+.||
T Consensus 148 -------------------------------------~-~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DH 189 (448)
T TIGR01081 148 -------------------------------------L-GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDH 189 (448)
T ss_pred -------------------------------------c-CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHh
Confidence 1 1369999999988 433311111 279999999999999
Q ss_pred hhhcCCCHHHHHHHHhcccc--C-CceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc------------cce--eccC
Q psy15432 852 TAVLGNTIEEITMQKAGIMK--P-NCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI------------LNY--RWRG 914 (1255)
Q Consensus 852 l~~LG~TleeIA~~KagI~K--~-g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~------------~~~--~~~~ 914 (1255)
+++|| |+|+|+.+|++|++ + ...+|++. +++.+..++.+.+. ..+..++.. ..+ ...+
T Consensus 190 ld~~~-t~e~~~~~K~~i~~~~~~~~~~i~n~-dd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (448)
T TIGR01081 190 ADIFD-DLKAIQRQFHHLVRTVPGEGLILCPG-RDQSLKDTLAKGCW---SEQEFFGEQGEWQAEKITADGSHFDVLLDG 264 (448)
T ss_pred ccccC-CHHHHHHHHHHHHHhCCCCCEEEEeC-CCHHHHHHHHhccC---CCeEEECCCCCEEEEEEecCCcEEEEEECC
Confidence 99998 99999999999997 3 35677776 45554444433221 111111110 011 1111
Q ss_pred C---ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCcccc
Q psy15432 915 Q---PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFS 991 (1255)
Q Consensus 915 ~---~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 991 (1255)
. .+.++++|.||+.|+++|++++..
T Consensus 265 ~~~~~~~l~l~G~hn~~Na~~A~a~~~~---------------------------------------------------- 292 (448)
T TIGR01081 265 EKVGEVKWSLVGRHNMHNALMAIAAARH---------------------------------------------------- 292 (448)
T ss_pred ceeEEEEecCCcHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence 1 356789999999999999998775
Q ss_pred CCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhcccc
Q psy15432 992 ETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 1068 (1255)
Q Consensus 992 ~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~ 1068 (1255)
++++ +.+.+||+++. ||||||++.. +++.||+|+||||+|+++++++++....
T Consensus 293 ---------------------lgi~~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D~ahNp~s~~~~l~~l~~~~~--- 348 (448)
T TIGR01081 293 ---------------------VGVAIEDACEALGSFVNAKRRLELKGEANGITVYDDFAHHPTAIEATLQGLRQKVG--- 348 (448)
T ss_pred ---------------------cCCCHHHHHHHHHhCCCCCcceEEEEecCCeEEEEeCCCCHHHHHHHHHHHHHhcC---
Confidence 3556 67999999998 8999999975 4678999999999999999999986421
Q ss_pred CCCcccCCCCCcEEEEEecCCC-----CChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCC
Q psy15432 1069 NPTQSKSSNVIQRILVFNVTGE-----RDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINIS 1141 (1255)
Q Consensus 1069 ~~~~~~~~~~~~~vlVfg~~~d-----rD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~ 1141 (1255)
.+++++|||...+ -+.++ +..+ .. .+|.+++++....... . .+.+.. ....+..+
T Consensus 349 ---------~~~ii~I~g~~~~~~~lg~~~~~-l~~~-~~-~~d~vi~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 410 (448)
T TIGR01081 349 ---------GARILAVLEPRSNTMKLGVHKDD-LAPS-LG-RADQVFLYQPGQIPWD-V-----AEVAAQCVQPANVSAD 410 (448)
T ss_pred ---------CCeEEEEECCCcchhhhhhHHHH-HHHH-HH-hCCEEEEcCCCCCccC-H-----HHHHHhcCCCeEEcCC
Confidence 1356889985421 01222 2333 12 4788988864321100 0 011111 11223457
Q ss_pred HHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1142 LAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.++.++.+.....+++++|+-|.++.
T Consensus 411 ~~~a~~~~~~~a~~gd~VLv~gag~~ 436 (448)
T TIGR01081 411 FDAFVAMIVKNAQPGDHILVMSNGGF 436 (448)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 88888888877778899999998864
No 60
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=99.97 E-value=2.7e-30 Score=309.74 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=181.3
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||+.+|+....+ +.|. +.... ...
T Consensus 100 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~-------------~gg~-~~~~~-~~~--------------------- 143 (448)
T TIGR01082 100 HSIAVAGTHGKTTTTAMIAVILKEAGLDPTVV-------------VGGL-VKEAG-TNA--------------------- 143 (448)
T ss_pred cEEEEECCCChHHHHHHHHHHHHHcCCCCeEE-------------ECcc-cccCC-ccc---------------------
Confidence 69999999999999999999999999843222 1111 11000 000
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhh-hcCCCHHHHHHHHHcccCC---Ccee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTA-VLGNTIEEITMQKAGIMKP---NCIA 264 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld-~lG~Tle~Ia~~KagI~k~---g~~~ 264 (1255)
.....|++|+|+++..... . ..+|+++|||||+.||+| +++ |+|+|+.+|..|++. +..+
T Consensus 144 ------------~~~~~~~~V~E~s~~q~~~-~--~~~p~vaVitNI~~DHld~~~~-s~e~y~~aK~~i~~~~~~~~~~ 207 (448)
T TIGR01082 144 ------------RLGSGEYLVAEADESDASF-L--HLQPNVAIVTNIEPDHLDTYGS-SFERLKAAFEKFIHNLPFYGLA 207 (448)
T ss_pred ------------ccCCCCEEEEECCCccchH-h--hccCCEEEEecCChhhcchhcC-CHHHHHHHHHHHHHhCCCCCEE
Confidence 0123599999999764322 2 237999999999999999 665 999999999999964 6678
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcC-Cc--------------ceeee--cC---cccccCCCchhHHhhHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAP-SI--------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQL 324 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~-~~--------------~~~~~--~~---~~i~l~l~G~~q~~Na~lAia~ 324 (1255)
|++. +++...... +.+... ...+... .. ..|.+ .. ..+.++++|.||..|+++|+++
T Consensus 208 V~n~-dd~~~~~~~-~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~ 284 (448)
T TIGR01082 208 VICA-DDPVLRELV-PKATEQ-VITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAV 284 (448)
T ss_pred EEEC-CCHHHHHHH-hhcCCC-EEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHH
Confidence 8887 555544433 322211 1112111 00 01111 11 1356789999999999999998
Q ss_pred HHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCCh
Q psy15432 325 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 404 (1255)
Q Consensus 325 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 404 (1255)
+..+ +++ +
T Consensus 285 ~~~l-----------------------------------------------------------------------gi~-~ 292 (448)
T TIGR01082 285 ALEL-----------------------------------------------------------------------GID-F 292 (448)
T ss_pred HHHc-----------------------------------------------------------------------CCC-H
Confidence 8664 566 8
Q ss_pred HHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEE
Q psy15432 405 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRIL 482 (1255)
Q Consensus 405 e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 482 (1255)
+.+.++|++|+ ++||||++.. +++.||+||||||+++++++++++..... +++++
T Consensus 293 ~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~~-----------------------~~ii~ 349 (448)
T TIGR01082 293 EAILRALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYPD-----------------------KRIVV 349 (448)
T ss_pred HHHHHHHHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcCC-----------------------CeEEE
Confidence 99999999999 5899999964 56889999999999999999999875321 26889
Q ss_pred EEe---cCCCCC-hhhhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 483 VFN---VTGERD-PTKLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 483 Vfg---~~~drD-~~~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
||| ..++|+ .+.+++.+ . .+|.+++++..+..+.
T Consensus 350 i~g~~~~~r~k~~~~~~~~~l-~--~~d~v~l~~~~~~~~~ 387 (448)
T TIGR01082 350 VFQPHRYSRTRDLFDDFAKVL-S--DADELILLDIYAAGEE 387 (448)
T ss_pred EECCCCCccHHHHHHHHHHHH-H--hCCEEEEecccCCCCC
Confidence 997 455555 35677777 3 3899999987665554
No 61
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=99.97 E-value=5.2e-30 Score=305.81 Aligned_cols=245 Identities=19% Similarity=0.219 Sum_probs=179.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||++|+.+||+.+|+++.+-++- |.|
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gni------------g~~----------------------------- 140 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNI------------GTP----------------------------- 140 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECcc------------CHH-----------------------------
Confidence 379999999999999999999999999886544321 111
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCC---cee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPN---CIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g---~~~ 264 (1255)
.+..+ ...+.|++|+|+|+. .++.++.+ +|+++|||||+.||+|+|| |+++|+.+|++|++.. ..+
T Consensus 141 ---~~~~~-----~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~~ 209 (433)
T TIGR01087 141 ---ALEVL-----DQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVA 209 (433)
T ss_pred ---HHHHH-----hccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 01111 114689999999965 45677776 7999999999999999999 9999999999999753 467
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc----ceee-------ecCcccccCCCchhHHhhHHHHHHHHHHHHHhhc
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI----LNYR-------WRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN 333 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~----~~~~-------~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~ 333 (1255)
|++. +++ ....+. ...++.++.++.. ..+. +....+.++++|.||+.|+++|++++..+
T Consensus 210 i~n~-dd~-~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----- 279 (433)
T TIGR01087 210 VLNA-DDP-RFARLA---QKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKSL----- 279 (433)
T ss_pred EEEC-CCH-HHHHhh---hhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHHc-----
Confidence 7776 443 322222 2222333332211 0111 11113678999999999999999988765
Q ss_pred cchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhc
Q psy15432 334 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKA 413 (1255)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~ 413 (1255)
|++ ++.+.++|++
T Consensus 280 ------------------------------------------------------------------gi~-~~~i~~~L~~ 292 (433)
T TIGR01087 280 ------------------------------------------------------------------GLN-LEAILEALRS 292 (433)
T ss_pred ------------------------------------------------------------------CCC-HHHHHHHHHh
Confidence 567 8999999999
Q ss_pred CC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEe-cCCC
Q psy15432 414 CV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFN-VTGE 489 (1255)
Q Consensus 414 ~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg-~~~d 489 (1255)
|. ||||||++.. +++.||+|+ ||||+|+.++++.+. . ++++||| ...+
T Consensus 293 f~g~~~R~e~v~~~~g~~~idD~~atn~~a~~~al~~~~-----~-----------------------~ii~I~Gg~~~~ 344 (433)
T TIGR01087 293 FKGLPHRLEYVGQKNGVHFYNDSKATNVHATLAALSAFD-----N-----------------------PVILIVGGDDKG 344 (433)
T ss_pred CCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhCC-----C-----------------------CEEEEEcCCCCC
Confidence 98 9999999975 567899995 999999999988662 1 5788996 4566
Q ss_pred CChhhhhHHhhccCCCcEEEEc
Q psy15432 490 RDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 490 rD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+|...+.+.+ . ...+.|++.
T Consensus 345 ~d~~~~~~~l-~-~~~~~v~~~ 364 (433)
T TIGR01087 345 ADFSPLAPAA-A-GKVKAVLAI 364 (433)
T ss_pred CCHHHHHHHH-H-hhCCEEEEE
Confidence 7888888877 3 345666653
No 62
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=9e-31 Score=314.01 Aligned_cols=310 Identities=17% Similarity=0.166 Sum_probs=206.9
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.+.++..+.... .+.++|+||||||||||++|+.+||+.+|+++.+-++. |.|+..
T Consensus 90 v~~e~el~~~~~-------~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~l~----- 145 (454)
T PRK01368 90 ITSDIDLLFEKS-------KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GVPALQ----- 145 (454)
T ss_pred eecHHHHHHHHh-------cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CHHHhc-----
Confidence 455655544432 12479999999999999999999999999987655442 433210
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 858 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~T 858 (1255)
...+.|++|+|+|+... +.+..+ +|++++||||+.||+++|| |
T Consensus 146 ----------------------------------~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s 188 (454)
T PRK01368 146 ----------------------------------AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-D 188 (454)
T ss_pred ----------------------------------ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-C
Confidence 12346999999999864 334434 7999999999999999999 9
Q ss_pred HHHHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc----cc---------eec--c---CCcc
Q psy15432 859 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI----LN---------YRW--R---GQPL 917 (1255)
Q Consensus 859 leeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----~~---------~~~--~---~~~v 917 (1255)
+|+|+.+|..||+ ++..+|++. +++.......+......++++.++.. .. +.+ . ...+
T Consensus 189 ~e~y~~aK~~i~~~~~~~~~~Vln~-Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (454)
T PRK01368 189 MDGYIAAKSKIFDRMDKDSYAVINI-DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPF 267 (454)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeC-CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEe
Confidence 9999999999995 466788887 44433333222111112233322210 00 011 0 1134
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCC
Q psy15432 918 DEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 997 (1255)
Q Consensus 918 ~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1255)
.++++|.||..|+++|++++..
T Consensus 268 ~~~l~G~hn~~Na~aAia~~~~---------------------------------------------------------- 289 (454)
T PRK01368 268 NKNLQGKHNCENIAASYAVAKI---------------------------------------------------------- 289 (454)
T ss_pred cCCCCchhhHHHHHHHHHHHHH----------------------------------------------------------
Confidence 5678999999999999998775
Q ss_pred CCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcc
Q psy15432 998 GHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQS 1073 (1255)
Q Consensus 998 ~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~ 1073 (1255)
++++ +.+.++|++|. ||||||++.. +++.||+| +||||+|+.++++.|+
T Consensus 290 ---------------lgi~~~~i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~~------------ 342 (454)
T PRK01368 290 ---------------IGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKALD------------ 342 (454)
T ss_pred ---------------cCCCHHHHHHHHHhCCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhcC------------
Confidence 4566 67999999988 9999999986 57779999 9999999999998772
Q ss_pred cCCCCCcEEEEEecCCCCChhhhhhhhhc-CCCCcEEEEcCCCCcccccccCCCCCccccc-ccccccCCHHHHHHHHHH
Q psy15432 1074 KSSNVIQRILVFNVTGERDPTKLLSPLLQ-SNQFEYILVTPNILTNEIRWRGQPLDEDWKS-TVQSINISLAIQLAYLWM 1151 (1255)
Q Consensus 1074 ~~~~~~~~vlVfg~~~drD~~~ll~~L~~-~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~ 1151 (1255)
++++|+|.+ |...+++.|.. -.....+++.+.....-.. .+.. .......+.++.++.+..
T Consensus 343 ------~i~lI~Gg~---dk~~~~~~L~~~~~~v~~v~~~g~~~~~l~~--------~~~~~~~~~~~~~l~~Av~~a~~ 405 (454)
T PRK01368 343 ------NIYWLAGGI---PKEGGIEEIKPYFSKIKKAYFYGQAKEIFAN--------TAKNIVDFVICDNLEQAFDLAYK 405 (454)
T ss_pred ------CeEEEeccc---CCCCCHHHHHHHHHhhcEEEEECcCHHHHHH--------HhhcCCCEEEcCCHHHHHHHHHH
Confidence 368888866 23444454421 0123334443322211111 1211 012233467888887766
Q ss_pred HcCC-----CceEEeecCCCCCCccc
Q psy15432 1152 FRMN-----KSAELKRNQSSLPMGPH 1172 (1255)
Q Consensus 1152 ~~~~-----~~~~l~~~~~~~~~~~~ 1172 (1255)
...+ +.|.|..++.|++|.+-
T Consensus 406 ~a~~g~~~~d~VLlSPacaSfD~f~~ 431 (454)
T PRK01368 406 DAVGDNAEVKNILLAPSCSSYDQFKN 431 (454)
T ss_pred HhcCCCCCCCEEEeChhhhccccccC
Confidence 6666 47999999999999843
No 63
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=2.2e-29 Score=303.75 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=178.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+++||++.|+++++.++. |.|++..
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~~-------------------------- 163 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSAA-------------------------- 163 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHHH--------------------------
Confidence 69999999999999999999999999998766542 2232200
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
+ . ...++|++|+|+|+.+. +-+..+ +|+++|||||+.||+|+|| |+|+|+.+|+.|++. ..+|++.
T Consensus 164 ---l--~-----~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 164 ---L--V-----AQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred ---H--h-----cCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 0 0 24568999999999975 334444 7999999999999999999 999999999999975 3566766
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCCc--ce--e-----eec--C------cccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPSI--LN--Y-----RWR--G------QPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~~--~~--~-----~~~--~------~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
+++... .+...........|..... .. + ... + ..+.++++|.||++|+++|++++..+
T Consensus 230 -Dd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l--- 304 (473)
T PRK00141 230 -DDEYVV-QLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ--- 304 (473)
T ss_pred -CCHHHH-HHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc---
Confidence 444333 3333221111122322110 00 1 000 1 02357899999999999999988654
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ .+.+.+||
T Consensus 305 --------------------------------------------------------------------gi~-~~~i~~~l 315 (473)
T PRK00141 305 --------------------------------------------------------------------GVA-PEAIARAL 315 (473)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 566 89999999
Q ss_pred hcCCCCC-ceEEEEecCcEEEEcc--CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEE-ecC
Q psy15432 412 KACVWPG-RVQVIRKNNFKYFLDG--AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVF-NVT 487 (1255)
Q Consensus 412 ~~~~~pG-R~e~v~~~~~~vilDg--AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVf-g~~ 487 (1255)
++++||| |||++...+..+++|+ ||||+|+++++++++ ++++|| |+.
T Consensus 316 ~~~~~~~~R~e~~~~~~~~~iiDdsyahNp~s~~~~l~~l~-----------------------------~~~~i~gG~~ 366 (473)
T PRK00141 316 SSFEVAGHRGQVVAEHGGVTWIDNSKATNPHAADAALAGHE-----------------------------SVVWVAGGQL 366 (473)
T ss_pred hhCCCCCCceEEEEEeCCEEEEEcCCCCCHHHHHHHHHhcC-----------------------------CEEEEecCcc
Confidence 9999887 9999975323456665 999999999988762 468899 778
Q ss_pred CCCChhhhhHHhhccCCCcEEEEc
Q psy15432 488 GERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 488 ~drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
+|||.+.|+..+ +. ..+.+++.
T Consensus 367 kdkd~~~~~~~l-~~-~~~~~~~~ 388 (473)
T PRK00141 367 KGADIDDLIRTH-AP-RIKAAVVL 388 (473)
T ss_pred CCCChHHHHHHH-Hh-hccEEEEE
Confidence 999999999998 43 34555554
No 64
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.5e-29 Score=302.77 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=180.9
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
-++|+||||||||||++|+.+||+.+|+++.+.++. |.|.+.-
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~~------------------------- 150 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASEV------------------------- 150 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHHH-------------------------
Confidence 379999999999999999999999999877554431 2332200
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCce---e
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCI---A 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~---~ 264 (1255)
+ . ...+.|++|+|+++.+.. .++.+ +|+++|||||+.||+++|| |+++|+.+|++|+++..+ +
T Consensus 151 ----~-~------~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~~ 216 (447)
T PRK02472 151 ----A-Q------KATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDYL 216 (447)
T ss_pred ----H-h------cCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 0 0 123569999999988654 35565 7999999999999999999 999999999999987554 7
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcC--Cc--c-------eeeecCc----ccccCCCchhHHhhHHHHHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAP--SI--L-------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWM 329 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~--~~--~-------~~~~~~~----~i~l~l~G~~q~~Na~lAia~a~~~l 329 (1255)
|++. +++.......+ ..+.++.++ .. . .+.+.+. .++++++|.||++|+++|++++..+
T Consensus 217 v~n~-dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l- 290 (447)
T PRK02472 217 VINF-DQEEVKELAKQ----TKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL- 290 (447)
T ss_pred EEeC-CcHHHHHHHhh----cCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc-
Confidence 7776 55554433222 112222111 00 0 1112111 2368899999999999999988764
Q ss_pred HhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHH
Q psy15432 330 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYR 409 (1255)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~ 409 (1255)
+++ ++.+.+
T Consensus 291 ----------------------------------------------------------------------gi~-~~~i~~ 299 (447)
T PRK02472 291 ----------------------------------------------------------------------GVS-NEAIRE 299 (447)
T ss_pred ----------------------------------------------------------------------CCC-HHHHHH
Confidence 567 899999
Q ss_pred HHhcCC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec
Q psy15432 410 GIKACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV 486 (1255)
Q Consensus 410 gL~~~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~ 486 (1255)
+|++|. ||||||++.. +++.||+|+ ||||+|+..+++.+ . . ++++|||.
T Consensus 300 ~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~N~~s~~~al~~~----~-~-----------------------~ii~I~g~ 351 (447)
T PRK02472 300 VLSTFSGVKHRLQYVGTIDGRKFYNDSKATNILATQKALSGF----N-Q-----------------------PVVLLAGG 351 (447)
T ss_pred HHHhCCCCCCcceEEEEECCeEEEECCCCCCHHHHHHHHHhC----C-C-----------------------CEEEEECC
Confidence 999998 9999999964 467899996 99999998877654 1 1 68999997
Q ss_pred CC-CCChhhhhHHhhccCCCcEEEEc
Q psy15432 487 TG-ERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 487 ~~-drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
.. ++|++++++.+ . . +|.|++.
T Consensus 352 ~~~~~~~~~l~~~l-~-~-~~~v~~~ 374 (447)
T PRK02472 352 LDRGNEFDELVPYL-K-N-VKAMVVF 374 (447)
T ss_pred CCCCCCHHHHHHHH-h-c-cCEEEEE
Confidence 64 68999999988 3 3 7888875
No 65
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=8.1e-30 Score=307.13 Aligned_cols=249 Identities=16% Similarity=0.113 Sum_probs=177.9
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+.+|.++.+.++- |.|+.+
T Consensus 116 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~~--------------------------- 156 (468)
T PRK04690 116 GTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLLE--------------------------- 156 (468)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchHH---------------------------
Confidence 79999999999999999999999999887665542 333310
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc--eeee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC--IAVT 266 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~--~~v~ 266 (1255)
.+. ...+.|++|+|+|+...-+..-...+|+++|||||+.||+++|| ++++|..+|++||+... .+|+
T Consensus 157 --~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~~~v~ 226 (468)
T PRK04690 157 --VLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRPRIALL 226 (468)
T ss_pred --Hhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCCCeEEE
Confidence 000 12356999999999854333221237999999999999999999 99999999999997653 3555
Q ss_pred ccCCCchHHHHHHHhhhccCceEEEcCCc------ceeeecC-----cccccCCCchhHHhhHHHHHHHHHHHHHhhccc
Q psy15432 267 SANQRGPCKQILLETSRALNCVLLEAPSI------LNYRWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKS 335 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~~~l~~~~~~------~~~~~~~-----~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~ 335 (1255)
+. +++... .+.. ....++.++.. ..+.+.+ ..+.+++.|.||..|+++|++++..+
T Consensus 227 n~-dd~~~~-~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l------- 293 (468)
T PRK04690 227 NA-ADPRLA-ALQL----PDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL------- 293 (468)
T ss_pred eC-ccHHHH-HHhc----CCCeEEEeeCCccceecceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc-------
Confidence 65 444332 2221 11222222110 0111111 12467899999999999999988754
Q ss_pred hhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC
Q psy15432 336 AELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV 415 (1255)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~ 415 (1255)
+++ ++.+.++|+++.
T Consensus 294 ----------------------------------------------------------------gi~-~~~i~~~l~~~~ 308 (468)
T PRK04690 294 ----------------------------------------------------------------GLD-AVALAPAAAGFR 308 (468)
T ss_pred ----------------------------------------------------------------CCC-HHHHHHHHHhCC
Confidence 556 899999999996
Q ss_pred -CCCceEEEEec-CcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec-CCCCC
Q psy15432 416 -WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV-TGERD 491 (1255)
Q Consensus 416 -~pGR~e~v~~~-~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~-~~drD 491 (1255)
||||||++... ++.||.| +||||+|++++++.+. . +++++|||. ..++|
T Consensus 309 ~~~gR~e~~~~~~g~~iidDs~ahNp~a~~~al~~~~----~-----------------------~~i~~i~Gg~~k~kd 361 (468)
T PRK04690 309 PLPNRLQELGSRDGITYVNDSISTTPHASLAALDCFA----G-----------------------RRVALLVGGHDRGLD 361 (468)
T ss_pred CCCCCcEEEEccCCeEEEEeCCCCCHHHHHHHHHhcc----C-----------------------CcEEEEEcCCCCCCC
Confidence 99999999864 6667777 5999999999876542 1 168999996 57889
Q ss_pred hhhhhHHhhccCCCcEEEEcC
Q psy15432 492 PTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 492 ~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++.|++.+ .....+.++++.
T Consensus 362 ~~~l~~~l-~~~~~~~v~~~g 381 (468)
T PRK04690 362 WTDFAAHM-AQRAPLEIVTMG 381 (468)
T ss_pred HHHHHHHH-HhccCeEEEEeC
Confidence 99999999 332136666654
No 66
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=99.97 E-value=1.2e-29 Score=304.10 Aligned_cols=303 Identities=15% Similarity=0.139 Sum_probs=203.9
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|++...+..-. + |.+....
T Consensus 100 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~-------~---~~~~~~~-------------------------- 143 (448)
T TIGR01082 100 HSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGL-------V---KEAGTNA-------------------------- 143 (448)
T ss_pred cEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcc-------c---ccCCccc--------------------------
Confidence 699999999999999999999999998432221100 0 1111100
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~av 877 (1255)
.....|++|+|++...... . ..+|+++|||||+.||++++++|+|+|+.+|.+|++. +..+|
T Consensus 144 ------------~~~~~~~~V~E~s~~q~~~--~-~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V 208 (448)
T TIGR01082 144 ------------RLGSGEYLVAEADESDASF--L-HLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAV 208 (448)
T ss_pred ------------ccCCCCEEEEECCCccchH--h-hccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 1123599999998763322 2 2379999999999999994444999999999999964 77889
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCC-----------------ccceec--cC---CccccCCCchhHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPS-----------------ILNYRW--RG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~-----------------~~~~~~--~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
++. +++...... +.+.. ....+.. ...+.+ .+ ..+.++++|.||..|+++|++
T Consensus 209 ~n~-dd~~~~~~~-~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a 283 (448)
T TIGR01082 209 ICA-DDPVLRELV-PKATE---QVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIA 283 (448)
T ss_pred EEC-CCHHHHHHH-hhcCC---CEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHH
Confidence 987 454443332 32221 1111110 000111 11 125678999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
++.. +|+
T Consensus 284 ~~~~-------------------------------------------------------------------------lgi 290 (448)
T TIGR01082 284 VALE-------------------------------------------------------------------------LGI 290 (448)
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 8875 456
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe---cCC
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN---VTG 1089 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg---~~~ 1089 (1255)
+ +.+.++|++|+ +|||||++.. +++++|+||||||+++++++++++.... .+++++||| .++
T Consensus 291 ~~~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D~ahn~~~~~a~~~al~~~~~------------~~~ii~i~g~~~~~r 358 (448)
T TIGR01082 291 DFEAILRALANFQGVKRRFEILGEFGGVLLIDDYAHHPTEIKATLKAARQGYP------------DKRIVVVFQPHRYSR 358 (448)
T ss_pred CHHHHHHHHHhCCCCCccceEEEEeCCeEEEEcCCCCHHHHHHHHHHHHHhcC------------CCeEEEEECCCCCcc
Confidence 6 67999999999 6899999964 4678999999999999999999987531 146789997 555
Q ss_pred CCCh-hhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCC---cccccc---cccccCCHHHHHHHHHHHcCCCceEEee
Q psy15432 1090 ERDP-TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLD---EDWKST---VQSINISLAIQLAYLWMFRMNKSAELKR 1162 (1255)
Q Consensus 1090 drD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~---~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1162 (1255)
+|+. +.+.+.+ . . +|.+++++..+..+.+..+.+.. ..+... ......+.++.+..++....+++++|+-
T Consensus 359 ~k~~~~~~~~~l-~-~-~d~v~l~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~a~~~a~~gD~VLl~ 435 (448)
T TIGR01082 359 TRDLFDDFAKVL-S-D-ADELILLDIYAAGEEPINGIDGKSLARKITQLGKIEPYFVPDLAELVEFLAAVLQSGDLILTM 435 (448)
T ss_pred HHHHHHHHHHHH-H-h-CCEEEEecccCCCCCCCCCCCHHHHHHHHhhcCCCceEEeCCHHHHHHHHHHhcCCCCEEEEE
Confidence 5553 5667766 3 3 89999887544332221111111 112111 1112347888888888888888999998
Q ss_pred cCCCC
Q psy15432 1163 NQSSL 1167 (1255)
Q Consensus 1163 ~~~~~ 1167 (1255)
|.++.
T Consensus 436 G~g~~ 440 (448)
T TIGR01082 436 GAGDI 440 (448)
T ss_pred CCCCH
Confidence 88754
No 67
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.9e-29 Score=301.66 Aligned_cols=293 Identities=14% Similarity=0.096 Sum_probs=203.6
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|.++++-++. |.|.. .
T Consensus 109 ~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G~~~~---------------~------------ 149 (438)
T PRK04663 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------GVPAL---------------D------------ 149 (438)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------CHHHH---------------h------------
Confidence 79999999999999999999999999987654431 33310 0
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
....+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+++|| |+|+|+.+|..||+....+|++.
T Consensus 150 -----------~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n~ 215 (438)
T PRK04663 150 -----------LLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVNR 215 (438)
T ss_pred -----------hhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEeC
Confidence 134467999999999864 234444 7999999999999999999 99999999999998766788887
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC-----------ccceecc-CC----ccccCCCchhHHHHHHHHHHHHHHHHHhh
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS-----------ILNYRWR-GQ----PLDEDWKSTVQSINISLAIQLAYLWMFRM 944 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~-----------~~~~~~~-~~----~v~l~L~G~hq~~Na~lAiala~~~l~~~ 944 (1255)
+|+...... . .++++.++. ...+... +. .+.++++|.||++|+++|++++..
T Consensus 216 -dd~~~~~~~-~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~----- 283 (438)
T PRK04663 216 -DDKQTYPDH-A-----ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDA----- 283 (438)
T ss_pred -CCHHHHhhh-c-----CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHH-----
Confidence 443222111 1 122222210 0011111 11 367889999999999999998875
Q ss_pred cchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHH
Q psy15432 945 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGI 1023 (1255)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL 1023 (1255)
+|++ +++.++|
T Consensus 284 --------------------------------------------------------------------lGi~~~~i~~~L 295 (438)
T PRK04663 284 --------------------------------------------------------------------AGVDYRKALDAL 295 (438)
T ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Confidence 4666 6799999
Q ss_pred hcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhhh
Q psy15432 1024 KACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLSP 1099 (1255)
Q Consensus 1024 ~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~~ 1099 (1255)
++|+ +|||||++.. +++.+|.| +++||+|+.++++.+.. .+++++|+|.+. ..|.+.+.+.
T Consensus 296 ~~f~g~~~R~e~v~~~~g~~~idDs~~tn~~s~~~Al~~~~~---------------~~~~i~IlGg~~~~~~~~~l~~~ 360 (438)
T PRK04663 296 KSYTGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLEI---------------EGKLYLLVGGVGKGADFSPLKPV 360 (438)
T ss_pred HhCCCCCCceEEeeeeCCcEEEeCCCcCCHHHHHHHHHhccc---------------CCcEEEEECCccCCCCHHHHHHH
Confidence 9999 9999999975 46666666 79999999999997641 136899999774 3567766665
Q ss_pred hhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCce-EEeecCCCCCCcccc
Q psy15432 1100 LLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSA-ELKRNQSSLPMGPHF 1173 (1255)
Q Consensus 1100 L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 1173 (1255)
+ .... +.+++.+.......... ....+..+.++.++.+.....+.++ .+..++.|++|-+-|
T Consensus 361 ~-~~~~-~~vi~~G~~~~~~~~~~----------~~~~~~~~~e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~ 423 (438)
T PRK04663 361 L-ATLN-LQLCCFGEDGDQFMPLH----------PSARRFDTMEDAIESISPQLKSGDMVMLSPACASFDQFKNF 423 (438)
T ss_pred H-HhhC-cEEEEECCCHHHHHHHh----------ccCeecCCHHHHHHHHHHhCCCCCEEEECcccccccCcCCH
Confidence 5 3222 46777665432211110 0112334788888888765555544 455588999887433
No 68
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.8e-29 Score=296.81 Aligned_cols=337 Identities=18% Similarity=0.184 Sum_probs=242.7
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcc-ccc--cc
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPV-EMQ--AV 86 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~-~~~--~~ 86 (1255)
..++.+.-++|++.|+..|+...|-+-+++.+......++..-. +..+..+. .-. ..
T Consensus 22 ~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~--------------------~v~r~~~~~~~~~~~~ 81 (451)
T COG0770 22 VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAV--------------------LVARPVLPPAIPLVVL 81 (451)
T ss_pred cceeeEEeecccCCCCceeEEccCccccccchHHHHHhcCCEEE--------------------EEecCcCCcccccceE
Confidence 35677888999999999999999999999887544222211100 00011000 000 24
Q ss_pred chHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~ 166 (1255)
-+.++.++|++|+...++..+.++|+|||++|||||..|+++||+..|. .+.||+ ++|.-| |.|.+
T Consensus 82 ~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~---v~~t~g--n~Nn~i---GlPlt------ 147 (451)
T COG0770 82 LVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGK---VHATPG--NFNNEI---GLPLT------ 147 (451)
T ss_pred EeHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHhhcCe---EecCCC--ccCccc---cchhH------
Confidence 6899999999999998777789999999999999999999999998553 577776 333333 33332
Q ss_pred HHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccC--CccccccccCCccEEEEcCCCcchhhhcC
Q psy15432 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNTNIIPNTAVVGITSLGYDHTAVLG 244 (1255)
Q Consensus 167 ~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~tnii~~P~v~vITnIg~DHld~lG 244 (1255)
.++ .....|++|+|+|+. |+++-+--+-+|++++||||+.+|++++|
T Consensus 148 ---------------------ll~----------~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg 196 (451)
T COG0770 148 ---------------------LLR----------LPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG 196 (451)
T ss_pred ---------------------HHh----------CCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC
Confidence 111 345589999999998 78877777778999999999999999999
Q ss_pred CCHHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc--c--------------eeeecCc--
Q psy15432 245 NTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L--------------NYRWRGQ-- 303 (1255)
Q Consensus 245 ~Tle~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--~--------------~~~~~~~-- 303 (1255)
|.+.|+++|+.|+. ++..+|++. |.+.......... ...++.++.. . .+.....
T Consensus 197 -s~e~Ia~aK~Ei~~~~~~~g~ai~n~--d~~~~~~~~~~~~--~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~ 271 (451)
T COG0770 197 -SREGIAEAKAEILAGLRPEGIAILNA--DNPLLKNWAAKIG--NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGG 271 (451)
T ss_pred -CHHHHHHHHHHHHhccCCCcEEEEEC--ccHHHHHHHhhcC--CCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCc
Confidence 79999999999995 444466665 5444333333221 1222222210 1 1111111
Q ss_pred --ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCC
Q psy15432 304 --PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 381 (1255)
Q Consensus 304 --~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1255)
.+.++++|.||+.|+++|+++|..+
T Consensus 272 ~~~~~l~~~G~hn~~NalaA~a~a~~l----------------------------------------------------- 298 (451)
T COG0770 272 EAEFELPLPGRHNVTNALAAAALALEL----------------------------------------------------- 298 (451)
T ss_pred eEEEEecCCcHhHHHHHHHHHHHHHHc-----------------------------------------------------
Confidence 4889999999999999999999775
Q ss_pred CCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceE-EEEecCcEEEEc-cCCCHHHHHHHHHHHHhhhhccccc
Q psy15432 382 PGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQ-VIRKNNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASS 458 (1255)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e-~v~~~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~ 458 (1255)
|++ .++|++||+++. .+||+| +...++.++|.| |.-||+||.++++.+......
T Consensus 299 ------------------G~~-~e~i~~~L~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~---- 355 (451)
T COG0770 299 ------------------GLD-LEEIAAGLKELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALPGR---- 355 (451)
T ss_pred ------------------CCC-HHHHHHHHHhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCccC----
Confidence 677 999999999999 999999 444567788888 899999999999999876432
Q ss_pred CccCCCCCCCCCccCCCCCccEEEEEecCCC------CChhhhhHHhhccCCCcEEEEcCC
Q psy15432 459 SRSVSSCPLDPTQSKSSNVIQRILVFNVTGE------RDPTKLLSPLLQSNQFEYILVTPN 513 (1255)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~d------rD~~~ll~~L~~~~~~d~vi~t~~ 513 (1255)
+.++|.|.|.+ ..+.++.+.+ ....+|.+++..+
T Consensus 356 --------------------~~i~VlGdM~ELG~~s~~~H~~v~~~~-~~~~~d~v~~~G~ 395 (451)
T COG0770 356 --------------------KGIAVLGDMLELGEESEELHEEVGEYA-VEAGIDLVFLVGE 395 (451)
T ss_pred --------------------CcEEEeCChhhhCccHHHHHHHHHHHH-HhcCceEEEEEcc
Confidence 23899998754 2355566666 4445899998765
No 69
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5.3e-29 Score=293.29 Aligned_cols=332 Identities=15% Similarity=0.151 Sum_probs=232.0
Q ss_pred HHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccc
Q psy15432 683 IRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRE 762 (1255)
Q Consensus 683 l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~E 762 (1255)
+++++++|. +.+.++..+....+ ..|+|+||||||||||++|+++||+++|+++.+-++.
T Consensus 86 v~~A~~~gi------~i~~dieL~~r~~~-------~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------- 145 (448)
T COG0771 86 VEAAKAAGI------EIIGDIELFYRLSG-------EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------- 145 (448)
T ss_pred HHHHHHcCC------cEEeHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc-------
Confidence 445555665 46778888777652 2469999999999999999999999999999887765
Q ss_pred eeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEE
Q psy15432 763 RIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVV 842 (1255)
Q Consensus 763 RI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~Va 842 (1255)
|.|+.+-. . .....|+.|+|+++...-..-++ +|.++
T Consensus 146 -----G~p~l~~~------------~------------------------~~~~~d~~VlElSSfQL~~~~~~--~P~ia 182 (448)
T COG0771 146 -----GTPALELL------------E------------------------QAEPADVYVLELSSFQLETTSSL--RPEIA 182 (448)
T ss_pred -----CccHHHhh------------c------------------------ccCCCCEEEEEccccccccCccC--CccEE
Confidence 56644211 0 23478999999999876666566 79999
Q ss_pred EEcCCCchhhhhcCCCHHHHHHHHhccccCCc-eEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc---cceeccCC---
Q psy15432 843 GITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAVTSANQRGPCKQILLETSRALNCVLLEAPSI---LNYRWRGQ--- 915 (1255)
Q Consensus 843 vITnIg~DHl~~LG~TleeIA~~KagI~K~g~-~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~---~~~~~~~~--- 915 (1255)
+||||+.||+++|| ++|+|+..|..|++... .+|++. |++....+...+.......+..... ..|...+.
T Consensus 183 vilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~Vin~--dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~ 259 (448)
T COG0771 183 VILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAVINA--DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLVF 259 (448)
T ss_pred EEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEEEeC--CcHHHhhhhhhcccceeEEEEccccccccceeecchhcc
Confidence 99999999999999 99999999999998776 788876 4444333333321111122222211 11111111
Q ss_pred -------ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCc
Q psy15432 916 -------PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHL 988 (1255)
Q Consensus 916 -------~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1255)
.-.++++|.||..|+++|+++|+.
T Consensus 260 ~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~------------------------------------------------- 290 (448)
T COG0771 260 KGEKLLPADELKLPGAHNLENALAALALARA------------------------------------------------- 290 (448)
T ss_pred ccccccchhhcCCcchhhHHHHHHHHHHHHH-------------------------------------------------
Confidence 125789999999999999999886
Q ss_pred cccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEEc-CcCHHHHHHHHHHHHhhh
Q psy15432 989 SFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDG-AHTTDSIELCAKWFLRKS 1064 (1255)
Q Consensus 989 ~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilDg-AHNP~S~~a~l~~l~~~~ 1064 (1255)
.|++ +.+.++|.+|+ +|+|||.+... ++.||.|. |.||++..+++..|.
T Consensus 291 ------------------------~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~--- 343 (448)
T COG0771 291 ------------------------LGVPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFD--- 343 (448)
T ss_pred ------------------------cCCCHHHHHHHHHhCCCCCcceEEEEecCCEEEecCCCCCCHHHHHHHHHcCC---
Confidence 4566 67999999999 99999999864 78889995 999999999998664
Q ss_pred ccccCCCcccCCCCCcEEEEEe-cCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc--cccccCC
Q psy15432 1065 EAEANPTQSKSSNVIQRILVFN-VTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST--VQSINIS 1141 (1255)
Q Consensus 1065 ~~~~~~~~~~~~~~~~~vlVfg-~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~ 1141 (1255)
+++++|.| ..++-|...+.+.+ + ...-.+++-+.....-.... +.- ......+
T Consensus 344 --------------~~v~lI~GG~~Kg~df~~L~~~~-~-~~~~~~~~~G~~~~~i~~~l--------~~~~~~~~~~~~ 399 (448)
T COG0771 344 --------------GPVILIAGGDDKGADFSPLAEIL-A-KVIKKLVLIGEDAEKIAAAL--------KEAGPSLVICET 399 (448)
T ss_pred --------------CCEEEEECCCCCCCChhHHHHHh-h-hcceEEEEeCCCHHHHHHHH--------HhcCCceeecCc
Confidence 25777776 33334566655555 3 22333555454422221111 111 1234457
Q ss_pred HHHHHHHHHHHcCC-CceEEeecCCCCCCccccccccccc
Q psy15432 1142 LAIQLAYLWMFRMN-KSAELKRNQSSLPMGPHFEIDPKTY 1180 (1255)
Q Consensus 1142 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~ 1180 (1255)
.++..+.++...++ +.+.|.+++.|++|.+.|+.=-..+
T Consensus 400 le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F 439 (448)
T COG0771 400 LEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEF 439 (448)
T ss_pred HHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHH
Confidence 78888888777766 5678889999999998776543333
No 70
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.97 E-value=4.8e-29 Score=318.45 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=177.5
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|+++..+. .. .+|.++..
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG---------~~g~~~~~--------------------------- 147 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GG---------LNQEGLNG--------------------------- 147 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CC---------cccccccc---------------------------
Confidence 699999999999999999999999998643332 11 12333221
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~~v 265 (1255)
...+.|++|+|+|+.. -+ +. ..+|+++|||||+.||+|+++.|+++|+.+|.-+++ ++..+|
T Consensus 148 ------------~~~~~d~~V~E~ss~~-~~-~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 148 ------------YSGSSEYFVAEADESD-GS-LK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred ------------ccCCCCEEEEECCCCc-ch-hh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1124699999999872 22 22 238999999999999999884399999999988864 345567
Q ss_pred eccCCCchHHHHHHHhhhcc----CceE----EEcCCc-ceeee--cC---cccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 266 TSANQRGPCKQILLETSRAL----NCVL----LEAPSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~----~~~l----~~~~~~-~~~~~--~~---~~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
++. +++....... .... .+.+ +..... ..+.+ .+ ..+.++++|.||..|+++|++++..+
T Consensus 213 ~N~-Dd~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l--- 286 (809)
T PRK14573 213 YNG-DCPRLKGCLQ--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTL--- 286 (809)
T ss_pred EeC-CCHHHHhhcc--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHc---
Confidence 776 4443322110 0000 0010 000100 01211 11 23567899999999999999988654
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ .+.+.+||
T Consensus 287 --------------------------------------------------------------------gi~-~~~i~~~L 297 (809)
T PRK14573 287 --------------------------------------------------------------------GID-EGAIRNAL 297 (809)
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 556 89999999
Q ss_pred hcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCC
Q psy15432 412 KACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGE 489 (1255)
Q Consensus 412 ~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~d 489 (1255)
++|. ||||||++.. +++.||+||||||+|+++++++++..... +|+++||+.-.+
T Consensus 298 ~~f~~~~~R~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~~-----------------------~rli~vf~~~~~ 354 (809)
T PRK14573 298 KGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVGL-----------------------RRIIAICQPHRF 354 (809)
T ss_pred HhCCCCCCCCEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcCC-----------------------CEEEEEEcCCcc
Confidence 9999 9999999975 45789999999999999999999865322 278899964333
Q ss_pred CChhhhhHHhhc-cCCCcEEEEcCCCCCCCC
Q psy15432 490 RDPTKLLSPLLQ-SNQFEYILVTPNILTNES 519 (1255)
Q Consensus 490 rD~~~ll~~L~~-~~~~d~vi~t~~~~~~~~ 519 (1255)
+....++..+.. -..+|.+++|+.++..|.
T Consensus 355 ~~~~~~~~~~~~~l~~~d~vilt~~~~~~e~ 385 (809)
T PRK14573 355 SRLRECLDSFPSAFQDADEVILTDVYSAGEE 385 (809)
T ss_pred hhHHHHHHHHHHHHHHCCEEEECCccCCCCC
Confidence 333333322211 124899999988776665
No 71
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=8.3e-29 Score=297.08 Aligned_cols=214 Identities=21% Similarity=0.275 Sum_probs=155.2
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||++|+.+||+.+|+++.+-++. |.|..
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~l--------------------------- 144 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GVPAL--------------------------- 144 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CHHHh---------------------------
Confidence 479999999999999999999999999987554432 22211
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC---Ccee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~---g~~~ 264 (1255)
. ...+.|++|+|+|+... +.+..+ +|++++||||+.||+|+|| |+|+|+.+|..||+. +..+
T Consensus 145 -----~-------~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~~~~ 209 (454)
T PRK01368 145 -----Q-------AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMDKDSYA 209 (454)
T ss_pred -----c-------ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 0 12335999999999864 334433 7999999999999999999 999999999999953 4556
Q ss_pred eeccCCCchHHHHHHHhhhccCce--EEEcCC--cc-------e--eee--c---CcccccCCCchhHHhhHHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCV--LLEAPS--IL-------N--YRW--R---GQPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~--l~~~~~--~~-------~--~~~--~---~~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
|++. +++.......+......+. .|.... .. . +.+ . ...+.++++|.||..|+++|++++.
T Consensus 210 Vln~-Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~ 288 (454)
T PRK01368 210 VINI-DNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAK 288 (454)
T ss_pred EEeC-CcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHH
Confidence 7776 4444433222211111111 122110 00 0 011 0 1135568899999999999999887
Q ss_pred HHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHH
Q psy15432 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPK 406 (1255)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~ 406 (1255)
.+ +++ .+.
T Consensus 289 ~l-----------------------------------------------------------------------gi~-~~~ 296 (454)
T PRK01368 289 II-----------------------------------------------------------------------GVE-PKK 296 (454)
T ss_pred Hc-----------------------------------------------------------------------CCC-HHH
Confidence 54 556 889
Q ss_pred HHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHH
Q psy15432 407 TYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWF 448 (1255)
Q Consensus 407 i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l 448 (1255)
|.++|++|. ||||||++.. +++.||+| +||||+|+.+++++|
T Consensus 297 i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~atN~~a~~~al~~~ 341 (454)
T PRK01368 297 ILESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAVQSIKAL 341 (454)
T ss_pred HHHHHHhCCCCCcceEEEEEECCeEEEECCCCCCHHHHHHHHHhc
Confidence 999999988 9999999976 57789999 999999999988876
No 72
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=2.7e-28 Score=293.34 Aligned_cols=304 Identities=17% Similarity=0.132 Sum_probs=204.9
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|+||||||||||++|+++||+..|+++..-++ | |.|+... +.
T Consensus 117 ~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn---------i---G~p~~~~------------~~----------- 161 (458)
T PRK01710 117 AKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN---------I---GTPLFSN------------IE----------- 161 (458)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc---------c---ChhHHHH------------Hh-----------
Confidence 47999999999999999999999999988743222 2 4443210 00
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~a 876 (1255)
...+.|++|+|+|+...-+. .+ +|+++|||||+.||++++| |+|+|+.+|..|++ +++.+
T Consensus 162 -------------~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~~ 224 (458)
T PRK01710 162 -------------EIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDLL 224 (458)
T ss_pred -------------hCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 11257999999999843332 23 7999999999999999999 99999999999985 56788
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCc-----cc------eeccC----CccccCCCchhHHHHHHHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSI-----LN------YRWRG----QPLDEDWKSTVQSINISLAIQLAYLWM 941 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-----~~------~~~~~----~~v~l~L~G~hq~~Na~lAiala~~~l 941 (1255)
|++. + ++....+...+ ..+++.++.. .. +...+ ..+.++++|.||++|+++|++++..
T Consensus 225 v~n~-D-d~~~~~~~~~~---~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~-- 297 (458)
T PRK01710 225 VLNK-D-NEITNGMEKEA---KGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVND-- 297 (458)
T ss_pred EEeC-C-cHHHHHHHhhc---CCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHh--
Confidence 8887 4 44333232222 1223333210 00 11111 1356889999999999999998764
Q ss_pred HhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHH
Q psy15432 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTY 1020 (1255)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~ 1020 (1255)
. ++ +.+.
T Consensus 298 -----------------------------------------------------------------------~-i~~~~i~ 305 (458)
T PRK01710 298 -----------------------------------------------------------------------D-VSIESMK 305 (458)
T ss_pred -----------------------------------------------------------------------C-CCHHHHH
Confidence 2 45 6799
Q ss_pred HHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec-CCCCChhhh
Q psy15432 1021 RGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV-TGERDPTKL 1096 (1255)
Q Consensus 1021 ~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~-~~drD~~~l 1096 (1255)
++|++|+ .+||||.+.. ++.++|.| |||||+||.++++.+. .++++|+|- ..+.+++++
T Consensus 306 ~~L~~f~~~~~R~e~~~~~~g~~~i~Dsy~~np~s~~~al~~~~-----------------~~~i~IlGg~~~~~~~~~l 368 (458)
T PRK01710 306 KVATTFSGVEHRCEFVREINGVKYYNDSIASSPTRTLAGLKAFE-----------------KPVILIAGGYDKKIPFEPL 368 (458)
T ss_pred HHHHhCCCCCcceEEEEEECCEEEecccccCCHHHHHHHHHhCC-----------------CCEEEEeCCcCCCCCHHHH
Confidence 9999999 9999999874 67778888 9999999999998652 246888873 122345555
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc-ccccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCccccc
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS-TVQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 1174 (1255)
.+.+ . ..+|.+++++...........+-.. .... ....+..+.++.++.+.....+. .+.+..++.|++|-+-|+
T Consensus 369 ~~~~-~-~~~~~vi~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~ 445 (458)
T PRK01710 369 AEEG-Y-EKIKTLILMGATKNKIKEAFEKVIS-EKGIDIPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFE 445 (458)
T ss_pred HHHH-H-hhccEEEEECCCHHHHHHHHhhccc-ccCCCcceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHH
Confidence 5544 3 4489999998765432211100000 0000 01223457888888887766664 556667889999985544
No 73
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=8e-28 Score=286.11 Aligned_cols=306 Identities=16% Similarity=0.125 Sum_probs=207.5
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhh
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~ 778 (1255)
.+.++..++..+.. .+.++|+||||||||||++|+++||+..|.++.+.++. |.|+
T Consensus 86 vv~~~~~~~~~~~~-----~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gni------------G~p~------- 141 (418)
T PRK00683 86 VVTDIQLAFQTPEF-----TRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNI------------GIPI------- 141 (418)
T ss_pred EEEHHHHHHhhhhc-----CCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCc------------CHHH-------
Confidence 56777766665421 12479999999999999999999999999888777763 4442
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCC
Q psy15432 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNT 858 (1255)
Q Consensus 779 ~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~T 858 (1255)
+. ...+.|++|+|+|+.+.-+.-..++.|+++|||||+.||+++|| |
T Consensus 142 --------l~------------------------~~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s 188 (418)
T PRK00683 142 --------LD------------------------GMQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-N 188 (418)
T ss_pred --------HH------------------------HhhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-C
Confidence 00 11236899999999965443334445689999999999999999 9
Q ss_pred HHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEEc-CCccceeccCCccccCCCchhHHHHHHHHHHHH
Q psy15432 859 IEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA-PSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 937 (1255)
Q Consensus 859 leeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~-~~~~~~~~~~~~v~l~L~G~hq~~Na~lAiala 937 (1255)
+|+|+.+|+.|+.. +.+. ++.... . ....+...... ......... ...++++|.||.+|+++|++++
T Consensus 189 ~e~y~~aK~~i~~~----~~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~hn~~Na~aA~a~~ 256 (418)
T PRK00683 189 LSAYFQAKQNIAKC----LRNP--DDLWVG---D-ERSYGHSYLEYVQEIMRLLDK--GSALKPLYLHDRYNYCAAYALA 256 (418)
T ss_pred HHHHHHHHHHHHHh----hhCc--cccccc---c-cCCcCceeecCcchhhhhhcc--ccccCCCccchHHHHHHHHHHH
Confidence 99999999999852 1111 111000 0 00000000000 000000001 1246788999999999999987
Q ss_pred HHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-
Q psy15432 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID- 1016 (1255)
Q Consensus 938 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~- 1016 (1255)
..+ +|++
T Consensus 257 ~~l------------------------------------------------------------------------~g~~~ 264 (418)
T PRK00683 257 NEV------------------------------------------------------------------------FPISE 264 (418)
T ss_pred HHh------------------------------------------------------------------------cCCCH
Confidence 751 2456
Q ss_pred HHHHHHHhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEe-cCCCCC
Q psy15432 1017 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFN-VTGERD 1092 (1255)
Q Consensus 1017 ~~i~~gL~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg-~~~drD 1092 (1255)
+++.+||+++. ||||||++.. ++..+|.| |++||+|++++++.+. +++++||| +..++|
T Consensus 265 ~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al~~~~-----------------~~~i~vlG~~~~~~d 327 (418)
T PRK00683 265 ESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAVG-----------------NQVIVILGGRNKGCD 327 (418)
T ss_pred HHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHHHhCC-----------------CCEEEEEcCCCCCCC
Confidence 67999999997 9999999975 56778888 8999999999987431 36799999 577789
Q ss_pred hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccc-cccccCCHHHHHHHHHHHcCCC-ceEEeecCCCCCCc
Q psy15432 1093 PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKST-VQSINISLAIQLAYLWMFRMNK-SAELKRNQSSLPMG 1170 (1255)
Q Consensus 1093 ~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 1170 (1255)
.+.+++.+ . ...|.+++++......... +... ...+..+.++.++.+.....+. .+.+..|+.|++|-
T Consensus 328 ~~~l~~~~-~-~~~~~v~~~G~~~~~i~~~--------l~~~~~~~~~~~~~~a~~~~~~~~~~gd~VLlsp~~~s~d~f 397 (418)
T PRK00683 328 FSSLLPVL-R-QTAKHVVAMGECRQEIAQA--------LSEKFPLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQF 397 (418)
T ss_pred HHHHHHHH-H-HhCCEEEEECCCHHHHHHH--------HhcCCCEEEeCCHHHHHHHHHHhCCCCCEEEECchhcccccc
Confidence 98888887 3 3488899887442211111 1110 1233457888888887766555 45559999999987
Q ss_pred cc
Q psy15432 1171 PH 1172 (1255)
Q Consensus 1171 ~~ 1172 (1255)
+-
T Consensus 398 ~~ 399 (418)
T PRK00683 398 RS 399 (418)
T ss_pred cC
Confidence 43
No 74
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.4e-26 Score=272.93 Aligned_cols=218 Identities=17% Similarity=0.234 Sum_probs=164.7
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
..|+|+||||||||||++|+++||+++|+++.+-+.. |.|..+
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------------G~p~l~------------------------- 151 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------------GTPALE------------------------- 151 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc------------CccHHH-------------------------
Confidence 3469999999999999999999999999988775543 233221
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc-eee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC-IAV 265 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~-~~v 265 (1255)
++. .....|+.|+|+++-..-..-++ +|.+++||||+.||+|||| ++++|...|+.|++... .+|
T Consensus 152 ----~~~-------~~~~~d~~VlElSSfQL~~~~~~--~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~V 217 (448)
T COG0771 152 ----LLE-------QAEPADVYVLELSSFQLETTSSL--RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAV 217 (448)
T ss_pred ----hhc-------ccCCCCEEEEEccccccccCccC--CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEE
Confidence 000 13578999999999976666666 8999999999999999999 99999999999998777 566
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCc---ceeeecCc----------ccccCCCchhHHhhHHHHHHHHHHHHHhh
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSI---LNYRWRGQ----------PLDEDWKSTVQSINISLAIQLAYLWMFRM 332 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~---~~~~~~~~----------~i~l~l~G~~q~~Na~lAia~a~~~l~~~ 332 (1255)
++. |++....+...........+..... ..|...+. .-.++++|.||..|+++|+++|+..
T Consensus 218 in~--dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~---- 291 (448)
T COG0771 218 INA--DDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL---- 291 (448)
T ss_pred EeC--CcHHHhhhhhhcccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc----
Confidence 665 4444433333322212222332221 11111111 2368999999999999999999765
Q ss_pred ccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHh
Q psy15432 333 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIK 412 (1255)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~ 412 (1255)
|++ ++++.++|+
T Consensus 292 -------------------------------------------------------------------gv~-~e~i~~~L~ 303 (448)
T COG0771 292 -------------------------------------------------------------------GVP-PEAILEALS 303 (448)
T ss_pred -------------------------------------------------------------------CCC-HHHHHHHHH
Confidence 667 999999999
Q ss_pred cCC-CCCceEEEEe-cCcEEEEcc-CCCHHHHHHHHHHHH
Q psy15432 413 ACV-WPGRVQVIRK-NNFKYFLDG-AHTTDSIELCAKWFL 449 (1255)
Q Consensus 413 ~~~-~pGR~e~v~~-~~~~vilDg-AHnp~si~~~l~~l~ 449 (1255)
+|+ +|+|||.+.. +++.||.|. |.|+++..+++..|.
T Consensus 304 ~F~gl~HR~e~v~~~~gv~f~NDSKATN~~At~~AL~~~~ 343 (448)
T COG0771 304 SFTGLPHRLEFVGEKDGVLFINDSKATNVDATLAALSGFD 343 (448)
T ss_pred hCCCCCcceEEEEecCCEEEecCCCCCCHHHHHHHHHcCC
Confidence 999 9999999986 578899996 999999999987664
No 75
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=4.6e-26 Score=265.93 Aligned_cols=276 Identities=17% Similarity=0.165 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHH
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWT 170 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~ 170 (1255)
=.++|+.|-... ..|+||||+|||||++|+++||.++|+..++... |.+-.-..-+
T Consensus 96 r~e~Laelm~~~------~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG-------------G~~~~~g~na----- 151 (459)
T COG0773 96 RAEMLAELMRFR------TSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG-------------GILKNFGTNA----- 151 (459)
T ss_pred HHHHHHHHHhCC------eeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC-------------cccccCCccc-----
Confidence 345666665543 6999999999999999999999999987665433 3221111100
Q ss_pred HHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHH
Q psy15432 171 VYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEI 250 (1255)
Q Consensus 171 v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~I 250 (1255)
....-++.|.|+ .++|+.-+-.+|.++|||||..||+|++| ++++|
T Consensus 152 ------------------------------~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i 197 (459)
T COG0773 152 ------------------------------RLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAI 197 (459)
T ss_pred ------------------------------ccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHH
Confidence 112338999998 78898888779999999999999999999 99999
Q ss_pred HHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcceee----------------ecC---cccccC
Q psy15432 251 TMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYR----------------WRG---QPLDED 308 (1255)
Q Consensus 251 a~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~~~----------------~~~---~~i~l~ 308 (1255)
..+...+++ ..+.+|++. +|+...+++...+. .....|..+...++. ..+ .++.++
T Consensus 198 ~~~F~~f~~~vp~~G~~v~~~-dd~~l~~l~~~~~~-~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~ 275 (459)
T COG0773 198 KQAFHHFVRNVPFYGRAVVCG-DDPNLRELLSRGCW-SPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLP 275 (459)
T ss_pred HHHHHHHHHhCCccceEEEEC-CCHHHHHHHhcccC-CcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEc
Confidence 888777763 445567776 56655555543322 112233333111221 111 257899
Q ss_pred CCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCc
Q psy15432 309 WKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHL 388 (1255)
Q Consensus 309 l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1255)
++|.||+.||++|+++|..+
T Consensus 276 ~pG~HNvlNAlaaia~a~~~------------------------------------------------------------ 295 (459)
T COG0773 276 LPGRHNVLNALAAIAVAREL------------------------------------------------------------ 295 (459)
T ss_pred CCchhhHHHHHHHHHHHHHc------------------------------------------------------------
Confidence 99999999999999999765
Q ss_pred cccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCC
Q psy15432 389 TGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCP 466 (1255)
Q Consensus 389 ~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~ 466 (1255)
|++ .++|+++|++|+ +..|||+... +++++|.||||+|..+.+.++.+|+..+.
T Consensus 296 -----------Gi~-~~~i~~aL~~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~~------------ 351 (459)
T COG0773 296 -----------GID-PEAIAEALASFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVPG------------ 351 (459)
T ss_pred -----------CCC-HHHHHHHHHhCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcCC------------
Confidence 677 999999999999 9999997764 57889999999999999999999987653
Q ss_pred CCCCccCCCCCccEEEEEecCCCCChhhhhHHhh-ccCCCcEEEEcCCCCCCCCC
Q psy15432 467 LDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-QSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 467 ~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~ 520 (1255)
.+|+++||-.-.-.-...++..+. +-..+|.|++++-.+-.|.+
T Consensus 352 ----------~~rIvaifQPHrySRt~~~~~dF~~~l~~AD~v~l~~VY~A~e~~ 396 (459)
T COG0773 352 ----------GKRIVAVFQPHRYSRTRDLLDDFAKALSDADEVILLDVYAAGEEP 396 (459)
T ss_pred ----------CceEEEEECCCchHhHHHHHHHHHHHHhcCCEEEEecccccCCCC
Confidence 128999997543322223333332 12568999999866665553
No 76
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.95 E-value=1.1e-26 Score=278.00 Aligned_cols=246 Identities=16% Similarity=0.147 Sum_probs=175.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||+.|+++||+.+|.++++-++- |.|.
T Consensus 109 ~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G~~~----------------------------- 147 (438)
T PRK04663 109 PVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------GVPA----------------------------- 147 (438)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------CHHH-----------------------------
Confidence 79999999999999999999999999987654431 1111
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
+. ....+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..|++....+|++.
T Consensus 148 ---~~------~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n~ 215 (438)
T PRK04663 148 ---LD------LLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVNR 215 (438)
T ss_pred ---Hh------hhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEeC
Confidence 00 024567999999999974 234444 7999999999999999999 99999999999998755677776
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCC---------cceeeec-Cc----ccccCCCchhHHhhHHHHHHHHHHHHHhhcc
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPS---------ILNYRWR-GQ----PLDEDWKSTVQSINISLAIQLAYLWMFRMNK 334 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~---------~~~~~~~-~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~ 334 (1255)
+++...... . ...+..|.... ...+... +. .+.++++|.||++|+++|++++..+
T Consensus 216 -dd~~~~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l------ 284 (438)
T PRK04663 216 -DDKQTYPDH-A---ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA------ 284 (438)
T ss_pred -CCHHHHhhh-c---CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc------
Confidence 444322211 1 11111222110 0111111 11 3678999999999999999988765
Q ss_pred chhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcC
Q psy15432 335 SAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKAC 414 (1255)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~ 414 (1255)
|++ +++|.++|++|
T Consensus 285 -----------------------------------------------------------------Gi~-~~~i~~~L~~f 298 (438)
T PRK04663 285 -----------------------------------------------------------------GVD-YRKALDALKSY 298 (438)
T ss_pred -----------------------------------------------------------------CCC-HHHHHHHHHhC
Confidence 667 89999999999
Q ss_pred C-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCC-CC
Q psy15432 415 V-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTG-ER 490 (1255)
Q Consensus 415 ~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~-dr 490 (1255)
+ +|||||++.. +++.+|.| +++||+|+.++++.+. .. .++|+|+|.+. ..
T Consensus 299 ~g~~~R~e~v~~~~g~~~idDs~~tn~~s~~~Al~~~~---~~-----------------------~~~i~IlGg~~~~~ 352 (438)
T PRK04663 299 TGLTHRCQVVADNHGIKWVNDSKATNVASTLAALSGLE---IE-----------------------GKLYLLVGGVGKGA 352 (438)
T ss_pred CCCCCceEEeeeeCCcEEEeCCCcCCHHHHHHHHHhcc---cC-----------------------CcEEEEECCccCCC
Confidence 9 9999999975 46666776 6899999999988763 11 16899999773 34
Q ss_pred ChhhhhHHhhccCCCcEEEEcC
Q psy15432 491 DPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 491 D~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
|...+.+.+ ... .+.|++..
T Consensus 353 ~~~~l~~~~-~~~-~~~vi~~G 372 (438)
T PRK04663 353 DFSPLKPVL-ATL-NLQLCCFG 372 (438)
T ss_pred CHHHHHHHH-Hhh-CcEEEEEC
Confidence 777766666 322 24666653
No 77
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.95 E-value=1.1e-26 Score=296.70 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=174.1
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+.+||+++|++...+. .+ .+|.|+..
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG---------~~g~~~~~--------------------------- 147 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GG---------LNQEGLNG--------------------------- 147 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CC---------cccccccc---------------------------
Confidence 699999999999999999999999998643332 11 12333321
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av 877 (1255)
...+.|++|+|+|+.. -+.. . .+|+++|||||+.||+++++.|+|+|+.+|..+++ ++..+|
T Consensus 148 ------------~~~~~d~~V~E~ss~~-~~~~-~-~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 148 ------------YSGSSEYFVAEADESD-GSLK-H-YTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred ------------ccCCCCEEEEECCCCc-chhh-e-eecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1124699999999872 2222 2 37999999999999999884499999999988874 456788
Q ss_pred EccCCCChhHHHHHHHhhhc----CCeEE----EcCCc-cceec--cC---CccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 878 TSANQRGPCKQILLETSRAL----NCVLL----EAPSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~----~~~l~----~~~~~-~~~~~--~~---~~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
++. +++....... .... .+.+. ..... ..+.+ .+ ..+.++++|.||..|+++|++++..
T Consensus 213 ~N~-Dd~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~---- 285 (809)
T PRK14573 213 YNG-DCPRLKGCLQ--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALT---- 285 (809)
T ss_pred EeC-CCHHHHhhcc--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHH----
Confidence 887 4432222110 0000 01110 00100 01111 11 2356789999999999999998865
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +.+.+|
T Consensus 286 ---------------------------------------------------------------------lgi~~~~i~~~ 296 (809)
T PRK14573 286 ---------------------------------------------------------------------LGIDEGAIRNA 296 (809)
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4566 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPL 1100 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L 1100 (1255)
|++|. ||||||++.. +++.+|+||||||+|+++++++++.... .+++++||+.-.++....++..+
T Consensus 297 L~~f~~~~~R~e~~~~~~~~~~i~D~ahnP~~~~a~l~~l~~~~~------------~~rli~vf~~~~~~~~~~~~~~~ 364 (809)
T PRK14573 297 LKGFSGVQRRLERKNSSETFLFLEDYAHHPSEISCTLRAVRDAVG------------LRRIIAICQPHRFSRLRECLDSF 364 (809)
T ss_pred HHhCCCCCCCCEEEeccCCcEEEEECCCCHHHHHHHHHHHHhhcC------------CCEEEEEEcCCcchhHHHHHHHH
Confidence 99999 9999999976 4568999999999999999999986431 24678899644443333333322
Q ss_pred hc-CCCCcEEEEcCCCCc
Q psy15432 1101 LQ-SNQFEYILVTPNILT 1117 (1255)
Q Consensus 1101 ~~-~~~~d~vi~t~~~~~ 1117 (1255)
.. -..+|.+++|+..+.
T Consensus 365 ~~~l~~~d~vilt~~~~~ 382 (809)
T PRK14573 365 PSAFQDADEVILTDVYSA 382 (809)
T ss_pred HHHHHHCCEEEECCccCC
Confidence 10 123899999887653
No 78
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.95 E-value=4.5e-26 Score=274.20 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=174.1
Q ss_pred CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 107 ~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+.++|+||||||||||+.|+.+||+..|+++.+-++ | |.|+.
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn---------i---G~p~~-------------------------- 157 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN---------I---GTPLF-------------------------- 157 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc---------c---ChhHH--------------------------
Confidence 347999999999999999999999999988643222 1 22221
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCce
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCI 263 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~ 263 (1255)
..+. .....|++|+|+|+....+. .+ +|+++|||||+.||+++|| |+|+|+.+|..|++ ++..
T Consensus 158 ---~~~~-------~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~ 223 (458)
T PRK01710 158 ---SNIE-------EIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDL 223 (458)
T ss_pred ---HHHh-------hCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0000 11257999999999844332 23 7999999999999999999 99999999999985 4556
Q ss_pred eeeccCCCchHHHHHHHhhhccCceEEEcCCc---ce------eeecC----cccccCCCchhHHhhHHHHHHHHHHHHH
Q psy15432 264 AVTSANQRGPCKQILLETSRALNCVLLEAPSI---LN------YRWRG----QPLDEDWKSTVQSINISLAIQLAYLWMF 330 (1255)
Q Consensus 264 ~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~---~~------~~~~~----~~i~l~l~G~~q~~Na~lAia~a~~~l~ 330 (1255)
+|++. +++ ....+...+.. .+..+..... .. +.+.+ ..+.++++|.||++|+++|++++..
T Consensus 224 ~v~n~-Dd~-~~~~~~~~~~~-~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~--- 297 (458)
T PRK01710 224 LVLNK-DNE-ITNGMEKEAKG-DVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVND--- 297 (458)
T ss_pred EEEeC-CcH-HHHHHHhhcCC-cEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHh---
Confidence 77776 444 33333322211 1122222110 01 11111 1367899999999999999987743
Q ss_pred hhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHH
Q psy15432 331 RMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRG 410 (1255)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~g 410 (1255)
.++ ++.+.++
T Consensus 298 ---------------------------------------------------------------------~i~-~~~i~~~ 307 (458)
T PRK01710 298 ---------------------------------------------------------------------DVS-IESMKKV 307 (458)
T ss_pred ---------------------------------------------------------------------CCC-HHHHHHH
Confidence 234 8899999
Q ss_pred HhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC
Q psy15432 411 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT 487 (1255)
Q Consensus 411 L~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~ 487 (1255)
|++|+ .+||||++.. ++.++|.| |+|||+|+.++++.+.. ++++|+|-.
T Consensus 308 L~~f~~~~~R~e~~~~~~g~~~i~Dsy~~np~s~~~al~~~~~----------------------------~~i~IlGg~ 359 (458)
T PRK01710 308 ATTFSGVEHRCEFVREINGVKYYNDSIASSPTRTLAGLKAFEK----------------------------PVILIAGGY 359 (458)
T ss_pred HHhCCCCCcceEEEEEECCEEEecccccCCHHHHHHHHHhCCC----------------------------CEEEEeCCc
Confidence 99999 9999999874 67788888 99999999999875521 478888832
Q ss_pred -CCCChhhhhHHhhccCCCcEEEEcCC
Q psy15432 488 -GERDPTKLLSPLLQSNQFEYILVTPN 513 (1255)
Q Consensus 488 -~drD~~~ll~~L~~~~~~d~vi~t~~ 513 (1255)
.+.++.++.+.+ + ...|.||++..
T Consensus 360 ~~~~~~~~l~~~~-~-~~~~~vi~~G~ 384 (458)
T PRK01710 360 DKKIPFEPLAEEG-Y-EKIKTLILMGA 384 (458)
T ss_pred CCCCCHHHHHHHH-H-hhccEEEEECC
Confidence 233677776665 3 44788888753
No 79
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.95 E-value=6.6e-26 Score=269.77 Aligned_cols=255 Identities=17% Similarity=0.170 Sum_probs=177.4
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
+.++..++..+.. .+.++|+||||||||||+.|+.+||+..|.++.+.++.. .|+
T Consensus 87 v~~~~~~~~~~~~-----~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG------------~p~-------- 141 (418)
T PRK00683 87 VTDIQLAFQTPEF-----TRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIG------------IPI-------- 141 (418)
T ss_pred EEHHHHHHhhhhc-----CCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcC------------HHH--------
Confidence 4555555554421 124799999999999999999999999998877777632 121
Q ss_pred HHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCH
Q psy15432 168 FWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTI 247 (1255)
Q Consensus 168 ~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tl 247 (1255)
+..+ .+.|++|+|+|+.+.-+.-..++.|+++|||||+.||+++|| |+
T Consensus 142 ------------------------l~~~-------~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s~ 189 (418)
T PRK00683 142 ------------------------LDGM-------QQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-NL 189 (418)
T ss_pred ------------------------HHHh-------hcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-CH
Confidence 1111 236899999999965444445545689999999999999999 99
Q ss_pred HHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEEE-cCCcceeeecCcccccCCCchhHHhhHHHHHHHHH
Q psy15432 248 EEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE-APSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 248 e~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~-~~~~~~~~~~~~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
|+|+.+|+.|+.. +.+. ++.... . ....+..... .......... ...++++|.||.+|+++|++++.
T Consensus 190 e~y~~aK~~i~~~----~~~~--~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~hn~~Na~aA~a~~~ 257 (418)
T PRK00683 190 SAYFQAKQNIAKC----LRNP--DDLWVG---D-ERSYGHSYLEYVQEIMRLLDK--GSALKPLYLHDRYNYCAAYALAN 257 (418)
T ss_pred HHHHHHHHHHHHh----hhCc--cccccc---c-cCCcCceeecCcchhhhhhcc--ccccCCCccchHHHHHHHHHHHH
Confidence 9999999999852 1111 111000 0 0000000000 0000000001 12457889999999999999887
Q ss_pred HHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHH
Q psy15432 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPK 406 (1255)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~ 406 (1255)
.++ +++ .++
T Consensus 258 ~l~----------------------------------------------------------------------g~~-~~~ 266 (418)
T PRK00683 258 EVF----------------------------------------------------------------------PIS-EES 266 (418)
T ss_pred Hhc----------------------------------------------------------------------CCC-HHH
Confidence 621 556 899
Q ss_pred HHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEE
Q psy15432 407 TYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILV 483 (1255)
Q Consensus 407 i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV 483 (1255)
+.++|+++. ||||||++.. ++..+|.| |++||+|+.++++.+. +++++|
T Consensus 267 i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al~~~~----------------------------~~~i~v 318 (418)
T PRK00683 267 FLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKALLAVG----------------------------NQVIVI 318 (418)
T ss_pred HHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHHHhCC----------------------------CCEEEE
Confidence 999999997 9999999975 56788888 8999999999887431 168999
Q ss_pred Ee-cCCCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 484 FN-VTGERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 484 fg-~~~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
|| ...++|+.++++.+ . ...|.|+++.
T Consensus 319 lG~~~~~~d~~~l~~~~-~-~~~~~v~~~G 346 (418)
T PRK00683 319 LGGRNKGCDFSSLLPVL-R-QTAKHVVAMG 346 (418)
T ss_pred EcCCCCCCCHHHHHHHH-H-HhCCEEEEEC
Confidence 99 56788998888888 3 4488998883
No 80
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=3.5e-25 Score=258.62 Aligned_cols=301 Identities=16% Similarity=0.145 Sum_probs=212.1
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
..|+||||+|||||++|+++||.++|+.+++. |+|.+=.-.. .
T Consensus 108 ~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~-------------iGG~~~~~g~---n--------------------- 150 (459)
T COG0773 108 TSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-------------IGGILKNFGT---N--------------------- 150 (459)
T ss_pred eeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE-------------ECcccccCCc---c---------------------
Confidence 68999999999999999999999999877655 3333211000 0
Q ss_pred HHHHHHHHHHhhhc-CCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceE
Q psy15432 801 FKFLTVMSFYVFVK-EKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 876 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~-~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~a 876 (1255)
.. ..-++.|.|. -++|+.-+--+|.++|||||..||+|++| ++++|-.+...++ +..+.+
T Consensus 151 ------------a~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp~~G~~ 214 (459)
T COG0773 151 ------------ARLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVPFYGRA 214 (459)
T ss_pred ------------cccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCCccceE
Confidence 12 2238999999 89999888889999999999999999999 9999988877776 355667
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--ce----------------eccC---CccccCCCchhHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSIL--NY----------------RWRG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--~~----------------~~~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
|++. +|+...+++...+ +++++.++... ++ ...+ .++.++++|+||+.||++|++
T Consensus 215 v~~~-dd~~l~~l~~~~~---~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia 290 (459)
T COG0773 215 VVCG-DDPNLRELLSRGC---WSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIA 290 (459)
T ss_pred EEEC-CCHHHHHHHhccc---CCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHH
Confidence 7777 5555555454322 34444443221 11 1111 257899999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
+|.. +|+
T Consensus 291 ~a~~-------------------------------------------------------------------------~Gi 297 (459)
T COG0773 291 VARE-------------------------------------------------------------------------LGI 297 (459)
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 9886 567
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCC
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERD 1092 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD 1092 (1255)
+ +.|+++|++|+ +..|||++.. +++++|.||||+|..+++.++.++.... ..+++|+||-.-.-.-
T Consensus 298 ~~~~i~~aL~~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~-----------~~~rIvaifQPHrySR 366 (459)
T COG0773 298 DPEAIAEALASFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVP-----------GGKRIVAVFQPHRYSR 366 (459)
T ss_pred CHHHHHHHHHhCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcC-----------CCceEEEEECCCchHh
Confidence 6 77999999999 9999997765 5677888899999999999999998652 1257888986433322
Q ss_pred hhhhhhhhh-cCCCCcEEEEcCCCCcccccccCCCCCcccccc-------ccccc--CCHHHHHHHHHHHcCCCceEEee
Q psy15432 1093 PTKLLSPLL-QSNQFEYILVTPNILTNEIRWRGQPLDEDWKST-------VQSIN--ISLAIQLAYLWMFRMNKSAELKR 1162 (1255)
Q Consensus 1093 ~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d-------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 1162 (1255)
...+++... +-..+|.|++++-.+..+.+. ..+|++. +..+. .+.++....+-...++.+++|.-
T Consensus 367 t~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~-----~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~gD~il~m 441 (459)
T COG0773 367 TRDLLDDFAKALSDADEVILLDVYAAGEEPI-----EGDVSSEDLAEKIRQPGHVDVPDLDDLVELLAKVAQPGDVILFM 441 (459)
T ss_pred HHHHHHHHHHHHhcCCEEEEecccccCCCCC-----cCCccHHHHHHHhhcCCcccCCCHHHHHHHHHhhCCCCCEEEEe
Confidence 223333332 124589999998555444322 2334441 11222 25667777777777888888887
Q ss_pred cCCCC
Q psy15432 1163 NQSSL 1167 (1255)
Q Consensus 1163 ~~~~~ 1167 (1255)
|-.+.
T Consensus 442 GAGdi 446 (459)
T COG0773 442 GAGDI 446 (459)
T ss_pred cCCcH
Confidence 76654
No 81
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.91 E-value=2.4e-23 Score=246.22 Aligned_cols=287 Identities=15% Similarity=0.132 Sum_probs=187.0
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+.+|..+|- + | |.|++.
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~g--n---------i---G~p~~~--------------------------- 128 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGG--N---------I---GTPLAE--------------------------- 128 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEE--E---------e---cHhHHh---------------------------
Confidence 4899999999999999999999999843321 0 2 444321
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av 877 (1255)
...+.|++|+|+|+.+ +..+.++ +|+++|||||+.||++++| |+|+|+.+|..|++ ++..+|
T Consensus 129 ------------~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 129 ------------LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred ------------cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 1235699999998876 4556665 6999999999999999999 99999999999985 466788
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCccce----eccCCccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSILNY----RWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 953 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~~~----~~~~~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~ 953 (1255)
++. |++... . .++++.++....+ .+... .+.+.+.| ..|+++|++++..
T Consensus 194 ~n~--dd~~~~-----~---~~~~~~fg~~~~~~~~~~~~~~--~~~~~~~~-~~NalaA~a~a~~-------------- 246 (401)
T PRK03815 194 LPK--KFKNTP-----T---KAQKIFYEDEEDLAEKFGIDSE--KINFKGPF-LLDALLALAVYKI-------------- 246 (401)
T ss_pred Eec--cccccc-----c---CCcEEEEecCCccccceeEehH--hcCCchHH-HHHHHHHHHHHHH--------------
Confidence 876 333211 0 1233333211111 11101 12344554 9999999998876
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCCHHHHHHHhcCC-CCCcE
Q psy15432 954 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRV 1032 (1255)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~~~i~~gL~~~~-~pGR~ 1032 (1255)
+|+ +.+.++|++|+ .|+||
T Consensus 247 -----------------------------------------------------------~G~-~~~~~~L~~f~~~~~R~ 266 (401)
T PRK03815 247 -----------------------------------------------------------LFD-ELDYERLNAFKIGKHKL 266 (401)
T ss_pred -----------------------------------------------------------hCc-HHHHHHHHhCCCCCceE
Confidence 222 33457899999 99999
Q ss_pred EEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhhhhhcCCCCcEE
Q psy15432 1033 QVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLSPLLQSNQFEYI 1109 (1255)
Q Consensus 1033 E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~~L~~~~~~d~v 1109 (1255)
|++.. ++++||.| ++.||+|+..+++.+. + +++++|+|-.. +.+...+.+.+ .....+ +
T Consensus 267 e~~~~~~gv~~idDs~~tn~~a~~~al~~~~---------------~-~~ii~IlGG~~k~~~~~~l~~~~-~~~~~~-v 328 (401)
T PRK03815 267 EEFRDKQGRLWVDDSKATNVDATLQALKRYK---------------D-KKIHLILGGDDKGVDLTPLFEFM-KNLNIE-L 328 (401)
T ss_pred EEEEEECCEEEEECCCCCCHHHHHHHHHhCC---------------C-CCEEEEECCCCCCCCHHHHHHHH-HhhCcE-E
Confidence 99975 57777777 5999998888777541 1 35789998322 33555666666 333333 6
Q ss_pred EEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC-CceEEeecCCCCCCccccc
Q psy15432 1110 LVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN-KSAELKRNQSSLPMGPHFE 1174 (1255)
Q Consensus 1110 i~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 1174 (1255)
++.+............ . +....+..+.++.+..+.....+ +.+.|..++.|++|-+-|+
T Consensus 329 ~~~G~~~~~~~~~~~~-~-----~~~~~~~~~~e~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~ 388 (401)
T PRK03815 329 YAIGSNTEKIQALAKE-F-----NIKAFVCEFLEKAVEEIKKVLKQNEVALLSPAAASLDQFKSYK 388 (401)
T ss_pred EEECCCHHHHHHHHhc-C-----CCeEEEeCCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHH
Confidence 6665433211111000 0 00112334678877777665444 5677778899999985554
No 82
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.87 E-value=1.4e-21 Score=246.35 Aligned_cols=133 Identities=24% Similarity=0.348 Sum_probs=107.3
Q ss_pred ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 718 ~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
.++|+|+||||||||||++|+++||+.+|+++|+.+|.+ +.+|+..+.....+...
T Consensus 478 ~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G-------~~i~~~~i~~gd~t~p~----------------- 533 (727)
T PRK14016 478 GRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDG-------VYIDGRLIDKGDCTGPK----------------- 533 (727)
T ss_pred CceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCC-------EEECCEEeccccccCHH-----------------
Confidence 467999999999999999999999999999999999987 66777766543322111
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcC-CCHHHHHHHHhccc---cCC
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEITMQKAGIM---KPN 873 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG-~TleeIA~~KagI~---K~g 873 (1255)
. +..++.+..+|++|+|+|.+|.+.....+.+|+++|||||+.||++.+| +|+|+|+..|+.|+ +++
T Consensus 534 --s-------~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~ 604 (727)
T PRK14016 534 --S-------ARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPD 604 (727)
T ss_pred --H-------HHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCC
Confidence 0 0112366789999999999998765555558999999999999999886 69999999999998 467
Q ss_pred ceEEEccCCCC
Q psy15432 874 CIAVTSANQRG 884 (1255)
Q Consensus 874 ~~av~~~~qd~ 884 (1255)
+.+|++. +|+
T Consensus 605 g~aVlNa-DD~ 614 (727)
T PRK14016 605 GYAVLNA-DDP 614 (727)
T ss_pred CeEEEcC-CCH
Confidence 7889987 443
No 83
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.87 E-value=2.3e-21 Score=244.32 Aligned_cols=200 Identities=20% Similarity=0.248 Sum_probs=138.8
Q ss_pred HHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHH
Q psy15432 92 VQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTV 171 (1255)
Q Consensus 92 ~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v 171 (1255)
..++..|-... ...++++|+||||||||||++|+++||+.+|+++|+.+|.. +.+|+..+...+.+.+.
T Consensus 465 ~~Iid~L~~~~-~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G-------~~i~~~~i~~gd~t~p~--- 533 (727)
T PRK14016 465 EAIVDMLFPEG-DDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDG-------VYIDGRLIDKGDCTGPK--- 533 (727)
T ss_pred HHHHHHhcccC-CCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCC-------EEECCEEeccccccCHH---
Confidence 45555554322 12478999999999999999999999999999999999987 77888887655444331
Q ss_pred HHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcC-CCHHHH
Q psy15432 172 YNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLG-NTIEEI 250 (1255)
Q Consensus 172 ~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG-~Tle~I 250 (1255)
+ +..++.+..+|++|+|+|.+|.+...--+.+|+++|||||+.||++++| +|+|+|
T Consensus 534 ---------------s--------~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~ 590 (727)
T PRK14016 534 ---------------S--------ARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDL 590 (727)
T ss_pred ---------------H--------HHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHH
Confidence 0 0012356789999999999998765555558999999999999999886 699999
Q ss_pred HHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcc-------------eee------e-cCc----
Q psy15432 251 TMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL-------------NYR------W-RGQ---- 303 (1255)
Q Consensus 251 a~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~-------------~~~------~-~~~---- 303 (1255)
+..|+.|++ ++..+|++. +|+.. ..+...+.. .+..|..+... .+. + .+.
T Consensus 591 ~~~K~~i~~~v~~~g~aVlNa-DD~~~-~~~~~~~~~-~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~ 667 (727)
T PRK14016 591 AKVKRVVVEAVKPDGYAVLNA-DDPMV-AAMAERCKG-KVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIR 667 (727)
T ss_pred HHHHHHHHhhhCCCCeEEEcC-CCHHH-HHHHHhCCC-cEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCccee
Confidence 999999984 556678876 44433 333333321 12223222100 000 0 110
Q ss_pred -----ccccCCCc--hhHHhhHHHHHHHHHHH
Q psy15432 304 -----PLDEDWKS--TVQSINISLAIQLAYLW 328 (1255)
Q Consensus 304 -----~i~l~l~G--~~q~~Na~lAia~a~~~ 328 (1255)
.+.+.+.| .||+.|+++|+++|..+
T Consensus 668 ~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l 699 (727)
T PRK14016 668 IISLADIPLTLGGKAGFNIENALAAIAAAWAL 699 (727)
T ss_pred eccccccceecCCcchhhHHHHHHHHHHHHHc
Confidence 23343365 79999999999988765
No 84
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.87 E-value=9.1e-21 Score=224.45 Aligned_cols=233 Identities=17% Similarity=0.192 Sum_probs=153.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||++|+.+||+++|..+|-. | |.|+.
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~gn-----------i---G~p~~---------------------------- 127 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGGN-----------I---GTPLA---------------------------- 127 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEEE-----------e---cHhHH----------------------------
Confidence 49999999999999999999999998433211 1 22211
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC---Cceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~---g~~~v 265 (1255)
. ...+.|++|+|+|+.+ ++.+.++ +|+++|||||+.||+|++| |+++|+.+|..|++. +..+|
T Consensus 128 -----~------~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 128 -----E------LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred -----h------cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 0 1235699999998876 3455665 6999999999999999999 999999999999853 45567
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCc-c-eeeecCcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSI-L-NYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVID 343 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~-~-~~~~~~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~ 343 (1255)
++. +++ .. .. ......+..... . .+.+... .+.+.+.| ..|+++|++++..+
T Consensus 194 ~n~-dd~-~~---~~---~~~~~~fg~~~~~~~~~~~~~~--~~~~~~~~-~~NalaA~a~a~~~--------------- 247 (401)
T PRK03815 194 LPK-KFK-NT---PT---KAQKIFYEDEEDLAEKFGIDSE--KINFKGPF-LLDALLALAVYKIL--------------- 247 (401)
T ss_pred Eec-ccc-cc---cc---CCcEEEEecCCccccceeEehH--hcCCchHH-HHHHHHHHHHHHHh---------------
Confidence 665 333 21 11 111111221110 0 1111111 13345654 99999999988765
Q ss_pred HhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEE
Q psy15432 344 KFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQV 422 (1255)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~ 422 (1255)
|+ +.+.++|++|+ .|+|||+
T Consensus 248 --------------------------------------------------------G~---~~~~~~L~~f~~~~~R~e~ 268 (401)
T PRK03815 248 --------------------------------------------------------FD---ELDYERLNAFKIGKHKLEE 268 (401)
T ss_pred --------------------------------------------------------Cc---HHHHHHHHhCCCCCceEEE
Confidence 21 23456899999 9999999
Q ss_pred EEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCC-CCChhhhhHHh
Q psy15432 423 IRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTG-ERDPTKLLSPL 499 (1255)
Q Consensus 423 v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~-drD~~~ll~~L 499 (1255)
+.. +++.||.| ++.||+|+..+++.+ .. +++++|+|-.. ..++.++.+.+
T Consensus 269 ~~~~~gv~~idDs~~tn~~a~~~al~~~----~~-----------------------~~ii~IlGG~~k~~~~~~l~~~~ 321 (401)
T PRK03815 269 FRDKQGRLWVDDSKATNVDATLQALKRY----KD-----------------------KKIHLILGGDDKGVDLTPLFEFM 321 (401)
T ss_pred EEEECCEEEEECCCCCCHHHHHHHHHhC----CC-----------------------CCEEEEECCCCCCCCHHHHHHHH
Confidence 975 67788888 488898777776643 11 16799999422 33666777766
Q ss_pred hccCCCcEEEEc
Q psy15432 500 LQSNQFEYILVT 511 (1255)
Q Consensus 500 ~~~~~~d~vi~t 511 (1255)
.....+ |++.
T Consensus 322 -~~~~~~-v~~~ 331 (401)
T PRK03815 322 -KNLNIE-LYAI 331 (401)
T ss_pred -HhhCcE-EEEE
Confidence 333333 5553
No 85
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.86 E-value=4.8e-21 Score=203.32 Aligned_cols=165 Identities=24% Similarity=0.301 Sum_probs=111.8
Q ss_pred EcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHH
Q psy15432 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFL 192 (1255)
Q Consensus 113 VtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~L 192 (1255)
||||||||||++|+.+||+++|++++.+++-. ..+ ....++
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~-----------------~~~----------------------~~~~~~ 41 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTN-----------------NQI----------------------GLPLLL 41 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCH-----------------HHH----------------------HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCccccccccc-----------------chH----------------------HHHHHH
Confidence 89999999999999999999999998887410 000 111111
Q ss_pred HHHhhhhhhccCCCEEEEeeccCCccc-cccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC---CCceeeecc
Q psy15432 193 TVMSFYVFVKEKPDAVIMEVGIGGRYD-NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSA 268 (1255)
Q Consensus 193 t~~A~~~F~~~~vD~aVlEvG~GGr~D-~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k---~g~~~v~~~ 268 (1255)
. ...+.++|++|+|+|+++..+ ....+.+|+++|||||+.||+++++ |+++|+.+|+.+++ ++..+|++.
T Consensus 42 ~-----~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 42 L-----NAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp H-----HHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred h-----hhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 1 124579999999999993332 2222237999999999999999997 99999999999997 456788877
Q ss_pred CCCchHHHHHHHhhhccCceEEEcCCcceee-----------------ec--CcccccCCCchhHHhhHHHHHHHH
Q psy15432 269 NQRGPCKQILLETSRALNCVLLEAPSILNYR-----------------WR--GQPLDEDWKSTVQSINISLAIQLA 325 (1255)
Q Consensus 269 ~q~~e~~~vl~~~a~~~~~~l~~~~~~~~~~-----------------~~--~~~i~l~l~G~~q~~Na~lAia~a 325 (1255)
+++.....+..... .+..|..+...++. .. ..++.++++|.||++|+++|+++|
T Consensus 116 -dd~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 116 -DDPELAEIAANSKC--KVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp -TSHHHHHHHHHHTT--TEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHhcCC--cEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 55544444443221 13334433322111 11 125789999999999999999976
No 86
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.85 E-value=3.6e-21 Score=204.26 Aligned_cols=163 Identities=25% Similarity=0.316 Sum_probs=109.7
Q ss_pred ecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHH
Q psy15432 725 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFL 804 (1255)
Q Consensus 725 VTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~l 804 (1255)
||||||||||++|+.+||+++|++++.+++- ++.+ -
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~-----~~~~---------------------------------------~ 36 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT-----NNQI---------------------------------------G 36 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSC-----HHHH---------------------------------------H
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccc-----cchH---------------------------------------H
Confidence 8999999999999999999999988887641 0000 0
Q ss_pred HHHHHHhhhcCCCCEEEEecccCCccc-cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEEEcc
Q psy15432 805 TVMSFYVFVKEKPDAVIMEVGIGGRYD-NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSA 880 (1255)
Q Consensus 805 T~mAf~~F~~~~vD~aVlEVG~GGr~D-~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~ 880 (1255)
....+....+.++|++|+|+|+++..+ ....+.+|+++|||||+.||++++| |+++|+.+|+.|++ +++.+|++.
T Consensus 37 ~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 37 LPLLLLNAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred HHHHHhhhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 011112224568999999999993332 2222137999999999999999997 99999999999997 677899987
Q ss_pred CCCChhHHHHHHHhhhcCCeEEEcCC--cc--------------cee---cc--CCccccCCCchhHHHHHHHHHHHH
Q psy15432 881 NQRGPCKQILLETSRALNCVLLEAPS--IL--------------NYR---WR--GQPLDEDWKSTVQSINISLAIQLA 937 (1255)
Q Consensus 881 ~qd~~~~~vl~~~A~~~~~~l~~~~~--~~--------------~~~---~~--~~~v~l~L~G~hq~~Na~lAiala 937 (1255)
+++.....+.. .+++++.++. .. .+. .. ..++.++++|.||++|+++|+++|
T Consensus 116 -dd~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 116 -DDPELAEIAAN----SKCKVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp -TSHHHHHHHHH----HTTTEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHh----cCCcEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 44433333332 2233333321 11 010 11 124778999999999999999986
No 87
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.32 E-value=2.8e-12 Score=121.38 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=64.6
Q ss_pred CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCC---CC
Q psy15432 416 WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGE---RD 491 (1255)
Q Consensus 416 ~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~d---rD 491 (1255)
||||||++.. +++.||+||||||+|++++++++++....+ ++++|||++++ |+
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~-----------------------~~i~V~G~~~d~g~~~ 57 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYPKG-----------------------RIIAVFGAMGDLGSKD 57 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCTTS-----------------------EEEEEEEEBTT-HTSH
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhccCC-----------------------cEEEEEcccccccccc
Confidence 8999999997 678999999999999999999999875432 89999999888 76
Q ss_pred hh--hhhHHhhccCCCcEEEEcCCCCCCCCC
Q psy15432 492 PT--KLLSPLLQSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 492 ~~--~ll~~L~~~~~~d~vi~t~~~~~~~~~ 520 (1255)
.. .++..+ .....|.+|+|+++++.+++
T Consensus 58 ~~~~~~~~~~-~~~~~d~vi~~~~~~r~~~~ 87 (91)
T PF02875_consen 58 KDFHEEIGEL-AAQLADVVILTGDNPRAEDP 87 (91)
T ss_dssp HHCHHHHHHH-HTTCSSEEEEETSBTTTS-H
T ss_pred HHHHHHHHHH-HHhcCCEEEEcCCCCCCCcc
Confidence 55 444444 35568889999999998875
No 88
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.22 E-value=2.4e-11 Score=115.07 Aligned_cols=80 Identities=25% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC---CChh--hhhhhhh
Q psy15432 1028 WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE---RDPT--KLLSPLL 1101 (1255)
Q Consensus 1028 ~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d---rD~~--~ll~~L~ 1101 (1255)
||||||++.. +++++|+||||||+|++++++++++... .+++++|||++++ |+.+ .++..+
T Consensus 1 vpgR~e~v~~~~~~~vi~D~ahNp~s~~a~l~~l~~~~~------------~~~~i~V~G~~~d~g~~~~~~~~~~~~~- 67 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDDYAHNPDSIRALLEALKELYP------------KGRIIAVFGAMGDLGSKDKDFHEEIGEL- 67 (91)
T ss_dssp ETTSSEEEEEETTEEEEEET--SHHHHHHHHHHHHHHCT------------TSEEEEEEEEBTT-HTSHHHCHHHHHHH-
T ss_pred CCCCcEEEeeCCCcEEEEECCCCHHHHHHHHHHHHHhcc------------CCcEEEEEccccccccccHHHHHHHHHH-
Confidence 8999999997 5789999999999999999999998642 2689999999888 7655 444455
Q ss_pred cCCCCcEEEEcCCCCcccc
Q psy15432 1102 QSNQFEYILVTPNILTNEI 1120 (1255)
Q Consensus 1102 ~~~~~d~vi~t~~~~~~~~ 1120 (1255)
.....|.++++++++..+.
T Consensus 68 ~~~~~d~vi~~~~~~r~~~ 86 (91)
T PF02875_consen 68 AAQLADVVILTGDNPRAED 86 (91)
T ss_dssp HTTCSSEEEEETSBTTTS-
T ss_pred HHhcCCEEEEcCCCCCCCc
Confidence 3555788999998877654
No 89
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0041 Score=70.82 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=92.4
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE----cCccc--ccccceeeeCCeecChhhhhhHHHHHHHHHHHHhh
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK 792 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~----tSPhL--~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~ 792 (1255)
.+|+|||+ .||+|...-+-.-|+..|+|++.. +||.- .=+-+|||.+..-..+..|.+-. .
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~----------~- 120 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS----------P- 120 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec----------C-
Confidence 49999998 679999999999999999999997 55530 01234454444333333332211 0
Q ss_pred cCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec-ccC-CccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc
Q psy15432 793 HAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 870 (1255)
Q Consensus 793 ~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV-G~G-Gr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~ 870 (1255)
..+...-..--|..+...+--.++|++|+|+ |.| ++.|-.+.. +..+++.+. -.|+ ++-..|+||+
T Consensus 121 -srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p-----g~GD---~~Q~iK~Gim 188 (323)
T COG1703 121 -SRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP-----GAGD---DLQGIKAGIM 188 (323)
T ss_pred -CCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC-----CCCc---HHHHHHhhhh
Confidence 1112223333444555556778999999997 898 899988886 444443332 3454 4556699999
Q ss_pred cCCceEEEccCCCChhH
Q psy15432 871 KPNCIAVTSANQRGPCK 887 (1255)
Q Consensus 871 K~g~~av~~~~qd~~~~ 887 (1255)
.=+..+++|.-+.+.+.
T Consensus 189 EiaDi~vINKaD~~~A~ 205 (323)
T COG1703 189 EIADIIVINKADRKGAE 205 (323)
T ss_pred hhhheeeEeccChhhHH
Confidence 99989999983333333
No 90
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0053 Score=70.00 Aligned_cols=156 Identities=21% Similarity=0.250 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEE----cCCcc--cccceeEEeCCeecC
Q psy15432 89 DQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPIS 160 (1255)
Q Consensus 89 ~~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~----tSPhL--~~~rERI~InG~~is 160 (1255)
+-++.++.+-|++ .+|+|||+ -||+|..--+-.-|+..|+||+.. +||.- --..+|||.+..-..
T Consensus 39 ~ll~~l~p~tG~a-------~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~ 111 (323)
T COG1703 39 ELLRALYPRTGNA-------HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVD 111 (323)
T ss_pred HHHHHHhhcCCCC-------cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccC
Confidence 3455555555665 49999998 579999999999999999999987 55541 112455665554444
Q ss_pred hhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEee-ccC-CccccccccCCccEEEEcCCCcc
Q psy15432 161 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYD 238 (1255)
Q Consensus 161 ~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEv-G~G-Gr~D~tnii~~P~v~vITnIg~D 238 (1255)
+..|-++. +. .....-..--|..+..++--.++|++|+|+ |.| ++.|-.+.+ +..+++.+.
T Consensus 112 ~~vFiRs~----------~s--rG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p-- 174 (323)
T COG1703 112 PGVFIRSS----------PS--RGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP-- 174 (323)
T ss_pred CCeEEeec----------CC--CccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC--
Confidence 44443331 11 111222222333444455778999999997 777 788888886 333333332
Q ss_pred hhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchH
Q psy15432 239 HTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPC 274 (1255)
Q Consensus 239 Hld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~ 274 (1255)
| .-+++-..|+|+|.-+-.+|+|..+.+.+
T Consensus 175 -----g-~GD~~Q~iK~GimEiaDi~vINKaD~~~A 204 (323)
T COG1703 175 -----G-AGDDLQGIKAGIMEIADIIVINKADRKGA 204 (323)
T ss_pred -----C-CCcHHHHHHhhhhhhhheeeEeccChhhH
Confidence 2 33567778999999888888887333333
No 91
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.09 E-value=0.09 Score=59.45 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCcccccccceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE----cCccc--ccccceeeeCCeecC
Q psy15432 701 DQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPIS 772 (1255)
Q Consensus 701 ~~~~~~L~~Lg~~~~~~~~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~----tSPhL--~~~~ERI~InG~pIs 772 (1255)
+...++|+++-... .+-.+|+|||+ .||+|...-+...|++.|.|+|+. +||.- .=+-.|||.+-..-.
T Consensus 13 ~~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d 89 (266)
T PF03308_consen 13 PEARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRD 89 (266)
T ss_dssp HHHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTS
T ss_pred HHHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCC
Confidence 35566676663221 34569999997 579999999999999999999997 45520 011233333211111
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEec-ccC-CccccccccCCCcEEEEcCCCch
Q psy15432 773 YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLGYD 850 (1255)
Q Consensus 773 ~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEV-G~G-Gr~D~TNvi~~P~VavITnIg~D 850 (1255)
+..|.+-.. ..+...-.---|.-+..++-..+.|++++|+ |.| .+.|..++.. ..+.+++.-
T Consensus 90 ~~vfIRS~a------------tRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~Pg--- 153 (266)
T PF03308_consen 90 PGVFIRSMA------------TRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLVPG--- 153 (266)
T ss_dssp TTEEEEEE---------------SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEESS---
T ss_pred CCEEEeecC------------cCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEecCC---
Confidence 111111000 0111111111222233333667899999997 999 7888888873 333333332
Q ss_pred hhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 851 HTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 851 Hl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
+|+.+. ..|+||+.-...+|+|.
T Consensus 154 ----~GD~iQ---~~KaGimEiaDi~vVNK 176 (266)
T PF03308_consen 154 ----LGDEIQ---AIKAGIMEIADIFVVNK 176 (266)
T ss_dssp ----TCCCCC---TB-TTHHHH-SEEEEE-
T ss_pred ----CccHHH---HHhhhhhhhccEEEEeC
Confidence 344333 45899998777888887
No 92
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.76 E-value=0.51 Score=54.79 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+.+|..+.... ...++|.|+|.+ ||||++..+...|...|++++++.
T Consensus 20 ~~~~~~~~~~~~---~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMPYT---GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCccc---CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556677664332 456899999965 799999999999999999999865
No 93
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.65 E-value=0.063 Score=60.65 Aligned_cols=150 Identities=23% Similarity=0.243 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEE----cCCcc--cccceeEEeCCeecCh
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF----SSPHL--IEVRERIKLNGEPISY 161 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~----tSPhL--~~~rERI~InG~~is~ 161 (1255)
...++|.++-... .+-.+|+|||+ -||+|...-+...|++.|.++|.. +||.- --..+|||.+...-.+
T Consensus 14 ~~~~ll~~l~~~~---g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~ 90 (266)
T PF03308_consen 14 EARELLKRLYPHT---GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDP 90 (266)
T ss_dssp HHHHHHHHHGGGT---T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTST
T ss_pred HHHHHHHHHHhhc---CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCC
Confidence 5566666664322 24469999997 579999999999999999999997 55531 0112333332111111
Q ss_pred hhhhhHHHHHHHHHHhhhhc---cCCcchHHHHHHHHhhhhhhccCCCEEEEee-ccC-CccccccccCCccEEEEcCCC
Q psy15432 162 DKFTKYFWTVYNALHAKRKH---AEDMPAYFKFLTVMSFYVFVKEKPDAVIMEV-GIG-GRYDNTNIIPNTAVVGITSLG 236 (1255)
Q Consensus 162 ~~ft~~~~~v~~~l~~~~~~---~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEv-G~G-Gr~D~tnii~~P~v~vITnIg 236 (1255)
..|-+. +... ++-.+.-.+.+.+| ...+.|++++|+ |.| .+.|-.++.+ ..+.+++.-.
T Consensus 91 ~vfIRS----------~atRG~lGGls~~t~~~v~ll-----~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~Pg~ 154 (266)
T PF03308_consen 91 GVFIRS----------MATRGSLGGLSRATRDAVRLL-----DAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLVPGL 154 (266)
T ss_dssp TEEEEE----------E---SSHHHHHHHHHHHHHHH-----HHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEESST
T ss_pred CEEEee----------cCcCCCCCCccHhHHHHHHHH-----HHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEecCCC
Confidence 222111 0000 11123444444444 668999999996 778 6788887763 2333444433
Q ss_pred cchhhhcCCCHHHHHHHHHcccCCCceeeecc
Q psy15432 237 YDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268 (1255)
Q Consensus 237 ~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~ 268 (1255)
-|- |-..|+||+.-.-.+|++.
T Consensus 155 GD~----------iQ~~KaGimEiaDi~vVNK 176 (266)
T PF03308_consen 155 GDE----------IQAIKAGIMEIADIFVVNK 176 (266)
T ss_dssp CCC----------CCTB-TTHHHH-SEEEEE-
T ss_pred ccH----------HHHHhhhhhhhccEEEEeC
Confidence 332 3345888887666677776
No 94
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.41 E-value=1 Score=52.30 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=37.2
Q ss_pred HHHHHHHhcCcccccccceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 703 VVQYLGHLNITLDDIKKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 703 ~~~~L~~Lg~~~~~~~~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
...+|+.+.... ...++|.|+|.+ ||||++..+...|+..|++++++.
T Consensus 20 ~~~~~~~~~~~~---~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMPYT---GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCccc---CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 555666664322 456899999965 799999999999999999998865
No 95
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.24 E-value=0.24 Score=55.57 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=34.8
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccc
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 758 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~ 758 (1255)
+|+|+|.-||||+..-|+.-|+..|+|+.+-||-|+.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 5899999999999999999999999999999999864
No 96
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.61 E-value=0.84 Score=53.89 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=30.4
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+..+|+|+|.. ||||.+..+...|+..|+++++.+
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34699999975 799999999999999999999874
No 97
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=91.00 E-value=0.26 Score=60.42 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.2
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
++.|-||||. |||+++.-|...|++.|++++.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4567888875 5999999999999999999999865
No 98
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=87.87 E-value=1.1 Score=54.19 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHhcCCccCCC--CccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 86 VQVDQVVQYLGHLNITLDDIK--KLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~~~~~~--~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++++.++++.++..+++-+ +.++|.|+ |=-||||||.-+++.|...|+||-++
T Consensus 82 ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 889999999999987765544 57899999 66789999999999999999999876
No 99
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=87.56 E-value=5.1 Score=47.46 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=30.4
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+-.+|+|+|.. ||||++..+...|+..|++++++.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34599999986 799999999999999999999874
No 100
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=87.30 E-value=0.78 Score=56.36 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
++.|-||||. |||++++-|...|++.|++++.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4678888886 4999999999999999999999865
No 101
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=85.86 E-value=1.6 Score=52.67 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHhcCCccCC--CCccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 86 VQVDQVVQYLGHLNITLDDI--KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~~~~~--~~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.++++.++...++.++++. .+.++|.|+ |=-||||||.-+++.|...|+||-++-
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 88999999999998765432 357899999 566799999999999999999997763
No 102
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=85.30 E-value=1.2 Score=54.58 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=25.1
Q ss_pred cCC-CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 726 SGT-KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 726 TGT-nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
|+| .|||+++.-|...|++.|++++.|.
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 444 7999999999999999999999996
No 103
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.31 E-value=1.5 Score=50.26 Aligned_cols=117 Identities=16% Similarity=0.102 Sum_probs=66.9
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE-------cCcccccccceeeeCCeecChhh--hhhHHHHHHHH
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF-------SSPHLIEVRERIKLNGEPISYDK--FTKYFWTVYNA 786 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~-------tSPhL~~~~ERI~InG~pIs~~~--f~~~~~~v~~~ 786 (1255)
..++|.||..+ ||+||+..++..|.+.|+|||+. +.|++...++.. |.+-.... +....... .
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~---g~~~~~~g~~~~~~~~~~--~ 130 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLP---GLTELLAGEALEPVIQHD--G 130 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCC---CcccccCCCccccceecC--c
Confidence 45788888665 79999999999999999999996 334433332211 11111000 11100000 0
Q ss_pred HHHHhh--cCCCCCcHHHHHHHHHHHhhh---cCC-CCEEEEecccC-CccccccccCCCc
Q psy15432 787 LHAKRK--HAEDMPAYFKFLTVMSFYVFV---KEK-PDAVIMEVGIG-GRYDNTNIIPNTA 840 (1255)
Q Consensus 787 l~~~~~--~~~~~pt~Fe~lT~mAf~~F~---~~~-vD~aVlEVG~G-Gr~D~TNvi~~P~ 840 (1255)
++.+.- ....++.+-+.+.--++.-|+ ..+ .|++|+++.-| |..|.+-+-.-|+
T Consensus 131 ~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~~ 191 (265)
T COG0489 131 IKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPD 191 (265)
T ss_pred cceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhccCC
Confidence 111000 022345556666666655554 345 99999999888 7777766654454
No 104
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=83.69 E-value=1.7 Score=52.37 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHhcCccccc--ccceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 698 VQVDQVVQYLGHLNITLDDI--KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~~--~~l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+.++++.++++.++...+.. .+.++|.|+ |=-||||||.-++..|...|+||.+.
T Consensus 82 ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 67888888888776655433 347899999 66779999999999999999999776
No 105
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=82.81 E-value=6.7 Score=40.89 Aligned_cols=132 Identities=22% Similarity=0.271 Sum_probs=67.4
Q ss_pred EEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC-Cccc-----ccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhc-
Q psy15432 111 IHISGT--KGKGSTCAYCESILRSHGFSTGFFSS-PHLI-----EVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH- 181 (1255)
Q Consensus 111 IhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS-PhL~-----~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~- 181 (1255)
|.+.|- .||||++..+...|.+.|.++.++.- |.-. -+.+++.++.....+..+... ....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 71 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRS----------LATRG 71 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEE----------cCCcC
Confidence 344443 48999999999999999999887542 1100 011222221110000000000 0000
Q ss_pred -cCC-cchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCc-cEEEEcCCCcchhhhcCCCHHHHHHHHHccc
Q psy15432 182 -AED-MPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNT-AVVGITSLGYDHTAVLGNTIEEITMQKAGIM 258 (1255)
Q Consensus 182 -~~~-~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P-~v~vITnIg~DHld~lG~Tle~Ia~~KagI~ 258 (1255)
... .....+.+..+ ...+.|++++++ -|-..+...++..- .+.++|+-. -.+.|+-.|..+|
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~ 136 (148)
T cd03114 72 FLGGLSRATPEVIRVL-----DAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIM 136 (148)
T ss_pred cccccchhHHHHHHHH-----HhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHh
Confidence 000 01122233222 345899999999 55223333343322 255666655 3467999999998
Q ss_pred CCCceeeec
Q psy15432 259 KPNCIAVTS 267 (1255)
Q Consensus 259 k~g~~~v~~ 267 (1255)
...-.++++
T Consensus 137 ~~~~~~~~~ 145 (148)
T cd03114 137 EIADIVVVN 145 (148)
T ss_pred hhcCEEEEe
Confidence 876655554
No 106
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=82.34 E-value=6.2 Score=41.13 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=39.2
Q ss_pred cCCCCEEEEecccCCccccccccCCCc-EEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEcc
Q psy15432 814 KEKPDAVIMEVGIGGRYDNTNIIPNTA-VVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 880 (1255)
Q Consensus 814 ~~~vD~aVlEVG~GGr~D~TNvi~~P~-VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~ 880 (1255)
..+.|++++++ .|-..+...++..-+ +.++|+-. -.+.|+--|..+|+....++++.
T Consensus 89 ~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 89 AAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred hcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 45899999999 552333344444333 56677655 34689999999998887777764
No 107
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=80.99 E-value=4.5 Score=52.38 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 729 KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 729 nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
.|||++|.-|...|++.|+++|.|- |
T Consensus 14 ~GKT~vslgL~~~L~~~G~~Vg~fK-P 39 (684)
T PRK05632 14 VGLTSVSLGLMRALERKGVKVGFFK-P 39 (684)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeC-C
Confidence 7999999999999999999999997 5
No 108
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=80.93 E-value=2.6 Score=50.90 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHhcCccccc--ccceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 698 VQVDQVVQYLGHLNITLDDI--KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~~--~~l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++++.++.+.++.+.++. .+.++|.|+ |=-|||||+.-++..|...|+||-+.
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 67888888888887654322 447899999 55679999999999999999999775
No 109
>PRK00784 cobyric acid synthase; Provisional
Probab=80.42 E-value=4.6 Score=50.24 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred eEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+.|-|||| .|||+++.-|...|++.|++++.|-.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45778887 79999999999999999999998854
No 110
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=79.73 E-value=1.8 Score=45.96 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=32.8
Q ss_pred ceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 720 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 720 l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
.++++|+|.+ ||||...=+-..|++.|||++..-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 5799999975 899999999999999999999987766
No 111
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=78.48 E-value=2.3 Score=47.82 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=34.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcc
Q psy15432 110 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHL 145 (1255)
Q Consensus 110 vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL 145 (1255)
+|+|+|.-||||+..-|..-|+..|+++.+-||-|+
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 589999999999999999999999999999999995
No 112
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=77.74 E-value=3.6 Score=50.66 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=24.8
Q ss_pred cCC-CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 114 SGT-KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 114 tGT-nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
|+| -|||++++-|...|++.|++++.|-
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 344 6999999999999999999999996
No 113
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=77.49 E-value=5.4 Score=47.10 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCccCCCCccEEEE----cCCCChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhV----tGTnGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
..|+.+-+.|.........++|.| +|-.|||.++.++...|++.|+++|..+=.
T Consensus 31 ~~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 31 ALRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred HHHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 456666666654333346789988 789999999999999999999999987643
No 114
>PRK14974 cell division protein FtsY; Provisional
Probab=77.22 E-value=12 Score=44.53 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=30.3
Q ss_pred ceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|.++|.+ |||||++.++..|+..|+++++.+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4688888865 79999999999999999999887653
No 115
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=77.21 E-value=3 Score=45.67 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=26.6
Q ss_pred EEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+|+|+| =-||||||.-++..|.+.|+||.+.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 577775 4479999999999999999999776
No 116
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=77.13 E-value=2.8 Score=44.67 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=32.9
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+++++|+|.+ ||||++.=+-..|++.||+++..-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 5799999986 899999888889999999999987766
No 117
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=76.99 E-value=5.3 Score=45.74 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=30.0
Q ss_pred CccEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
..++|.|+.. -||+||+..++..|.+.|+|||+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 4578998855 489999999999999999999996
No 118
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=76.68 E-value=4.7 Score=47.60 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCcccccccceEEEe----cCCCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 702 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 702 ~~~~~L~~Lg~~~~~~~~l~vIhV----TGTnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..+..+-+.|.........|||.| .|-.|||.++.++...|++.|+++|..+=
T Consensus 31 ~~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsR 87 (325)
T PRK00652 31 ALRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSR 87 (325)
T ss_pred HHHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECC
Confidence 344445455543322246789999 89999999999999999999999998753
No 119
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=76.42 E-value=3.7 Score=48.33 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=29.5
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|.+.|- .|||||++-++..|+..|+++.+.+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457777775 479999999999999999999887653
No 120
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=75.69 E-value=5.2 Score=43.33 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=28.6
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.++|.|++++ ||||++.-++..|.+.|++|-++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5888888665 69999999999999999998765
No 121
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=75.56 E-value=6.7 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 729 KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 729 nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
.|||.+|+.|..+|++.|++++-|..-
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 799999999999999999999988664
No 122
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=75.23 E-value=2.7 Score=46.06 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=26.2
Q ss_pred EEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+|+|+| =-||||||..++..|.+.|+||.+.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 566665 4479999999999999999999775
No 123
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=75.03 E-value=7 Score=46.04 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=30.7
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
+-.+|.+.|-| |||||++-++..|+..|.++.+.+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34677777765 79999999999999999999988754
No 124
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=74.40 E-value=4 Score=37.43 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.7
Q ss_pred EEEcCC--CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 111 IHISGT--KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 111 IhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
|.|+|. -|||+++..+...|++.|+++.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456655 4999999999999999999998877
No 125
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=72.41 E-value=18 Score=47.04 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=28.3
Q ss_pred EEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 110 VIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 110 vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
.|-|+|| .|||++|.-|...|++.|+++|.|- |-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK-Pi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK-PI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC-Cc
Confidence 3445544 6899999999999999999999997 63
No 126
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=72.40 E-value=9.7 Score=43.83 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=28.5
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCC--eEEEcCC
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFS--TGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k--~Gl~tSP 143 (1255)
-+|+|+|+ -||+|||.++..+|++.+-+ +-++++-
T Consensus 83 fIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmD 121 (283)
T COG1072 83 FIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121 (283)
T ss_pred EEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 48999998 58999999999999998754 5555543
No 127
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=72.23 E-value=3.6 Score=37.78 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.5
Q ss_pred EEecCC--CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 723 IHISGT--KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 723 IhVTGT--nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
|.++|. -|||+++..++..|++.|+++.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456655 5999999999999999999998876
No 128
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=71.88 E-value=8 Score=47.00 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHhcC-----------CccC-CCCccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 86 VQVDQVVQYLGHLNI-----------TLDD-IKKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~-----------~~~~-~~~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++++.++-+.++. |.+. -.+.++|.|+ |=-||||||.-|++.|...|+||.++
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 677777777666652 2211 1267899999 55679999999999999999999775
No 129
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=71.33 E-value=9.9 Score=41.53 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCccEEEEcC---CCChhHHHHHHHHHHHH-CCCCeEEE
Q psy15432 106 KKLNVIHISG---TKGKGSTCAYCESILRS-HGFSTGFF 140 (1255)
Q Consensus 106 ~~l~vIhVtG---TnGKgST~a~l~sIL~~-~G~k~Gl~ 140 (1255)
.+.++|.|++ --||||++..++..|.+ .|+||-+.
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4568999994 56899999999999986 69999886
No 130
>KOG0780|consensus
Probab=70.63 E-value=10 Score=45.48 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=29.3
Q ss_pred CccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+-+||-..|- .||||||+=++..++..|||+++..-
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvca 137 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCA 137 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEee
Confidence 4456666664 37999999999999999999999754
No 131
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=70.27 E-value=5.4 Score=44.91 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=26.7
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|. |--||||||.-+++.|.+.|+||.+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 344554 66789999999999999999999886
No 132
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=70.03 E-value=11 Score=43.27 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=28.8
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCC--eEEEcCc
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFS--TGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~r--tGl~tSP 755 (1255)
--+|+|+|+ .||+|||..+..+|...+-+ +-++++-
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmD 121 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 458999997 58999999999999998754 4555443
No 133
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.93 E-value=4.6 Score=44.15 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=25.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 110 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 110 vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+||.||. |||||++=+++.++..|.++++.+.-.
T Consensus 6 lvGptGv-GKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 6 LVGPTGV-GKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEESTTS-SHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EECCCCC-chHhHHHHHHHHHhhccccceeecCCC
Confidence 4555554 899999999999998899999988643
No 134
>PHA02518 ParA-like protein; Provisional
Probab=68.96 E-value=6.3 Score=42.49 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=26.3
Q ss_pred EEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 110 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 110 vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+|.|+ |--||||++..++..|.+.|++|.++-
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD 36 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVD 36 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 55665 455699999999999999999998763
No 135
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=68.94 E-value=7.3 Score=41.64 Aligned_cols=43 Identities=30% Similarity=0.518 Sum_probs=36.3
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeec
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPI 159 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~i 159 (1255)
-|+|||- -||||.|.-+...|+..||++|-|-+|. +|-+|.-+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E-------VR~gGkR~ 51 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE-------VREGGKRI 51 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee-------eecCCeEe
Confidence 5889995 6899999999999999999999999888 55555543
No 136
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=68.78 E-value=20 Score=39.60 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=55.0
Q ss_pred CCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCC-eec--------ChhhhhhHHHHHHHHHHH--------
Q psy15432 727 GTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNG-EPI--------SYDKFTKYFWTVYNALHA-------- 789 (1255)
Q Consensus 727 GTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG-~pI--------s~~~f~~~~~~v~~~l~~-------- 789 (1255)
|-.||||++.-++..+.+.|+||.++..- .+.++.-.. ..+ .+.....+..++......
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~d----~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVSTD----PAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWGGEG 83 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEECC----CCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhcccchh
Confidence 34699999999999999999999998541 111110000 000 011111222222211110
Q ss_pred --HhhcCCCCCcHHHHHHHHHHHhhhcCC-CCEEEEecccC
Q psy15432 790 --KRKHAEDMPAYFKFLTVMSFYVFVKEK-PDAVIMEVGIG 827 (1255)
Q Consensus 790 --~~~~~~~~pt~Fe~lT~mAf~~F~~~~-vD~aVlEVG~G 827 (1255)
........|..-|++++..+.-.++.. .|++|+-++-+
T Consensus 84 ~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 84 GLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred hhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 001134567778888876666666666 99999999754
No 137
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=68.68 E-value=6.4 Score=43.65 Aligned_cols=33 Identities=30% Similarity=0.245 Sum_probs=27.8
Q ss_pred cEEEEcC---CCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHISG---TKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtG---TnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++|.|++ --||||++.-++..|.+.|+||.+.-
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD 37 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAID 37 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5777775 45899999999999999999988753
No 138
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=68.67 E-value=8.1 Score=46.96 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=30.4
Q ss_pred ccceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 718 KKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 718 ~~l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.+.++|.|+ |=.||||||.-|+..|...|+||.+.
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 357899999 55679999999999999999999775
No 139
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=68.65 E-value=6.8 Score=42.44 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=28.3
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
.++|.|++++ ||||++..++..|...|+||-+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5788888665 69999999999999999998764
No 140
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=68.11 E-value=12 Score=43.08 Aligned_cols=36 Identities=33% Similarity=0.322 Sum_probs=30.1
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+.++|.++|. .|||||++-++..|+..|+++++.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3567777775 47999999999999999999998764
No 141
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=68.07 E-value=6.6 Score=44.75 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=27.2
Q ss_pred cEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+| =-||||||.-++..|.+.|+||-++
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 5677774 3469999999999999999999887
No 142
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=67.84 E-value=6.8 Score=40.56 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=26.3
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
|+|+|.|-+ ||||.+..|-..|.+.|++++.+-.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 477888754 9999999999999999999996643
No 143
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=67.35 E-value=11 Score=45.84 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=24.4
Q ss_pred EEecCC---CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 723 IHISGT---KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 723 IhVTGT---nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
|-|+|| .||||++.-|-..|++.|++|--|
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 556776 599999999999999998776444
No 144
>PRK06761 hypothetical protein; Provisional
Probab=67.20 E-value=39 Score=39.30 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHH----Hhhhhcc
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNAL----HAKRKHA 182 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l----~~~~~~~ 182 (1255)
++|-|+|- .||||++..+..-|...|+++..+.-+-.....|- ..+..++.++|........+.. ++....+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g 81 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKG 81 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 46777774 58999999999999988998887654332111121 1345567777777765554421 1111110
Q ss_pred C--------Ccch------------------------HHHHHHHHhhhhhhc---cCCCEEEEeeccCCccccccccCCc
Q psy15432 183 E--------DMPA------------------------YFKFLTVMSFYVFVK---EKPDAVIMEVGIGGRYDNTNIIPNT 227 (1255)
Q Consensus 183 ~--------~~p~------------------------~Fe~Lt~~A~~~F~~---~~vD~aVlEvG~GGr~D~tnii~~P 227 (1255)
. ..+. .++-.-..-+..|.+ ..-++.++|++.-
T Consensus 82 ~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R~~~rw~~f~~a~l~~dq~~ifE~s~~------------ 149 (282)
T PRK06761 82 DYYLLPYRKIKNEFGDQFSDELFNDISKNDIYELPFDKNTELITDRWNDFAEIALEENKVYIFECCFI------------ 149 (282)
T ss_pred CeEEEEehhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHHHHHHHHHHHHHhhccCceEEEeccCc------------
Confidence 0 0011 111111223344555 4556778887332
Q ss_pred cEEEEcCCCcchhhhcCCC---HHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceE
Q psy15432 228 AVVGITSLGYDHTAVLGNT---IEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVL 289 (1255)
Q Consensus 228 ~v~vITnIg~DHld~lG~T---le~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l 289 (1255)
-|--.+=|-..|-+ +..|..+=+.|+++-.|+++.. ..+.+.+.++..+++++..+
T Consensus 150 -----~~pl~~lm~~~~~~~~~i~~y~~~l~~~i~~l~p~l~yl-~~~dv~~~~~~~~~eR~~~W 208 (282)
T PRK06761 150 -----QNPVTILMIKYGAQKEKITNYVMKLAKIIENLNPMLFYL-EQDDVEFSFRKALKERNPEW 208 (282)
T ss_pred -----CCcHHHHHHHcCCCHHHHHHHHHHHHHHHhccCcEEEEe-cccCHHHHHHHHHHhcchHH
Confidence 11111223333434 4555667788889989988776 34445667777776664433
No 145
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=66.96 E-value=7 Score=43.80 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=30.7
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++.+-||||. |||.+++.+.+.|+++|++++.|-
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 3678899996 999999999999999999998884
No 146
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=66.94 E-value=6.7 Score=44.41 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=25.8
Q ss_pred EEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+|.|+| =-||||||.-++..|.+.|+||.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 355554 4589999999999999999999876
No 147
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=66.79 E-value=33 Score=41.34 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHhcCC---------cc-CCCCccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 86 VQVDQVVQYLGHLNIT---------LD-DIKKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~---------~~-~~~~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+..+++..+-..+... .+ .-++.++|.|+ |--||||||.-++..|...|+||.+.
T Consensus 72 yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 72 YTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred eCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5666666665555441 11 11356789888 45579999999999999999999875
No 148
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=66.57 E-value=11 Score=41.23 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=29.2
Q ss_pred ccceEEEecC---CCCCccHHHHHHHHHHH-CCCCeEEE
Q psy15432 718 KKLNVIHISG---TKGKGSTCAYCESILRS-HGFSTGFF 752 (1255)
Q Consensus 718 ~~l~vIhVTG---TnGKgST~aml~sILr~-~G~rtGl~ 752 (1255)
...++|.|+| --||||++..++..|.. .|+||-+.
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3468899985 56899999999999986 69999776
No 149
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=66.48 E-value=24 Score=38.87 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
|-.||||+++-++..+.+.|++|-++..
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~ 35 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3459999999999999999999999864
No 150
>PHA02518 ParA-like protein; Provisional
Probab=66.44 E-value=5.7 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=25.7
Q ss_pred EEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+|.|+ |=.||||++..++..|...|++|.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45555 55679999999999999999999776
No 151
>COG2403 Predicted GTPase [General function prediction only]
Probab=65.96 E-value=7.1 Score=46.40 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=67.5
Q ss_pred eEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCe-ecChhhhhhHHHH------H--HHHHH
Q psy15432 721 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGE-PISYDKFTKYFWT------V--YNALH 788 (1255)
Q Consensus 721 ~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~-pIs~~~f~~~~~~------v--~~~l~ 788 (1255)
|+|.|+|| .|||.++++++.+|++.|||+....-|- |.-+-+ .+..+.|.+.... . .+.++
T Consensus 127 PviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPm-------iy~~~~ieitve~~~k~edld~ha~t~eereeye 199 (449)
T COG2403 127 PVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPM-------IYRGDRIEITVERLAKLEDLDRHAATDEEREEYE 199 (449)
T ss_pred ceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCc-------eecCCchhhhHHHHhCHhhccccccchhhHHHHh
Confidence 67888887 6999999999999999999999988885 222222 2343444332211 0 01111
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCC-chhhh-hcC
Q psy15432 789 AKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLG-YDHTA-VLG 856 (1255)
Q Consensus 789 ~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg-~DHl~-~LG 856 (1255)
..-.-...-..-+.|.|.|-= ..+-.|++++| ||--|.-++-++--+.++-.+. .+|+. ++|
T Consensus 200 ~~I~tg~~vlAGvdy~~vlke---~~~~aD~Ilwd---GgnndfPfvkpd~~Ivvvda~rpg~ei~~~pG 263 (449)
T COG2403 200 SYIPTGGGVLAGVDYGTVLKE---GEKEADFILWD---GGNNDFPFVKPDLHIVVVDALRPGEEIGSFPG 263 (449)
T ss_pred hccccccceEeeeeHHHHHHH---HhhhccEEEEe---CCCCCCCcccCCeeEEEecCCCCchhhccCCC
Confidence 100002222344566666511 12335999998 4555666663222344555554 24433 444
No 152
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=65.95 E-value=9.9 Score=43.76 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=30.9
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
+.++|.++|.+ |||||++-++..|...|+++++.+.-
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45688887755 79999999999999999999998643
No 153
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=65.54 E-value=7.6 Score=43.25 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=27.6
Q ss_pred cEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+++ -||||++.-++..|.+.|+||.++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 47777765 479999999999999999999887
No 154
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=65.53 E-value=11 Score=46.36 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=26.8
Q ss_pred EEecCC---CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 723 IHISGT---KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 723 IhVTGT---nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
|-|||| .|||+++.-+.+.|++.|+++..|.+
T Consensus 4 ~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 4 FVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 445554 69999999999999999999988754
No 155
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=65.47 E-value=53 Score=40.41 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=30.0
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..+|.+.|- .|||||++-++..|+..|+++++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 467888874 58999999999999999999998765
No 156
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=65.23 E-value=9.7 Score=42.49 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=36.7
Q ss_pred CccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEE------EcCCcccccceeEEeCCeecC
Q psy15432 107 KLNVIHISG--TKGKGSTCAYCESILRSHGFSTGF------FSSPHLIEVRERIKLNGEPIS 160 (1255)
Q Consensus 107 ~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl------~tSPhL~~~rERI~InG~~is 160 (1255)
+.-+|+||| -.||||+|..|...|... ++++ |-+.+...+.||..+|..-.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~ 66 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPE 66 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccChh
Confidence 446899998 579999999999999754 4443 455666666667777654433
No 157
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=65.19 E-value=1.3e+02 Score=37.19 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.8
Q ss_pred EEEEcCC---CChhHHHHHHHHHHHHCCCCeE
Q psy15432 110 VIHISGT---KGKGSTCAYCESILRSHGFSTG 138 (1255)
Q Consensus 110 vIhVtGT---nGKgST~a~l~sIL~~~G~k~G 138 (1255)
.|-|+|| .||||++.-|-..|++.|++|-
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 4567776 4999999999999999987663
No 158
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=64.93 E-value=6.2 Score=44.99 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.9
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+| =-||||||.-++..|...|+||-+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4677764 3459999999999999999999887
No 159
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=64.17 E-value=6.5 Score=43.57 Aligned_cols=32 Identities=31% Similarity=0.248 Sum_probs=27.1
Q ss_pred eEEEecC---CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISG---TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTG---TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|++ --||||++.-++..|...|+||.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 4677765 5589999999999999999999775
No 160
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=63.92 E-value=16 Score=44.81 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred EEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 110 VIHISGT---KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 110 vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
.|-|||| .|||+++..|.+.|++.|+++.-|-+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 4556665 59999999999999999999877753
No 161
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.92 E-value=14 Score=41.91 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhcCCccCCCCccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 87 QVDQVVQYLGHLNITLDDIKKLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-.|.++.+...|.....+ ...++|.|| |--||||++..++..|.+.|+||-++
T Consensus 83 ~~e~~~~l~~~l~~~~~~-~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFS-EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHHHhhhhccC-CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 456667766666554322 356899999 55689999999999999999999776
No 162
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=63.87 E-value=7.8 Score=41.40 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.7
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
-|+|||- .||||.+.-++..|+..||++|=|-+|.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 5899995 6899999999999999999999888886
No 163
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.83 E-value=15 Score=43.39 Aligned_cols=36 Identities=31% Similarity=0.288 Sum_probs=30.1
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+..+|-+.|.| |||||.+=|++.|++.|+++-+-..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~ 175 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAG 175 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEec
Confidence 46678788877 6999999999999999999877543
No 164
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=63.63 E-value=9.4 Score=42.85 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=27.9
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|++.| |||||+..++..|.+.|++|.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 577787665 69999999999999999999876
No 165
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=63.16 E-value=7.2 Score=43.86 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.1
Q ss_pred ceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 720 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 720 l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
+++|.|+| -.||||++.-+...|+..|++++++...|
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 36899999 67899999999999999999999997655
No 166
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=63.01 E-value=7.3 Score=43.38 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=27.5
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+++| ||||++.-++..|...|+||.+.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 467776654 79999999999999999999886
No 167
>COG2403 Predicted GTPase [General function prediction only]
Probab=62.40 E-value=11 Score=44.90 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=34.1
Q ss_pred CccEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 107 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 107 ~l~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
.-|+|.|+|| -|||.+++++..+|++.||++....-|.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPm 165 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPM 165 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCc
Confidence 3478888887 5999999999999999999999988886
No 168
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=62.22 E-value=18 Score=42.60 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEc----CCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHIS----GTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVt----GTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
..+.++-+.|.-.......+||.|- |=.|||-++.+|...|++.|+++|..+=.+
T Consensus 10 ~lr~~~y~~~~~~~~~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 10 NVRRFLYDLGLKKAKRAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred HHHHHHHHcCccccccCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3455555555543223467888873 888999999999999999999999886443
No 169
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.88 E-value=9.4 Score=46.21 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=24.8
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHH----CCCCeEEEcCc
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRS----HGFSTGFFSSP 755 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~----~G~rtGl~tSP 755 (1255)
++|.+.|. .|||||++-+++.|.. .|.++++.+.-
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D 215 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID 215 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence 34444443 3899999999998874 47888887653
No 170
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=60.88 E-value=11 Score=43.03 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=27.6
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+ |=-|||||+.-|+..|.+.|+||.++
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 567777 34579999999999999999999887
No 171
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=60.86 E-value=7.9 Score=47.37 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=29.8
Q ss_pred ccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
..+|.++|- .|||||++-++..|+..|+++++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 457777774 48999999999999999999999865
No 172
>PRK05439 pantothenate kinase; Provisional
Probab=60.37 E-value=29 Score=40.86 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.9
Q ss_pred ccEEEEcCC--CChhHHHHHHHHHHHHC--CCCeEEEc
Q psy15432 108 LNVIHISGT--KGKGSTCAYCESILRSH--GFSTGFFS 141 (1255)
Q Consensus 108 l~vIhVtGT--nGKgST~a~l~sIL~~~--G~k~Gl~t 141 (1255)
--+|+|||. .||||+|..|..+|... |.++.+.+
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 358999997 47999999999999864 56666544
No 173
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=60.24 E-value=11 Score=42.30 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=31.9
Q ss_pred ccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+++|.|+| -.||||++.-+...|++.|++++.+-..|
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 36899999 56899999999999999999999997655
No 174
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=60.16 E-value=8 Score=42.32 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=25.5
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+||.|| .|||||++=+++.++..|.++++.+.-
T Consensus 6 lvGptG-vGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 6 LVGPTG-VGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEESTT-SSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EECCCC-CchHhHHHHHHHHHhhccccceeecCC
Confidence 455566 489999999999999889999998754
No 175
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=60.08 E-value=8.1 Score=39.97 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=26.6
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
|+|+|.|- .||||.+..|-..|...|++++.+-.-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 57888885 589999999999999999999966443
No 176
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=60.00 E-value=21 Score=42.46 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCccCCCCccEEEE----cCCCChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhV----tGTnGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
..|+.+-+.|.........+||.| .|-.|||-++.+|...|++.|+++|..+=.
T Consensus 38 ~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 38 ALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred HHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 455566555544322246788877 588899999999999999999999998643
No 177
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=59.94 E-value=17 Score=42.86 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=32.6
Q ss_pred ccceEEEe----cCCCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 718 KKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 718 ~~l~vIhV----TGTnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
...|||.| .|=.|||-++.+|...|++.|+++|..+=.
T Consensus 26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred CCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 45788887 488899999999999999999999987543
No 178
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=59.73 E-value=8.4 Score=43.18 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=30.1
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
.+.+-||||. |||-+++.+.+.|+++|++++.|
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 3678899996 99999999999999999999888
No 179
>COG4240 Predicted kinase [General function prediction only]
Probab=58.43 E-value=17 Score=40.95 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCC-CCeEEEc
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHG-FSTGFFS 141 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G-~k~Gl~t 141 (1255)
++-...++.++.-.+....+--+++|.|. .||+|+++.|..+|.+.| ++|+.++
T Consensus 30 ~dl~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 30 QDLHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred HHHHHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 33444555554433322233348999996 589999999999999988 6887764
No 180
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=57.98 E-value=8.9 Score=43.63 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=26.4
Q ss_pred EEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.|+|.| =.||||||.-++..|...|+||.+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 466665 4579999999999999999999886
No 181
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=57.90 E-value=17 Score=41.37 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=29.4
Q ss_pred cceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++|.|| |--||||++..++..|...|+||-+.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789998 55689999999999999999999775
No 182
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=57.84 E-value=12 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=27.5
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
+|.|+|. .||||++..+...|+..|++++.+-..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3566664 389999999999999999999998643
No 183
>CHL00175 minD septum-site determining protein; Validated
Probab=57.53 E-value=12 Score=42.63 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=29.1
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-++|.|+++| ||||++.-++..|.+.|++|.++
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3688888765 79999999999999999999887
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=57.48 E-value=13 Score=44.06 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=30.7
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
..+|.++|.+ |||||++-++..|+..|+++++.++-
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4688888865 79999999999999999999987654
No 185
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=56.54 E-value=20 Score=42.45 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCcccccccceEEEe----cCCCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 701 DQVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 701 ~~~~~~L~~Lg~~~~~~~~l~vIhV----TGTnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
...+..+.+.| +++ -..|||.| .|=+|||-++-.++.-|++.|+++|.++=-
T Consensus 31 ~~~r~~~~~~g-~~~--~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 31 AGLRRKLAKKG-SYR--APVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred HHHHHHHhccc-ccc--CCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 34444555555 221 45678876 689999999999999999999999998644
No 186
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=56.54 E-value=14 Score=40.92 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=26.3
Q ss_pred EEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+|.|+ |--||||++.-++..|.+.|++|.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45555 55689999999999999999999887
No 187
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=56.32 E-value=24 Score=41.24 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhcCCccCCCCccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.-.+..+++.+++... ..+-++|.|+|.| ||||++.-++..|.+.|++|.+.
T Consensus 74 ~~~~l~~~l~~~~~~~--~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 74 AEGWLVELLADLDQSP--PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred CHHHHHHHHHhhccCC--CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 3446677777775322 1356889988776 69999999999999999998876
No 188
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=56.30 E-value=21 Score=42.52 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCcccccccceEEEe----cCCCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 702 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 702 ~~~~~L~~Lg~~~~~~~~l~vIhV----TGTnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..++.+-+.|.-.......|||.| .|-.|||-++.+|...|++.|+++|+.+=
T Consensus 38 ~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 94 (338)
T PRK01906 38 ALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSR 94 (338)
T ss_pred HHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEec
Confidence 344444444433222245788887 68899999999999999999999998754
No 189
>PRK15453 phosphoribulokinase; Provisional
Probab=56.26 E-value=11 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.7
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEE
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGF 751 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl 751 (1255)
+-++|+|||+. ||||+|..++.+|+..|.++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~v 38 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAV 38 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 35799999985 7999999999999987765433
No 190
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=55.93 E-value=13 Score=40.17 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=28.2
Q ss_pred EEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 110 VIHISGT---KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 110 vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.|-|+|| -|||++|.-+...|++.|.++|.|-
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~K 36 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFK 36 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5667877 4999999999999999999999873
No 191
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=55.63 E-value=16 Score=42.46 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=30.7
Q ss_pred CccEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE-cCCc
Q psy15432 107 KLNVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF-SSPH 144 (1255)
Q Consensus 107 ~l~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~-tSPh 144 (1255)
++++|.|. |--|||||+.-|+..|.+.|+||-++ .-|.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 56777776 45579999999999999999999888 4454
No 192
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=55.41 E-value=28 Score=41.21 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCccCCCCccEEEE----cCCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhV----tGTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
..|+.+-..|.-.......+||.| +|-.|||-++.+|...|++.|++++..+-.+
T Consensus 17 ~~R~~~y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 17 SLRNFLYDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred HHHHHHHhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 456666666655433457788887 5888999999999999999999999987655
No 193
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=55.23 E-value=8.8 Score=41.46 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.4
Q ss_pred EEEecC--CCCCccHHHHHHHHHHHCCCC
Q psy15432 722 VIHISG--TKGKGSTCAYCESILRSHGFS 748 (1255)
Q Consensus 722 vIhVTG--TnGKgST~aml~sILr~~G~r 748 (1255)
+|+|+| ..||||++..|..+|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688888 689999999999999998876
No 194
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=55.09 E-value=11 Score=46.03 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.7
Q ss_pred ceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 720 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 720 l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
+++|+|+| -.||||.+.-|-..|+..||||++....|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 36899999 67999999999999999999999987665
No 195
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=54.88 E-value=9.9 Score=41.06 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=27.7
Q ss_pred EEEecCC---CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHISGT---KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVTGT---nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.|-|||| .|||++|.-+...|++.|.|+|+|
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~ 35 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYF 35 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 4667777 599999999999999999999987
No 196
>COG4240 Predicted kinase [General function prediction only]
Probab=54.85 E-value=22 Score=40.13 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=39.6
Q ss_pred chHHHHHHHHHhcCcccccccceEEEecCC--CCCccHHHHHHHHHHHCC-CCeEEEc
Q psy15432 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHG-FSTGFFS 753 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGT--nGKgST~aml~sILr~~G-~rtGl~t 753 (1255)
.++-...+++++.-.+....+.-+++|.|. .||+|++..|..+|.+.| ++|+.++
T Consensus 29 ~~dl~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS 86 (300)
T COG4240 29 AQDLHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS 86 (300)
T ss_pred HHHHHHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee
Confidence 445555566665444333344559999996 689999999999999998 6887653
No 197
>PRK10037 cell division protein; Provisional
Probab=54.78 E-value=16 Score=41.10 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=27.5
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+..| ||||||.-++..|.+.|+||-++
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 577777554 79999999999999999999876
No 198
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=54.66 E-value=13 Score=41.74 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=27.6
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|++.| |||||+..++..|...|++|.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 567777665 69999999999999999999876
No 199
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=54.28 E-value=21 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.063 Sum_probs=26.8
Q ss_pred ccceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 718 KKLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 718 ~~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
.+.+.|-||||. |||+++..|.+.|+.. +..|.
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK 271 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAK 271 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEc
Confidence 456789999985 9999999999999985 55554
No 200
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.23 E-value=21 Score=43.54 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.7
Q ss_pred cEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 109 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
.+|-..| -.||||||+=|+.-|+..|+|+++...-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD 137 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD 137 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc
Confidence 3555555 3599999999999999999999998754
No 201
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=54.19 E-value=24 Score=41.79 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCccCCCCccEEEE----cCCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 88 VDQVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 88 l~~~~~~L~~Lg~~~~~~~~l~vIhV----tGTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+...+..+.+.| +. + -..+||.| .|-+|||-++..+..-|++.|+++|.++=.+
T Consensus 30 i~~~r~~~~~~g-~~-~-~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 30 IAGLRRKLAKKG-SY-R-APVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred HHHHHHHHhccc-cc-c-CCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 445666666666 22 2 25677765 5899999999999999999999999987543
No 202
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=54.06 E-value=12 Score=42.61 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=27.3
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|+|+| =-|||||+.-|+..|.+.|+||.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 5677773 4479999999999999999999887
No 203
>PRK06761 hypothetical protein; Provisional
Probab=53.90 E-value=1.3e+02 Score=35.09 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=42.1
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHH
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN 785 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~ 785 (1255)
++|-|+| -.||||++..+..-|...|+++..+.-+-.-...+- .++..++.+++........+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l~~~~~ 68 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLLSNYPD 68 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHHHhhhH
Confidence 4677777 468999999999999988998887654321111221 13455777777776655544
No 204
>PRK11670 antiporter inner membrane protein; Provisional
Probab=53.61 E-value=16 Score=43.92 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=29.1
Q ss_pred ccEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 108 LNVIHISGT---KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 108 l~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.++|.|+.. -|||||+.-|+..|.+.|+||++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 468999854 579999999999999999999986
No 205
>PRK07667 uridine kinase; Provisional
Probab=53.49 E-value=20 Score=38.76 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=31.3
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
.+|+|+| -.||||+|..|...|+..|.++.++....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 6999999 47899999999999999999887776654
No 206
>PRK10818 cell division inhibitor MinD; Provisional
Probab=53.49 E-value=16 Score=41.39 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=26.9
Q ss_pred cEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|++. -||||++..+++.|.+.|++|.+.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv 37 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56777655 479999999999999999998775
No 207
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=53.38 E-value=16 Score=40.19 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 117 KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 117 nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
-|||+++..+...|++.|++++.|-
T Consensus 11 ~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 11 VGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEe
Confidence 6999999999999999999999885
No 208
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=53.22 E-value=28 Score=41.24 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHhcCcccccccceEEEe----cCCCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 703 VVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 703 ~~~~L~~Lg~~~~~~~~l~vIhV----TGTnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
.+..+-+.|.-.......|||.| +|-.|||-++.+|...|++.|+++++.+-.+
T Consensus 18 ~R~~~y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 18 LRNFLYDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred HHHHHHhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 34444444433322356788887 6889999999999999999999999986543
No 209
>CHL00175 minD septum-site determining protein; Validated
Probab=53.04 E-value=13 Score=42.45 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=29.1
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
-++|.|+++| ||||++.-++..|...|+||.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4688888765 79999999999999999999886
No 210
>PRK15453 phosphoribulokinase; Provisional
Probab=52.82 E-value=18 Score=41.97 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=26.7
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEE
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGF 139 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl 139 (1255)
+-++|+|||+. ||||+|..++.+|+..|.++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~v 38 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAV 38 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 45799999985 7999999999999877755433
No 211
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.80 E-value=11 Score=45.52 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.0
Q ss_pred EEEcCCCChhHHHHHHHHHHHH----CCCCeEEEcCC
Q psy15432 111 IHISGTKGKGSTCAYCESILRS----HGFSTGFFSSP 143 (1255)
Q Consensus 111 IhVtGTnGKgST~a~l~sIL~~----~G~k~Gl~tSP 143 (1255)
++.+|+ |||||++-+++.|.. .|.++++.+.-
T Consensus 180 vGptGv-GKTTT~aKLA~~~~~~~~~~g~~V~lit~D 215 (388)
T PRK12723 180 VGPTGV-GKTTTIAKLAAIYGINSDDKSLNIKIITID 215 (388)
T ss_pred ECCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence 444443 899999999998874 47888887653
No 212
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=52.61 E-value=17 Score=41.39 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=26.6
Q ss_pred EEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.|.|.| =.||||||.-++..|.+.|+||.++
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 566664 5589999999999999999999887
No 213
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=51.87 E-value=45 Score=41.55 Aligned_cols=32 Identities=22% Similarity=0.057 Sum_probs=26.4
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.+.|-||||. |||++++.|.+.|++. +..|-
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK 271 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAK 271 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEc
Confidence 67789999986 9999999999999974 55443
No 214
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=51.79 E-value=15 Score=39.56 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.2
Q ss_pred EEEEcC--CCChhHHHHHHHHHHHHCCCC
Q psy15432 110 VIHISG--TKGKGSTCAYCESILRSHGFS 136 (1255)
Q Consensus 110 vIhVtG--TnGKgST~a~l~sIL~~~G~k 136 (1255)
+|+|+| ..||||++..|..+|.+.|.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688887 679999999999999998876
No 215
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=51.35 E-value=19 Score=44.29 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.6
Q ss_pred ccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+++|+|+| -.||||.+.=|-..|++.|||||.+-..|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 46899998 56999999999999999999999987666
No 216
>PRK11670 antiporter inner membrane protein; Provisional
Probab=51.06 E-value=15 Score=44.22 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=29.3
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
.++|.|+..| |||||+.-|+..|.+.|+||++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789998655 79999999999999999999986
No 217
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=50.94 E-value=19 Score=40.21 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=27.4
Q ss_pred EEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 110 VIHISGT---KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 110 vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.|-|||| -|||.+|..+...|++.|+++|.|-
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~K 38 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYK 38 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3556655 6999999999999999999999983
No 218
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=50.78 E-value=19 Score=41.87 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=26.0
Q ss_pred EEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+|.|. |=-|||||+..++++|.+.|+||.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 44444 55689999999999999999999876
No 219
>PRK00784 cobyric acid synthase; Provisional
Probab=50.65 E-value=15 Score=45.68 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.8
Q ss_pred cEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 109 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 109 ~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+.|-|||| -|||++++.|...|++.|++++.|-.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45778887 79999999999999999999998854
No 220
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=50.60 E-value=17 Score=38.55 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.4
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
++|.|.| -.||||.+..+...|+..|+++|.+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 6889998 568999999999999999999988753
No 221
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=50.58 E-value=22 Score=37.64 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.4
Q ss_pred cEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 109 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 109 ~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
++|.|+| -.||||.+.-+...|+..|+++|.+-.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 6888998 468999999999999999999998754
No 222
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=50.56 E-value=35 Score=41.91 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.6
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.-+|+|+|- .||||.+..|..+|+..|++++.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 458999996 579999999999999888877653
No 223
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=49.89 E-value=16 Score=43.90 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=29.6
Q ss_pred ccceEEEecC---CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 718 KKLNVIHISG---TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 718 ~~l~vIhVTG---TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++.++|.|+. --||||||.-++..|...|+||.+.
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3567888875 4579999999999999999999775
No 224
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=49.84 E-value=15 Score=41.47 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.5
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|-.||||||.-++..|...|+||.+.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 567789999999999999999999876
No 225
>PRK07667 uridine kinase; Provisional
Probab=49.82 E-value=35 Score=36.97 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=31.4
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
.+|+|+|- .||||+|..+...|++.|.++.++....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 69999985 6899999999999999999888876654
No 226
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=49.69 E-value=45 Score=39.35 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=33.6
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+.++|.|-||. ||=||+-.|...+++.|++.++..|-
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTg 186 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATG 186 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecC
Confidence 47799999995 99999999999999999999998764
No 227
>PRK10818 cell division inhibitor MinD; Provisional
Probab=49.68 E-value=15 Score=41.52 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=26.6
Q ss_pred eEEEecCC---CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGT---KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|++. -||||++..++..|...|++|.+.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv 37 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 46666655 479999999999999999998775
No 228
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=49.60 E-value=20 Score=40.93 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=26.9
Q ss_pred cEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+| =-||||||.-++..|.+.|+||-++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566664 4579999999999999999999876
No 229
>PRK10037 cell division protein; Provisional
Probab=49.57 E-value=16 Score=41.02 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=27.0
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+..| ||||||.-++..|.+.|+||-+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 466776555 79999999999999999999776
No 230
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=49.25 E-value=17 Score=40.56 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=38.5
Q ss_pred cceEEEecC--CCCCccHHHHHHHHHHHCCCCeE------EEcCcccccccceeeeCCeecC
Q psy15432 719 KLNVIHISG--TKGKGSTCAYCESILRSHGFSTG------FFSSPHLIEVRERIKLNGEPIS 772 (1255)
Q Consensus 719 ~l~vIhVTG--TnGKgST~aml~sILr~~G~rtG------l~tSPhL~~~~ERI~InG~pIs 772 (1255)
+.-+|+||| ..||||+|..|...|... ++. +|.+.+...+.||..+|..-.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~ 66 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPE 66 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccChh
Confidence 346999999 679999999999999855 333 3566666677778777766544
No 231
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=49.09 E-value=16 Score=41.54 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=26.2
Q ss_pred eEEEec--CCCCCccHHHHHHHHHHH-CCCCeEEE
Q psy15432 721 NVIHIS--GTKGKGSTCAYCESILRS-HGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVT--GTnGKgST~aml~sILr~-~G~rtGl~ 752 (1255)
++|.|+ |=-|||||+.-++..|.. .|+||.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 466666 344699999999999997 69999887
No 232
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=49.04 E-value=16 Score=40.85 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=26.5
Q ss_pred EEecCC---CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 723 IHISGT---KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 723 IhVTGT---nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
|-|||| .|||.++..+...|++.|+++|.|
T Consensus 5 ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 455555 799999999999999999999998
No 233
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=48.92 E-value=20 Score=37.92 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=25.4
Q ss_pred EEEcCCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 111 IHISGTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 111 IhVtGTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+.-|=-||||++..++..|...|++|.++-
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EcCCCCccHHHHHHHHHhccccccccccccc
Confidence 3445667899999999999999999998874
No 234
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=48.90 E-value=22 Score=40.36 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.7
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+ |=-||||||.-|++.|.+.|+||-+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 466666 45589999999999999999998776
No 235
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=48.74 E-value=58 Score=34.20 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=27.3
Q ss_pred EEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 722 VIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 722 vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
++.++| -.||||++..++..|...|+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 455555 4589999999999999999999887654
No 236
>PRK05439 pantothenate kinase; Provisional
Probab=48.10 E-value=61 Score=38.23 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.2
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHC--CCCeEEEc
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSH--GFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~--G~rtGl~t 753 (1255)
.--+|+|||+ .||||+|..|..+|... |.++.+.+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 3468999996 57999999999999864 55665543
No 237
>PRK10867 signal recognition particle protein; Provisional
Probab=48.05 E-value=46 Score=41.05 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=29.2
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHC-CCCeEEEcC
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSH-GFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~-G~rtGl~tS 754 (1255)
..+|.++|- .|||||++-++.-|+.. |+++.+.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 467777774 58999999999999988 999988754
No 238
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=47.49 E-value=1.6e+02 Score=36.49 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=27.7
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHH-HCCCCeEEEcCC
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILR-SHGFSTGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~-~~G~k~Gl~tSP 143 (1255)
.+|.++|. -|||||++-++..|. +.|+++++.+.-
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 46666664 489999999999987 589999988653
No 239
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=47.28 E-value=19 Score=38.10 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=26.7
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+.+.-|=.||||++..++..|...|++|.++-
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccc
Confidence 45566777999999999999999999998873
No 240
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=47.21 E-value=21 Score=37.21 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEcCCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 112 HISGTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 112 hVtGTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.-.|--||||++..++..|.+.|++|.++
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 33566799999999999999999999887
No 241
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=47.09 E-value=19 Score=37.60 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.8
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+..-.|-.||||++..++..|...|++|.+.
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4445677799999999999999999999887
No 242
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=46.75 E-value=25 Score=40.61 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.4
Q ss_pred ccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
+++|+|+| -.||||.+.-|...|++.| +++++-..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd 37 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHM 37 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEc
Confidence 36899999 6799999999999999999 89988653
No 243
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.49 E-value=39 Score=42.15 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=27.4
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHH-HCC-CCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILR-SHG-FSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~-~~G-~k~Gl~tS 142 (1255)
+-.+|.+.|-| |||||++.|+..+. ..| .++++.+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 34678888876 69999999999884 455 47887754
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=46.18 E-value=36 Score=39.34 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.8
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHC-C-CCeEEEcCC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSH-G-FSTGFFSSP 143 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~-G-~k~Gl~tSP 143 (1255)
+-.+|.+.|-+ |||||++-++.-+... | +++++++.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 34577777754 7999999999988765 5 899998754
No 245
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=45.82 E-value=24 Score=39.54 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.9
Q ss_pred eEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|-|| |--|||||++-+...|...|.||.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 577777 55689999999999999999999886
No 246
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=45.44 E-value=28 Score=41.29 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 106 KKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 106 ~~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++.++|.|+| .-||||+++.++..|.+.|+||++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3567888875 6689999999999999999999987
No 247
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=45.29 E-value=20 Score=41.41 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.7
Q ss_pred ceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+++|+|+| -.||||.+.-|...|++.| ++++.-..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd 37 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHM 37 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEc
Confidence 36899999 7899999999999999999 89988653
No 248
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=45.22 E-value=24 Score=39.66 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=28.6
Q ss_pred cEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++|-|| |--|||||+|-+...|...|.||.+.-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD 38 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLID 38 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEe
Confidence 477787 667899999999999999999998864
No 249
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=44.93 E-value=18 Score=38.05 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=27.6
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+|.|+|. .||||++..+...|+..|++++.+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3566663 489999999999999999999998643
No 250
>PRK10867 signal recognition particle protein; Provisional
Probab=44.87 E-value=1.5e+02 Score=36.76 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.3
Q ss_pred ccEEEEcCC--CChhHHHHHHHHHHHHC-CCCeEEEcCC
Q psy15432 108 LNVIHISGT--KGKGSTCAYCESILRSH-GFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGT--nGKgST~a~l~sIL~~~-G~k~Gl~tSP 143 (1255)
..+|.++|- .|||||++-++..|... |+++++.+.-
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 457777774 48999999999999888 9999987653
No 251
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.85 E-value=45 Score=40.79 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.7
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
++|.+.|-+ |||||++-|+.-|...|+++++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 566666644 7999999999999999999999876
No 252
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=44.66 E-value=29 Score=37.86 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=25.4
Q ss_pred ccEE-EEcCCCChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVI-HISGTKGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vI-hVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
+.+| +.+|| |||++...+...+.+.|+++...+--
T Consensus 20 ~~~l~G~aGt-GKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 20 VSVLQGPAGT-GKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp EEEEEESTTS-THHHHHHHHHHHHHHTT--EEEEESS
T ss_pred EEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3443 66775 89999999999999999887666543
No 253
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=44.32 E-value=20 Score=39.42 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 729 KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 729 nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
.|||+++..+...|++.|++++.|-
T Consensus 11 ~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 11 VGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred cCHHHHHHHHHHHHHHcCCceEEEe
Confidence 6999999999999999999999885
No 254
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=44.25 E-value=25 Score=39.17 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.0
Q ss_pred EEEEcCCC--ChhHHHHHHHHHHHH
Q psy15432 110 VIHISGTK--GKGSTCAYCESILRS 132 (1255)
Q Consensus 110 vIhVtGTn--GKgST~a~l~sIL~~ 132 (1255)
+|+|+|.+ ||||++..|..+|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 57888876 799999999999986
No 255
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=43.95 E-value=34 Score=40.10 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=30.4
Q ss_pred cceEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 719 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 719 ~l~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+-++|++-|| -||=||+-+|...|++.|+++++..|-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 4578888887 599999999999999999999998774
No 256
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=43.86 E-value=27 Score=39.86 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.2
Q ss_pred EEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 110 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 110 vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+|.|+ |--||+||+.=++..|...|+|||++-
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD 36 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLD 36 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45565 556899999999999999999999973
No 257
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=43.78 E-value=28 Score=39.66 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=26.4
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHH-CCCCeEEE
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRS-HGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~-~G~k~Gl~ 140 (1255)
++|.|+ |=-||||||.-++..|.+ .|+||.++
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 466676 444699999999999997 69999887
No 258
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=43.76 E-value=33 Score=38.73 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=31.4
Q ss_pred eEEEec---CCCCCccHHHHHHHHHHHCCCCeEEEc---Ccccccccce
Q psy15432 721 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS---SPHLIEVRER 763 (1255)
Q Consensus 721 ~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~t---SPhL~~~~ER 763 (1255)
++|-++ |=.||||++-+|++.|.+.|-+|.++- .-||...+++
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~ 50 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAEN 50 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHh
Confidence 455555 455899999999999999999999983 2344444444
No 259
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.47 E-value=4.8e+02 Score=32.33 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.6
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHH-HCCCCeEEEcC
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILR-SHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr-~~G~rtGl~tS 754 (1255)
..+|.+.|. .|||||++-++..|+ ..|+++.+.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346666663 689999999999987 57999988754
No 260
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=42.43 E-value=28 Score=40.27 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.8
Q ss_pred EEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 110 VIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 110 vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+|+|||.. ||||++.-+..+|++.|.++.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 58899964 799999999999999888776653
No 261
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=41.45 E-value=24 Score=38.21 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=18.5
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCe
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFST 137 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~ 137 (1255)
.|.|||| -||||+|..|+ ..|+++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 6899999 47999998777 456654
No 262
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=41.37 E-value=35 Score=34.87 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=25.6
Q ss_pred cEEEEcC---CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISG---TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtG---TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
|+|+|.| --|||+++.-++..|.+.|.+|.++
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vlli 35 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLI 35 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 4566665 5599999999999999999997765
No 263
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=41.10 E-value=24 Score=37.88 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=27.1
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+|+|+|. .||||.|..+...|+..|.++..++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~ 35 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISL 35 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEeh
Confidence 4778884 68999999999999998888776643
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=40.91 E-value=51 Score=40.67 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=28.9
Q ss_pred ccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
..+|.++|- .||||||+-++..|++.|+++++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 346666663 489999999999999999999987654
No 265
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=40.67 E-value=32 Score=40.16 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.4
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSH 133 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~ 133 (1255)
--+|+|+|.+ ||||++.++..+|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3599999987 7999999999999853
No 266
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=40.40 E-value=29 Score=44.50 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=34.0
Q ss_pred ccceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 718 KKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 718 ~~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
...++|+|.| -.||||.+.-+-..|++.|||+|.....|
T Consensus 8 ~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 8 LSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 4578999999 56899999999999999999999997655
No 267
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=40.09 E-value=21 Score=38.67 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=18.2
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCe
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFST 749 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rt 749 (1255)
.|.|||| -||||+|..|+ ..||++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 5899999 56888888766 556654
No 268
>KOG3022|consensus
Probab=40.09 E-value=34 Score=39.55 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=34.5
Q ss_pred cEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE-------cCCcccccceeE
Q psy15432 109 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF-------SSPHLIEVRERI 152 (1255)
Q Consensus 109 ~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~-------tSPhL~~~rERI 152 (1255)
.+|.|+ |--||+||++.++..|...|+++|++ +=|.+.....|.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~ 101 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV 101 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce
Confidence 377776 67799999999999999999999996 335555555554
No 269
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=40.03 E-value=40 Score=43.18 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=34.4
Q ss_pred CCCccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 105 IKKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 105 ~~~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
...+++|+|.| =.||||.+.=+-..|++.|+|+|.+-..|
T Consensus 7 ~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 7 PLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 34578999999 56899999999999999999999997655
No 270
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=39.89 E-value=27 Score=39.49 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=24.0
Q ss_pred cCCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 114 SGTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 114 tGTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-|=-||||||.-|+..|.+.|+||-++
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 366689999999999999999999776
No 271
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.78 E-value=69 Score=39.30 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=29.7
Q ss_pred ceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|-..| -.||||||+=|+.-|+..|+|+++...-
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD 137 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD 137 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc
Confidence 34666666 4699999999999999999999997653
No 272
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=39.22 E-value=20 Score=40.45 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=25.5
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|. |=-||||||.-|++.|.+.| ||.++
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 455555 55689999999999999999 98776
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=38.94 E-value=45 Score=41.15 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=29.3
Q ss_pred ceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|.++| -.|||||++-++..|+..|+++++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45666666 3589999999999999999999987654
No 274
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=38.91 E-value=42 Score=40.29 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=32.5
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
+.++|.|+|. .||||.+.-+-..|+..||++|.....|
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 4689999994 5899999999999999999999987544
No 275
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.56 E-value=24 Score=40.01 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=25.2
Q ss_pred EEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 723 IHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 723 IhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
|.|+| =-||||||.-++..|...|+||.+.
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 45554 5579999999999999999999776
No 276
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=38.45 E-value=31 Score=35.25 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=25.1
Q ss_pred eEEEecC---CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISG---TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTG---TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
|+|+|.| --|||+++.-++..|.+.|.+|.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vlli 35 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLI 35 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 3455555 6699999999999999999997665
No 277
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=37.98 E-value=24 Score=39.99 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=24.1
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|=-||||||.-|+..|...|+||-+.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 466789999999999999999999776
No 278
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=37.90 E-value=2.3e+02 Score=32.31 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=24.6
Q ss_pred cCCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 114 SGTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 114 tGTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-|--|||++++.++..|...|.++.++
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 367899999999999999999999888
No 279
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=37.77 E-value=90 Score=35.46 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=55.4
Q ss_pred CCCCCccHHHHHHHHHHHCCCCeEEEcC-cccccccceeeeC---------C------eecChhh-hhhHHHHHHHHHHH
Q psy15432 727 GTKGKGSTCAYCESILRSHGFSTGFFSS-PHLIEVRERIKLN---------G------EPISYDK-FTKYFWTVYNALHA 789 (1255)
Q Consensus 727 GTnGKgST~aml~sILr~~G~rtGl~tS-PhL~~~~ERI~In---------G------~pIs~~~-f~~~~~~v~~~l~~ 789 (1255)
|--||||+++-++..+.+.|+||-+... |. .++...+.+. | ..+..+. ..++..++.+.+..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~~~~~~~~ 87 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQEVLEPIEA 87 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999988754 21 1111111100 1 1122222 22233333333332
Q ss_pred H---------hhcCCCCCcHHHHHHHHHHHhhhc-CCCCEEEEec
Q psy15432 790 K---------RKHAEDMPAYFKFLTVMSFYVFVK-EKPDAVIMEV 824 (1255)
Q Consensus 790 ~---------~~~~~~~pt~Fe~lT~mAf~~F~~-~~vD~aVlEV 824 (1255)
. .......|..-|++.+..|.-+++ .+.|++|+-+
T Consensus 88 ~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDt 132 (254)
T cd00550 88 NLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDT 132 (254)
T ss_pred hccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 2 001123488888888888876654 5688888877
No 280
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=37.63 E-value=26 Score=35.80 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 729 KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 729 nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
.|||+++.-+...|++.|++++.|-
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~k 34 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7999999999999999999999983
No 281
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=37.07 E-value=41 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=27.0
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+|+|+|. .||||.|..+...|...|.++..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~ 35 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISL 35 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEeh
Confidence 4677775 58999999999999998888776643
No 282
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=36.94 E-value=30 Score=43.09 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=27.0
Q ss_pred EcCC---CChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 113 ISGT---KGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 113 VtGT---nGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
|||| -|||.+|+.|..+|++.|++++-|-.-
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4544 699999999999999999999988764
No 283
>PRK13236 nitrogenase reductase; Reviewed
Probab=36.90 E-value=33 Score=39.87 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=29.0
Q ss_pred CccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++++|.|.| =-|||||+.-|+..|.+.|+||.++
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 456777764 4579999999999999999999998
No 284
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=36.86 E-value=70 Score=38.40 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=40.3
Q ss_pred cchHHHHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 86 VQVDQVVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
..-++.+++.+....+. ..+.++|.|+|. .||||.+.-+-..|++.|+++|..-..|
T Consensus 185 NTpeDl~~l~~~~~~~~--~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 185 NTPEDLEQLRAIPDGTT--TGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CCHHHHHHHhhhhhccc--CCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 34455555544433221 125689999994 5899999999999999999999987544
No 285
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=36.81 E-value=29 Score=40.16 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=26.8
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+|+|||. .||||++.-+..+|+..|.++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~ 34 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVE 34 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5899996 4799999999999999998776653
No 286
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=36.43 E-value=36 Score=34.75 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=25.4
Q ss_pred EEcCC-CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 112 HISGT-KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 112 hVtGT-nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
-|||| -|||+++.-+...|++.|++++.|-
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k 34 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444 5999999999999999999999984
No 287
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=36.29 E-value=29 Score=42.04 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=30.0
Q ss_pred ccEEEEcCCCC--hhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhH
Q psy15432 108 LNVIHISGTKG--KGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 167 (1255)
Q Consensus 108 l~vIhVtGTnG--KgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~ 167 (1255)
--++-++|.|| |+|.|.++. |+|- |. .-+|++||+|++.+....|
T Consensus 349 GelvFliG~NGsGKST~~~LLt----------GL~~-Pq----sG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 349 GELVFLIGGNGSGKSTLAMLLT----------GLYQ-PQ----SGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred CcEEEEECCCCCcHHHHHHHHh----------cccC-CC----CCceeECCccCCCCCHHHH
Confidence 34788999985 666665554 4442 11 2359999999998765554
No 288
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=35.83 E-value=49 Score=37.44 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.7
Q ss_pred cEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++|-++ |=-||||++.+|++.|.+.|.+|.++-
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566665 555899999999999999999999984
No 289
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=35.37 E-value=50 Score=31.51 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=26.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 110 VIHISGTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 110 vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+++--|--||||+|+-++..|.+.|.++.+.-
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d 35 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLID 35 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34455788999999999999999999988873
No 290
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.33 E-value=33 Score=42.05 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=27.4
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHH-HHCCCCeEEEcCC
Q psy15432 109 NVIHISGTK--GKGSTCAYCESIL-RSHGFSTGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL-~~~G~k~Gl~tSP 143 (1255)
.+|.|.|.+ |||||++-++.-+ ...|+++++++.-
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 567777754 7999999998754 5779999988754
No 291
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=35.24 E-value=28 Score=42.05 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=30.9
Q ss_pred ccceEEEecCCCCCc--cHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhH
Q psy15432 718 KKLNVIHISGTKGKG--STCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKY 779 (1255)
Q Consensus 718 ~~l~vIhVTGTnGKg--ST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~ 779 (1255)
++--++-++|.||-| |.|.++ ||+|.-- ..+|++||+|++.+...+|
T Consensus 347 krGelvFliG~NGsGKST~~~LL----------tGL~~Pq-----sG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLL----------TGLYQPQ-----SGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHH----------hcccCCC-----CCceeECCccCCCCCHHHH
Confidence 445578899998755 444433 3555211 2469999999998876554
No 292
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=34.78 E-value=82 Score=33.99 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHCCCCeEEEcCccccc---------------------------ccceeeeCCeecChhh
Q psy15432 733 STCAYCESILRSHGFSTGFFSSPHLIE---------------------------VRERIKLNGEPISYDK 775 (1255)
Q Consensus 733 ST~aml~sILr~~G~rtGl~tSPhL~~---------------------------~~ERI~InG~pIs~~~ 775 (1255)
+|+.++.+++...|-|+|++++.+..+ +.||+..+|..+.+-+
T Consensus 63 gTT~~tNAl~e~~g~~v~li~~~G~~d~l~~~~~~~~~~~~~~~~lv~~~~~~~v~gr~~~~G~~i~~ld 132 (176)
T PF05378_consen 63 GTTVATNALLERKGARVGLITTGGFGDVLEIGRQWRPDLFDLQDPLVPRERVFEVDGRIDADGEVIEPLD 132 (176)
T ss_pred ccHHHHHHHHhccCCCceEEeccCcHhhcchhhccCCcccccccccccccCEEEECCccccCcEEecCCC
Confidence 457889999999999999988764333 5677777777766544
No 293
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=34.62 E-value=42 Score=39.90 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.1
Q ss_pred ccceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 718 KKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 718 ~~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.+.++|.|+| .-||||+++-++..|...|+||++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567888776 5689999999999999999999987
No 294
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=34.62 E-value=40 Score=39.96 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=29.4
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+..||-+.|.| |||||.+=|++.|.+.|+++-+-.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA 174 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA 174 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence 46788888877 699999999999999999986654
No 295
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=34.61 E-value=42 Score=32.02 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=26.9
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+++--|--||||+|..++..|...|.++.+.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~ 34 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLI 34 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4556678899999999999999999988776
No 296
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=34.58 E-value=37 Score=39.38 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
|--||||||.-++..|.+.|+||-++
T Consensus 9 GGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 9 GGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56689999999999999999998775
No 297
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=34.36 E-value=73 Score=34.36 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHCCCCeEEEcCCcccc
Q psy15432 121 STCAYCESILRSHGFSTGFFSSPHLIE 147 (1255)
Q Consensus 121 ST~a~l~sIL~~~G~k~Gl~tSPhL~~ 147 (1255)
+|+.++..+++..|-|+|++++....+
T Consensus 63 gTT~~tNAl~e~~g~~v~li~~~G~~d 89 (176)
T PF05378_consen 63 GTTVATNALLERKGARVGLITTGGFGD 89 (176)
T ss_pred ccHHHHHHHHhccCCCceEEeccCcHh
Confidence 457788999999999999998875444
No 298
>PLN02796 D-glycerate 3-kinase
Probab=34.34 E-value=57 Score=39.03 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.6
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-+|+|+|.+ ||||++..|..+|...|+++|.+
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~I 134 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASL 134 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEE
Confidence 479999975 79999999999998877776653
No 299
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=34.23 E-value=1.2e+02 Score=35.50 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=59.7
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEEcCcc---cccc------cceeeeCC------eecChhh-hhhHHHHHHHHHH-
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFFSSPH---LIEV------RERIKLNG------EPISYDK-FTKYFWTVYNALH- 788 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~tSPh---L~~~------~ERI~InG------~pIs~~~-f~~~~~~v~~~l~- 788 (1255)
-|-.||||+++.++--+...|+||-+.++-. |-++ ++-.+|.| ..|+... +.+++.++...+.
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~~~~~~~ 88 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEVQKDLSS 88 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHHHHGCST
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHHHhhhcc
Confidence 4688999999999999999999999886521 1111 12233442 2233322 2333333332111
Q ss_pred --------HHh-hcCCCCCcHHHHHHHHHHHhhhc-CCCCEEEEecccC
Q psy15432 789 --------AKR-KHAEDMPAYFKFLTVMSFYVFVK-EKPDAVIMEVGIG 827 (1255)
Q Consensus 789 --------~~~-~~~~~~pt~Fe~lT~mAf~~F~~-~~vD~aVlEVG~G 827 (1255)
..- ..-...|..-|++.+..+.-..+ .+.|++|+-+.-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~pt 137 (305)
T PF02374_consen 89 LLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPT 137 (305)
T ss_dssp CHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSS
T ss_pred chhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCc
Confidence 000 11344588888888888777664 7899999998544
No 300
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.23 E-value=44 Score=38.09 Aligned_cols=30 Identities=23% Similarity=0.120 Sum_probs=24.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHCCCCeEE
Q psy15432 110 VIHISGTKGKGSTCAYCESILRSHGFSTGF 139 (1255)
Q Consensus 110 vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl 139 (1255)
++++.|=-||||+++=++..|.+.|.+|-.
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 344455668999999999999999998754
No 301
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=33.67 E-value=38 Score=38.95 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred eEEEec---CCCCCccHHHHHHHHHHHCCCCe-EEE-cCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHh-hc-
Q psy15432 721 NVIHIS---GTKGKGSTCAYCESILRSHGFST-GFF-SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKR-KH- 793 (1255)
Q Consensus 721 ~vIhVT---GTnGKgST~aml~sILr~~G~rt-Gl~-tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~-~~- 793 (1255)
++|.|+ |--||||+++=+.+++.+.+.++ .++ .-+.+-++.-++.+.+.|.+-..+..-...+.+.+.... ..
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~gl 82 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDGL 82 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCCE
Confidence 467777 67799999999966665555444 444 334444444445444444332222222222222222221 00
Q ss_pred ----CCCCCcHHHHHHHHHHHhh---hcCCCCEEEEecccCCccccccccC-CCcEEEEcCCCchh
Q psy15432 794 ----AEDMPAYFKFLTVMSFYVF---VKEKPDAVIMEVGIGGRYDNTNIIP-NTAVVGITSLGYDH 851 (1255)
Q Consensus 794 ----~~~~pt~Fe~lT~mAf~~F---~~~~vD~aVlEVG~GGr~D~TNvi~-~P~VavITnIg~DH 851 (1255)
+...+.-|.-+..-.+.-+ +....|++++-+|.|=..|.+..+. .-.+.+||+-..+-
T Consensus 83 ~vipg~~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~s 148 (262)
T COG0455 83 YVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTS 148 (262)
T ss_pred EEeeCCCChHHHhhcCHHHHHHHHHHHHhcCCEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcch
Confidence 1111222222222211111 2234499999999994444444433 22455666666543
No 302
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.57 E-value=64 Score=40.36 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=26.8
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHH-HCC-CCeEEEcC
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILR-SHG-FSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr-~~G-~rtGl~tS 754 (1255)
+-.+|.+.|-| |||||++.|+..+. ..| .++++.+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~ 294 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT 294 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 34677777765 69999999999884 456 47877653
No 303
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.52 E-value=32 Score=39.94 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=30.6
Q ss_pred cceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE-cCcc
Q psy15432 719 KLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF-SSPH 756 (1255)
Q Consensus 719 ~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~-tSPh 756 (1255)
++++|.|-| =-|||||+.-|+..|.+.|+||.++ .-|+
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 457777755 4579999999999999999999998 3343
No 304
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=33.36 E-value=50 Score=36.00 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=22.8
Q ss_pred EEecCCCCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 723 IHISGTKGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 723 IhVTGTnGKgST~aml~sILr~~G~rtGl~t 753 (1255)
.+.+|| |||++...+...+...|+++...+
T Consensus 24 ~G~aGt-GKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 24 QGPAGT-GKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp EESTTS-THHHHHHHHHHHHHHTT--EEEEE
T ss_pred EECCCC-CHHHHHHHHHHHHHhCCCeEEEEC
Confidence 366774 899999999999999998876553
No 305
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=33.34 E-value=1.9e+02 Score=32.86 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
|--||||+++-++..+.+.|+||-++..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 4469999999999999999999988754
No 306
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=33.13 E-value=42 Score=38.95 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=30.0
Q ss_pred cceEEEec--CCCCCccHHHHHHHHHHHCCCCeEEE-cCcc
Q psy15432 719 KLNVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF-SSPH 756 (1255)
Q Consensus 719 ~l~vIhVT--GTnGKgST~aml~sILr~~G~rtGl~-tSPh 756 (1255)
++++|.|. |--|||||+.-|+..|.+.|+||-++ .-|+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 35677665 34569999999999999999999888 4454
No 307
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=33.09 E-value=30 Score=39.51 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=26.6
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|.| =-||||||.-++..|...|+||-+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 4555654 4579999999999999999999776
No 308
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=32.97 E-value=46 Score=35.10 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.2
Q ss_pred EEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 722 VIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 722 vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+|.|.| ..||||.+..|+..|...|+++.....|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567777 4689999999999999999998666555
No 309
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=32.92 E-value=91 Score=36.09 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCccCCCC--ccEEEEcCCCChhHHHHHHHHHHHHCCCC
Q psy15432 91 VVQYLGHLNITLDDIKK--LNVIHISGTKGKGSTCAYCESILRSHGFS 136 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~--l~vIhVtGTnGKgST~a~l~sIL~~~G~k 136 (1255)
+.+...++|.+... +. +-+.|=+|| |||+++..++.+|...|+.
T Consensus 43 ~~~~r~~~g~~~~~-~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 43 VERLRQRLGLASAA-PTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHHhCCCcCC-CCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 44455566765422 33 335677899 9999999999999888764
No 310
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.73 E-value=33 Score=39.78 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.8
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|--||||||.-++..|...|+||-+.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999999999999998765
No 311
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=32.66 E-value=43 Score=36.18 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.8
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..++|+|+|- .||||...-+-..|...|+++|...-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 4679999994 57888888888889999999998864
No 312
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=32.55 E-value=78 Score=41.60 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.5
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
..++|.||++. ||||++.-++..|...|+||-+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45799999877 99999999999999999998775
No 313
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=32.15 E-value=41 Score=38.27 Aligned_cols=30 Identities=23% Similarity=0.120 Sum_probs=25.0
Q ss_pred EEEecCCCCCccHHHHHHHHHHHCCCCeEE
Q psy15432 722 VIHISGTKGKGSTCAYCESILRSHGFSTGF 751 (1255)
Q Consensus 722 vIhVTGTnGKgST~aml~sILr~~G~rtGl 751 (1255)
++++.|=-||||+++-++..|+..|.+|-.
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 455566678999999999999999998744
No 314
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=32.00 E-value=67 Score=34.74 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.8
Q ss_pred CccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
..++|+|+|- .||||...-+-..|...|+++|.+--
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 4579999994 47888888888889988999998864
No 315
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=31.97 E-value=48 Score=34.77 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
|--||||++.-++..|.+.|+||-++
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 55689999999999999999999886
No 316
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=31.70 E-value=69 Score=36.44 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=39.3
Q ss_pred EEEecC--CCCCccHHHH-HHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhh
Q psy15432 722 VIHISG--TKGKGSTCAY-CESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK 792 (1255)
Q Consensus 722 vIhVTG--TnGKgST~am-l~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~ 792 (1255)
.|+||| -.||||.+++ +..++...||++-..-+--=.+.-+-+ |.+.+ ..++...++.+++...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~L---Gve~~----~~~lg~~~e~~~k~~~ 68 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL---GVEEP----MKYLGGKRELLKKRTG 68 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhc---CCCCC----CcccccHHHHHHHHhc
Confidence 477776 6899999999 777777777888665332212222333 54444 3445556666666543
No 317
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=31.61 E-value=34 Score=39.81 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.1
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|=-|||||+..++.+|...|+||.+.
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999999999999999776
No 318
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=31.54 E-value=51 Score=34.37 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 117 KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 117 nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-|||+++.-+...|++.|+|++++
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 599999999999999999999997
No 319
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=31.25 E-value=44 Score=35.07 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|--||||++.-++..|.+.|+||-+.
T Consensus 8 kgG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 8 KGGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CCcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 456689999999999999999999876
No 320
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=30.67 E-value=44 Score=36.97 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=26.0
Q ss_pred EEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+|.|+ |--||||++.-++..|...|+||.+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44444 55689999999999999999999887
No 321
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=30.13 E-value=2.6e+02 Score=29.40 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=48.7
Q ss_pred cchHHHHHHHHhhhhhhccCCCEEEEeeccCCcc-----ccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC
Q psy15432 185 MPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRY-----DNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 259 (1255)
Q Consensus 185 ~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~-----D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k 259 (1255)
.|.|+.-|... ...+|+++|=....-.. --++.+.+|.++|||-+.++. +-+++.+.|.-+-.
T Consensus 50 ~~~~y~aLi~t------a~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~------~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 50 NPRFYHALIVT------AQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPS------DDANIERAKKWLKN 117 (143)
T ss_pred CHHHHHHHHHH------HhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCcc------chhhHHHHHHHHHH
Confidence 46666666654 35788888877655211 123455689999999988762 45566665554443
Q ss_pred CCc--eeeeccCCCchHHHHHHHh
Q psy15432 260 PNC--IAVTSANQRGPCKQILLET 281 (1255)
Q Consensus 260 ~g~--~~v~~~~q~~e~~~vl~~~ 281 (1255)
.|. +..++. -..+-.+.|.+.
T Consensus 118 aG~~~if~vS~-~~~eGi~eL~~~ 140 (143)
T PF10662_consen 118 AGVKEIFEVSA-VTGEGIEELKDY 140 (143)
T ss_pred cCCCCeEEEEC-CCCcCHHHHHHH
Confidence 333 233333 345555555543
No 322
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.89 E-value=73 Score=41.82 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.3
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++|.||++. ||||++.-++..|...|+||-+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 45899999977 99999999999999999998765
No 323
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=29.89 E-value=80 Score=38.82 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=27.6
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHH--HCCCCeEEEcCC
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILR--SHGFSTGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~--~~G~k~Gl~tSP 143 (1255)
.+|.+.|-+ |||||++-++..+. ..|+++++++.-
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 467777654 79999999988886 568999998753
No 324
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=29.88 E-value=46 Score=34.74 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 729 KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 729 nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|||+++.-+...|++.|+|++++
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 799999999999999999999997
No 325
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.86 E-value=78 Score=38.80 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=28.2
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
++|.+.|- .|||||++-|+.-|...|+++++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 45666664 58999999999999999999998865
No 326
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.68 E-value=97 Score=40.88 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.9
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHH-HCC-CCeEEEcCC
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILR-SHG-FSTGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~-~~G-~k~Gl~tSP 143 (1255)
.+|.+.|-| |||||++.|+..+. ..| .++++.+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 577777766 69999999999884 566 588887754
No 327
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=29.61 E-value=40 Score=38.21 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=26.4
Q ss_pred eEEEec--CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVT--GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+ |=-||||||.-|+..|...|+||-+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 455665 45579999999999999999999776
No 328
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=29.44 E-value=2.9e+02 Score=31.56 Aligned_cols=28 Identities=21% Similarity=0.070 Sum_probs=25.3
Q ss_pred ecCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 725 ISGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 725 VTGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
--|-.|||++++.++..|...|.++.++
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567899999999999999999999887
No 329
>KOG3022|consensus
Probab=29.29 E-value=44 Score=38.73 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=34.7
Q ss_pred eEEEec---CCCCCccHHHHHHHHHHHCCCCeEEE-------cCccccccccee
Q psy15432 721 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFF-------SSPHLIEVRERI 764 (1255)
Q Consensus 721 ~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~-------tSPhL~~~~ERI 764 (1255)
.+|.|+ |--||+||+..++..|...|+++|++ +=|.+....+|.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~ 101 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV 101 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce
Confidence 367776 66789999999999999999999997 335566665555
No 330
>PRK11519 tyrosine kinase; Provisional
Probab=29.17 E-value=1e+02 Score=40.53 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.1
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++|.||+++ |||++|.-++..|...|.||-+.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 44799999854 99999999999999999999876
No 331
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=29.10 E-value=1.5e+02 Score=31.47 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=27.9
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
.+|.++| -.||||++..+...|...|+.+.++.+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 6899999 789999999999999888876555543
No 332
>PRK06696 uridine kinase; Validated
Probab=29.05 E-value=59 Score=35.98 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=26.9
Q ss_pred ceEEEecC--CCCCccHHHHHHHHHHHCCCCeEE
Q psy15432 720 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGF 751 (1255)
Q Consensus 720 l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl 751 (1255)
..+|+|+| -.||||.+..|+..|...|.++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 46999999 579999999999999988865543
No 333
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.85 E-value=1.1e+02 Score=37.82 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=26.4
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHH--HHCCCCeEEEcCCc
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESIL--RSHGFSTGFFSSPH 144 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL--~~~G~k~Gl~tSPh 144 (1255)
+-.+|++.|-| |||||.+.|+..+ +..+.++++.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 44678888876 6999999888654 33346777776554
No 334
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=28.60 E-value=37 Score=38.87 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=24.2
Q ss_pred EEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+|.|+ |=.||+||+.=++-.|...|+|||+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45554 45689999999999999999999996
No 335
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=1.4e+02 Score=35.45 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=33.4
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+.++|.|-||. ||=||+..+...+++.|+++++..|--
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgq 187 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQ 187 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCc
Confidence 35699999995 999999999999999999999886643
No 336
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.15 E-value=2.4e+02 Score=33.56 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=59.7
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEEcC-C--cccccceeEEeC-----------CeecCh-hhhhhHHHHH
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFFSS-P--HLIEVRERIKLN-----------GEPISY-DKFTKYFWTV 171 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~tS-P--hL~~~rERI~In-----------G~~is~-~~ft~~~~~v 171 (1255)
++|-++ |=-||||+++-++-.|.+.|.||-+.++ | .|.++... .|+ +..|+. ..+-+++.++
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~-elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v 81 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL-ELGHDPRKVGPNLDALELDPEKALEEYWDEV 81 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc-ccCCchhhcCCCCceeeecHHHHHHHHHHHH
Confidence 344455 5679999999999999999988877643 2 23333322 222 223332 3445555566
Q ss_pred HHHHHhhhhcc----------CCcchHHHHHHHHhhhhhh-ccCCCEEEEee
Q psy15432 172 YNALHAKRKHA----------EDMPAYFKFLTVMSFYVFV-KEKPDAVIMEV 212 (1255)
Q Consensus 172 ~~~l~~~~~~~----------~~~p~~Fe~Lt~~A~~~F~-~~~vD~aVlEv 212 (1255)
++.+...-... ...|..-|++.+..+.=|. +...|++|+-+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~Dt 133 (322)
T COG0003 82 KDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDT 133 (322)
T ss_pred HHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 65554432211 2346666666666555443 45578888876
No 337
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=27.94 E-value=3.7 Score=38.16 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=33.5
Q ss_pred ccccccccccccCCCceeEeecccccCCcccccccCCCC
Q psy15432 11 ELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKE 49 (1255)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (1255)
+|..+..+||++.++.+|++++|++.++..++.+...+.
T Consensus 1 ~i~~i~~dSr~v~~g~lF~a~~G~~~dG~~fi~~a~~~G 39 (83)
T PF01225_consen 1 HIHGISIDSRKVSPGALFFAIKGERVDGHDFIEDAIAKG 39 (83)
T ss_dssp EEEEEETTSGGHHHHHHHHHHTTSEEEEECSCHHHHHTT
T ss_pred CEEEEEECcCccChhHEEEEcCCccccchhhhhHHHHCC
Confidence 577889999999999999999999999888877755543
No 338
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=27.76 E-value=86 Score=33.04 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.3
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+|.|.|. .||||.+..|+..|...|+++-....|.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~ 38 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPG 38 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5677774 4899999999999999999986665553
No 339
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=27.59 E-value=3.2e+02 Score=35.96 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEcCCC--ChhHHHHHHHHHH
Q psy15432 110 VIHISGTK--GKGSTCAYCESIL 130 (1255)
Q Consensus 110 vIhVtGTn--GKgST~a~l~sIL 130 (1255)
+|.|+|+. ||||++..|+..|
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899985 7999999999887
No 340
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=27.54 E-value=73 Score=31.94 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
|-.|||+++..+...|.+.|+++.++..
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id~ 35 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAIDA 35 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6789999999999999999999887653
No 341
>PRK11519 tyrosine kinase; Provisional
Probab=27.48 E-value=86 Score=41.14 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.0
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++|.||+++ |||+++.-++..|...|.||-+.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 35799999854 89999999999999999999775
No 342
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=26.65 E-value=95 Score=36.35 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCcccccccceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 700 v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
-.+..++|.++.... ....++|.|+|.| ||||++.-++..|...|++|.+.
T Consensus 75 ~~~l~~~l~~~~~~~--~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 75 EGWLVELLADLDQSP--PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred HHHHHHHHHhhccCC--CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 344556666664222 1346788888766 69999999999999999999776
No 343
>PRK06696 uridine kinase; Validated
Probab=26.57 E-value=82 Score=34.85 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=26.5
Q ss_pred ccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEE
Q psy15432 108 LNVIHISG--TKGKGSTCAYCESILRSHGFSTGF 139 (1255)
Q Consensus 108 l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl 139 (1255)
-.+|+|+| -.||||++..|...|.+.|.++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 36999998 569999999999999988865543
No 344
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=26.47 E-value=76 Score=30.97 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=24.0
Q ss_pred cCCCChhHHHHHHHHHHHHC-CCCeEEE
Q psy15432 114 SGTKGKGSTCAYCESILRSH-GFSTGFF 140 (1255)
Q Consensus 114 tGTnGKgST~a~l~sIL~~~-G~k~Gl~ 140 (1255)
-|.-||||++.-++..|.+. |+++.+.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45668999999999999998 9999887
No 345
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=26.40 E-value=39 Score=37.52 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.5
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
.+|.|-|- .||||.+.++...|++.|+++-+..-|.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46777774 5899999999999999999999988887
No 346
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=26.05 E-value=41 Score=36.88 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=19.9
Q ss_pred cceEEEecCCCCCccHHH--HHHHHHHHCC
Q psy15432 719 KLNVIHISGTKGKGSTCA--YCESILRSHG 746 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~a--ml~sILr~~G 746 (1255)
+.|+|+|||+.|-|||+. -.+.|+....
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~ 33 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLN 33 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcC
Confidence 468999999999887654 3445665543
No 347
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=25.76 E-value=57 Score=36.31 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=19.7
Q ss_pred EEEecCCC--CCccHHHHHHHHHHH
Q psy15432 722 VIHISGTK--GKGSTCAYCESILRS 744 (1255)
Q Consensus 722 vIhVTGTn--GKgST~aml~sILr~ 744 (1255)
+|+|+|.+ ||||++..|...|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888865 799999999999986
No 348
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=25.61 E-value=69 Score=31.26 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=25.4
Q ss_pred EEecCCCCCccHHHHHHHHHHHC-CCCeEEE
Q psy15432 723 IHISGTKGKGSTCAYCESILRSH-GFSTGFF 752 (1255)
Q Consensus 723 IhVTGTnGKgST~aml~sILr~~-G~rtGl~ 752 (1255)
++--|--||||++.-++..|.+. |+++.+.
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 34456668999999999999998 9999887
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.52 E-value=1.1e+02 Score=32.22 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=27.6
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
++.++|. .||||++..+...|.+.|+++.++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 4555553 4899999999999999999998877553
No 350
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=25.47 E-value=1.1e+02 Score=37.91 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=33.4
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhh
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDK 163 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ 163 (1255)
-+|+|+|-+ ||||.+..|..+|+..|++++. |.+|+..++.++
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgv------------ISiDDfYLt~ee 257 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSAT------------LSIDDFYLTAEG 257 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEE------------EEECCccCChHH
Confidence 589999965 7999999999999888887766 456666665444
No 351
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=24.82 E-value=1e+02 Score=34.33 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=24.8
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFS 136 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k 136 (1255)
+-.+|+|+|-+ ||||.+..+..+|+..+-.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 44699999976 5999999999999987644
No 352
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=24.73 E-value=68 Score=32.14 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=24.2
Q ss_pred CCCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 727 GTKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 727 GTnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
|-.|||+++..++..|.+.|+++.++..
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id~ 35 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAIDA 35 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5789999999999999999999876643
No 353
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=24.70 E-value=81 Score=42.04 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=31.3
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.++.+-|+||| |||-+++.|.+.+++.|.+++.+
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 67899999998 99999999999999999988765
No 354
>PRK12377 putative replication protein; Provisional
Probab=24.40 E-value=80 Score=36.04 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=25.6
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 110 VIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 110 vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+.|=+|| |||..+.-+...|.+.|+++.+++.+.
T Consensus 106 l~G~~Gt-GKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 106 FSGKPGT-GKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred EECCCCC-CHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 3344454 999999999988888899887766554
No 355
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=24.39 E-value=77 Score=37.18 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=25.3
Q ss_pred cCCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 114 SGTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 114 tGTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
-|--||||+++.++--+.+.|+||-+.++
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 37889999999999999999999998865
No 356
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.97 E-value=90 Score=36.71 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=30.8
Q ss_pred CccEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 107 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 107 ~l~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+-++|++-|| -||=||+..|...|++.|+++++..|-.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQ 151 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQ 151 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SH
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 4578999998 5999999999999999999999987653
No 357
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=23.82 E-value=1e+02 Score=34.93 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCcccccccceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhh
Q psy15432 700 VDQVVQYLGHLNITLDDIKKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777 (1255)
Q Consensus 700 v~~~~~~L~~Lg~~~~~~~~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~ 777 (1255)
|.+.+..|..-+.|. +|-+.| +.|||.+..-|-.-|-..|++|-.|..|. .++.--
T Consensus 18 L~~lQ~~l~~~~~~v-------lIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt---------------~eE~~~ 75 (230)
T TIGR03707 18 LVKLQAWVKETGARV-------VIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPS---------------DRERTQ 75 (230)
T ss_pred HHHHHHHHHHcCCCE-------EEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC---------------HHHHcC
Confidence 444444454444442 677777 89999999999999999999998887774 445555
Q ss_pred hHHHHHHHHHH
Q psy15432 778 KYFWTVYNALH 788 (1255)
Q Consensus 778 ~~~~~v~~~l~ 788 (1255)
.++|+.|..|-
T Consensus 76 p~lwRfw~~lP 86 (230)
T TIGR03707 76 WYFQRYVQHLP 86 (230)
T ss_pred hHHHHHHHhCC
Confidence 67788777654
No 358
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=23.79 E-value=85 Score=36.25 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=25.9
Q ss_pred cEEEEcC----CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISG----TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtG----TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.|-||| .=|||-|++-+..+|++.|+++...
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~ 37 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI 37 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee
Confidence 5677887 5799999999999999999998664
No 359
>KOG0780|consensus
Probab=23.72 E-value=82 Score=38.18 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=28.8
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..||-..|- .||||||.=++..++..|||+++..-
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvca 137 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCA 137 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEee
Confidence 456666663 47999999999999999999998754
No 360
>PRK07413 hypothetical protein; Validated
Probab=23.34 E-value=1.8e+02 Score=35.43 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=26.3
Q ss_pred hcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCC
Q psy15432 710 LNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGF 747 (1255)
Q Consensus 710 Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~ 747 (1255)
+|.|. ..--.|||==-+|||.|++-+-..||++|.
T Consensus 193 ~~~~~---~~~g~i~VYTG~GKGKTTAAlGlAlRA~G~ 227 (382)
T PRK07413 193 LGVPF---NSSGGIEIYTGEGKGKSTSALGKALQAIGR 227 (382)
T ss_pred CCccc---CCCCeEEEEeCCCCCchHHHHHHHHHHhcC
Confidence 55554 222457775558999999999999999874
No 361
>PRK10536 hypothetical protein; Provisional
Probab=23.27 E-value=1.2e+02 Score=35.01 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=37.5
Q ss_pred EEEEcCCCChhHHHHHHHH-HHHHCCCCeEEEcCCcccccceeEEeCCeecC-hhhhhhHHHHHHHHHHhh
Q psy15432 110 VIHISGTKGKGSTCAYCES-ILRSHGFSTGFFSSPHLIEVRERIKLNGEPIS-YDKFTKYFWTVYNALHAK 178 (1255)
Q Consensus 110 vIhVtGTnGKgST~a~l~s-IL~~~G~k~Gl~tSPhL~~~rERI~InG~~is-~~~ft~~~~~v~~~l~~~ 178 (1255)
+++-+|| |||..+..+.. .|....++..+++-|.+ ...|.+.. -|=+ ++.+..|+.-+++.|+..
T Consensus 79 i~G~aGT-GKT~La~a~a~~~l~~~~~~kIiI~RP~v-~~ge~LGf--LPG~~~eK~~p~~~pi~D~L~~~ 145 (262)
T PRK10536 79 ATGEAGC-GKTWISAAKAAEALIHKDVDRIIVTRPVL-QADEDLGF--LPGDIAEKFAPYFRPVYDVLVRR 145 (262)
T ss_pred EECCCCC-CHHHHHHHHHHHHHhcCCeeEEEEeCCCC-CchhhhCc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444555 78777765554 44445688899999985 33343322 1212 255666666677776653
No 362
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.23 E-value=1.7e+02 Score=35.76 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=30.8
Q ss_pred CccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 107 KLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 107 ~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
+-++|.++| =.|||||++-++..+...|+++++++.-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456888888 4589999999999898889999998764
No 363
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.12 E-value=1.3e+02 Score=39.66 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=29.1
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
..++|.||+++ |||||+.-++..|...|+||-+.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 44788888654 89999999999999999998775
No 364
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=22.82 E-value=94 Score=33.13 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=27.0
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.+|.|.|. .||||.+.+|+.-|...|+++-..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46888884 699999999999999999887544
No 365
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=22.71 E-value=63 Score=35.90 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=24.5
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCC
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFS 748 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~r 748 (1255)
+-.+|+|+|-+ ||||.+..+...|+..+-.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 44699999976 5999999999999987643
No 366
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=22.54 E-value=34 Score=38.72 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=25.0
Q ss_pred eEEEec--CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVT--GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|. |=.||||||.-|+..|...| ||.+.
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 344444 56689999999999999999 98776
No 367
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.28 E-value=1.3e+02 Score=39.66 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.9
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++|.||+++ |||||+.-++..|...|+||-+.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 34788888765 89999999999999999998765
No 368
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=22.23 E-value=71 Score=35.54 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.6
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
..|.|-| -.||||.+.++...|++.|+++-+..-|.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 5677777 47899999999999999999998888886
No 369
>KOG3347|consensus
Probab=22.12 E-value=60 Score=34.57 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.8
Q ss_pred ceEEEecCC--CCCccHHHHHHHHH
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESIL 742 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sIL 742 (1255)
.|-|-|||| .||||+|..++..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 466889999 57999999998654
No 370
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=22.03 E-value=1.3e+02 Score=34.89 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=28.7
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHC-C-CCeEEEcCc
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSH-G-FSTGFFSSP 755 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~-G-~rtGl~tSP 755 (1255)
+-++|.+.|- .|||||++.++.-+... | +++++++.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3457777774 47999999999988765 5 899988753
No 371
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=21.95 E-value=1e+02 Score=35.56 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=22.5
Q ss_pred cEEEEc---CCCChhHHHHHHHHHHHHC-CCCeEEE
Q psy15432 109 NVIHIS---GTKGKGSTCAYCESILRSH-GFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt---GTnGKgST~a~l~sIL~~~-G~k~Gl~ 140 (1255)
++|.|+ |--||||+++=+.+++.+. |.++.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~i 38 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLI 38 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEE
Confidence 467777 6779999999995555555 4453554
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.86 E-value=1.3e+02 Score=37.12 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.8
Q ss_pred ceEEEecCCC--CCccHHHHHHHHHH--HCCCCeEEEcCc
Q psy15432 720 LNVIHISGTK--GKGSTCAYCESILR--SHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGTn--GKgST~aml~sILr--~~G~rtGl~tSP 755 (1255)
-++|.+.|.+ |||||++-++..+. ..|+++++++.-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3577777754 79999999998887 568999988753
No 373
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=21.71 E-value=3.4e+02 Score=30.21 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEE---------------------------cCCcccccce--eEEeCCee
Q psy15432 110 VIHISGTK--GKGSTCAYCESILRSHGFSTGFF---------------------------SSPHLIEVRE--RIKLNGEP 158 (1255)
Q Consensus 110 vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~---------------------------tSPhL~~~rE--RI~InG~~ 158 (1255)
+|+|+|.. ||||++..++.-|.-.-+.+|.+ -...+...+. ++.+||+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGED 83 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCcc
Q ss_pred cChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcc
Q psy15432 159 ISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYD 238 (1255)
Q Consensus 159 is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~D 238 (1255)
++.+-++............. |..-++|..+--....+.+ +||| ||.-++.+++..++.++-....+
T Consensus 84 v~~~ir~~~v~~~~s~~a~~-------p~VR~~l~~~qr~~a~~~~---~Vi~----Gr~~~~~v~~~a~~~ifl~a~~~ 149 (217)
T TIGR00017 84 VSEAIRTQEVANAASKVAVF-------PKVREALLKRQQALAKNDG---IIAD----GRDIGTVVFPNAEVKIFLDASVE 149 (217)
T ss_pred hHHHhcCHHHHHHHHHHcCC-------HHHHHHHHHHHHHHhhcCC---EEEE----EcCcceEEeCCCCEEEEEECCHH
No 374
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.48 E-value=2.8e+02 Score=32.99 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=41.8
Q ss_pred cEEEEcCC--CChhHH-HHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCc
Q psy15432 109 NVIHISGT--KGKGST-CAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 185 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST-~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~ 185 (1255)
-.|-|||- .||+|| ++|+.+|=+..-+..-.+- .|| .|.++-...|-.-+.-+.+.
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE---------------DPI------E~vh~skkslI~QREvG~dT 184 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE---------------DPI------EYVHESKKSLINQREVGRDT 184 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEec---------------Cch------HhhhcchHhhhhHHHhcccH
Confidence 47888884 478766 5567766655433221111 122 23322223333333335566
Q ss_pred chHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 186 PAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 186 p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
-+|..-|... .++.+|++++
T Consensus 185 ~sF~~aLraA-----LReDPDVIlv 204 (353)
T COG2805 185 LSFANALRAA-----LREDPDVILV 204 (353)
T ss_pred HHHHHHHHHH-----hhcCCCEEEE
Confidence 7888877776 7888887664
No 375
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=21.43 E-value=68 Score=31.20 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.4
Q ss_pred EEcCCCChhHHHHHHHHHH
Q psy15432 112 HISGTKGKGSTCAYCESIL 130 (1255)
Q Consensus 112 hVtGTnGKgST~a~l~sIL 130 (1255)
|++|| ||||++..|+..+
T Consensus 5 G~~Gs-GKtTia~~L~~~~ 22 (129)
T PF13238_consen 5 GIPGS-GKTTIAKELAERL 22 (129)
T ss_dssp ESTTS-SHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHH
Confidence 44444 9999999999987
No 376
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=21.06 E-value=80 Score=42.08 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=31.1
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
+++.+-||||| |||-+++.|.+.|++.|++++.+
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 57899999998 99999999999999999988765
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=20.92 E-value=2.1e+02 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCcccccccceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 701 DQVVQYLGHLNITLDDIKKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 701 ~~~~~~L~~Lg~~~~~~~~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+++..+|...-.. -..|.|+|.+ ||||+...+...+.. ..+...+-.|
T Consensus 12 ~~~~~~l~~~v~~------g~~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~ 61 (186)
T cd01130 12 PLQAAYLWLAVEA------RKNILISGGTGSGKTTLLNALLAFIPP-DERIITIEDT 61 (186)
T ss_pred HHHHHHHHHHHhC------CCEEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCc
Confidence 4566666654332 2578888866 677766666555542 3344444333
No 378
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=20.86 E-value=1.4e+02 Score=31.68 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=27.7
Q ss_pred cEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 109 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 109 ~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
.+|.++| -.||||++..+...|...|..+.++.+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~ 54 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG 54 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 5899999 789999999999999887765555443
No 379
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.46 E-value=1.1e+02 Score=34.39 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=23.7
Q ss_pred EEEcCCCChhHHHHHHHHHHH-HCCCCeEEE
Q psy15432 111 IHISGTKGKGSTCAYCESILR-SHGFSTGFF 140 (1255)
Q Consensus 111 IhVtGTnGKgST~a~l~sIL~-~~G~k~Gl~ 140 (1255)
....|=-|||||+..++..|. ..|+||-+.
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 334466789999999999999 556888774
No 380
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=20.27 E-value=79 Score=34.01 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=0.0
Q ss_pred EEEecC--CCCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 722 VIHISG--TKGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 722 vIhVTG--TnGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+|+|+| -.||||++.++..+| .+.++.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
No 381
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=20.17 E-value=88 Score=36.58 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.8
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHC
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSH 745 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~ 745 (1255)
..-+|+|+|.+ ||||++.++..+|...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34699999976 7999999999999854
Done!