Query psy15432
Match_columns 1255
No_of_seqs 778 out of 4431
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:56:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 1.7E-66 5.9E-71 617.9 42.2 395 50-650 12-435 (437)
2 2vos_A Folylpolyglutamate synt 100.0 2.6E-65 8.7E-70 615.4 40.8 416 52-651 25-483 (487)
3 1jbw_A Folylpolyglutamate synt 100.0 6.9E-64 2.4E-68 593.8 37.3 403 52-650 1-423 (428)
4 1o5z_A Folylpolyglutamate synt 100.0 1.2E-63 4.1E-68 594.3 38.7 346 51-512 12-375 (442)
5 3nrs_A Dihydrofolate:folylpoly 100.0 2.3E-63 7.7E-68 591.2 40.1 383 664-1166 14-426 (437)
6 1jbw_A Folylpolyglutamate synt 100.0 7.6E-62 2.6E-66 576.3 36.1 394 664-1167 1-415 (428)
7 2vos_A Folylpolyglutamate synt 100.0 2.7E-61 9.3E-66 580.4 37.5 400 664-1166 25-473 (487)
8 1o5z_A Folylpolyglutamate synt 100.0 1.9E-60 6.5E-65 566.8 35.8 391 661-1167 10-423 (442)
9 1w78_A FOLC bifunctional prote 100.0 1.9E-59 6.5E-64 554.7 39.9 395 51-651 10-415 (422)
10 1w78_A FOLC bifunctional prote 100.0 3.5E-57 1.2E-61 535.3 38.7 385 664-1167 11-406 (422)
11 1e8c_A UDP-N-acetylmuramoylala 100.0 7.8E-50 2.7E-54 482.2 27.3 364 9-519 18-419 (498)
12 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 5.3E-49 1.8E-53 478.7 29.9 414 9-646 59-510 (535)
13 1e8c_A UDP-N-acetylmuramoylala 100.0 2.2E-46 7.7E-51 452.0 24.3 400 633-1167 22-468 (498)
14 1gg4_A UDP-N-acetylmuramoylala 100.0 1.7E-45 5.8E-50 439.4 20.7 383 634-1177 26-447 (452)
15 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 1.1E-44 3.8E-49 440.8 26.2 395 632-1167 62-506 (535)
16 2am1_A SP protein, UDP-N-acety 100.0 4.5E-45 1.5E-49 435.8 20.1 388 632-1176 26-452 (454)
17 1gg4_A UDP-N-acetylmuramoylala 100.0 9.2E-45 3.1E-49 433.1 22.3 334 10-512 22-391 (452)
18 2am1_A SP protein, UDP-N-acety 100.0 3E-44 1E-48 428.7 22.7 335 10-514 24-389 (454)
19 1p3d_A UDP-N-acetylmuramate--a 100.0 1.4E-39 4.9E-44 390.5 28.2 318 108-647 118-469 (475)
20 2f00_A UDP-N-acetylmuramate--L 100.0 3.9E-39 1.3E-43 388.3 26.7 259 108-520 119-416 (491)
21 1j6u_A UDP-N-acetylmuramate-al 100.0 3.8E-38 1.3E-42 377.7 28.9 260 108-520 114-394 (469)
22 2x5o_A UDP-N-acetylmuramoylala 100.0 3.3E-38 1.1E-42 375.2 23.6 246 108-512 104-370 (439)
23 2x5o_A UDP-N-acetylmuramoylala 100.0 2.7E-38 9.3E-43 375.9 22.6 294 720-1171 104-420 (439)
24 1p3d_A UDP-N-acetylmuramate--a 100.0 8.5E-38 2.9E-42 375.1 26.2 304 720-1167 118-462 (475)
25 2f00_A UDP-N-acetylmuramate--L 100.0 1.3E-37 4.5E-42 375.0 23.9 313 720-1178 119-477 (491)
26 1j6u_A UDP-N-acetylmuramate-al 100.0 5.1E-37 1.7E-41 368.0 23.5 313 719-1176 113-454 (469)
27 4hv4_A UDP-N-acetylmuramate--L 100.0 3.5E-36 1.2E-40 362.9 28.2 318 109-645 123-476 (494)
28 3lk7_A UDP-N-acetylmuramoylala 100.0 5.4E-36 1.9E-40 357.3 25.6 298 721-1172 113-433 (451)
29 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.7E-34 5.7E-39 350.6 33.8 279 108-516 122-454 (524)
30 4hv4_A UDP-N-acetylmuramate--L 100.0 2.5E-35 8.6E-40 355.4 24.9 306 721-1167 123-471 (494)
31 3hn7_A UDP-N-acetylmuramate-L- 100.0 4.3E-35 1.5E-39 355.7 25.7 317 720-1167 122-506 (524)
32 3lk7_A UDP-N-acetylmuramoylala 100.0 3.8E-34 1.3E-38 341.4 31.9 246 108-511 112-378 (451)
33 3eag_A UDP-N-acetylmuramate:L- 99.9 9.3E-25 3.2E-29 250.1 18.2 197 685-939 85-306 (326)
34 3eag_A UDP-N-acetylmuramate:L- 99.9 5.2E-24 1.8E-28 243.9 20.1 175 108-328 108-307 (326)
35 3mvn_A UDP-N-acetylmuramate:L- 99.4 4.5E-12 1.5E-16 131.2 14.2 133 404-642 11-150 (163)
36 3mvn_A UDP-N-acetylmuramate:L- 99.2 2.2E-11 7.4E-16 126.1 11.3 130 1017-1167 12-150 (163)
37 4dzz_A Plasmid partitioning pr 90.5 0.18 6.3E-06 52.1 4.4 34 720-753 1-37 (206)
38 3fwy_A Light-independent proto 88.3 0.29 9.8E-06 55.6 4.1 36 717-752 45-82 (314)
39 3fwy_A Light-independent proto 88.3 0.38 1.3E-05 54.6 5.1 36 106-141 46-83 (314)
40 2obn_A Hypothetical protein; s 86.4 0.86 2.9E-05 52.5 6.7 37 108-144 152-191 (349)
41 1hyq_A MIND, cell division inh 85.8 0.81 2.8E-05 49.4 5.8 33 721-753 3-38 (263)
42 2obn_A Hypothetical protein; s 84.2 0.98 3.4E-05 52.0 5.7 37 719-755 151-190 (349)
43 1byi_A Dethiobiotin synthase; 83.9 0.82 2.8E-05 48.0 4.6 32 109-140 2-36 (224)
44 1byi_A Dethiobiotin synthase; 82.9 0.73 2.5E-05 48.4 3.7 32 721-752 2-36 (224)
45 3dm5_A SRP54, signal recogniti 80.2 16 0.00056 43.3 14.3 36 108-143 100-137 (443)
46 2g0t_A Conserved hypothetical 79.5 3 0.0001 48.1 7.5 38 719-756 168-208 (350)
47 4a0g_A Adenosylmethionine-8-am 79.4 13 0.00043 47.6 14.0 35 107-141 33-75 (831)
48 4dzz_A Plasmid partitioning pr 79.1 1.8 6.2E-05 44.5 5.1 35 108-142 1-38 (206)
49 3dm5_A SRP54, signal recogniti 78.2 8.1 0.00028 45.9 10.8 36 720-755 100-137 (443)
50 3of5_A Dethiobiotin synthetase 77.9 1.9 6.5E-05 46.4 5.0 35 107-141 3-40 (228)
51 3fgn_A Dethiobiotin synthetase 76.6 2.1 7.2E-05 47.0 4.9 36 106-141 24-62 (251)
52 3of5_A Dethiobiotin synthetase 76.5 1.6 5.6E-05 47.0 3.9 35 719-753 3-40 (228)
53 3ez2_A Plasmid partition prote 75.9 3.9 0.00013 47.3 7.3 54 87-140 85-149 (398)
54 1g3q_A MIND ATPase, cell divis 75.9 2.4 8.2E-05 44.8 5.0 33 109-141 3-38 (237)
55 3bfv_A CAPA1, CAPB2, membrane 75.9 4.5 0.00015 44.6 7.4 34 107-140 81-117 (271)
56 3fgn_A Dethiobiotin synthetase 75.2 1.8 6.3E-05 47.4 4.0 35 719-753 25-62 (251)
57 1xjc_A MOBB protein homolog; s 74.5 3.4 0.00012 42.7 5.6 37 107-143 3-41 (169)
58 1g3q_A MIND ATPase, cell divis 74.5 2.1 7.1E-05 45.2 4.1 33 721-753 3-38 (237)
59 1xjc_A MOBB protein homolog; s 73.9 2.5 8.6E-05 43.7 4.4 37 719-755 3-41 (169)
60 3kl4_A SRP54, signal recogniti 73.6 21 0.00073 42.1 12.8 36 720-755 97-134 (433)
61 3cio_A ETK, tyrosine-protein k 73.4 5 0.00017 44.8 7.0 35 107-141 103-140 (299)
62 1wcv_1 SOJ, segregation protei 72.9 3 0.0001 45.0 5.0 35 107-141 5-42 (257)
63 3bfv_A CAPA1, CAPB2, membrane 72.1 4.5 0.00015 44.6 6.2 34 719-752 81-117 (271)
64 4a0g_A Adenosylmethionine-8-am 70.6 12 0.0004 47.9 10.3 35 719-753 33-75 (831)
65 1wcv_1 SOJ, segregation protei 70.2 2.7 9.1E-05 45.4 3.8 34 719-752 5-41 (257)
66 3la6_A Tyrosine-protein kinase 70.0 6.3 0.00022 43.8 6.8 35 107-141 91-128 (286)
67 1hyq_A MIND, cell division inh 69.8 3.5 0.00012 44.3 4.6 33 109-141 3-38 (263)
68 3cio_A ETK, tyrosine-protein k 69.4 5 0.00017 44.9 5.8 34 719-752 103-139 (299)
69 3q9l_A Septum site-determining 69.3 4.1 0.00014 43.5 5.0 33 109-141 3-38 (260)
70 2ph1_A Nucleotide-binding prot 68.9 4.4 0.00015 43.9 5.2 32 109-140 19-53 (262)
71 3qxc_A Dethiobiotin synthetase 68.4 3.3 0.00011 45.2 4.0 34 720-753 21-57 (242)
72 2xj4_A MIPZ; replication, cell 67.7 4.6 0.00016 44.5 5.0 32 109-140 5-39 (286)
73 3q9l_A Septum site-determining 67.7 3.6 0.00012 44.0 4.1 32 721-752 3-37 (260)
74 3qxc_A Dethiobiotin synthetase 67.4 4.8 0.00017 43.9 5.0 34 108-141 21-57 (242)
75 2xj4_A MIPZ; replication, cell 66.8 3.9 0.00013 45.0 4.3 32 721-752 5-39 (286)
76 2ph1_A Nucleotide-binding prot 66.3 3.8 0.00013 44.4 4.0 33 720-752 18-53 (262)
77 3ez2_A Plasmid partition prote 66.0 7.7 0.00026 44.8 6.7 54 699-752 85-149 (398)
78 3la6_A Tyrosine-protein kinase 65.2 6.2 0.00021 43.9 5.5 33 720-752 92-127 (286)
79 3ea0_A ATPase, para family; al 65.0 4.5 0.00015 42.8 4.1 35 107-141 3-41 (245)
80 3ez9_A Para; DNA binding, wing 63.1 4.7 0.00016 46.7 4.1 55 86-140 87-152 (403)
81 3ea0_A ATPase, para family; al 63.0 3.8 0.00013 43.4 3.1 35 719-753 3-41 (245)
82 3cwq_A Para family chromosome 62.8 5.7 0.00019 41.7 4.4 30 110-140 2-34 (209)
83 3k9g_A PF-32 protein; ssgcid, 62.6 5.9 0.0002 42.8 4.6 33 107-140 26-61 (267)
84 3k9g_A PF-32 protein; ssgcid, 62.5 4.6 0.00016 43.6 3.7 33 719-752 26-61 (267)
85 3cwq_A Para family chromosome 59.3 4.9 0.00017 42.2 3.1 30 722-752 2-34 (209)
86 3ug7_A Arsenical pump-driving 58.1 20 0.00067 40.9 8.1 35 720-754 25-62 (349)
87 2oze_A ORF delta'; para, walke 57.8 16 0.00054 40.0 7.1 27 114-140 45-71 (298)
88 3fkq_A NTRC-like two-domain pr 56.9 8.3 0.00028 44.3 4.8 36 106-141 141-179 (373)
89 1zu4_A FTSY; GTPase, signal re 56.6 15 0.00051 41.6 6.7 36 107-142 104-141 (320)
90 2px0_A Flagellar biosynthesis 56.6 7.5 0.00026 43.5 4.2 36 107-142 104-142 (296)
91 3ez9_A Para; DNA binding, wing 55.5 11 0.00039 43.5 5.7 55 698-752 87-152 (403)
92 3fkq_A NTRC-like two-domain pr 55.3 7 0.00024 44.9 3.8 36 718-753 141-179 (373)
93 2px0_A Flagellar biosynthesis 55.0 7.2 0.00025 43.6 3.7 34 721-754 106-142 (296)
94 1cp2_A CP2, nitrogenase iron p 54.4 11 0.00037 40.6 4.9 32 109-140 2-35 (269)
95 2afh_E Nitrogenase iron protei 54.3 12 0.0004 41.0 5.2 33 108-140 2-36 (289)
96 2oze_A ORF delta'; para, walke 53.0 16 0.00056 39.9 6.1 27 726-752 45-71 (298)
97 3pg5_A Uncharacterized protein 52.4 9.4 0.00032 43.7 4.2 33 108-140 1-36 (361)
98 3end_A Light-independent proto 51.9 13 0.00046 40.9 5.2 34 107-140 40-75 (307)
99 3pg5_A Uncharacterized protein 50.8 8.7 0.0003 44.0 3.6 33 720-752 1-36 (361)
100 2f1r_A Molybdopterin-guanine d 50.5 8.6 0.00029 39.5 3.1 32 721-752 3-36 (171)
101 3kl4_A SRP54, signal recogniti 49.6 25 0.00085 41.6 7.3 36 108-143 97-134 (433)
102 2g0t_A Conserved hypothetical 49.5 15 0.00051 42.3 5.2 37 108-144 169-208 (350)
103 1zu4_A FTSY; GTPase, signal re 49.5 18 0.00061 40.9 5.8 37 718-754 103-141 (320)
104 1np6_A Molybdopterin-guanine d 47.8 20 0.00067 36.9 5.4 36 107-142 5-42 (174)
105 1vma_A Cell division protein F 47.3 17 0.0006 40.8 5.3 36 107-142 103-140 (306)
106 1rz3_A Hypothetical protein rb 46.3 33 0.0011 35.4 6.9 36 107-142 21-58 (201)
107 1vco_A CTP synthetase; tetrame 44.9 49 0.0017 40.3 8.9 105 721-825 13-153 (550)
108 1vma_A Cell division protein F 43.8 16 0.00056 41.0 4.3 35 719-753 103-139 (306)
109 3zq6_A Putative arsenical pump 43.8 18 0.0006 40.7 4.6 36 107-142 12-50 (324)
110 1nij_A Hypothetical protein YJ 43.4 30 0.001 38.7 6.5 49 719-773 3-52 (318)
111 1np6_A Molybdopterin-guanine d 42.7 18 0.00062 37.2 4.1 36 719-754 5-42 (174)
112 3end_A Light-independent proto 42.7 17 0.00056 40.2 4.1 35 718-752 39-75 (307)
113 2yhs_A FTSY, cell division pro 41.9 1.4E+02 0.0047 36.0 12.1 34 107-140 292-327 (503)
114 3c8u_A Fructokinase; YP_612366 41.4 48 0.0016 34.3 7.2 35 106-140 20-56 (208)
115 2f1r_A Molybdopterin-guanine d 40.7 21 0.00073 36.5 4.3 33 108-140 2-36 (171)
116 3ug7_A Arsenical pump-driving 40.1 28 0.00097 39.6 5.6 35 108-142 25-62 (349)
117 3zq6_A Putative arsenical pump 40.0 16 0.00056 41.0 3.5 35 720-754 13-50 (324)
118 1nij_A Hypothetical protein YJ 39.5 31 0.0011 38.6 5.7 49 106-161 2-52 (318)
119 1rz3_A Hypothetical protein rb 39.4 35 0.0012 35.2 5.7 36 719-754 21-58 (201)
120 3igf_A ALL4481 protein; two-do 38.8 55 0.0019 37.8 7.8 99 726-825 10-133 (374)
121 2i3b_A HCR-ntpase, human cance 36.2 36 0.0012 35.3 5.2 43 110-152 3-47 (189)
122 1s1m_A CTP synthase; CTP synth 35.4 1.2E+02 0.0042 36.8 10.3 34 721-754 4-41 (545)
123 3e70_C DPA, signal recognition 35.2 23 0.00079 40.2 3.8 36 107-142 128-165 (328)
124 3c8u_A Fructokinase; YP_612366 35.2 56 0.0019 33.7 6.6 34 719-752 21-56 (208)
125 2xxa_A Signal recognition part 34.8 55 0.0019 38.5 7.1 35 108-142 100-137 (433)
126 1a7j_A Phosphoribulokinase; tr 34.3 28 0.00095 38.6 4.2 36 720-755 5-42 (290)
127 2vo1_A CTP synthase 1; pyrimid 34.1 38 0.0013 37.6 5.0 39 106-144 21-64 (295)
128 3igf_A ALL4481 protein; two-do 34.1 86 0.0029 36.2 8.4 28 115-142 11-38 (374)
129 1cp2_A CP2, nitrogenase iron p 33.5 20 0.00067 38.5 2.8 32 721-752 2-35 (269)
130 3e70_C DPA, signal recognition 33.5 21 0.00073 40.4 3.2 36 719-754 128-165 (328)
131 1gtv_A TMK, thymidylate kinase 32.8 15 0.00052 37.7 1.6 33 111-144 6-38 (214)
132 2woo_A ATPase GET3; tail-ancho 32.1 35 0.0012 38.5 4.6 33 109-141 19-54 (329)
133 2afh_E Nitrogenase iron protei 32.0 23 0.0008 38.6 3.1 32 721-752 3-36 (289)
134 2c5m_A CTP synthase; cytidine 31.9 33 0.0011 37.9 4.1 34 106-139 21-58 (294)
135 1ihu_A Arsenical pump-driving 31.7 1.6E+02 0.0053 35.7 10.7 31 110-140 328-361 (589)
136 1ihu_A Arsenical pump-driving 30.4 1.8E+02 0.006 35.2 10.8 34 109-142 9-44 (589)
137 2v3c_C SRP54, signal recogniti 30.3 22 0.00076 41.9 2.7 34 721-754 100-135 (432)
138 3b9q_A Chloroplast SRP recepto 30.2 54 0.0019 36.6 5.7 36 107-142 99-136 (302)
139 2woo_A ATPase GET3; tail-ancho 29.9 33 0.0011 38.6 4.0 32 722-753 20-54 (329)
140 2vo1_A CTP synthase 1; pyrimid 29.9 36 0.0012 37.8 4.0 35 718-752 21-59 (295)
141 2i3b_A HCR-ntpase, human cance 29.3 40 0.0014 35.0 4.2 43 722-764 3-47 (189)
142 2j37_W Signal recognition part 29.1 71 0.0024 38.5 6.8 36 107-142 100-137 (504)
143 3kjh_A CO dehydrogenase/acetyl 28.8 23 0.00079 37.0 2.3 26 115-140 9-34 (254)
144 2yvu_A Probable adenylyl-sulfa 28.7 47 0.0016 33.5 4.5 35 719-753 12-48 (186)
145 1nks_A Adenylate kinase; therm 28.5 47 0.0016 33.1 4.5 32 109-140 2-35 (194)
146 1rj9_A FTSY, signal recognitio 28.3 34 0.0012 38.3 3.6 35 108-142 102-138 (304)
147 1j8m_F SRP54, signal recogniti 28.1 94 0.0032 34.5 7.2 36 108-143 98-135 (297)
148 2p67_A LAO/AO transport system 27.7 68 0.0023 36.2 6.1 47 92-141 43-91 (341)
149 2z0h_A DTMP kinase, thymidylat 26.9 45 0.0015 33.5 4.0 30 722-751 2-33 (197)
150 3p32_A Probable GTPase RV1496/ 26.8 86 0.003 35.5 6.8 48 91-141 65-114 (355)
151 2c5m_A CTP synthase; cytidine 26.7 32 0.0011 37.9 2.9 34 718-751 21-58 (294)
152 2yvu_A Probable adenylyl-sulfa 26.6 77 0.0026 31.8 5.7 35 107-141 12-48 (186)
153 1rj9_A FTSY, signal recognitio 26.4 33 0.0011 38.5 3.1 35 720-754 102-138 (304)
154 1nks_A Adenylate kinase; therm 26.3 40 0.0014 33.6 3.4 32 721-752 2-35 (194)
155 2og2_A Putative signal recogni 26.3 68 0.0023 36.8 5.7 36 107-142 156-193 (359)
156 2z0h_A DTMP kinase, thymidylat 26.2 67 0.0023 32.2 5.2 30 110-139 2-33 (197)
157 3kjh_A CO dehydrogenase/acetyl 26.0 20 0.00069 37.5 1.2 27 726-752 8-34 (254)
158 1a7j_A Phosphoribulokinase; tr 26.0 47 0.0016 36.8 4.2 35 108-142 5-41 (290)
159 2ffh_A Protein (FFH); SRP54, s 25.9 38 0.0013 39.9 3.6 35 108-142 98-134 (425)
160 1g5t_A COB(I)alamin adenosyltr 25.8 42 0.0014 35.4 3.6 32 721-752 29-62 (196)
161 3b9q_A Chloroplast SRP recepto 25.5 55 0.0019 36.5 4.7 35 719-753 99-135 (302)
162 4ehx_A Tetraacyldisaccharide 4 25.5 1E+02 0.0035 34.7 6.9 51 90-142 18-72 (315)
163 1j8m_F SRP54, signal recogniti 24.0 64 0.0022 35.9 4.8 36 720-755 98-135 (297)
164 2ffh_A Protein (FFH); SRP54, s 23.7 36 0.0012 40.1 2.9 35 720-754 98-134 (425)
165 2b8t_A Thymidine kinase; deoxy 23.7 1.1E+02 0.0038 32.6 6.5 77 721-822 13-95 (223)
166 2xxa_A Signal recognition part 23.6 82 0.0028 37.0 5.9 35 720-754 100-137 (433)
167 2p67_A LAO/AO transport system 23.5 69 0.0024 36.1 5.1 36 718-753 54-91 (341)
168 2pez_A Bifunctional 3'-phospho 22.7 83 0.0028 31.3 5.0 30 109-138 6-37 (179)
169 3hjn_A DTMP kinase, thymidylat 22.6 34 0.0012 35.6 2.1 28 117-144 11-38 (197)
170 1nn5_A Similar to deoxythymidy 22.5 62 0.0021 33.0 4.1 32 721-752 10-43 (215)
171 2v3c_C SRP54, signal recogniti 22.1 79 0.0027 37.2 5.3 35 109-143 100-136 (432)
172 3upu_A ATP-dependent DNA helic 22.1 60 0.0021 38.1 4.4 36 108-144 48-83 (459)
173 4ehx_A Tetraacyldisaccharide 4 22.0 84 0.0029 35.4 5.3 50 702-753 18-71 (315)
174 3p32_A Probable GTPase RV1496/ 22.0 91 0.0031 35.3 5.7 35 719-753 78-114 (355)
175 2pbr_A DTMP kinase, thymidylat 21.8 72 0.0024 31.8 4.3 29 110-138 2-32 (195)
176 2og2_A Putative signal recogni 21.7 70 0.0024 36.7 4.7 35 719-753 156-192 (359)
177 3iqw_A Tail-anchored protein t 21.4 61 0.0021 36.8 4.0 28 115-142 25-52 (334)
178 1nn5_A Similar to deoxythymidy 21.2 1E+02 0.0034 31.3 5.4 33 109-141 10-44 (215)
179 3pzx_A Formate--tetrahydrofola 21.1 1.1E+02 0.0039 36.8 6.2 44 93-140 46-95 (557)
180 3hjn_A DTMP kinase, thymidylat 21.0 33 0.0011 35.7 1.7 29 728-756 10-38 (197)
181 2j37_W Signal recognition part 21.0 92 0.0032 37.5 5.7 36 719-754 100-137 (504)
182 1xx6_A Thymidine kinase; NESG, 20.8 89 0.003 32.5 4.9 35 719-753 7-43 (191)
183 1g5t_A COB(I)alamin adenosyltr 20.6 63 0.0022 34.1 3.7 33 109-141 29-63 (196)
184 2if2_A Dephospho-COA kinase; a 20.5 48 0.0016 33.8 2.7 20 109-128 2-23 (204)
185 2pbr_A DTMP kinase, thymidylat 20.0 58 0.002 32.5 3.2 29 722-750 2-32 (195)
186 3do6_A Formate--tetrahydrofola 20.0 90 0.0031 37.4 5.0 94 193-291 274-394 (543)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.7e-66 Score=617.90 Aligned_cols=395 Identities=26% Similarity=0.378 Sum_probs=313.5
Q ss_pred CCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHH
Q psy15432 50 IPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESI 129 (1255)
Q Consensus 50 ~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sI 129 (1255)
...+|+|+++||.++... +. +++|++|+++|++||+|+ .++++|||||||||||||+|+++|
T Consensus 12 ~~~~~~~~l~~l~~~~~~----------~~-----~~gL~r~~~ll~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~i 73 (437)
T 3nrs_A 12 ATSPLAAWLCYLEHLHSQ----------PI-----ELGLERVKQVAERLDLLK---PAPKIFTVAGTNGKGTTCCTLEAI 73 (437)
T ss_dssp TTSCHHHHHHHHHTC----------------------CCHHHHHHHHHTTCSC---SSSEEEEEECSSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcCCC----------CC-----CCCHHHHHHHHHHcCCcc---ccCCEEEEECCcChHHHHHHHHHH
Confidence 346899999999987542 21 379999999999999997 678999999999999999999999
Q ss_pred HHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEE
Q psy15432 130 LRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVI 209 (1255)
Q Consensus 130 L~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aV 209 (1255)
|+++|||||+||||||.++||||+|||++|+++.|++++.+|.+... ...||+||++|++||.+|.++++|++|
T Consensus 74 L~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~------~~~~T~fe~~t~~a~~~f~~~~~d~~V 147 (437)
T 3nrs_A 74 LLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG------DISLTYFEFGTLSALQLFKQAKLDVVI 147 (437)
T ss_dssp HHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHHHTCCSEEE
T ss_pred HHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999999999999999988876542 357999999999999999999999999
Q ss_pred EeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceE
Q psy15432 210 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVL 289 (1255)
Q Consensus 210 lEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l 289 (1255)
||||+|||+|+||++ +|+++|||||+.||+++||+|+|+||++|++|||++.++|++. +++ ..++.+.+.+.++++
T Consensus 148 lEvGlggrld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~-d~~--~~~~~~~a~~~~~~~ 223 (437)
T 3nrs_A 148 LEVGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGE-PDM--PQSIADVAAELGAQL 223 (437)
T ss_dssp EECSSSSTTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECC-SSC--CHHHHHHHHHHTCEE
T ss_pred EEcCCCCcccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECC-ccH--HHHHHHHHHHcCCcE
Confidence 999999999999998 6999999999999999999999999999999999999999876 333 356777777777777
Q ss_pred EEcCCccee-------------------eecC---cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhh
Q psy15432 290 LEAPSILNY-------------------RWRG---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLA 347 (1255)
Q Consensus 290 ~~~~~~~~~-------------------~~~~---~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~ 347 (1255)
+.++...++ .+.+ ..+.++++| ||..|++.|++++..+
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~------------------- 283 (437)
T 3nrs_A 224 YRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS------------------- 283 (437)
T ss_dssp EEBTTTEEEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH-------------------
T ss_pred EEecccceeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh-------------------
Confidence 766542211 1111 123456663 3444444444443332
Q ss_pred hhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecC
Q psy15432 348 EMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNN 427 (1255)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~ 427 (1255)
.+ +++ .++|++||++++||||||++..+
T Consensus 284 ----------------------------------------------~l----gi~-~~~i~~gL~~~~~pGR~e~v~~~- 311 (437)
T 3nrs_A 284 ----------------------------------------------EL----PLS-DEAIRQGLQAASLPGRFQVVSEQ- 311 (437)
T ss_dssp ----------------------------------------------TC----CCC-HHHHHHHHHHCCCTTSSEEEETT-
T ss_pred ----------------------------------------------CC----CCC-HHHHHHHHHhCCCCCceEEEecC-
Confidence 01 667 89999999999999999999865
Q ss_pred cEEEEccCCCHHHHHHHHHHHH------hhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhc
Q psy15432 428 FKYFLDGAHTTDSIELCAKWFL------RKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ 501 (1255)
Q Consensus 428 ~~vilDgAHnp~si~~~l~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~ 501 (1255)
..+|+||||||+|+++++++++ +.... +++++|||+++|||+.+|++.+ +
T Consensus 312 ~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~~-----------------------~r~i~V~G~~~dkd~~~~~~~l-~ 367 (437)
T 3nrs_A 312 PLLILDVAHNPHAARYLVNRLAQVINPVNASKQ-----------------------GKVRAVVGMLSDKDIAGTLACL-S 367 (437)
T ss_dssp TEEEECCCCSHHHHHHHHHHHHHTC-------------------------------CCEEEEECCBTTBCHHHHHHHH-T
T ss_pred CeEEEECCCCHHHHHHHHHHHHhhcchhhhcCC-----------------------CCEEEEEeCCCCCCHHHHHHHH-H
Confidence 4799999999999999999998 44221 2789999999999999999999 4
Q ss_pred cCCCcEEEEcC-CCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCC
Q psy15432 502 SNQFEYILVTP-NILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLS 580 (1255)
Q Consensus 502 ~~~~d~vi~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1255)
..+|.+++++ ++++.+++
T Consensus 368 -~~~~~v~~~~~~~~r~~~~------------------------------------------------------------ 386 (437)
T 3nrs_A 368 -ERVDEWYCAPLEGPRGASA------------------------------------------------------------ 386 (437)
T ss_dssp -TTCCEEEECCCSSTTBCCH------------------------------------------------------------
T ss_pred -hcCCEEEEeCCCCCCCCCH------------------------------------------------------------
Confidence 3577777765 34443221
Q ss_pred cccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceee
Q psy15432 581 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650 (1255)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l 650 (1255)
..|++ .+... ..++|+++|++.+.... .+++.|||+||+|++|.++..+
T Consensus 387 --------------~~l~~---~~~~~---~~~~d~~~Ai~~a~~~a-~~~D~VLv~GS~~~v~~~~~~~ 435 (437)
T 3nrs_A 387 --------------GQLAE---HLVSA---RQFSDVETAWRQAMQDA-DTQDVVIVCGSFHTVAHVMAAL 435 (437)
T ss_dssp --------------HHHHT---TCSSC---EECSSHHHHHHHHHHHC-CTTCEEEEESSHHHHHHHHHHT
T ss_pred --------------HHHHH---HHhhC---CCcCCHHHHHHHHHHhc-CCCCeEEEEehHHHHHHHHHHh
Confidence 01111 11111 46889999999999876 4678899999999999987544
No 2
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=2.6e-65 Score=615.38 Aligned_cols=416 Identities=24% Similarity=0.330 Sum_probs=334.1
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
.+|+++++||.++... .+. .++|++|+.+++.||+|+ .++++|||||||||||||+||++||+
T Consensus 25 ~~~~~~~~~l~~~~~~---------~~~-----~~~L~r~~~ll~~lg~p~---~~~~vI~VtGTNGKtST~~~l~~iL~ 87 (487)
T 2vos_A 25 ASLLQVEHLLDQRWPE---------TRI-----DPSLTRISALMDLLGSPQ---RSYPSIHIAGTNGKTSVARMVDALVT 87 (487)
T ss_dssp HHHHHHHHHHTTTC------------CC-----CTTCHHHHHHHHHTTCGG---GSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc---------cCC-----CCCHHHHHHHHHHcCCch---hcCeEEEEeCCCCcHHHHHHHHHHHH
Confidence 4699999999875321 111 269999999999999998 56789999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhh-------ccCCcchHHHHHHHHhhhhhhccC
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK-------HAEDMPAYFKFLTVMSFYVFVKEK 204 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~-------~~~~~p~~Fe~Lt~~A~~~F~~~~ 204 (1255)
++|++||+|||||+.++||||+|||++|+++.|..++.++.+..+.... ..+..+++|+++|+|||.+|.+++
T Consensus 88 ~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~ 167 (487)
T 2vos_A 88 ALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAP 167 (487)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999887765421 124568999999999999999999
Q ss_pred CCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc------CCCceeeeccCCCchHHHHH
Q psy15432 205 PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM------KPNCIAVTSANQRGPCKQIL 278 (1255)
Q Consensus 205 vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~------k~g~~~v~~~~q~~e~~~vl 278 (1255)
+|++|||||+||++|+||++ +|+++|||||++||+++||+|+++|+++|++|| |++.++|++. +++++.+++
T Consensus 168 ~d~~VlEvg~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~-dd~~~~~~~ 245 (487)
T 2vos_A 168 VDVAVVEVGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGR-QVPKVMEVL 245 (487)
T ss_dssp CSEEEEECSSSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECC-CCHHHHHHH
T ss_pred CCEEEEEcCCCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeC-CCHHHHHHH
Confidence 99999999999999999998 699999999999999999999999999999999 8899999988 778888888
Q ss_pred HHhhhccCceEEEcCCcc------------eeeecC-----cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhH
Q psy15432 279 LETSRALNCVLLEAPSIL------------NYRWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 341 (1255)
Q Consensus 279 ~~~a~~~~~~l~~~~~~~------------~~~~~~-----~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~ 341 (1255)
.+.+.+.+++++.++... .+.+.. ..+.++++|.||++|+++|++++..++..
T Consensus 246 ~~~a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~---------- 315 (487)
T 2vos_A 246 LAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGA---------- 315 (487)
T ss_dssp HHHHHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhc----------
Confidence 888776666665554211 121211 14678999999999999999998775100
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceE
Q psy15432 342 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQ 421 (1255)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e 421 (1255)
. ...+++ .+.|++||++++||||||
T Consensus 316 ----------------------------------------------------~--~~~gi~-~~~i~~gL~~~~~pGR~e 340 (487)
T 2vos_A 316 ----------------------------------------------------G--AQRQLD-GDAVRAGFAAVTSPGRLE 340 (487)
T ss_dssp ----------------------------------------------------------CCC-HHHHHHHHHTCCCTTSSE
T ss_pred ----------------------------------------------------c--ccCCCC-HHHHHHHHHhCcCCCceE
Confidence 0 001567 899999999999999999
Q ss_pred EEEecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhc
Q psy15432 422 VIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ 501 (1255)
Q Consensus 422 ~v~~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~ 501 (1255)
++..+ ..||+||||||+|+++++++++..... +++++|||+++|||.+.|++.+
T Consensus 341 ~v~~~-~~vi~D~AHNp~a~~a~l~~l~~~~~~-----------------------~~~i~V~G~~~dkd~~~~~~~l-- 394 (487)
T 2vos_A 341 RMRSA-PTVFIDAAHNPAGASALAQTLAHEFDF-----------------------RFLVGVLSVLGDKDVDGILAAL-- 394 (487)
T ss_dssp EEETT-TEEEECCCCSHHHHHHHHHHHHHSCCC-----------------------SEEEEEECCBTTBCHHHHHHHH--
T ss_pred EEcCC-CeEEEECCCCHHHHHHHHHHHHHhcCC-----------------------CCEEEEEEecCCCCHHHHHHHH--
Confidence 99764 589999999999999999999864321 2789999999999999999998
Q ss_pred cCCCcEEEEcCC-CCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCC
Q psy15432 502 SNQFEYILVTPN-ILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLS 580 (1255)
Q Consensus 502 ~~~~d~vi~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1255)
...+|.||+|+. +++.+++
T Consensus 395 ~~~~d~vilt~~~~~r~~~~------------------------------------------------------------ 414 (487)
T 2vos_A 395 EPVFDSVVVTHNGSPRALDV------------------------------------------------------------ 414 (487)
T ss_dssp TTTCSEEEECCCSCTTBCCH------------------------------------------------------------
T ss_pred HhhCCEEEEeCCCCcCCCCH------------------------------------------------------------
Confidence 346799999874 3332221
Q ss_pred cccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCC------------CCceEEEecccccccccce
Q psy15432 581 SVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPS------------KEYHILVTGSLHLVGAFLN 648 (1255)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~------------~~~~vlvtGSlhLVGgvL~ 648 (1255)
..|++.+.+......+.+++|+++|++.+...... +++.||||||+||+|.++.
T Consensus 415 --------------~~l~~~~~~~~~~~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y~vg~~~~ 480 (487)
T 2vos_A 415 --------------EALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAART 480 (487)
T ss_dssp --------------HHHHHHHHHHHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHHHHHHHHH
T ss_pred --------------HHHHHHHHhhcCCCceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEEeeHHHHHHHHH
Confidence 11333332211112477889999999988765411 1278999999999999876
Q ss_pred eec
Q psy15432 649 VLI 651 (1255)
Q Consensus 649 ~l~ 651 (1255)
++.
T Consensus 481 ~l~ 483 (487)
T 2vos_A 481 LFG 483 (487)
T ss_dssp HTT
T ss_pred hhh
Confidence 553
No 3
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=6.9e-64 Score=593.81 Aligned_cols=403 Identities=22% Similarity=0.332 Sum_probs=327.6
Q ss_pred CcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHH
Q psy15432 52 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 131 (1255)
Q Consensus 52 ~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~ 131 (1255)
|+|+|+++||++++.. +. +++|++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 1 ~~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~~l~~lg~p~---~~~~vI~VtGTnGKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL----------AK-----TGDHRRILTLLHALGNPQ---QQGRYIHVTGTNGKGSAANAIAHVLE 62 (428)
T ss_dssp CCHHHHHHHHTTCCCC----------CC-----CSSCHHHHHHHHHTTCGG---GSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc----------CC-----CCCHHHHHHHHHHcCCch---hcCcEEEEECCCChHHHHHHHHHHHH
Confidence 6899999999987542 21 379999999999999998 56799999999999999999999999
Q ss_pred HCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhc-cCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 132 ~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~-~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
++|++||+|+|||+.+++|||+|||.+++++.|.++++++++..++.... +..++++|+++|++||.+|.++++|++||
T Consensus 63 ~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~Vl 142 (428)
T 1jbw_A 63 ASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVI 142 (428)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999998887654311 22468999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|||+|||+|+||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. +++++.+++.+.+.+.+++++
T Consensus 143 Evg~~g~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-dd~~~~~~~~~~a~~~~~~~~ 220 (428)
T 1jbw_A 143 EVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWL 220 (428)
T ss_dssp ECSSSSTTSTTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred ecCCCccccccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeC-CCHHHHHHHHHHHHHcCCcEE
Confidence 99999999999999 6999999999999999999999999999999999999999987 777788888777765555555
Q ss_pred EcCCc------------ceeeecC----c-ccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCC
Q psy15432 291 EAPSI------------LNYRWRG----Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSS 353 (1255)
Q Consensus 291 ~~~~~------------~~~~~~~----~-~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1255)
.++.. ..+.+.. . .+.++++|.||++|+++|++++..+....
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~--------------------- 279 (428)
T 1jbw_A 221 RFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT--------------------- 279 (428)
T ss_dssp EBTTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred EeCccceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhcc---------------------
Confidence 54321 1122211 1 46789999999999999999987752110
Q ss_pred CCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEc
Q psy15432 354 PNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLD 433 (1255)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilD 433 (1255)
...++ ++.|.+||++++||||||++..+ ..+|+|
T Consensus 280 --------------------------------------------~~~i~-~~~i~~~L~~~~~~gR~e~~~~~-~~viiD 313 (428)
T 1jbw_A 280 --------------------------------------------EWPLT-PQNIRQGLAASHWPARLEKISDT-PLIVID 313 (428)
T ss_dssp --------------------------------------------TCCCC-HHHHHHHHHTCCCTTSSEEEETT-TTEEEE
T ss_pred --------------------------------------------CCCCC-HHHHHHHHHhCcCCCceEEecCC-CcEEEE
Confidence 00356 89999999999999999999864 468999
Q ss_pred cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEE-cC
Q psy15432 434 GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILV-TP 512 (1255)
Q Consensus 434 gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~-t~ 512 (1255)
|||||+|++++++++++... + ++++|||++++||+.++++.+ . ..+|.+|+ ++
T Consensus 314 ~AhNp~s~~a~l~~l~~~~~-~-----------------------~~i~V~g~~~~kd~~~~~~~~-~-~~~d~vi~~~~ 367 (428)
T 1jbw_A 314 GAHNPDGINGLITALKQLFS-Q-----------------------PITVIAGILADKDYAAMADRL-T-AAFSTVYLVPV 367 (428)
T ss_dssp CCCSHHHHHHHHHHHHHHCS-S-----------------------CCEEEEECSSSTTHHHHHHHH-H-HHCSEEEECCC
T ss_pred CCcCHHHHHHHHHHHHHhcC-C-----------------------CEEEEEeeCCCCCHHHHHHHH-h-hhCCEEEEECC
Confidence 99999999999999986532 1 689999999999999999988 3 34899998 65
Q ss_pred -CCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCccccccccccc
Q psy15432 513 -NILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQS 591 (1255)
Q Consensus 513 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1255)
++++.+++. +
T Consensus 368 ~~~~r~~~~~--------------------------------------------------------------------~- 378 (428)
T 1jbw_A 368 PGTPRALPEA--------------------------------------------------------------------G- 378 (428)
T ss_dssp SCC-----------------------------------------------------------------------------
T ss_pred CCCCCCCCHH--------------------------------------------------------------------H-
Confidence 444432210 0
Q ss_pred chhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceee
Q psy15432 592 NSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650 (1255)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l 650 (1255)
+++. . ++..++|+++|++.+.... +++.|||+||+++++.++..+
T Consensus 379 -----l~~~-~------~~~~~~~~~~ai~~a~~~~--~~d~vLv~GS~~~~~~~~~~l 423 (428)
T 1jbw_A 379 -----YEAL-H------EGRLKDSWQEALAASLNDV--PDQPIVITGSLYLASAVRQTL 423 (428)
T ss_dssp -------------------CBCSSHHHHHHHHHHHC--TTSCEEEEESHHHHHHHHHHH
T ss_pred -----HHhh-h------CCeecCCHHHHHHHHHhhC--CCCeEEEEeeHHHHHHHHHHH
Confidence 1100 0 1335689999999887765 567899999999999876544
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=1.2e-63 Score=594.30 Aligned_cols=346 Identities=27% Similarity=0.403 Sum_probs=290.3
Q ss_pred CCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHH
Q psy15432 51 PQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESIL 130 (1255)
Q Consensus 51 ~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL 130 (1255)
.|.|+++++||+++... + +.+++|++|+++|++||+|. .++++|||||||||||||+|+++||
T Consensus 12 ~~~~~~~~~~l~~~~~~----------~----~~~~gl~~~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~~iL 74 (442)
T 1o5z_A 12 HMAYLEVLRYLYHKRPM----------G----KVKPGLERISMLLSKLGNPH---LEYKTIHIGGTNGKGSVANMVSNIL 74 (442)
T ss_dssp HHHHHHHHHHHHTC-------------------CCCCSHHHHHHHHHTTCGG---GSSEEEEEECSSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCcC----------C----CCCCCHHHHHHHHHHcCCch---hcCCEEEEECCcCHHHHHHHHHHHH
Confidence 58899999999986431 1 01279999999999999998 4679999999999999999999999
Q ss_pred HHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 131 RSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 131 ~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
+++|++||+|+|||+.++||||+|||.+++++.|..+++++++..+........+|++|+++|++||.+|.++++|++||
T Consensus 75 ~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~Vl 154 (442)
T 1o5z_A 75 VSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVL 154 (442)
T ss_dssp HHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999999999999999999999999988776654344679999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|||+|||+|+||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. +++++.+++.+.|.+.+++++
T Consensus 155 Evg~~g~~d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~-dd~~~~~~~~~~a~~~~~~~~ 232 (442)
T 1o5z_A 155 EVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE-RKREALKVMEDVARKKSSRMY 232 (442)
T ss_dssp ECSSSSTTCGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred EcCCCCCccccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcC-CChHHHHHHHHHHHHcCCcEE
Confidence 99999999999998 6999999999999999999999999999999999999999987 777888888777766555665
Q ss_pred EcCCcc------------eeeecC---c-ccccCCCchhHHhhHHHHHHHHH--HHHHhhccchhhhhHHHHhhhhhccC
Q psy15432 291 EAPSIL------------NYRWRG---Q-PLDEDWKSTVQSINISLAIQLAY--LWMFRMNKSAELKSVIDKFLAEMRVS 352 (1255)
Q Consensus 291 ~~~~~~------------~~~~~~---~-~i~l~l~G~~q~~Na~lAia~a~--~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (1255)
.++... .+.+.. . .+.++++|.||++|+++|++++. .+
T Consensus 233 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l------------------------ 288 (442)
T 1o5z_A 233 VIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL------------------------ 288 (442)
T ss_dssp EBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC------------------------
T ss_pred EeCcceeeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc------------------------
Confidence 554210 111111 1 46789999999999999999886 43
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEE
Q psy15432 353 SPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFL 432 (1255)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vil 432 (1255)
+++ ++.|.+||++++||||||++..++..+|+
T Consensus 289 -----------------------------------------------gi~-~~~i~~~L~~~~~~gR~e~~~~~~~~vii 320 (442)
T 1o5z_A 289 -----------------------------------------------PLS-EKAIREGLKNAKNLGRFEILEKNGKMYIL 320 (442)
T ss_dssp -----------------------------------------------CCC-HHHHHHHHHHCCCTTSSEEEEETTEEEEE
T ss_pred -----------------------------------------------CCC-HHHHHHHHHhCCCCCceEEEEcCCCeEEE
Confidence 567 89999999999999999999876467999
Q ss_pred ccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcC
Q psy15432 433 DGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 433 DgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
||||||+|++++++++++..+. +++++|||++++||+.++++.+ ...+|.+++++
T Consensus 321 D~AhNp~s~~~~l~~l~~~~~~-----------------------~~~i~V~g~~~dkd~~~~~~~l--~~~~d~vi~~~ 375 (442)
T 1o5z_A 321 DGAHNPHGAESLVRSLKLYFNG-----------------------EPLSLVIGILDDKNREDILRKY--TGIFERVIVTR 375 (442)
T ss_dssp CCCCSHHHHHHHHHHHHHHCTT-----------------------CCEEEEECCCTTSCHHHHHGGG--TTTCSEEEECC
T ss_pred ECCcCHHHHHHHHHHHHHhCCC-----------------------CCEEEEEecCCCCCHHHHHHHH--HhhCCEEEEEC
Confidence 9999999999999999875322 2789999999999999999888 34689888776
No 5
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=2.3e-63 Score=591.17 Aligned_cols=383 Identities=24% Similarity=0.327 Sum_probs=304.4
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
.+|+++++||.++... +.. ++|++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 14 ~~~~~~l~~l~~~~~~----------~~~-----~gL~r~~~ll~~lg~p~---~~~~vI~VtGTNGKgSt~~~l~~iL~ 75 (437)
T 3nrs_A 14 SPLAAWLCYLEHLHSQ----------PIE-----LGLERVKQVAERLDLLK---PAPKIFTVAGTNGKGTTCCTLEAILL 75 (437)
T ss_dssp SCHHHHHHHHHTC----------------------CCHHHHHHHHHTTCSC---SSSEEEEEECSSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCC----------CCC-----CCHHHHHHHHHHcCCcc---ccCCEEEEECCcChHHHHHHHHHHHH
Confidence 5799999999987532 322 79999999999999997 67899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEe
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 823 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlE 823 (1255)
++|||||+||||||.++||||+|||++|+++.|...+.++.... ....|||||++|++||.+|.++++|++|||
T Consensus 76 ~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~------~~~~~T~fe~~t~~a~~~f~~~~~d~~VlE 149 (437)
T 3nrs_A 76 AAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGR------GDISLTYFEFGTLSALQLFKQAKLDVVILE 149 (437)
T ss_dssp HTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHH------TTCCCCHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhh------cCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999998876543 245799999999999999999999999999
Q ss_pred cccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEE
Q psy15432 824 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 903 (1255)
Q Consensus 824 VG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~ 903 (1255)
||+|||+|+||++ +|+++|||||++||+++||+|+|+||++|+||||+++++|++. +++ ..++.+.|++.+++++.
T Consensus 150 vGlggrld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~-d~~--~~~~~~~a~~~~~~~~~ 225 (437)
T 3nrs_A 150 VGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGE-PDM--PQSIADVAAELGAQLYR 225 (437)
T ss_dssp CSSSSTTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECC-SSC--CHHHHHHHHHHTCEEEE
T ss_pred cCCCCcccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECC-ccH--HHHHHHHHHHcCCcEEE
Confidence 9999999999999 6999999999999999999999999999999999999999986 332 35777888888888887
Q ss_pred cCCccce-------------------eccC---CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhh
Q psy15432 904 APSILNY-------------------RWRG---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEM 961 (1255)
Q Consensus 904 ~~~~~~~-------------------~~~~---~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~ 961 (1255)
++....+ .+.+ ..+.++++| ||..|++.|++++..+
T Consensus 226 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~--------------------- 283 (437)
T 3nrs_A 226 RDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS--------------------- 283 (437)
T ss_dssp BTTTEEEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH---------------------
T ss_pred ecccceeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh---------------------
Confidence 7642111 1111 124566774 4555555555444331
Q ss_pred hcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCc
Q psy15432 962 RVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNF 1040 (1255)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~ 1040 (1255)
.++++ +.+.+||++++||||||++..+ .
T Consensus 284 --------------------------------------------------~lgi~~~~i~~gL~~~~~pGR~e~v~~~-~ 312 (437)
T 3nrs_A 284 --------------------------------------------------ELPLSDEAIRQGLQAASLPGRFQVVSEQ-P 312 (437)
T ss_dssp --------------------------------------------------TCCCCHHHHHHHHHHCCCTTSSEEEETT-T
T ss_pred --------------------------------------------------CCCCCHHHHHHHHHhCCCCCceEEEecC-C
Confidence 05677 6799999999999999999865 4
Q ss_pred EEEEEcCcCHHHHHHHHHHHH------hhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcC-
Q psy15432 1041 KYFLDGAHTTDSIELCAKWFL------RKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP- 1113 (1255)
Q Consensus 1041 ~vilDgAHNP~S~~a~l~~l~------~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~- 1113 (1255)
.+|+||||||+|+++++++++ ... +.+++++|||+++|||...+++.+ .+ .+|.+++++
T Consensus 313 ~vi~D~AHNp~a~~all~~l~~~~~~~~~~------------~~~r~i~V~G~~~dkd~~~~~~~l-~~-~~~~v~~~~~ 378 (437)
T 3nrs_A 313 LLILDVAHNPHAARYLVNRLAQVINPVNAS------------KQGKVRAVVGMLSDKDIAGTLACL-SE-RVDEWYCAPL 378 (437)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHTC--------------------CCEEEEECCBTTBCHHHHHHHH-TT-TCCEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHhhcchhhhc------------CCCCEEEEEeCCCCCCHHHHHHHH-Hh-cCCEEEEeCC
Confidence 799999999999999999998 542 125789999999999999999999 44 567777765
Q ss_pred CCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCCC
Q psy15432 1114 NILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSS 1166 (1255)
Q Consensus 1114 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1166 (1255)
++++...... +...+... ....+.++.++.+.....+++++|++||..
T Consensus 379 ~~~r~~~~~~---l~~~~~~~--~~~~d~~~Ai~~a~~~a~~~D~VLv~GS~~ 426 (437)
T 3nrs_A 379 EGPRGASAGQ---LAEHLVSA--RQFSDVETAWRQAMQDADTQDVVIVCGSFH 426 (437)
T ss_dssp SSTTBCCHHH---HHTTCSSC--EECSSHHHHHHHHHHHCCTTCEEEEESSHH
T ss_pred CCCCCCCHHH---HHHHHhhC--CCcCCHHHHHHHHHHhcCCCCeEEEEehHH
Confidence 3443322110 00011111 345688999999988888999999999854
No 6
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=7.6e-62 Score=576.31 Aligned_cols=394 Identities=21% Similarity=0.322 Sum_probs=320.9
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
|+|+++++||++++.+ +. .++|++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 1 ~~~~~~~~~l~~~~~~----------~~-----~~~l~~~~~~l~~lg~p~---~~~~vI~VtGTnGKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL----------AK-----TGDHRRILTLLHALGNPQ---QQGRYIHVTGTNGKGSAANAIAHVLE 62 (428)
T ss_dssp CCHHHHHHHHTTCCCC----------CC-----CSSCHHHHHHHHHTTCGG---GSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc----------CC-----CCCHHHHHHHHHHcCCch---hcCcEEEEECCCChHHHHHHHHHHHH
Confidence 5799999999987532 32 279999999999999998 56799999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhc-CCCCCcHHHHHHHHHHHhhhcCCCCEEEE
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH-AEDMPAYFKFLTVMSFYVFVKEKPDAVIM 822 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~-~~~~pt~Fe~lT~mAf~~F~~~~vD~aVl 822 (1255)
++|++||+|+|||+.++||||+|||.+++++.|..++.++++...+.... +..+|++||++|++||.+|.++++|++|+
T Consensus 63 ~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~Vl 142 (428)
T 1jbw_A 63 ASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVI 142 (428)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999999999998887665311 23569999999999999999999999999
Q ss_pred ecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEE
Q psy15432 823 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 902 (1255)
Q Consensus 823 EVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~ 902 (1255)
|||+||++|.||++ +|+++|||||++||+++||+|+|+||++|++||++++++|++. +++.+.+++.+.+.+.+++++
T Consensus 143 Evg~~g~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-dd~~~~~~~~~~a~~~~~~~~ 220 (428)
T 1jbw_A 143 EVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGN-LVPDAAAVVAAKVATTGSQWL 220 (428)
T ss_dssp ECSSSSTTSTTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred ecCCCccccccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeC-CCHHHHHHHHHHHHHcCCcEE
Confidence 99999999999999 6999999999999999999999999999999999999999998 667778888877776667776
Q ss_pred EcCCcc------------ceecc--C--C-ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCC
Q psy15432 903 EAPSIL------------NYRWR--G--Q-PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSS 965 (1255)
Q Consensus 903 ~~~~~~------------~~~~~--~--~-~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1255)
.++... .+.+. + . .+.++++|.||++|+++|++++..+....
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~--------------------- 279 (428)
T 1jbw_A 221 RFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT--------------------- 279 (428)
T ss_dssp EBTTTEEEEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred EeCccceeeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhcc---------------------
Confidence 665310 11111 1 1 46789999999999999999988741110
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEE
Q psy15432 966 PNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFL 1044 (1255)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vil 1044 (1255)
.+.++ +.+.+||++++||||||++..++ .+|+
T Consensus 280 ----------------------------------------------~~~i~~~~i~~~L~~~~~~gR~e~~~~~~-~vii 312 (428)
T 1jbw_A 280 ----------------------------------------------EWPLTPQNIRQGLAASHWPARLEKISDTP-LIVI 312 (428)
T ss_dssp ----------------------------------------------TCCCCHHHHHHHHHTCCCTTSSEEEETTT-TEEE
T ss_pred ----------------------------------------------CCCCCHHHHHHHHHhCcCCCceEEecCCC-cEEE
Confidence 02356 67999999999999999998654 5899
Q ss_pred EcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEE-cC-CCCcccccc
Q psy15432 1045 DGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILV-TP-NILTNEIRW 1122 (1255)
Q Consensus 1045 DgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~-t~-~~~~~~~~~ 1122 (1255)
||||||+|++++++++++.. + +++++|||++++||...+++.+ .+ .+|.+++ ++ ++++.....
T Consensus 313 D~AhNp~s~~a~l~~l~~~~------------~-~~~i~V~g~~~~kd~~~~~~~~-~~-~~d~vi~~~~~~~~r~~~~~ 377 (428)
T 1jbw_A 313 DGAHNPDGINGLITALKQLF------------S-QPITVIAGILADKDYAAMADRL-TA-AFSTVYLVPVPGTPRALPEA 377 (428)
T ss_dssp ECCCSHHHHHHHHHHHHHHC------------S-SCCEEEEECSSSTTHHHHHHHH-HH-HCSEEEECCCSCC-------
T ss_pred ECCcCHHHHHHHHHHHHHhc------------C-CCEEEEEeeCCCCCHHHHHHHH-hh-hCCEEEEECCCCCCCCCCHH
Confidence 99999999999999998643 1 4679999999999999999988 33 3898888 66 444333211
Q ss_pred cCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1123 RGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1123 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
. +... ....+..+.++.++.+.... +++++|++||..+
T Consensus 378 ~---l~~~---~~~~~~~~~~~ai~~a~~~~-~~d~vLv~GS~~~ 415 (428)
T 1jbw_A 378 G---YEAL---HEGRLKDSWQEALAASLNDV-PDQPIVITGSLYL 415 (428)
T ss_dssp --------------CBCSSHHHHHHHHHHHC-TTSCEEEEESHHH
T ss_pred H---HHhh---hCCeecCCHHHHHHHHHhhC-CCCeEEEEeeHHH
Confidence 0 0000 01234468888888888777 8899999999754
No 7
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=2.7e-61 Score=580.39 Aligned_cols=400 Identities=23% Similarity=0.294 Sum_probs=319.3
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
.+|+++++||.++.. ..+. .++|++|+.+|+++|+|+ .++++|||||||||||||+||++||+
T Consensus 25 ~~~~~~~~~l~~~~~---------~~~~-----~~~L~r~~~ll~~lg~p~---~~~~vI~VtGTNGKtST~~~l~~iL~ 87 (487)
T 2vos_A 25 ASLLQVEHLLDQRWP---------ETRI-----DPSLTRISALMDLLGSPQ---RSYPSIHIAGTNGKTSVARMVDALVT 87 (487)
T ss_dssp HHHHHHHHHHTTTC------------CC-----CTTCHHHHHHHHHTTCGG---GSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc---------ccCC-----CCCHHHHHHHHHHcCCch---hcCeEEEEeCCCCcHHHHHHHHHHHH
Confidence 368999999887531 1222 279999999999999998 56899999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhh-------cCCCCCcHHHHHHHHHHHhhhcCC
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRK-------HAEDMPAYFKFLTVMSFYVFVKEK 816 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~-------~~~~~pt~Fe~lT~mAf~~F~~~~ 816 (1255)
++|++||+|+||||.++||||+|||++|+++.|..++.++.+..+.... ..+..+|+||++|+|||.+|.+++
T Consensus 88 ~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~ 167 (487)
T 2vos_A 88 ALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAP 167 (487)
T ss_dssp HTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999887765431 124569999999999999999999
Q ss_pred CCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc------cCCceEEEccCCCChhHHHH
Q psy15432 817 PDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM------KPNCIAVTSANQRGPCKQIL 890 (1255)
Q Consensus 817 vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~------K~g~~av~~~~qd~~~~~vl 890 (1255)
+|++|||||+||++|+||++ +|+++|||||++||+++||+|+|+||++|++|| |+++++|++. +++++.+++
T Consensus 168 ~d~~VlEvg~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~-dd~~~~~~~ 245 (487)
T 2vos_A 168 VDVAVVEVGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGR-QVPKVMEVL 245 (487)
T ss_dssp CSEEEEECSSSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECC-CCHHHHHHH
T ss_pred CCEEEEEcCCCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeC-CCHHHHHHH
Confidence 99999999999999999999 699999999999999999999999999999999 8899999998 677788888
Q ss_pred HHHhhhcCCeEEEcCCcc------------ceecc--C---CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q psy15432 891 LETSRALNCVLLEAPSIL------------NYRWR--G---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSV 953 (1255)
Q Consensus 891 ~~~A~~~~~~l~~~~~~~------------~~~~~--~---~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~ 953 (1255)
.+.+.+.+++++.++... .+.+. + ..+.++++|.||++|+++|++++..+....
T Consensus 246 ~~~a~~~~~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~--------- 316 (487)
T 2vos_A 246 LAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAG--------- 316 (487)
T ss_dssp HHHHHHTTCEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHcCCeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhcc---------
Confidence 888877777777665311 11111 1 146789999999999999999988631000
Q ss_pred HHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcE
Q psy15432 954 IDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRV 1032 (1255)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~ 1032 (1255)
..++++ +.|.+||++++|||||
T Consensus 317 ---------------------------------------------------------~~~gi~~~~i~~gL~~~~~pGR~ 339 (487)
T 2vos_A 317 ---------------------------------------------------------AQRQLDGDAVRAGFAAVTSPGRL 339 (487)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHHHTCCCTTSS
T ss_pred ---------------------------------------------------------ccCCCCHHHHHHHHHhCcCCCce
Confidence 003577 6799999999999999
Q ss_pred EEEeecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEc
Q psy15432 1033 QVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVT 1112 (1255)
Q Consensus 1033 E~v~~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t 1112 (1255)
|++..+ ..+|+||||||+|+++++++++... +.+++++|||+++|||.+.+++.+ . ..+|.+++|
T Consensus 340 e~v~~~-~~vi~D~AHNp~a~~a~l~~l~~~~------------~~~~~i~V~G~~~dkd~~~~~~~l-~-~~~d~vilt 404 (487)
T 2vos_A 340 ERMRSA-PTVFIDAAHNPAGASALAQTLAHEF------------DFRFLVGVLSVLGDKDVDGILAAL-E-PVFDSVVVT 404 (487)
T ss_dssp EEEETT-TEEEECCCCSHHHHHHHHHHHHHSC------------CCSEEEEEECCBTTBCHHHHHHHH-T-TTCSEEEEC
T ss_pred EEEcCC-CeEEEECCCCHHHHHHHHHHHHHhc------------CCCCEEEEEEecCCCCHHHHHHHH-H-hhCCEEEEe
Confidence 999864 5799999999999999999998632 124789999999999999999998 3 357999998
Q ss_pred CC-CCcccccccCCCCCccccc----ccccccCCHHHHHHHHHHHcCCC-------------ceEEeecCCC
Q psy15432 1113 PN-ILTNEIRWRGQPLDEDWKS----TVQSINISLAIQLAYLWMFRMNK-------------SAELKRNQSS 1166 (1255)
Q Consensus 1113 ~~-~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~ 1166 (1255)
+. .++...... +...+.. .......+.++.++.+.....++ +++|++||..
T Consensus 405 ~~~~~r~~~~~~---l~~~~~~~~~~~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y 473 (487)
T 2vos_A 405 HNGSPRALDVEA---LALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVV 473 (487)
T ss_dssp CCSCTTBCCHHH---HHHHHHHHHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHH
T ss_pred CCCCcCCCCHHH---HHHHHHhhcCCCceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEEeeHH
Confidence 74 343221110 0011111 11233457888887776655443 7899999843
No 8
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=1.9e-60 Score=566.78 Aligned_cols=391 Identities=25% Similarity=0.331 Sum_probs=310.4
Q ss_pred CCcccHHHHHHHHHhcchhHHHHHHhhccC-CcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHH
Q psy15432 661 EIPQSYVDAIKQLNTLQSNIRTIRESKLRK-DPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCE 739 (1255)
Q Consensus 661 ~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g-~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~ 739 (1255)
...|.|+++++||+++... + . .++|++|+++|++||+|+ .++++|||||||||||||+|++
T Consensus 10 ~~~~~~~~~~~~l~~~~~~----------~~~-----~~gl~~~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~ 71 (442)
T 1o5z_A 10 HHHMAYLEVLRYLYHKRPM----------GKV-----KPGLERISMLLSKLGNPH---LEYKTIHIGGTNGKGSVANMVS 71 (442)
T ss_dssp CCHHHHHHHHHHHHTC---------------C-----CCCSHHHHHHHHHTTCGG---GSSEEEEEECSSSHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhCcC----------CCC-----CCCHHHHHHHHHHcCCch---hcCCEEEEECCcCHHHHHHHHH
Confidence 4568999999999986432 2 2 279999999999999998 4679999999999999999999
Q ss_pred HHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCE
Q psy15432 740 SILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDA 819 (1255)
Q Consensus 740 sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~ 819 (1255)
+||+++|++||+|+|||+.++||||+|||.|++++.|..++.++++..+........+||+||++|++||.+|.+.++|+
T Consensus 72 ~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~ 151 (442)
T 1o5z_A 72 NILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDI 151 (442)
T ss_dssp HHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999988877654445679999999999999999999999
Q ss_pred EEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCC
Q psy15432 820 VIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNC 899 (1255)
Q Consensus 820 aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~ 899 (1255)
+|+|||+||++|.||++ +|+++|||||++||+++||+|+|+|+++|++||++++++|++. +++.+.+++.+.|.+.++
T Consensus 152 ~VlEvg~~g~~d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~-dd~~~~~~~~~~a~~~~~ 229 (442)
T 1o5z_A 152 AVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE-RKREALKVMEDVARKKSS 229 (442)
T ss_dssp EEEECSSSSTTCGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECC-CCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCCccccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcC-CChHHHHHHHHHHHHcCC
Confidence 99999999999999998 6999999999999999999999999999999999999999998 667777888777776677
Q ss_pred eEEEcCCcc------------ceeccC---C-ccccCCCchhHHHHHHHHHHHHH--HHHHhhcchhhhhhHHHHHhhhh
Q psy15432 900 VLLEAPSIL------------NYRWRG---Q-PLDEDWKSTVQSINISLAIQLAY--LWMFRMNKSAELKSVIDKFLAEM 961 (1255)
Q Consensus 900 ~l~~~~~~~------------~~~~~~---~-~v~l~L~G~hq~~Na~lAiala~--~~l~~~~~~~~~~~~~~~~~~~~ 961 (1255)
+++.++... .+.+.. . .+.++++|.||++|+++|++++. .
T Consensus 230 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~---------------------- 287 (442)
T 1o5z_A 230 RMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATG---------------------- 287 (442)
T ss_dssp CEEEBTTTBEEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHC----------------------
T ss_pred cEEEeCcceeeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhh----------------------
Confidence 777765311 011111 1 46789999999999999999877 4
Q ss_pred hcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCc
Q psy15432 962 RVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNF 1040 (1255)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~ 1040 (1255)
+|++ +.+.+||+++.||||||++...+.
T Consensus 288 ---------------------------------------------------lgi~~~~i~~~L~~~~~~gR~e~~~~~~~ 316 (442)
T 1o5z_A 288 ---------------------------------------------------LPLSEKAIREGLKNAKNLGRFEILEKNGK 316 (442)
T ss_dssp ---------------------------------------------------CCCCHHHHHHHHHHCCCTTSSEEEEETTE
T ss_pred ---------------------------------------------------cCCCHHHHHHHHHhCCCCCceEEEEcCCC
Confidence 4666 679999999999999999987646
Q ss_pred EEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcCC-CCccc
Q psy15432 1041 KYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN-ILTNE 1119 (1255)
Q Consensus 1041 ~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~-~~~~~ 1119 (1255)
.+++||||||+|+++++++++.... .+++++|||+++|||...+++.+ . ..+|.+++++. .++..
T Consensus 317 ~viiD~AhNp~s~~~~l~~l~~~~~------------~~~~i~V~g~~~dkd~~~~~~~l-~-~~~d~vi~~~~~~~r~~ 382 (442)
T 1o5z_A 317 MYILDGAHNPHGAESLVRSLKLYFN------------GEPLSLVIGILDDKNREDILRKY-T-GIFERVIVTRVPSPRMK 382 (442)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHHCT------------TCCEEEEECCCTTSCHHHHHGGG-T-TTCSEEEECCCSSTTCC
T ss_pred eEEEECCcCHHHHHHHHHHHHHhCC------------CCCEEEEEecCCCCCHHHHHHHH-H-hhCCEEEEECCCCCCCC
Confidence 7999999999999999999986431 14689999999999999999888 3 35898877763 33322
Q ss_pred ccccCCCCCccccc--ccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1120 IRWRGQPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1120 ~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.... +...+.. .......+.++.++.+ ++++|++||..+
T Consensus 383 ~~~~---i~~~~~~~~~~~~~~~~~~~Ai~~a------~d~VLv~GS~~~ 423 (442)
T 1o5z_A 383 DMNS---LVDMAKKFFKNVEVIEDPLEAIEST------ERATVVTGSLFL 423 (442)
T ss_dssp CHHH---HHHHHHHHCSCCEECSSHHHHHHTC------CSEEEEESCHHH
T ss_pred CHHH---HHHHHHhcCCCceecCCHHHHHHhC------CCEEEEEeeHHH
Confidence 1100 0000111 0112334666666554 678888888544
No 9
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=1.9e-59 Score=554.69 Aligned_cols=395 Identities=24% Similarity=0.351 Sum_probs=320.1
Q ss_pred CCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchHHHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHH
Q psy15432 51 PQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESIL 130 (1255)
Q Consensus 51 ~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL 130 (1255)
.++|++++++|.++.. .+. .+++++|+++|++||+|. .++++|||||||||||||+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~----------~~~-----~~gl~r~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~~iL 71 (422)
T 1w78_A 10 ASPLASWLSYLENLHS----------KTI-----DLGLERVSLVAARLGVLK---PAPFVFTVAGTNGKGTTCRTLESIL 71 (422)
T ss_dssp TSCHHHHHHHHTTSSS----------SSC-----CCCSHHHHHHHHHHTCSS---CSSEEEEEECSSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhccc----------CCC-----CCCHHHHHHHHHHcCCcc---cCCcEEEEeCCcChHHHHHHHHHHH
Confidence 3579999998887532 121 369999999999999998 5679999999999999999999999
Q ss_pred HHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEE
Q psy15432 131 RSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210 (1255)
Q Consensus 131 ~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVl 210 (1255)
+++|+++|+|+|||+.++||||+|||.+++++.|.++++.+.+... +..+++|+++|++||.+|.++++|++||
T Consensus 72 ~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~------~~~~t~~e~~t~~a~~~~~~~~~d~~Vl 145 (422)
T 1w78_A 72 MAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARG------DISLTYFEYGTLSALWLFKQAQLDVVIL 145 (422)
T ss_dssp HHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTT------TCCCCHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhc------cCCCChHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999888765442 2468999999999999999999999999
Q ss_pred eeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeeccCCCchHHHHHHHhhhccCceEE
Q psy15432 211 EVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLL 290 (1255)
Q Consensus 211 EvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~ 290 (1255)
|||+||++|+||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. + +. ..++.+.+.+.+++++
T Consensus 146 Evgl~~~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~-d-~~-~~~~~~~a~~~~~~~~ 221 (422)
T 1w78_A 146 EVGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGE-P-EM-PSTIADVAQEKGALLQ 221 (422)
T ss_dssp ECSSSSTTSGGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECC-S-SC-CHHHHHHHHHHTCEEE
T ss_pred ecCCCcccccccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcC-c-cH-HHHHHHHHHHcCCceE
Confidence 99999999999998 6999999999999999999999999999999999999988865 3 32 2456565655555666
Q ss_pred EcCCcce-------eeec--Ccc-cccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCC
Q psy15432 291 EAPSILN-------YRWR--GQP-LDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGG 360 (1255)
Q Consensus 291 ~~~~~~~-------~~~~--~~~-i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1255)
.++.... +.+. +.. +.++++ .||++|+++|++++..+
T Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~-------------------------------- 268 (422)
T 1w78_A 222 RRGVEWNYSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS-------------------------------- 268 (422)
T ss_dssp EBTTTBEEEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH--------------------------------
T ss_pred EeCcceeeeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh--------------------------------
Confidence 5543111 1111 112 467888 99999999999988764
Q ss_pred CCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEecCcEEEEccCCCHHH
Q psy15432 361 QGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDS 440 (1255)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~~~~vilDgAHnp~s 440 (1255)
. .+++ ++.|.+||++++||||||++..++ .+|+||||||+|
T Consensus 269 ---------------------------------~----~gi~-~~~i~~~L~~~~~~gR~e~~~~~~-~~i~D~Ahnp~s 309 (422)
T 1w78_A 269 ---------------------------------G----LEVS-ENAIRDGIASAILPGRFQIVSESP-RVIFDVAHNPHA 309 (422)
T ss_dssp ---------------------------------T----CCCC-HHHHHHHHHHCCCTTSSEEEETTT-EEEEECCCSHHH
T ss_pred ---------------------------------C----CCCC-HHHHHHHHHhCCCCceEEEEeCCC-eEEEECCCCHHH
Confidence 0 1567 899999999999999999998654 799999999999
Q ss_pred HHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhhhhHHhhccCCCcEEEEcCCCC-CCCC
Q psy15432 441 IELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNIL-TNES 519 (1255)
Q Consensus 441 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~-~~~~ 519 (1255)
+++++++++..... +++++|||++++||+.++++.+ + ..+|.+++++... +.++
T Consensus 310 ~~~~l~~l~~~~~~-----------------------~~~i~V~g~~~~kd~~~~~~~l-~-~~~d~vi~~~~~~~r~~~ 364 (422)
T 1w78_A 310 AEYLTGRMKALPKN-----------------------GRVLAVIGMLHDKDIAGTLAWL-K-SVVDDWYCAPLEGPRGAT 364 (422)
T ss_dssp HHHHHHHHHHSCSC-----------------------SCEEEEECCBTTSCHHHHHHHH-H-TTCSEEEECCCCSSSBCC
T ss_pred HHHHHHHHHHhCCC-----------------------CCEEEEEeccCCCCHHHHHHHH-H-hhCCEEEEECCCCCCCCC
Confidence 99999999865311 2789999999999999999988 3 3588888875322 2111
Q ss_pred CCCCcCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHH
Q psy15432 520 SPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIAT 599 (1255)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1255)
...+++
T Consensus 365 --------------------------------------------------------------------------~~~l~~ 370 (422)
T 1w78_A 365 --------------------------------------------------------------------------AEQLLE 370 (422)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 011332
Q ss_pred HHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEEecccccccccceeec
Q psy15432 600 VASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLI 651 (1255)
Q Consensus 600 ~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgvL~~l~ 651 (1255)
.+. ++..++|+++|++.+.... .+++.|||+||+|+++.++..+.
T Consensus 371 ~~~------~~~~~~~~~~ai~~a~~~~-~~~d~vLv~GS~~~~~~~~~~l~ 415 (422)
T 1w78_A 371 HLG------NGKSFDSVAQAWDAAMADA-KAEDTVLVCGSFHTVAHVMEVID 415 (422)
T ss_dssp HHS------SCEECSSHHHHHHHHHHHC-CTTCEEEEESSHHHHHHHHHHHH
T ss_pred HHh------hcccCCCHHHHHHHHHHhc-CCCCEEEEEeeHHHHHHHHHHHH
Confidence 222 1457899999999998876 46788999999999998865543
No 10
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=3.5e-57 Score=535.33 Aligned_cols=385 Identities=23% Similarity=0.304 Sum_probs=310.8
Q ss_pred ccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHH
Q psy15432 664 QSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR 743 (1255)
Q Consensus 664 ~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr 743 (1255)
++|++++++|.++.. .+. .+++++|+++|++||+|+ .++++|||||||||||||+|+++||+
T Consensus 11 ~~~~~~~~~~~~~~~----------~~~-----~~gl~r~~~~l~~lg~p~---~~~~vI~VTGTnGKtTT~~~l~~iL~ 72 (422)
T 1w78_A 11 SPLASWLSYLENLHS----------KTI-----DLGLERVSLVAARLGVLK---PAPFVFTVAGTNGKGTTCRTLESILM 72 (422)
T ss_dssp SCHHHHHHHHTTSSS----------SSC-----CCCSHHHHHHHHHHTCSS---CSSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccc----------CCC-----CCCHHHHHHHHHHcCCcc---cCCcEEEEeCCcChHHHHHHHHHHHH
Confidence 468999888877532 122 279999999999999998 56799999999999999999999999
Q ss_pred HCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEe
Q psy15432 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIME 823 (1255)
Q Consensus 744 ~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlE 823 (1255)
++|+++|+|+|||+.++||||+|||.+++++.|.++++.+.+.. +...+++||++|++||.+|.++++|++|+|
T Consensus 73 ~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~------~~~~~t~~e~~t~~a~~~~~~~~~d~~VlE 146 (422)
T 1w78_A 73 AAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESAR------GDISLTYFEYGTLSALWLFKQAQLDVVILE 146 (422)
T ss_dssp HTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHT------TTCCCCHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHh------ccCCCChHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999999999999999999887776542 234689999999999999999999999999
Q ss_pred cccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEccCCCChhHHHHHHHhhhcCCeEEE
Q psy15432 824 VGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLE 903 (1255)
Q Consensus 824 VG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~ 903 (1255)
||+||++|.||++ +|+++|||||+.||+++||+|+|+|+++|++||+++.++|++. ++. ..++.+.+.+.+++++.
T Consensus 147 vgl~~~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~--d~~-~~~~~~~a~~~~~~~~~ 222 (422)
T 1w78_A 147 VGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGE--PEM-PSTIADVAQEKGALLQR 222 (422)
T ss_dssp CSSSSTTSGGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECC--SSC-CHHHHHHHHHHTCEEEE
T ss_pred cCCCcccccccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcC--ccH-HHHHHHHHHHcCCceEE
Confidence 9999999999998 6999999999999999999999999999999999999999876 332 34666666666677777
Q ss_pred cCCccc-------eec--cCCc-cccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCC
Q psy15432 904 APSILN-------YRW--RGQP-LDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQ 973 (1255)
Q Consensus 904 ~~~~~~-------~~~--~~~~-v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1255)
++.... +.+ .+.. +.++++ .||++|+++|++++..+
T Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~--------------------------------- 268 (422)
T 1w78_A 223 RGVEWNYSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS--------------------------------- 268 (422)
T ss_dssp BTTTBEEEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH---------------------------------
T ss_pred eCcceeeeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh---------------------------------
Confidence 653211 111 1112 467888 99999999999988751
Q ss_pred CCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeecCcEEEEEcCcCHHH
Q psy15432 974 GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDS 1052 (1255)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~~~~vilDgAHNP~S 1052 (1255)
+++++ +.+.+||++++||||||++..++ .+|+||||||+|
T Consensus 269 --------------------------------------~~gi~~~~i~~~L~~~~~~gR~e~~~~~~-~~i~D~Ahnp~s 309 (422)
T 1w78_A 269 --------------------------------------GLEVSENAIRDGIASAILPGRFQIVSESP-RVIFDVAHNPHA 309 (422)
T ss_dssp --------------------------------------TCCCCHHHHHHHHHHCCCTTSSEEEETTT-EEEEECCCSHHH
T ss_pred --------------------------------------CCCCCHHHHHHHHHhCCCCceEEEEeCCC-eEEEECCCCHHH
Confidence 04566 67999999999999999998654 799999999999
Q ss_pred HHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccc
Q psy15432 1053 IELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWK 1132 (1255)
Q Consensus 1053 ~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~ 1132 (1255)
+++++++++... +.+++++|||+++|||...+++.+ .+ .+|.+++++.......... .+...+.
T Consensus 310 ~~~~l~~l~~~~------------~~~~~i~V~g~~~~kd~~~~~~~l-~~-~~d~vi~~~~~~~r~~~~~--~l~~~~~ 373 (422)
T 1w78_A 310 AEYLTGRMKALP------------KNGRVLAVIGMLHDKDIAGTLAWL-KS-VVDDWYCAPLEGPRGATAE--QLLEHLG 373 (422)
T ss_dssp HHHHHHHHHHSC------------SCSCEEEEECCBTTSCHHHHHHHH-HT-TCSEEEECCCCSSSBCCHH--HHHHHHS
T ss_pred HHHHHHHHHHhC------------CCCCEEEEEeccCCCCHHHHHHHH-Hh-hCCEEEEECCCCCCCCCHH--HHHHHHh
Confidence 999999998642 125789999999999999999888 33 4788888764332211110 0000011
Q ss_pred cccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1133 STVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1133 ~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
...+..+.++.++.+.....+++++|++||..+
T Consensus 374 --~~~~~~~~~~ai~~a~~~~~~~d~vLv~GS~~~ 406 (422)
T 1w78_A 374 --NGKSFDSVAQAWDAAMADAKAEDTVLVCGSFHT 406 (422)
T ss_dssp --SCEECSSHHHHHHHHHHHCCTTCEEEEESSHHH
T ss_pred --hcccCCCHHHHHHHHHHhcCCCCEEEEEeeHHH
Confidence 122446889999999888888999999998554
No 11
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=7.8e-50 Score=482.17 Aligned_cols=364 Identities=16% Similarity=0.119 Sum_probs=272.8
Q ss_pred eeccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcH-HHHHHHHHhcchhHHHHHhh-hcCCCccccccc
Q psy15432 9 LKELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRES-KLRKDPVEMQAV 86 (1255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~eai~~L~~l~~~~~~~~~~-~~~~~~~~~~~~ 86 (1255)
+.+++.+..+||++.|+.+||+++|.+.+++.|+.+...+....-. ++.+. . .+ .+. ...+.+ .+
T Consensus 18 ~~~i~~v~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~avv~~~~~~---~--~~----~e~~~~~~~~----~i 84 (498)
T 1e8c_A 18 SRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE---A--TD----GEIREMHGVP----VI 84 (498)
T ss_dssp CCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTT---C--CT----TCEEEETTEE----EE
T ss_pred CceeeeEEeeCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEcCccc---c--cc----ccccccCCcc----EE
Confidence 3478889999999999999999999999999987665554322111 00000 0 00 000 000112 26
Q ss_pred chHHHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKF 164 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~f 164 (1255)
.|++++++|+.|+..+++.| ++++||||||||||||++|+++||+++|+++|+++|++ ..+|+..++.
T Consensus 85 ~V~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~-------~~i~~~~~~~--- 154 (498)
T 1e8c_A 85 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPT--- 154 (498)
T ss_dssp EETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCC---
T ss_pred EECCHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------cccCCeeeec---
Confidence 78999999999987766644 67899999999999999999999999999999999998 6788776651
Q ss_pred hhHHHHHHHHHHhhhhccCCcchHHHHHHHHh-hhhhhccCCCEEEEeecc----CCccccccccCCccEEEEcCCCcch
Q psy15432 165 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMS-FYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDH 239 (1255)
Q Consensus 165 t~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A-~~~F~~~~vD~aVlEvG~----GGr~D~tnii~~P~v~vITnIg~DH 239 (1255)
.+++|+.+++++ |.+|.++++|++|||||+ +||+|++| |+++|||||+.||
T Consensus 155 --------------------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DH 210 (498)
T 1e8c_A 155 --------------------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK----FAASVFTNLSRDH 210 (498)
T ss_dssp --------------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----CSEEEECCCCSCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----CCEEEEeCCChhh
Confidence 234555566554 677889999999999997 57999865 6999999999999
Q ss_pred hhhcCCCHHHHHHHHHcccCC--CceeeeccCCCchHHHHHHHhhhccCceEEEcCC-------------------ccee
Q psy15432 240 TAVLGNTIEEITMQKAGIMKP--NCIAVTSANQRGPCKQILLETSRALNCVLLEAPS-------------------ILNY 298 (1255)
Q Consensus 240 ld~lG~Tle~Ia~~KagI~k~--g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~-------------------~~~~ 298 (1255)
+++|| |+|+|+++|++||+. +.++|++. +++....++ +.+...+++++.++. ...+
T Consensus 211 ld~~g-t~e~ia~aK~~i~~~~~~~~~V~n~-dd~~~~~~~-~~~~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f 287 (498)
T 1e8c_A 211 LDYHG-DMEHYEAAKWLLYSEHHCGQAIINA-DDEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATI 287 (498)
T ss_dssp HHHHS-SHHHHHHHHHHHHHTSBCCEEEEET-TSHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEE
T ss_pred hhccC-CHHHHHHHHHHHhccCCCCeEEEEC-CCHHHHHHH-HhhhccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEE
Confidence 99999 999999999999985 67788877 555444443 333222122222211 0112
Q ss_pred eec----CcccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCC
Q psy15432 299 RWR----GQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQG 374 (1255)
Q Consensus 299 ~~~----~~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1255)
.+. ...+.++++|.||++|+++|++++..+
T Consensus 288 ~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~l---------------------------------------------- 321 (498)
T 1e8c_A 288 RFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL---------------------------------------------- 321 (498)
T ss_dssp EEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred EEEECCceEEEEecCCcHHHHHHHHHHHHHHHHc----------------------------------------------
Confidence 221 114678999999999999999988764
Q ss_pred CccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEec-CcEEEEccCCCHHHHHHHHHHHHhhh
Q psy15432 375 HLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKS 452 (1255)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~-~~~vilDgAHnp~si~~~l~~l~~~~ 452 (1255)
|++ ++.|.+||++++ ||||||++... ++.||+||||||+|+++++++++...
T Consensus 322 -------------------------Gi~-~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~l~~l~~~~ 375 (498)
T 1e8c_A 322 -------------------------GYP-LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHC 375 (498)
T ss_dssp -------------------------TCC-HHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTC
T ss_pred -------------------------CCC-HHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC
Confidence 667 899999999998 99999999764 56899999999999999999998642
Q ss_pred hcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChh--hhhHHhhccCCCcEEEEcCCCCCCCC
Q psy15432 453 EAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPT--KLLSPLLQSNQFEYILVTPNILTNES 519 (1255)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~--~ll~~L~~~~~~d~vi~t~~~~~~~~ 519 (1255)
. +++++|||++++||.. .++..+ +...+|.+|+|+++++.++
T Consensus 376 ~------------------------~r~i~V~G~g~dr~~~~~~~~~~~-~~~~~d~vi~~~~~~r~e~ 419 (498)
T 1e8c_A 376 A------------------------GKLWCVFGCGGDRDKGKRPLMGAI-AEEFADVAVVTDDNPRTEE 419 (498)
T ss_dssp S------------------------SCEEEEECCCSSSCSTHHHHHHHH-HHHHCSEEEECCSCCBTSC
T ss_pred C------------------------CCEEEEECCCCCcchhHHHHHHHH-HHhCCCEEEEcCCCCCCCC
Confidence 1 2789999999988863 344444 3446899999988887665
No 12
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=5.3e-49 Score=478.74 Aligned_cols=414 Identities=20% Similarity=0.225 Sum_probs=304.8
Q ss_pred eeccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcH-HHHHHHHHhcchhHHHHHhhhcC-CCccccccc
Q psy15432 9 LKELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRESKLR-KDPVEMQAV 86 (1255)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~eai~~L~~l~~~~~~~~~~~~~-~~~~~~~~~ 86 (1255)
+.++..+..+||++.|+.+||+++|.+.+++.|+++...++..... ++.... ..... +.+ .+
T Consensus 59 ~~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~avv~~~~~~~------------~~~~~~~~~----~i 122 (535)
T 2wtz_A 59 DRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVA------------EIAGRAAVP----VL 122 (535)
T ss_dssp TCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHH------------HHCSCCSSC----EE
T ss_pred CcceeeEEecCCcCCCCCEEEEeccccccHHHHHHHHHHCCCeEEEEecCccc------------ccccCCCce----EE
Confidence 3578889999999999999999999999999988776665432111 111100 00000 212 25
Q ss_pred chHHHHHHHHHhcCCccCCC--CccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhh
Q psy15432 87 QVDQVVQYLGHLNITLDDIK--KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKF 164 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~~~--~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~f 164 (1255)
.+++++++|+.|+..+++.+ ++++||||||||||||++||++||+++|+++|+++|. ++.+||..++..
T Consensus 123 ~v~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~~~~~~~~-- 193 (535)
T 2wtz_A 123 VHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVGGADLPSA-- 193 (535)
T ss_dssp ECSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEETTEEECCS--
T ss_pred EECCHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeECCEecccC--
Confidence 68899999999987766655 7899999999999999999999999999999999984 599999988833
Q ss_pred hhHHHHHHHHHHhhhhccCCcchHHHHHHHHhh-hhhhccCCCEEEEeecc----CCccccccccCCccEEEEcCCCcch
Q psy15432 165 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSF-YVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDH 239 (1255)
Q Consensus 165 t~~~~~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~-~~F~~~~vD~aVlEvG~----GGr~D~tnii~~P~v~vITnIg~DH 239 (1255)
++.|+.++++++ ..|.++++|++|||||+ +||+|++ +|+++|||||+.||
T Consensus 194 ---------------------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DH 248 (535)
T 2wtz_A 194 ---------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RFAVGAFTNLSRDH 248 (535)
T ss_dssp ---------------------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CEEEEEECCCCSCC
T ss_pred ---------------------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----CcCEEEEcCCChHH
Confidence 233445555554 46689999999999997 5899885 47999999999999
Q ss_pred hhhcCCCHHHHHHHHHcccCCC-----ceeeeccCCCchHHHHHHHhhhccCceEEEcCC----------------ccee
Q psy15432 240 TAVLGNTIEEITMQKAGIMKPN-----CIAVTSANQRGPCKQILLETSRALNCVLLEAPS----------------ILNY 298 (1255)
Q Consensus 240 ld~lG~Tle~Ia~~KagI~k~g-----~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~----------------~~~~ 298 (1255)
+++|| |+|+|+++|++||++. ..+|++. +++....++. .+. ....|.... ...+
T Consensus 249 ld~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~-Dd~~~~~~~~-~~~--~v~~~g~~~~~~d~~~~~i~~~~~~g~~f 323 (535)
T 2wtz_A 249 LDFHP-SMADYFEAKASLFDPDSALRARTAVVCI-DDDAGRAMAA-RAA--DAITVSAADRPAHWRATDVAPTDAGGQQF 323 (535)
T ss_dssp TTTSS-SHHHHHHHHHTTTCTTSTTCCSEEEEEC-SSHHHHHHHH-HHS--SCEEEESSSSCCSEEEEEEEEETTTEEEE
T ss_pred hhhcC-CHHHHHHHHHHHhccccccCCCeEEEEC-CCHHHHHHHH-hcC--CEEEEecCCCcCcEEEEEEEEcCCCCeEE
Confidence 99999 9999999999999854 4677776 5554444433 332 122222211 1112
Q ss_pred eec---C--cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCC
Q psy15432 299 RWR---G--QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQ 373 (1255)
Q Consensus 299 ~~~---~--~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (1255)
.+. + ..+.++++|.||++|+++|++++..+
T Consensus 324 ~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l--------------------------------------------- 358 (535)
T 2wtz_A 324 TAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV--------------------------------------------- 358 (535)
T ss_dssp EEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHT---------------------------------------------
T ss_pred EEEeCCceEEEEEeCCCCHHHHHHHHHHHHHHHHc---------------------------------------------
Confidence 221 1 24678999999999999999988764
Q ss_pred CCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhcCCCCCceEEEEec-CcEEEEccCCCHHHHHHHHHHHHhhh
Q psy15432 374 GHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKS 452 (1255)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~~pGR~e~v~~~-~~~vilDgAHnp~si~~~l~~l~~~~ 452 (1255)
|++ .+.|.+||++++||||||++... ++++|+||||||+|+++++++++ .
T Consensus 359 --------------------------Gi~-~~~i~~~L~~~~~~gR~e~v~~~~~~~viiDyahNP~s~~aal~~l~-~- 409 (535)
T 2wtz_A 359 --------------------------GVS-PEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLA-H- 409 (535)
T ss_dssp --------------------------TCC-HHHHHHHHTTCCCTTSSEECCSSCSSEEEEECCCSHHHHHHHHHTTC-C-
T ss_pred --------------------------CCC-HHHHHHHHHhCCCCCceEEEEcCCCcEEEEECCCCHHHHHHHHHHhh-C-
Confidence 667 89999999999999999999764 67799999999999999999986 3
Q ss_pred hcccccCccCCCCCCCCCccCCCCCccEEEEEecCCCCChhh--hhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcc
Q psy15432 453 EAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTK--LLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRT 530 (1255)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~ 530 (1255)
.. +++++|||+++|||... ++..+ +...+|.+++++++++.+++....
T Consensus 410 ~~-----------------------~r~i~V~G~~gdr~~~~~~~~~~~-a~~~~d~vi~~~~~~r~e~~~~i~------ 459 (535)
T 2wtz_A 410 PD-----------------------RRLAVVFGAGGDRDPGKRAPMGRI-AAQLADLVVVTDDNPRDEDPTAIR------ 459 (535)
T ss_dssp SS-----------------------SCEEEEECCCTTSCGGGHHHHHHH-HHHHCSEEEECCSCCTTSCHHHHH------
T ss_pred CC-----------------------CcEEEEECCCCccchhhHHHHHHH-HHhcCCEEEEcCCCCCCCCHHHHH------
Confidence 21 27899999999998764 33333 234689999999888776530000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcE
Q psy15432 531 IDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKV 610 (1255)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (1255)
+.+............+
T Consensus 460 ----------------------------------------------------------------~~i~~g~~~~~~~~~~ 475 (535)
T 2wtz_A 460 ----------------------------------------------------------------REILAGAAEVGGDAQV 475 (535)
T ss_dssp ----------------------------------------------------------------HHHHHHHTTCC-CCEE
T ss_pred ----------------------------------------------------------------HHHHhhhhhcCCCCcE
Confidence 0111111110000246
Q ss_pred EEcCCHHHHHHHHhccCCCCCceEEEeccccccccc
Q psy15432 611 VEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAF 646 (1255)
Q Consensus 611 ~~~~si~~ai~~~~~~~~~~~~~vlvtGSlhLVGgv 646 (1255)
..++|+++|++.+.... .+++.|||+||.|.+.-.
T Consensus 476 ~~~~d~~~Ai~~a~~~a-~~gD~VLv~GsGhe~~q~ 510 (535)
T 2wtz_A 476 VEIADRRDAIRHAVAWA-RPGDVVLIAGKGHETGQR 510 (535)
T ss_dssp EECCSHHHHHHHHHHHC-CTTCEEEEESCTTCCCEE
T ss_pred EEECCHHHHHHHHHHhC-CCCCEEEEEeCCCcceEE
Confidence 78899999999998876 467899999999987654
No 13
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=2.2e-46 Score=452.05 Aligned_cols=400 Identities=17% Similarity=0.101 Sum_probs=287.0
Q ss_pred eEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccC---C-c-ccccccchHHHHHHH
Q psy15432 633 HILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRK---D-P-VEMQAVQVDQVVQYL 707 (1255)
Q Consensus 633 ~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g---~-~-~~~~~~~v~~~~~~L 707 (1255)
.=+.+.|+.+..|.|++..+++.+..+.-+ ++|++.=.. +...++..... . . .+.+...|++++++|
T Consensus 22 ~~v~~DSR~v~~g~lFval~G~~~DGh~fi----~~A~~~GA~----avv~~~~~~~~~~e~~~~~~~~~i~V~d~~~aL 93 (498)
T 1e8c_A 22 REMTLDSRVAAAGDLFVAVVGHQADGRRYI----PQAIAQGVA----AIIAEAKDEATDGEIREMHGVPVIYLSQLNERL 93 (498)
T ss_dssp CCEESCGGGCCTTCEEEECBCSSCBGGGGH----HHHHHTTCS----EEEEECTTTCCTTCEEEETTEEEEEETTHHHHH
T ss_pred eeEEeeCcCCCCCCEEEEecCCcCCHHHHH----HHHHHCCCe----EEEEcCccccccccccccCCccEEEECCHHHHH
Confidence 337899999999999999998776655322 444431000 00000000000 0 0 012336789999999
Q ss_pred HHhcCccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHH
Q psy15432 708 GHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYN 785 (1255)
Q Consensus 708 ~~Lg~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~ 785 (1255)
+.|+..+++. .++++||||||||||||++|+++||+++|+++|+++|++ ..+|+..++.
T Consensus 94 ~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~-------~~i~~~~~~~------------ 154 (498)
T 1e8c_A 94 SALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPT------------ 154 (498)
T ss_dssp HHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCC------------
T ss_pred HHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------cccCCeeeec------------
Confidence 9985544331 468999999999999999999999999999999999997 5666665441
Q ss_pred HHHHHhhcCCCCCcHHHHHHHHH-HHhhhcCCCCEEEEeccc----CCccccccccCCCcEEEEcCCCchhhhhcCCCHH
Q psy15432 786 ALHAKRKHAEDMPAYFKFLTVMS-FYVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIE 860 (1255)
Q Consensus 786 ~l~~~~~~~~~~pt~Fe~lT~mA-f~~F~~~~vD~aVlEVG~----GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tle 860 (1255)
.+++|+.+|+++ |.+|.++++|++|||||+ +|++|.+| |+++|||||+.||+++|| |+|
T Consensus 155 -----------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DHld~~g-t~e 218 (498)
T 1e8c_A 155 -----------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK----FAASVFTNLSRDHLDYHG-DME 218 (498)
T ss_dssp -----------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----CSEEEECCCCSCCHHHHS-SHH
T ss_pred -----------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----CCEEEEeCCChhhhhccC-CHH
Confidence 256777788775 778889999999999997 57888865 799999999999999999 999
Q ss_pred HHHHHHhccccC--CceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCc-------------------cceecc----CC
Q psy15432 861 EITMQKAGIMKP--NCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI-------------------LNYRWR----GQ 915 (1255)
Q Consensus 861 eIA~~KagI~K~--g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~-------------------~~~~~~----~~ 915 (1255)
+|+++|++||+. ++++|++. +++....++ +.+...+++++.++.. ..+.+. ..
T Consensus 219 ~ia~aK~~i~~~~~~~~~V~n~-dd~~~~~~~-~~~~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~ 296 (498)
T 1e8c_A 219 HYEAAKWLLYSEHHCGQAIINA-DDEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDG 296 (498)
T ss_dssp HHHHHHHHHHHTSBCCEEEEET-TSHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCE
T ss_pred HHHHHHHHHhccCCCCeEEEEC-CCHHHHHHH-HhhhccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEEEEEECCceE
Confidence 999999999985 77899987 444444433 3222222233333210 011111 12
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCC
Q psy15432 916 PLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPG 995 (1255)
Q Consensus 916 ~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 995 (1255)
.+.++++|.||++|+++|++++..
T Consensus 297 ~~~l~l~G~hnv~NalaAia~~~~-------------------------------------------------------- 320 (498)
T 1e8c_A 297 EIESHLMGAFNVSNLLLALATLLA-------------------------------------------------------- 320 (498)
T ss_dssp EEEECSCSHHHHHHHHHHHHHHHH--------------------------------------------------------
T ss_pred EEEecCCcHHHHHHHHHHHHHHHH--------------------------------------------------------
Confidence 467899999999999999998876
Q ss_pred CCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCc
Q psy15432 996 GQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQ 1072 (1255)
Q Consensus 996 ~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~ 1072 (1255)
+|++ +.|.+||++++ ||||||++... ++++|+||||||+||++++++++...
T Consensus 321 -----------------lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~DyahnP~s~~a~l~~l~~~~-------- 375 (498)
T 1e8c_A 321 -----------------LGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHC-------- 375 (498)
T ss_dssp -----------------TTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEECCCSHHHHHHHHHHHHHTC--------
T ss_pred -----------------cCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEECCCCHHHHHHHHHHHHhhC--------
Confidence 4666 67999999998 99999999865 66899999999999999999998642
Q ss_pred ccCCCCCcEEEEEecCCCCChh--hhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc-----ccccccCCHHHH
Q psy15432 1073 SKSSNVIQRILVFNVTGERDPT--KLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS-----TVQSINISLAIQ 1145 (1255)
Q Consensus 1073 ~~~~~~~~~vlVfg~~~drD~~--~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 1145 (1255)
.+++++|||++++||.. .++..+ ....+|.+++++++++.+.... +...... .......+.++.
T Consensus 376 -----~~r~i~V~G~g~dr~~~~~~~~~~~-~~~~~d~vi~~~~~~r~e~~~~---i~~~~~~~~~~~~~~~~~~~~~~a 446 (498)
T 1e8c_A 376 -----AGKLWCVFGCGGDRDKGKRPLMGAI-AEEFADVAVVTDDNPRTEEPRA---IINDILAGMLDAGHAKVMEGRAEA 446 (498)
T ss_dssp -----SSCEEEEECCCSSSCSTHHHHHHHH-HHHHCSEEEECCSCCBTSCHHH---HHHHHHTTSSCGGGSEECSCHHHH
T ss_pred -----CCCEEEEECCCCCcchhHHHHHHHH-HHhCCCEEEEcCCCCCCCCHHH---HHHHHHhhccccCceEEECCHHHH
Confidence 14789999999998863 344444 3345899999998875443211 0000000 011234588999
Q ss_pred HHHHHHHcCCCceEEeecCCCC
Q psy15432 1146 LAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1146 ~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
++.+.....+.+++|++|+.+.
T Consensus 447 i~~a~~~a~~gd~VLv~GkG~~ 468 (498)
T 1e8c_A 447 VTCAVMQAKENDVVLVAGKGHE 468 (498)
T ss_dssp HHHHHHHSCTTCEEEEESCTTC
T ss_pred HHHHHHhCCCCCEEEEecCCCc
Confidence 9999888889999999887654
No 14
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.7e-45 Score=439.39 Aligned_cols=383 Identities=14% Similarity=0.110 Sum_probs=274.1
Q ss_pred EEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHhcCc
Q psy15432 634 ILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNIT 713 (1255)
Q Consensus 634 vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~ 713 (1255)
=+++.|+.+..|.|++...+..+..+.-. ++|++. ... .. +..++.+.+.+.+.+++++++|++|+.+
T Consensus 26 ~i~~Dsr~v~~g~lf~al~G~~~dgh~f~----~~a~~~--Ga~---~v---v~~~~~~~~~p~i~v~~~~~~l~~la~~ 93 (452)
T 1gg4_A 26 AVTTDTRKLTPGCLFVALKGERFDAHDFA----DQAKAG--GAG---AL---LVSRPLDIDLPQLIVKDTRLAFGELAAW 93 (452)
T ss_dssp CEESCGGGCCTTCEEECCBCSSCBTTTTH----HHHHHT--TCC---EE---EESSCCSCSSCEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCcEEEEeCCCCCCHHHHH----HHHHHc--CCE---EE---EECCCcCCCCCEEEECCHHHHHHHHHHH
Confidence 37899999999999988776655444321 344431 000 00 0011211112346789999999999999
Q ss_pred ccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhc
Q psy15432 714 LDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKH 793 (1255)
Q Consensus 714 ~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~ 793 (1255)
++...++++||||||||||||++|+++||+++| +++ +++ . ++|++| |.|++
T Consensus 94 ~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~-g--~~n~~i---g~p~t--------------------- 144 (452)
T 1gg4_A 94 VRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA-G--NLNNDI---GVPMT--------------------- 144 (452)
T ss_dssp HHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC-T--TCCSTT---HHHHH---------------------
T ss_pred HhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc-c--cccCCc---chhHH---------------------
Confidence 876557899999999999999999999999999 555 544 3 777877 33311
Q ss_pred CCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccc---cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc
Q psy15432 794 AEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 870 (1255)
Q Consensus 794 ~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D---~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~ 870 (1255)
+|+ .+.++|++|+|||++|+.| .+|++ +|+++|||||+.||+++|| |+|+|+++|++||
T Consensus 145 ------~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~g-t~e~~~~aK~~i~ 206 (452)
T 1gg4_A 145 ------LLR----------LTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG-SLAGVAKAKGEIF 206 (452)
T ss_dssp ------HTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC---------CHHHHHHHHHGGG
T ss_pred ------HHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhcC-CHHHHHHHHHHHH
Confidence 111 3578999999999999988 78877 6999999999999999999 9999999999999
Q ss_pred c---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc---c--------------eecc--C--CccccCCCchhH
Q psy15432 871 K---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL---N--------------YRWR--G--QPLDEDWKSTVQ 926 (1255)
Q Consensus 871 K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~---~--------------~~~~--~--~~v~l~L~G~hq 926 (1255)
+ +++++|++. +++....++ + +.. +++++.++... + +.+. + ..+.++++|.||
T Consensus 207 ~~~~~~~~~V~n~-dd~~~~~~~-~-~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn 282 (452)
T 1gg4_A 207 SGLPENGIAIMNA-DNNDWLNWQ-S-VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHN 282 (452)
T ss_dssp GGCCTTCEEEEET-TBCCHHHHH-H-HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHH
T ss_pred hhcccCCEEEEeC-CcHHHHHHH-H-hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEEEEEeCCCcHHH
Confidence 7 788999998 555554443 2 222 45555554210 1 1111 1 146789999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccccc
Q psy15432 927 SINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSS 1006 (1255)
Q Consensus 927 ~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1006 (1255)
++|+++|++++..
T Consensus 283 ~~NalaA~a~~~~------------------------------------------------------------------- 295 (452)
T 1gg4_A 283 IANALAAAALSMS------------------------------------------------------------------- 295 (452)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 9999999998876
Q ss_pred ccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEE
Q psy15432 1007 LLMGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRI 1082 (1255)
Q Consensus 1007 ~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~v 1082 (1255)
+|++ +.+.+||++++ ||||||++... +.++|+| |||||+|+++++++++... ++++
T Consensus 296 ------lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~--------------~~~i 355 (452)
T 1gg4_A 296 ------VGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--------------GYRV 355 (452)
T ss_dssp ------TTCCHHHHHHHHTTCCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--------------SEEE
T ss_pred ------cCCCHHHHHHHHHhCCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc--------------CCEE
Confidence 4677 67999999997 99999999864 5778888 9999999999999998631 4689
Q ss_pred EEEecCC---C---CChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCC-
Q psy15432 1083 LVFNVTG---E---RDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMN- 1155 (1255)
Q Consensus 1083 lVfg~~~---d---rD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~- 1155 (1255)
+|||++. + ++...|.+.+ ....+|.+++++..+....... .. ..+..+.++.++.+.....+
T Consensus 356 ~V~G~~~e~g~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~i~~~~--------~~--~~~~~~~~~ai~~a~~~~~~~ 424 (452)
T 1gg4_A 356 LVVGDMAELGAESEACHVQVGEAA-KAAGIDRVLSVGKQSHAISTAS--------GV--GEHFADKTALITRLKLLIAEQ 424 (452)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHH-HHHTCSEEEEESSSTHHHHHHT--------TS--CEEESSHHHHHHHHHHHHHHC
T ss_pred EEECCccccCChhHHHHHHHHHHH-HHcCCCEEEEECcCHHHHHHHh--------hc--CceeCCHHHHHHHHHHhhccc
Confidence 9999983 3 3334455555 3336899999986654322211 11 12446889999888887777
Q ss_pred -CceEEeecCCCCCCcccccccc
Q psy15432 1156 -KSAELKRNQSSLPMGPHFEIDP 1177 (1255)
Q Consensus 1156 -~~~~l~~~~~~~~~~~~~~~~~ 1177 (1255)
.+++|++||+++.|+++++.|.
T Consensus 425 ~gd~VLv~GS~~~~~e~i~~~l~ 447 (452)
T 1gg4_A 425 QVITILVKGSRSAAMEEVVRALQ 447 (452)
T ss_dssp SSEEEEEECCGGGTTHHHHHHHC
T ss_pred CCcEEEEEcCCcCCHHHHHHHHH
Confidence 8999999999999999998875
No 15
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=1.1e-44 Score=440.79 Aligned_cols=395 Identities=18% Similarity=0.199 Sum_probs=284.8
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccHHHHHHHHHh--cchhHHHHHHhhcc-CCcccccccchHHHHHHHH
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNT--LQSNIRTIRESKLR-KDPVEMQAVQVDQVVQYLG 708 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y~~a~~~L~~--lqsn~~~l~~~~~~-g~~~~~~~~~v~~~~~~L~ 708 (1255)
+.=+.+.|+.+..|.|++...+..+..+.-+ ++|++.=-. +.+. ......... +. +...+++++++|+
T Consensus 62 i~~v~~DSR~v~~g~lFval~G~~~dGh~fi----~~A~~~GA~avv~~~-~~~~~~~~~~~~----~~i~v~d~~~aL~ 132 (535)
T 2wtz_A 62 VTGVTLRAQDVSPGDLFAALTGSTTHGARHV----GDAIARGAVAVLTDP-AGVAEIAGRAAV----PVLVHPAPRGVLG 132 (535)
T ss_dssp CCEEESCGGGCCTTEEEEECBCSSCBGGGGH----HHHHHTTCCEEEECH-HHHHHHCSCCSS----CEEECSSSHHHHH
T ss_pred eeeEEecCCcCCCCCEEEEeccccccHHHHH----HHHHHCCCeEEEEec-CcccccccCCCc----eEEEECCHHHHHH
Confidence 4448899999999999999987766544322 444431000 1110 000001001 22 2367889999999
Q ss_pred HhcCccccc--ccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHH
Q psy15432 709 HLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNA 786 (1255)
Q Consensus 709 ~Lg~~~~~~--~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~ 786 (1255)
.|+...++. .++++||||||||||||++||++||+++|+++|+++|. ++.+||.+++..
T Consensus 133 ~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~~~~~~~~------------ 193 (535)
T 2wtz_A 133 GLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVGGADLPSA------------ 193 (535)
T ss_dssp HHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEETTEEECCS------------
T ss_pred HHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeECCEecccC------------
Confidence 885443332 36899999999999999999999999999999999984 588999887744
Q ss_pred HHHHhhcCCCCCcHHHHHHHHHH-HhhhcCCCCEEEEeccc----CCccccccccCCCcEEEEcCCCchhhhhcCCCHHH
Q psy15432 787 LHAKRKHAEDMPAYFKFLTVMSF-YVFVKEKPDAVIMEVGI----GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEE 861 (1255)
Q Consensus 787 l~~~~~~~~~~pt~Fe~lT~mAf-~~F~~~~vD~aVlEVG~----GGr~D~TNvi~~P~VavITnIg~DHl~~LG~Tlee 861 (1255)
+++|+.+++.++ ..|.++++|++|||||+ +|++|.+ +|+++|||||+.||+++|| |+|+
T Consensus 194 -----------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DHld~~g-s~e~ 257 (535)
T 2wtz_A 194 -----------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RFAVGAFTNLSRDHLDFHP-SMAD 257 (535)
T ss_dssp -----------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CEEEEEECCCCSCCTTTSS-SHHH
T ss_pred -----------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----CcCEEEEcCCChHHhhhcC-CHHH
Confidence 345667777776 46789999999999997 4788875 4899999999999999999 9999
Q ss_pred HHHHHhccccC-----CceEEEccCCCChhHHHHHHHhhhcCCeEEEcC------------------Cccceecc---C-
Q psy15432 862 ITMQKAGIMKP-----NCIAVTSANQRGPCKQILLETSRALNCVLLEAP------------------SILNYRWR---G- 914 (1255)
Q Consensus 862 IA~~KagI~K~-----g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~------------------~~~~~~~~---~- 914 (1255)
|+++|++||++ ++.+|++. +++....++ +.+. +++.++ ....+.+. +
T Consensus 258 ia~aK~~i~~~~~~~~~g~~Vln~-Dd~~~~~~~-~~~~----~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~ 331 (535)
T 2wtz_A 258 YFEAKASLFDPDSALRARTAVVCI-DDDAGRAMA-ARAA----DAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGV 331 (535)
T ss_dssp HHHHHHTTTCTTSTTCCSEEEEEC-SSHHHHHHH-HHHS----SCEEEESSSSCCSEEEEEEEEETTTEEEEEEECTTSC
T ss_pred HHHHHHHHhccccccCCCeEEEEC-CCHHHHHHH-HhcC----CEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEeCCce
Confidence 99999999984 45788887 444334433 3332 111111 00112221 1
Q ss_pred -CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCC
Q psy15432 915 -QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSET 993 (1255)
Q Consensus 915 -~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1255)
..+.++++|.||++|+++|++++..
T Consensus 332 ~~~~~l~l~G~hnv~NalaAia~a~~------------------------------------------------------ 357 (535)
T 2wtz_A 332 GHHIGIRLPGRYNVANCLVALAILDT------------------------------------------------------ 357 (535)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHHHH------------------------------------------------------
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence 2477899999999999999998876
Q ss_pred CCCCCCcccccccccCCCCCCCC-HHHHHHHhcCCCCCcEEEEeec-CcEEEEEcCcCHHHHHHHHHHHHhhhccccCCC
Q psy15432 994 PGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACVWPGRVQVIRKN-NFKYFLDGAHTTDSIELCAKWFLRKSEAEANPT 1071 (1255)
Q Consensus 994 ~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~~pGR~E~v~~~-~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~ 1071 (1255)
+|++ +.|.+||++++||||||++... +.++|+||||||+||++++++++ ..
T Consensus 358 -------------------lGi~~~~i~~~L~~~~~~gR~e~v~~~~~~~viiDyahNP~s~~aal~~l~-~~------- 410 (535)
T 2wtz_A 358 -------------------VGVSPEQAVPGLREIRVPGRLEQIDRGQGFLALVDYAHKPEALRSVLTTLA-HP------- 410 (535)
T ss_dssp -------------------TTCCHHHHHHHHTTCCCTTSSEECCSSCSSEEEEECCCSHHHHHHHHHTTC-CS-------
T ss_pred -------------------cCCCHHHHHHHHHhCCCCCceEEEEcCCCcEEEEECCCCHHHHHHHHHHhh-CC-------
Confidence 4677 6799999999999999999865 66799999999999999999987 32
Q ss_pred cccCCCCCcEEEEEecCCCCChhh--hhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcc----ccc----ccccccCC
Q psy15432 1072 QSKSSNVIQRILVFNVTGERDPTK--LLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDED----WKS----TVQSINIS 1141 (1255)
Q Consensus 1072 ~~~~~~~~~~vlVfg~~~drD~~~--ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~----~~~----d~~~~~~~ 1141 (1255)
.+++++|||+++|||... ++..+ ....+|.+++++++++.+.... +... ... ....+..+
T Consensus 411 ------~~r~i~V~G~~gdr~~~~~~~~~~~-a~~~~d~vi~~~~~~r~e~~~~---i~~~i~~g~~~~~~~~~~~~~~d 480 (535)
T 2wtz_A 411 ------DRRLAVVFGAGGDRDPGKRAPMGRI-AAQLADLVVVTDDNPRDEDPTA---IRREILAGAAEVGGDAQVVEIAD 480 (535)
T ss_dssp ------SSCEEEEECCCTTSCGGGHHHHHHH-HHHHCSEEEECCSCCTTSCHHH---HHHHHHHHHTTCC-CCEEEECCS
T ss_pred ------CCcEEEEECCCCccchhhHHHHHHH-HHhcCCEEEEcCCCCCCCCHHH---HHHHHHhhhhhcCCCCcEEEECC
Confidence 147899999999998664 33333 2335899999998876443211 0000 000 01123458
Q ss_pred HHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1142 LAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1142 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.++.++.+.....+.+++|++|+...
T Consensus 481 ~~~Ai~~a~~~a~~gD~VLv~GsGhe 506 (535)
T 2wtz_A 481 RRDAIRHAVAWARPGDVVLIAGKGHE 506 (535)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCTTC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 89999999998899999999999764
No 16
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=4.5e-45 Score=435.78 Aligned_cols=388 Identities=12% Similarity=0.087 Sum_probs=279.8
Q ss_pred ceEEEecccccccccceeeccCCCCCCCCCCcccH-HHHHHHHHhcchhHHHHHHhhccCCcccccccchHHHHHHHHHh
Q psy15432 632 YHILVTGSLHLVGAFLNVLITPHASRSNKEIPQSY-VDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHL 710 (1255)
Q Consensus 632 ~~vlvtGSlhLVGgvL~~l~~~ha~~~~~~~~~~y-~~a~~~L~~lqsn~~~l~~~~~~g~~~~~~~~~v~~~~~~L~~L 710 (1255)
+.=+++.|+.+..|.|++...+. +..+. | ++|++. ... .. +..++.+ +.+...+++++++|+.|
T Consensus 26 i~~i~~Dsr~v~~g~lF~al~G~-~dgh~-----~~~~a~~~--Ga~---~v---v~~~~~~-~~p~i~v~~~~~al~~l 90 (454)
T 2am1_A 26 LEKAEFDSRLIGTGDLFVPLKGA-RDGHD-----FIETAFEN--GAA---VT---LSEKEVS-NHPYILVDDVLTAFQSL 90 (454)
T ss_dssp CCCEESCGGGCCTTCEECCCBSS-SBGGG-----GHHHHHHH--TCS---EE---EESSCCC-SSCEEECSCHHHHHHHH
T ss_pred eeeEEEeCCCCCCCCEEEEccCC-cchHH-----HHHHHHHC--CCE---EE---EECCCCC-CCCEEEECCHHHHHHHH
Confidence 34478999999999999887765 44332 3 344431 000 00 0011211 22346789999999999
Q ss_pred cCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHH
Q psy15432 711 NITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAK 790 (1255)
Q Consensus 711 g~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~ 790 (1255)
+.+++...++++||||||||||||++|+++||+++|+ .++||| ++|++| |.|+
T Consensus 91 a~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~---~~~s~g--~~n~~i---g~p~------------------- 143 (454)
T 2am1_A 91 ASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK---TYKTQG--NYNNEI---GLPY------------------- 143 (454)
T ss_dssp HHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC---EEECCT--TCCSTT---HHHH-------------------
T ss_pred HHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC---EeecCC--ccCccc---chHH-------------------
Confidence 9988765578999999999999999999999999995 478998 888887 3331
Q ss_pred hhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccCCccc---cccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHh
Q psy15432 791 RKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKA 867 (1255)
Q Consensus 791 ~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D---~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~Ka 867 (1255)
++|+ .++++|++|||||++|+.| .+|++ +|+++|||||+.||+++|| |+|+|+++|+
T Consensus 144 --------t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~g-t~e~~a~aK~ 203 (454)
T 2am1_A 144 --------TVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFFK-DRSEIAKGKM 203 (454)
T ss_dssp --------HHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTCC-CHHHHHHHHG
T ss_pred --------HHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhcC-CHHHHHHHHH
Confidence 1121 3678999999999999888 88877 6999999999999999999 9999999999
Q ss_pred cccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCcc--------------ceecc--CCccccCCCchhHHH
Q psy15432 868 GIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSIL--------------NYRWR--GQPLDEDWKSTVQSI 928 (1255)
Q Consensus 868 gI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~--------------~~~~~--~~~v~l~L~G~hq~~ 928 (1255)
+||+ +++++|++. + + ... +.+.. +++++.++... .+.+. +..+.++++|.||++
T Consensus 204 ~i~~~~~~~~~~V~n~-d-d-~~~---~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~~l~l~G~hn~~ 276 (454)
T 2am1_A 204 QIADGMASGSLLLAPA-D-P-IVE---DYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNAT 276 (454)
T ss_dssp GGGTTCCTTCEEEEES-C-G-GGG---GGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEEEESSCCHHHHH
T ss_pred HHHhhcccCCEEEEEc-H-H-HHH---HHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEEEecCCCHHHHH
Confidence 9998 678899987 3 3 332 22322 45555554210 11111 114778999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCccccccccc
Q psy15432 929 NISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLL 1008 (1255)
Q Consensus 929 Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 1008 (1255)
|+++|++++..
T Consensus 277 NalaA~a~~~~--------------------------------------------------------------------- 287 (454)
T 2am1_A 277 NAMIASYVALQ--------------------------------------------------------------------- 287 (454)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 99999998876
Q ss_pred CCCCCCCC-HHHHHHHhcCC-CCCcEEEEeec-CcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEE
Q psy15432 1009 MGPHFEID-PKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILV 1084 (1255)
Q Consensus 1009 ~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~~-~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlV 1084 (1255)
+|++ +.+.+||++++ ||||||++... +.+||.| |||||+|+++++++++..... .++++++|
T Consensus 288 ----lgi~~~~i~~~L~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~----------~~~~~i~V 353 (454)
T 2am1_A 288 ----EGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPAN----------EGGKKIAV 353 (454)
T ss_dssp ----TTCCHHHHHHHGGGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSCCC----------SSCEEEEE
T ss_pred ----cCCCHHHHHHHHHhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcccc----------cCCCEEEE
Confidence 4666 67999999999 99999999864 5665555 999999999999999764200 01468999
Q ss_pred EecCC---CC---ChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccccc-cc-----ccCCHHHHHHHHHHH
Q psy15432 1085 FNVTG---ER---DPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTV-QS-----INISLAIQLAYLWMF 1152 (1255)
Q Consensus 1085 fg~~~---dr---D~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~-~~-----~~~~~~~~~~~~~~~ 1152 (1255)
||++. ++ +...|.+.+ ....+|.++++++.+....... ........ .. ...+.++.++.+...
T Consensus 354 ~G~~~e~G~~~~~~~~~~~~~~-~~~~~d~vi~~g~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~ 428 (454)
T 2am1_A 354 LADMKELGDQSVQLHNQMILSL-SPDVLDIVIFYGEDIAQLAQLA----SQMFPIGHVYYFKKTEDQDQFEDLVKQVKES 428 (454)
T ss_dssp EECCCCCCTTHHHHHHHGGGGC-CTTTCSEEEEEESTTHHHHHHH----HHHSCTTCEEEEEBSSSCBTHHHHHHHHHHH
T ss_pred ECCchhcCcHHHHHHHHHHHHH-HhcCCCEEEEECcCHHHHHHHH----hhccccCcceeeecccCCCCHHHHHHHHHHh
Confidence 99973 32 233455555 3445899999987654322110 00000000 01 224889999999999
Q ss_pred cCCCceEEeecCCCCCCccccccc
Q psy15432 1153 RMNKSAELKRNQSSLPMGPHFEID 1176 (1255)
Q Consensus 1153 ~~~~~~~l~~~~~~~~~~~~~~~~ 1176 (1255)
..+.+++|++||+++.|+++++.|
T Consensus 429 a~~gd~VLv~GS~~~~~e~~~~~l 452 (454)
T 2am1_A 429 LGAHDQILLKGSNSMNLAKLVESL 452 (454)
T ss_dssp CCTTEEEEEESSCCHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCcCCHHHHHHHH
Confidence 999999999999999999988765
No 17
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=9.2e-45 Score=433.07 Aligned_cols=334 Identities=16% Similarity=0.138 Sum_probs=239.6
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|.+.+++.|..+...+....- +.+. .+. .+.| .+.++
T Consensus 22 ~~i~~i~~Dsr~v~~g~lf~al~G~~~dgh~f~~~a~~~Ga~~v----------v~~~-----~~~-~~~p----~i~v~ 81 (452)
T 1gg4_A 22 ITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGAL----------LVSR-----PLD-IDLP----QLIVK 81 (452)
T ss_dssp CEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEE----------EESS-----CCS-CSSC----EEEES
T ss_pred ceEEEEEEeCCCcCCCcEEEEeCCCCCCHHHHHHHHHHcCCEEE----------EECC-----CcC-CCCC----EEEEC
Confidence 46888999999999999999999998888776433222111000 0000 000 0112 26789
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHH
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~ 169 (1255)
+++++|++|+.++++..++++||||||||||||++|+++||+++| +++ +|+. +++++|. .|
T Consensus 82 ~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~g---~~n~~ig---~p----------- 142 (452)
T 1gg4_A 82 DTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTAG---NLNNDIG---VP----------- 142 (452)
T ss_dssp CHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECCT---TCCSTTH---HH-----------
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-eccc---cccCCcc---hh-----------
Confidence 999999999999876567899999999999999999999999999 565 5542 4555541 11
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccc---cccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D---~tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
+++|+ .++++|++|||+|++|++| .+|++ +|+++|||||+.||+|+|| |
T Consensus 143 ----------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~g-t 194 (452)
T 1gg4_A 143 ----------------MTLLR----------LTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGFG-S 194 (452)
T ss_dssp ----------------HHHTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC---------C
T ss_pred ----------------HHHHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhcC-C
Confidence 11211 2578999999999999998 88876 6999999999999999999 9
Q ss_pred HHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc---c--------------eeeec--C--
Q psy15432 247 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI---L--------------NYRWR--G-- 302 (1255)
Q Consensus 247 le~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~---~--------------~~~~~--~-- 302 (1255)
+|+|+++|++||+ ++.++|++. +++.....+ + +.. +++++.++.. . .+.+. +
T Consensus 195 ~e~~~~aK~~i~~~~~~~~~~V~n~-dd~~~~~~~-~-~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~ 270 (452)
T 1gg4_A 195 LAGVAKAKGEIFSGLPENGIAIMNA-DNNDWLNWQ-S-VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGS 270 (452)
T ss_dssp HHHHHHHHHGGGGGCCTTCEEEEET-TBCCHHHHH-H-HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhhcccCCEEEEeC-CcHHHHHHH-H-hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCE
Confidence 9999999999997 678888887 666555443 2 222 2333333211 0 11111 1
Q ss_pred cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCC
Q psy15432 303 QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETP 382 (1255)
Q Consensus 303 ~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1255)
..+.++++|.||++|+++|++++..+
T Consensus 271 ~~~~l~l~G~hn~~NalaA~a~~~~l------------------------------------------------------ 296 (452)
T 1gg4_A 271 VDVLLPLPGRHNIANALAAAALSMSV------------------------------------------------------ 296 (452)
T ss_dssp EEEEECSSSTHHHHHHHHHHHHHHHT------------------------------------------------------
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHc------------------------------------------------------
Confidence 14678999999999999999988764
Q ss_pred CCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccC
Q psy15432 383 GGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSS 459 (1255)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~ 459 (1255)
|++ ++.|.+||++++ ||||||++.. +++.||+| |||||+|+++++++++... +
T Consensus 297 -----------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~--~---- 352 (452)
T 1gg4_A 297 -----------------GAT-LDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--G---- 352 (452)
T ss_dssp -----------------TCC-HHHHHHHHTTCCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--S----
T ss_pred -----------------CCC-HHHHHHHHHhCCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc--C----
Confidence 667 899999999997 9999999986 46788999 9999999999999998642 1
Q ss_pred ccCCCCCCCCCccCCCCCccEEEEEecC---CC---CChhhhhHHhhccCCCcEEEEcC
Q psy15432 460 RSVSSCPLDPTQSKSSNVIQRILVFNVT---GE---RDPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~ilVfg~~---~d---rD~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
++++|||++ ++ +++..|.+.+ +...+|.+|+|.
T Consensus 353 -------------------~~i~V~G~~~e~g~~~~~~~~~~~~~~-~~~~~d~vi~~g 391 (452)
T 1gg4_A 353 -------------------YRVLVVGDMAELGAESEACHVQVGEAA-KAAGIDRVLSVG 391 (452)
T ss_dssp -------------------EEEEEECCCCCCTTHHHHHHHHHHHHH-HHHTCSEEEEES
T ss_pred -------------------CEEEEECCccccCChhHHHHHHHHHHH-HHcCCCEEEEEC
Confidence 789999997 33 3345566666 333689999986
No 18
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=3e-44 Score=428.73 Aligned_cols=335 Identities=14% Similarity=0.120 Sum_probs=244.5
Q ss_pred eccccccccccccCCCceeEeecccccCCcccccccCCCCCCCcHHHHHHHHHhcchhHHHHHhhhcCCCcccccccchH
Q psy15432 10 KELKLNKDAHRKTLPDKTEVHHGGYKHGAVTPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVD 89 (1255)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~eai~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (1255)
.+++.+..+||++.|+.+||+.+|. .+++.+.. +|++.=-.. . +..++.+ +...+.++
T Consensus 24 ~~i~~i~~Dsr~v~~g~lF~al~G~-~dgh~~~~------------~a~~~Ga~~-----v---v~~~~~~-~~p~i~v~ 81 (454)
T 2am1_A 24 TQLEKAEFDSRLIGTGDLFVPLKGA-RDGHDFIE------------TAFENGAAV-----T---LSEKEVS-NHPYILVD 81 (454)
T ss_dssp CBCCCEESCGGGCCTTCEECCCBSS-SBGGGGHH------------HHHHHTCSE-----E---EESSCCC-SSCEEECS
T ss_pred ceeeeEEEeCCCCCCCCEEEEccCC-cchHHHHH------------HHHHCCCEE-----E---EECCCCC-CCCEEEEC
Confidence 4688899999999999999999998 76666532 333210000 0 0001100 01125688
Q ss_pred HHHHHHHHhcCCccCCCCccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHH
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFW 169 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~ 169 (1255)
+++++|+.|+.++++.+++++||||||||||||++|+++||+++|+ .++||| +++++|. .|
T Consensus 82 ~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~---~~~s~g--~~n~~ig---~p----------- 142 (454)
T 2am1_A 82 DVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK---TYKTQG--NYNNEIG---LP----------- 142 (454)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC---EEECCT--TCCSTTH---HH-----------
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC---EeecCC--ccCcccc---hH-----------
Confidence 9999999999998765688999999999999999999999999995 478898 5666551 11
Q ss_pred HHHHHHHhhhhccCCcchHHHHHHHHhhhhhhccCCCEEEEeeccCCccc---cccccCCccEEEEcCCCcchhhhcCCC
Q psy15432 170 TVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYD---NTNIIPNTAVVGITSLGYDHTAVLGNT 246 (1255)
Q Consensus 170 ~v~~~l~~~~~~~~~~p~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D---~tnii~~P~v~vITnIg~DHld~lG~T 246 (1255)
+++|+ .++++|++|||+|++|++| .+|++ +|+++|||||+.||+|+|| |
T Consensus 143 ----------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~g-t 194 (454)
T 2am1_A 143 ----------------YTVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFFK-D 194 (454)
T ss_dssp ----------------HHHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTCC-C
T ss_pred ----------------HHHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhcC-C
Confidence 12222 2578999999999999998 88876 6999999999999999999 9
Q ss_pred HHHHHHHHHcccC---CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCc--c------------eeeecC--ccccc
Q psy15432 247 IEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSI--L------------NYRWRG--QPLDE 307 (1255)
Q Consensus 247 le~Ia~~KagI~k---~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--~------------~~~~~~--~~i~l 307 (1255)
+|+|+++|++||+ ++.++|++. ++ ... +.+.. +++++.++.. . .+.+.. ..+.+
T Consensus 195 ~e~~a~aK~~i~~~~~~~~~~V~n~-dd--~~~---~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~~l 267 (454)
T 2am1_A 195 RSEIAKGKMQIADGMASGSLLLAPA-DP--IVE---DYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDL 267 (454)
T ss_dssp HHHHHHHHGGGGTTCCTTCEEEEES-CG--GGG---GGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEEEE
T ss_pred HHHHHHHHHHHHhhcccCCEEEEEc-HH--HHH---HHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEEEe
Confidence 9999999999998 677888876 43 332 22222 3344433310 0 122211 14678
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCC
Q psy15432 308 DWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH 387 (1255)
Q Consensus 308 ~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1255)
+++|.||++|+++|++++..+
T Consensus 268 ~l~G~hn~~NalaA~a~~~~l----------------------------------------------------------- 288 (454)
T 2am1_A 268 PVTGKYNATNAMIASYVALQE----------------------------------------------------------- 288 (454)
T ss_dssp SSCCHHHHHHHHHHHHHHHHT-----------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999999999999988764
Q ss_pred ccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEec-CcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCC
Q psy15432 388 LTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRKN-NFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSS 464 (1255)
Q Consensus 388 ~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~~-~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~ 464 (1255)
|++ +++|.+||++++ ||||||++... +..||.| |||||+|+++++++++.....
T Consensus 289 ------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~---------- 345 (454)
T 2am1_A 289 ------------GVS-EEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPAN---------- 345 (454)
T ss_dssp ------------TCC-HHHHHHHGGGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSCCC----------
T ss_pred ------------CCC-HHHHHHHHHhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcccc----------
Confidence 667 899999999999 99999999863 5665656 999999999999999754210
Q ss_pred CCCCCCccCCCCCccEEEEEecC---CCC---ChhhhhHHhhccCCCcEEEEcCCC
Q psy15432 465 CPLDPTQSKSSNVIQRILVFNVT---GER---DPTKLLSPLLQSNQFEYILVTPNI 514 (1255)
Q Consensus 465 ~~~~~~~~~~~~~~~~ilVfg~~---~dr---D~~~ll~~L~~~~~~d~vi~t~~~ 514 (1255)
.++++++|||++ +++ +++.|++.+ +...+|.+|+|.++
T Consensus 346 -----------~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~-~~~~~d~vi~~g~~ 389 (454)
T 2am1_A 346 -----------EGGKKIAVLADMKELGDQSVQLHNQMILSL-SPDVLDIVIFYGED 389 (454)
T ss_dssp -----------SSCEEEEEEECCCCCCTTHHHHHHHGGGGC-CTTTCSEEEEEEST
T ss_pred -----------cCCCEEEEECCchhcCcHHHHHHHHHHHHH-HhcCCCEEEEECcC
Confidence 002789999987 333 344555555 33358999998643
No 19
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=1.4e-39 Score=390.48 Aligned_cols=318 Identities=15% Similarity=0.117 Sum_probs=232.9
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+....+
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 162 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLD------PT-------FVNGGLVKSAGKNA---------------------- 162 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCccccccccc----------------------
Confidence 48999999999999999999999999996 44 35566555422110
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc---CCCcee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~---k~g~~~ 264 (1255)
...++|++|+|+| ++|+++...+|+++|||||+.||+|+||+|+|+|+++|+.|+ +++.++
T Consensus 163 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 163 -------------HLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 1247899999996 677888877899999999999999999779999999998876 567788
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCc--------------ceeeec--C---cccccCCCchhHHhhHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSI--------------LNYRWR--G---QPLDEDWKSTVQSINISLAIQLA 325 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~--------------~~~~~~--~---~~i~l~l~G~~q~~Na~lAia~a 325 (1255)
|++. +++.+..++.+... ....|..... ..|.+. + ..+.++++|.||++|+++|++++
T Consensus 227 V~n~-dd~~~~~~~~~~~~--~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~ 303 (475)
T 1p3d_A 227 VMCA-DDPVLMELVPKVGR--QVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVA 303 (475)
T ss_dssp EEET-TCHHHHHHHHHHCS--EEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHHhcCC--CEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHHH
Confidence 8887 66666555544211 1112221110 012211 1 14678999999999999999988
Q ss_pred HHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChH
Q psy15432 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 405 (1255)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e 405 (1255)
..+ +++ ++
T Consensus 304 ~~l-----------------------------------------------------------------------gi~-~~ 311 (475)
T 1p3d_A 304 KEE-----------------------------------------------------------------------GIA-NE 311 (475)
T ss_dssp HHT-----------------------------------------------------------------------TCC-HH
T ss_pred HHc-----------------------------------------------------------------------CCC-HH
Confidence 764 667 89
Q ss_pred HHHHHHhcCC-CCCceEEEEe-----cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCcc
Q psy15432 406 KTYRGIKACV-WPGRVQVIRK-----NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQ 479 (1255)
Q Consensus 406 ~i~~gL~~~~-~pGR~e~v~~-----~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1255)
.|++||++|+ ||||||++.. +++.||+||||||+++++++++++..... ++
T Consensus 312 ~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~DyaHnp~~~~a~l~al~~~~~~-----------------------~~ 368 (475)
T 1p3d_A 312 AILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGD-----------------------KR 368 (475)
T ss_dssp HHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHCS-----------------------SC
T ss_pred HHHHHHHhCCCCCCCCEEEecccccCCCcEEEEeCCCCHHHHHHHHHHHHhhcCC-----------------------Ce
Confidence 9999999999 9999999976 26789999999999999999999875422 27
Q ss_pred EEEEEecCC-CC--C-hhhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCC
Q psy15432 480 RILVFNVTG-ER--D-PTKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPN 555 (1255)
Q Consensus 480 ~ilVfg~~~-dr--D-~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1255)
+++|||+.+ +| + ...|.+.+ . .+|.+|+|++++++|.|. .+.
T Consensus 369 i~~v~g~~~~~r~~~~~~~~~~~~--~-~~d~vi~t~~~~~~e~~~---~g~---------------------------- 414 (475)
T 1p3d_A 369 IVMIFQPHRYSRTRDLFDDFVQVL--S-QVDALIMLDVYAAGEAPI---VGA---------------------------- 414 (475)
T ss_dssp EEEEECCBCHHHHHHTHHHHHHHH--T-TSSEEEEECCBCTTCCCC---TTC----------------------------
T ss_pred EEEEECCCCCccHHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCCC---CCC----------------------------
Confidence 899999743 33 3 34555555 2 589999999988887641 000
Q ss_pred CCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEE
Q psy15432 556 VGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHIL 635 (1255)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vl 635 (1255)
..+.|++.+..... ..+..++|+++|++.+.... .+++.||
T Consensus 415 -------------------------------------~~~~l~~~~~~~~~-~~~~~~~~~~~ai~~a~~~a-~~gd~VL 455 (475)
T 1p3d_A 415 -------------------------------------DSKSLCRSIRNLGK-VDPILVSDTSQLGDVLDQII-QDGDLIL 455 (475)
T ss_dssp -------------------------------------SHHHHHHHHHHHTS-CCCEEESCGGGHHHHHHHHC-CTTCEEE
T ss_pred -------------------------------------CHHHHHHHHHhhCC-CceEEECCHHHHHHHHHHhC-CCCCEEE
Confidence 00223333332211 13567899999999999876 4677899
Q ss_pred Ee--cccccccccc
Q psy15432 636 VT--GSLHLVGAFL 647 (1255)
Q Consensus 636 vt--GSlhLVGgvL 647 (1255)
|+ ||+|+++..|
T Consensus 456 v~G~Gs~~~v~~~l 469 (475)
T 1p3d_A 456 AQGAGSVSKISRGL 469 (475)
T ss_dssp EECSSTHHHHHHHH
T ss_pred EECCCCHHHHHHHH
Confidence 99 9999998765
No 20
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=3.9e-39 Score=388.33 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=197.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+.....
T Consensus 119 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 163 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLD------PT-------FVNGGLVKAAGVHA---------------------- 163 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCeeccccccc----------------------
Confidence 48999999999999999999999999986 44 34556655422100
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHccc---CCCcee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~---k~g~~~ 264 (1255)
...++|++|+|+| ++|+++.+.+|+++|||||+.||+|+||+|+|+|+++|+.|+ +++.++
T Consensus 164 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 164 -------------RLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------cCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 1247899999996 678888877899999999999999999779999999998877 567788
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcC--Ccc--------------eeeec--C---cccccCCCchhHHhhHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAP--SIL--------------NYRWR--G---QPLDEDWKSTVQSINISLAIQ 323 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~--~~~--------------~~~~~--~---~~i~l~l~G~~q~~Na~lAia 323 (1255)
|++. +++.+..++.+. +++++.++ ... .+.+. + ..+.++++|.||++|+++|++
T Consensus 228 V~n~-dd~~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia 302 (491)
T 2f00_A 228 VMCV-DDPVIRELLPRV----GRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVA 302 (491)
T ss_dssp EEET-TSHHHHHHGGGC----CSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHHhc----CCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHH
Confidence 8887 665554443321 22332221 110 12221 1 146789999999999999999
Q ss_pred HHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCC
Q psy15432 324 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 403 (1255)
Q Consensus 324 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 403 (1255)
++..+ +++
T Consensus 303 ~a~~l-----------------------------------------------------------------------gi~- 310 (491)
T 2f00_A 303 VATEE-----------------------------------------------------------------------GID- 310 (491)
T ss_dssp HHHHH-----------------------------------------------------------------------TCC-
T ss_pred HHHHc-----------------------------------------------------------------------CCC-
Confidence 98776 567
Q ss_pred hHHHHHHHhcCC-CCCceEEEEe---------cC-cEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCcc
Q psy15432 404 DPKTYRGIKACV-WPGRVQVIRK---------NN-FKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQS 472 (1255)
Q Consensus 404 ~e~i~~gL~~~~-~pGR~e~v~~---------~~-~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1255)
++.|++||++|+ ||||||++.. ++ +.||+||||||+++++++++++.....
T Consensus 311 ~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~al~~~~~~------------------ 372 (491)
T 2f00_A 311 DEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPD------------------ 372 (491)
T ss_dssp HHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCCS------------------
T ss_pred HHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHHHHHhhcCC------------------
Confidence 899999999999 9999999986 26 899999999999999999999864321
Q ss_pred CCCCCccEEEEEecC---CCCC-hhhhhHHhhccCCCcEEEEcCCCCCCCCC
Q psy15432 473 KSSNVIQRILVFNVT---GERD-PTKLLSPLLQSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 473 ~~~~~~~~ilVfg~~---~drD-~~~ll~~L~~~~~~d~vi~t~~~~~~~~~ 520 (1255)
+++++|||+. .+|+ ...|.+.+ . .+|.+|+|++++++|.|
T Consensus 373 -----~~i~~v~g~~~~~r~k~~~~~~~~~~--~-~~d~vilt~~~~~~e~~ 416 (491)
T 2f00_A 373 -----KNLVMLFQPHRFTRTRDLYDDFANVL--T-QVDTLLMLEVYPAGEAP 416 (491)
T ss_dssp -----SEEEEEECCBCHHHHTTTHHHHHHHH--T-TSSEEEECCCBCSSSCC
T ss_pred -----CeEEEEECCCCCcchHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCC
Confidence 2789999963 3445 35666655 2 58999999988888764
No 21
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.8e-38 Score=377.75 Aligned_cols=260 Identities=16% Similarity=0.093 Sum_probs=188.9
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccc-eeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcc
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR-ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMP 186 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~r-ERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p 186 (1255)
+++|||||||||||||+|+++||+++|+++|+|++|++.+++ ++++++
T Consensus 114 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------- 162 (469)
T 1j6u_A 114 KEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------- 162 (469)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC-------------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC-------------------------------
Confidence 589999999999999999999999999999999999998887 777632
Q ss_pred hHHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeee
Q psy15432 187 AYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266 (1255)
Q Consensus 187 ~~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~ 266 (1255)
+.| +|+|+|+. |.++...+|+++|||||+.||+|+||+|+|+|+++|..++.....+|+
T Consensus 163 -----------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V~ 221 (469)
T 1j6u_A 163 -----------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVT 221 (469)
T ss_dssp -----------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEE
T ss_pred -----------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEEE
Confidence 135 89999875 667766689999999999999999997799999999988764335666
Q ss_pred ccCCCchHHHHHHHhhhccC---ceEEE----cCCc-ceeee--cC---cccccCCCchhHHhhHHHHHHHHHHHHHhhc
Q psy15432 267 SANQRGPCKQILLETSRALN---CVLLE----APSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFRMN 333 (1255)
Q Consensus 267 ~~~q~~e~~~vl~~~a~~~~---~~l~~----~~~~-~~~~~--~~---~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~ 333 (1255)
+. +++.+.++ .....+ ..+.. .... ..|.+ .+ ..+.++++|.||++|+++|++++..+
T Consensus 222 n~-dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----- 292 (469)
T 1j6u_A 222 FA-EDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL----- 292 (469)
T ss_dssp ET-TCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT-----
T ss_pred EC-CChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc-----
Confidence 65 55544321 000000 01110 0000 11211 11 14678999999999999999988764
Q ss_pred cchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHHhc
Q psy15432 334 KSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKA 413 (1255)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~ 413 (1255)
+++ ++.|++||++
T Consensus 293 ------------------------------------------------------------------gi~-~~~i~~~L~~ 305 (469)
T 1j6u_A 293 ------------------------------------------------------------------GYD-LAPVLEALEE 305 (469)
T ss_dssp ------------------------------------------------------------------TCC-HHHHHHHHHH
T ss_pred ------------------------------------------------------------------CCC-HHHHHHHHHh
Confidence 567 8999999999
Q ss_pred CC-CCCceEEE--E-ecCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEec---
Q psy15432 414 CV-WPGRVQVI--R-KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNV--- 486 (1255)
Q Consensus 414 ~~-~pGR~e~v--~-~~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~--- 486 (1255)
|+ ||||||++ . .+++.||+||||||++++++++++++.... +++++|||+
T Consensus 306 f~g~~gR~e~v~~~~~~g~~vi~D~aHnp~~~~a~l~al~~~~~~-----------------------~~i~~I~g~g~~ 362 (469)
T 1j6u_A 306 FRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFEN-----------------------EKIVVIFQPHRY 362 (469)
T ss_dssp CCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCSS-----------------------SEEEEEECCBC-
T ss_pred CCCCCCCcEEEcccccCCcEEEEeCCCCHHHHHHHHHHHHHhcCC-----------------------CcEEEEEcCCCC
Confidence 99 99999999 4 357899999999999999999999853321 278999984
Q ss_pred CCCCChhhhhHHhhccCCCcEEEEcCCCCCCCCC
Q psy15432 487 TGERDPTKLLSPLLQSNQFEYILVTPNILTNESS 520 (1255)
Q Consensus 487 ~~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~ 520 (1255)
.+++|....+..++ ..+|.+|+|++++++|.|
T Consensus 363 ~r~~~~~~~l~~~~--~~~d~vil~~~~~~~e~p 394 (469)
T 1j6u_A 363 SRLEREDGNFAKAL--QLADEVVVTEVYDAFEEK 394 (469)
T ss_dssp -------CHHHHHH--TTSSEEEECCCBC-----
T ss_pred CccHHHHHHHHHHH--hcCCEEEEcccCCCCCCc
Confidence 34455344444441 358999999888877664
No 22
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=3.3e-38 Score=375.18 Aligned_cols=246 Identities=14% Similarity=0.151 Sum_probs=192.5
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++||||||||||||++|+++||+++|++++++++- |.|+++.
T Consensus 104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~~------------------------- 146 (439)
T 2x5o_A 104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALML------------------------- 146 (439)
T ss_dssp SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHHH-------------------------
Confidence 589999999999999999999999999999988761 4444310
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCceeeec
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 267 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~~~v~~ 267 (1255)
...+.|++|+|+|+ +++|.||.+ +|+++|||||+.||+|+||.|+|+|+++|++||+++.++|++
T Consensus 147 -------------~~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~n 211 (439)
T 2x5o_A 147 -------------LDDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 211 (439)
T ss_dssp -------------CCTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEE
T ss_pred -------------hCCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEEe
Confidence 12346999999999 789999987 799999999999999999779999999999999999899998
Q ss_pred cCCCchHHHHHHHhhhccCceEEEcCCc----c-------eeee-cCc----ccccCCCchhHHhhHHHHHHHHHHHHHh
Q psy15432 268 ANQRGPCKQILLETSRALNCVLLEAPSI----L-------NYRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 331 (1255)
Q Consensus 268 ~~q~~e~~~vl~~~a~~~~~~l~~~~~~----~-------~~~~-~~~----~i~l~l~G~~q~~Na~lAia~a~~~l~~ 331 (1255)
. +++.+..++.. +++++.++.. . .+.+ .+. .+.++++|.||++|+++|++++..+
T Consensus 212 ~-dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l--- 282 (439)
T 2x5o_A 212 A-DDALTMPIRGA-----DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA--- 282 (439)
T ss_dssp T-TCGGGSCSCCC-----SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT---
T ss_pred C-CCHHHHHHhhc-----CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc---
Confidence 7 66654433221 1222222110 0 1112 111 2578999999999999999988764
Q ss_pred hccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHHH
Q psy15432 332 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGI 411 (1255)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL 411 (1255)
+++ ++.|.+||
T Consensus 283 --------------------------------------------------------------------gi~-~~~i~~~L 293 (439)
T 2x5o_A 283 --------------------------------------------------------------------GLP-RASSLKAL 293 (439)
T ss_dssp --------------------------------------------------------------------TCC-HHHHHHHH
T ss_pred --------------------------------------------------------------------CCC-HHHHHHHH
Confidence 667 99999999
Q ss_pred hcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecCC
Q psy15432 412 KACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTG 488 (1255)
Q Consensus 412 ~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~~ 488 (1255)
++|+ ||||||++.. +++.||+| |||||+|+++++++++. . +++++|||.+
T Consensus 294 ~~f~~~~gR~e~~~~~~~~~vi~Ds~a~np~a~~~al~~l~~---~-----------------------~~~i~v~g~~- 346 (439)
T 2x5o_A 294 TTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV---D-----------------------GTLHLLLGGD- 346 (439)
T ss_dssp HHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC---S-----------------------SCEEEEEESB-
T ss_pred HhCCCCCCceEEEEEECCEEEEEeCCCCCHHHHHHHHHhCCc---C-----------------------CCEEEEEcCC-
Confidence 9998 9999999975 56788999 99999999999876632 1 2789999974
Q ss_pred CC--ChhhhhHHhhccCCCcEEEEcC
Q psy15432 489 ER--DPTKLLSPLLQSNQFEYILVTP 512 (1255)
Q Consensus 489 dr--D~~~ll~~L~~~~~~d~vi~t~ 512 (1255)
+| |.+.+++.+ ...+|.+|++.
T Consensus 347 ~k~~~~~~~~~~l--~~~~d~vi~~g 370 (439)
T 2x5o_A 347 GKSADFSPLARYL--NGDNVRLYCFG 370 (439)
T ss_dssp CTTCCCGGGGGGS--CSSSEEEEEES
T ss_pred CCCCCHHHHHHHH--HhhCCEEEEEC
Confidence 56 778888777 34588888874
No 23
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=2.7e-38 Score=375.89 Aligned_cols=294 Identities=14% Similarity=0.109 Sum_probs=223.5
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|||||||||||||+|+++||+++|++++++++. |.|++..
T Consensus 104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~~------------------------- 146 (439)
T 2x5o_A 104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALML------------------------- 146 (439)
T ss_dssp SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHHH-------------------------
Confidence 589999999999999999999999999999988762 6664321
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEEEc
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTS 879 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av~~ 879 (1255)
+..+.|++|+|+|+ +++|.||.+ +|+++|||||+.||+++||+|+|+|+++|++||++++++|++
T Consensus 147 -------------~~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~n 211 (439)
T 2x5o_A 147 -------------LDDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 211 (439)
T ss_dssp -------------CCTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEE
T ss_pred -------------hCCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEEe
Confidence 12346999999999 779999987 799999999999999999779999999999999999999999
Q ss_pred cCCCChhHHHHHHHhhhcCCeEEEcCCcc-----------ceec-cCC----ccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 880 ANQRGPCKQILLETSRALNCVLLEAPSIL-----------NYRW-RGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 880 ~~qd~~~~~vl~~~A~~~~~~l~~~~~~~-----------~~~~-~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
. +++...+++.. +++++.++... .+.+ .+. .+.++++|.||++|+++|++++..
T Consensus 212 ~-dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~---- 281 (439)
T 2x5o_A 212 A-DDALTMPIRGA-----DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADA---- 281 (439)
T ss_dssp T-TCGGGSCSCCC-----SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHH----
T ss_pred C-CCHHHHHHhhc-----CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHH----
Confidence 8 55544333221 23444443210 0111 111 257899999999999999998876
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +.+.+|
T Consensus 282 ---------------------------------------------------------------------lgi~~~~i~~~ 292 (439)
T 2x5o_A 282 ---------------------------------------------------------------------AGLPRASSLKA 292 (439)
T ss_dssp ---------------------------------------------------------------------TTCCHHHHHHH
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 4666 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCCC--Chhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGER--DPTKLL 1097 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~dr--D~~~ll 1097 (1255)
|++|+ ||||||++.. ++++||+| |||||+|+++++++++. .+++++|||.+ +| |.+.++
T Consensus 293 L~~f~~~~gR~e~~~~~~~~~vi~Ds~a~np~a~~~al~~l~~---------------~~~~i~v~g~~-~k~~~~~~~~ 356 (439)
T 2x5o_A 293 LTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHV---------------DGTLHLLLGGD-GKSADFSPLA 356 (439)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHTTCCC---------------SSCEEEEEESB-CTTCCCGGGG
T ss_pred HHhCCCCCCceEEEEEECCEEEEEeCCCCCHHHHHHHHHhCCc---------------CCCEEEEEcCC-CCCCCHHHHH
Confidence 99998 9999999975 46678889 99999999999987642 14689999974 56 778888
Q ss_pred hhhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEeec-CCCCCCcc
Q psy15432 1098 SPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKRN-QSSLPMGP 1171 (1255)
Q Consensus 1098 ~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~ 1171 (1255)
+.+ . ..+|.+++++........ . ......+..+.++.++.+.....+.+++|+.+ +.|+.|-+
T Consensus 357 ~~l-~-~~~d~vi~~g~~~~~~~~-~--------~~~~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~ 420 (439)
T 2x5o_A 357 RYL-N-GDNVRLYCFGRDGAQLAA-L--------RPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420 (439)
T ss_dssp GGS-C-SSSEEEEEESTTHHHHHT-T--------SGGGEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSS
T ss_pred HHH-H-hhCCEEEEECCCHHHHHH-H--------hcCCccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhh
Confidence 777 3 458988888754332211 0 01012234688999999988888888888865 57777763
No 24
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=8.5e-38 Score=375.14 Aligned_cols=304 Identities=14% Similarity=0.079 Sum_probs=221.3
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+.....
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 162 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLD------PT-------FVNGGLVKSAGKNA---------------------- 162 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCccccccccc----------------------
Confidence 48999999999999999999999999986 33 24555554322210
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~a 876 (1255)
...++|++|+|+| ++|.++...+|+++|||||+.||+++||+|+|+|+++|+.|+ ++++++
T Consensus 163 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 163 -------------HLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 1247899999996 677888877899999999999999999779999999998876 577889
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCc----------------cceec--cC---CccccCCCchhHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSI----------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----------------~~~~~--~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
|++. +++...+++... +++++.++.. ..+.+ .+ ..+.++++|.||++|+++|++
T Consensus 227 V~n~-dd~~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia 301 (475)
T 1p3d_A 227 VMCA-DDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALA 301 (475)
T ss_dssp EEET-TCHHHHHHHHHH----CSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHHhc----CCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHH
Confidence 9997 555555544432 2344443210 01111 11 146789999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
++.. +|+
T Consensus 302 ~~~~-------------------------------------------------------------------------lgi 308 (475)
T 1p3d_A 302 VAKE-------------------------------------------------------------------------EGI 308 (475)
T ss_dssp HHHH-------------------------------------------------------------------------TTC
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 8876 466
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee-----cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecC
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK-----NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVT 1088 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~-----~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~ 1088 (1255)
+ +.+.+||++|+ ||||||++.. ++++||+||||||+++++++++++.... .+++++|||++
T Consensus 309 ~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~DyaHnp~~~~a~l~al~~~~~------------~~~i~~v~g~~ 376 (475)
T 1p3d_A 309 ANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWG------------DKRIVMIFQPH 376 (475)
T ss_dssp CHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHC------------SSCEEEEECCB
T ss_pred CHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEeCCCCHHHHHHHHHHHHhhcC------------CCeEEEEECCC
Confidence 6 67999999999 9999999986 2678999999999999999999987531 14688999974
Q ss_pred C-CC--C-hhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcc---ccc-c--cccccCCHHHHHHHHHHHcCCCce
Q psy15432 1089 G-ER--D-PTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDED---WKS-T--VQSINISLAIQLAYLWMFRMNKSA 1158 (1255)
Q Consensus 1089 ~-dr--D-~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~---~~~-d--~~~~~~~~~~~~~~~~~~~~~~~~ 1158 (1255)
+ +| + ...|.+.+ . .+|.+++|+.++..+.+..+...... +.. . ...+..+.++.++.+.....+.++
T Consensus 377 ~~~r~~~~~~~~~~~~--~-~~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~ 453 (475)
T 1p3d_A 377 RYSRTRDLFDDFVQVL--S-QVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDL 453 (475)
T ss_dssp CHHHHHHTHHHHHHHH--T-TSSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCE
T ss_pred CCccHHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCCCceEEECCHHHHHHHHHHhCCCCCE
Confidence 3 33 3 24444544 3 48999999877665432211111111 111 0 112335888899999998899999
Q ss_pred EEeecCCCC
Q psy15432 1159 ELKRNQSSL 1167 (1255)
Q Consensus 1159 ~l~~~~~~~ 1167 (1255)
+|++|++|+
T Consensus 454 VLv~G~Gs~ 462 (475)
T 1p3d_A 454 ILAQGAGSV 462 (475)
T ss_dssp EEEECSSTH
T ss_pred EEEECCCCH
Confidence 999998875
No 25
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.3e-37 Score=374.98 Aligned_cols=313 Identities=15% Similarity=0.094 Sum_probs=222.8
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCc
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 799 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt 799 (1255)
.++|||||||||||||+|+++||+++|++ || +.++|...+.....
T Consensus 119 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~~~---------------------- 163 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLD------PT-------FVNGGLVKAAGVHA---------------------- 163 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTEEE----------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCeeccccccc----------------------
Confidence 48999999999999999999999999986 43 24555554322200
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccc---cCCceE
Q psy15432 800 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM---KPNCIA 876 (1255)
Q Consensus 800 ~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~---K~g~~a 876 (1255)
...++|++|+|+| ++|.++...+|+++|||||+.||+++||+|+|+|+++|++|+ ++++++
T Consensus 164 -------------~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 164 -------------RLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp -------------ECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------cCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 1247899999996 678888877899999999999999999779999999999887 577889
Q ss_pred EEccCCCChhHHHHHHHhhhcCCeEEEcCCc----------------cceec--cC---CccccCCCchhHHHHHHHHHH
Q psy15432 877 VTSANQRGPCKQILLETSRALNCVLLEAPSI----------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQ 935 (1255)
Q Consensus 877 v~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----------------~~~~~--~~---~~v~l~L~G~hq~~Na~lAia 935 (1255)
|++. +++...+++. ..+++++.++.. ..+.+ .+ ..+.++++|.||++|+++|++
T Consensus 228 V~n~-dd~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia 302 (491)
T 2f00_A 228 VMCV-DDPVIRELLP----RVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVA 302 (491)
T ss_dssp EEET-TSHHHHHHGG----GCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEC-CCHHHHHHHH----hcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHH
Confidence 9987 5544443332 223455444310 01211 11 146789999999999999999
Q ss_pred HHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCC
Q psy15432 936 LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEI 1015 (1255)
Q Consensus 936 la~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i 1015 (1255)
++.. +|+
T Consensus 303 ~a~~-------------------------------------------------------------------------lgi 309 (491)
T 2f00_A 303 VATE-------------------------------------------------------------------------EGI 309 (491)
T ss_dssp HHHH-------------------------------------------------------------------------HTC
T ss_pred HHHH-------------------------------------------------------------------------cCC
Confidence 8876 356
Q ss_pred C-HHHHHHHhcCC-CCCcEEEEee---------cC-cEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEE
Q psy15432 1016 D-PKTYRGIKACV-WPGRVQVIRK---------NN-FKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRIL 1083 (1255)
Q Consensus 1016 ~-~~i~~gL~~~~-~pGR~E~v~~---------~~-~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vl 1083 (1255)
+ +.|.+||++|+ ||||||++.. .+ ++||+||||||+++++++++++.... .+++++
T Consensus 310 ~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~DyaHnp~~~~a~l~al~~~~~------------~~~i~~ 377 (491)
T 2f00_A 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWP------------DKNLVM 377 (491)
T ss_dssp CHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTCC------------SSEEEE
T ss_pred CHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEeCCCCHHHHHHHHHHHHhhcC------------CCeEEE
Confidence 6 67999999999 9999999986 26 78999999999999999999986421 146789
Q ss_pred EEecC---CCCCh-hhhhhhhhcCCCCcEEEEcCCCCcccccccCCC---CCccccc-c--cccccCCHHHHHHHHHHHc
Q psy15432 1084 VFNVT---GERDP-TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQP---LDEDWKS-T--VQSINISLAIQLAYLWMFR 1153 (1255)
Q Consensus 1084 Vfg~~---~drD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~---~~~~~~~-d--~~~~~~~~~~~~~~~~~~~ 1153 (1255)
|||++ .+++. ..|.+.+ . .+|.+++|+.++..+.+..+.. +...+.. . ...+..+.++.++.+....
T Consensus 378 v~g~~~~~r~k~~~~~~~~~~--~-~~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~ai~~a~~~a 454 (491)
T 2f00_A 378 LFQPHRFTRTRDLYDDFANVL--T-QVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVL 454 (491)
T ss_dssp EECCBCHHHHTTTHHHHHHHH--T-TSSEEEECCCBCSSSCCCTTSSHHHHTTC-------CCEECCCSSCCHHHHGGGC
T ss_pred EECCCCCcchHHHHHHHHHHH--H-hCCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCCCceEEeCCHHHHHHHHHHhC
Confidence 99963 33453 4555545 3 4899999987765543211111 0111111 0 1122357777888888888
Q ss_pred CCCceEEeecCCCCCCccccccccc
Q psy15432 1154 MNKSAELKRNQSSLPMGPHFEIDPK 1178 (1255)
Q Consensus 1154 ~~~~~~l~~~~~~~~~~~~~~~~~~ 1178 (1255)
.+.+++|++|+++ ++.+-+.+..
T Consensus 455 ~~gd~VLv~gaGs--l~~v~~~l~~ 477 (491)
T 2f00_A 455 TGNDLILVQGAGN--IGKIARSLAE 477 (491)
T ss_dssp CSEEEEEEECSTT--HHHHHHHHHH
T ss_pred CCCCEEEEECCCC--HHHHHHHHHH
Confidence 8889999999887 3444444433
No 26
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=5.1e-37 Score=367.96 Aligned_cols=313 Identities=15% Similarity=0.051 Sum_probs=211.9
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCccccccc-ceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCC
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR-ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDM 797 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~-ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~ 797 (1255)
++++|||||||||||||+|+++||+++|+++|+|++|++.+++ ++++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 3589999999999999999999999999999999999988887 777531
Q ss_pred CcHHHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccCCceEE
Q psy15432 798 PAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877 (1255)
Q Consensus 798 pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~g~~av 877 (1255)
+.| +|+|+|+. |.++...+|+++|||||+.||+++||+|+|+|+++|..+++....+|
T Consensus 163 ------------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V 220 (469)
T 1j6u_A 163 ------------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVV 220 (469)
T ss_dssp ------------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEE
T ss_pred ------------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEE
Confidence 236 89999765 66776668999999999999999999779999999998876433677
Q ss_pred EccCCCChhHHHHHHHhhhcC---CeEEE----cCCc-cceec--cC---CccccCCCchhHHHHHHHHHHHHHHHHHhh
Q psy15432 878 TSANQRGPCKQILLETSRALN---CVLLE----APSI-LNYRW--RG---QPLDEDWKSTVQSINISLAIQLAYLWMFRM 944 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~---~~l~~----~~~~-~~~~~--~~---~~v~l~L~G~hq~~Na~lAiala~~~l~~~ 944 (1255)
++. +++...++ .....+ +.+.. .... ..+.+ .+ ..+.++++|.||++|+++|++++..
T Consensus 221 ~n~-dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~----- 291 (469)
T 1j6u_A 221 TFA-EDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDS----- 291 (469)
T ss_dssp EET-TCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHH-----
T ss_pred EEC-CChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHH-----
Confidence 776 45543321 000000 11111 0000 11111 11 1467899999999999999998876
Q ss_pred cchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHH
Q psy15432 945 NKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGI 1023 (1255)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL 1023 (1255)
+|++ +.+.+||
T Consensus 292 --------------------------------------------------------------------lgi~~~~i~~~L 303 (469)
T 1j6u_A 292 --------------------------------------------------------------------LGYDLAPVLEAL 303 (469)
T ss_dssp --------------------------------------------------------------------TTCCHHHHHHHH
T ss_pred --------------------------------------------------------------------cCCCHHHHHHHH
Confidence 4566 6799999
Q ss_pred hcCC-CCCcEEEE--e-ecCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEec---CCCCChhhh
Q psy15432 1024 KACV-WPGRVQVI--R-KNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNV---TGERDPTKL 1096 (1255)
Q Consensus 1024 ~~~~-~pGR~E~v--~-~~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~---~~drD~~~l 1096 (1255)
++|+ ||||||++ . .++++||+||||||++++++++++++... .+++++|||+ .+++|....
T Consensus 304 ~~f~g~~gR~e~v~~~~~~g~~vi~D~aHnp~~~~a~l~al~~~~~------------~~~i~~I~g~g~~~r~~~~~~~ 371 (469)
T 1j6u_A 304 EEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFE------------NEKIVVIFQPHRYSRLEREDGN 371 (469)
T ss_dssp HHCCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHCS------------SSEEEEEECCBC--------CH
T ss_pred HhCCCCCCCcEEEcccccCCcEEEEeCCCCHHHHHHHHHHHHHhcC------------CCcEEEEEcCCCCCccHHHHHH
Confidence 9999 99999999 4 35788999999999999999999985321 1467899974 344554444
Q ss_pred hhhhhcCCCCcEEEEcCCCCcccccccCCCCCcc---cccc--cccccCCHHHHHHHHHHHcCCCceEEeecCCCCCC--
Q psy15432 1097 LSPLLQSNQFEYILVTPNILTNEIRWRGQPLDED---WKST--VQSINISLAIQLAYLWMFRMNKSAELKRNQSSLPM-- 1169 (1255)
Q Consensus 1097 l~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~---~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 1169 (1255)
+..+ .. .+|.+++++..+..+.+..+.+.... +... ......+.++.++.+ ...+.+++|++|++|+.+
T Consensus 372 l~~~-~~-~~d~vil~~~~~~~e~p~~g~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~--~a~~gD~VLv~g~Gs~~~~~ 447 (469)
T 1j6u_A 372 FAKA-LQ-LADEVVVTEVYDAFEEKKNGISGKMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGDIIYSS 447 (469)
T ss_dssp HHHH-HT-TSSEEEECCCBC---------CHHHHHHHHHHTTCCEEECCSGGGHHHHC--CCCSSEEEEEECSSTHHHHH
T ss_pred HHHH-Hh-cCCEEEEcccCCCCCCcccCcCHHHHHHHHHhcCCcEEEECCHHHHHHHh--hCCCCCEEEEECCCchhHHH
Confidence 4444 13 48999999876544322111111111 1110 011223566655544 556678999999988766
Q ss_pred ccccccc
Q psy15432 1170 GPHFEID 1176 (1255)
Q Consensus 1170 ~~~~~~~ 1176 (1255)
+.+.+.+
T Consensus 448 ~~l~~~l 454 (469)
T 1j6u_A 448 RRFVERY 454 (469)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 27
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=3.5e-36 Score=362.86 Aligned_cols=318 Identities=14% Similarity=0.118 Sum_probs=220.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcchH
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 188 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~~ 188 (1255)
++|+||||||||||+.|+++||+++|++....+...+..+ |.+.
T Consensus 123 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~-------g~~~----------------------------- 166 (494)
T 4hv4_A 123 HGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA-------GTHA----------------------------- 166 (494)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT-------TEEE-----------------------------
T ss_pred CEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc-------cccc-----------------------------
Confidence 6999999999999999999999999986432221110000 1000
Q ss_pred HHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCC---Cceee
Q psy15432 189 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 265 (1255)
Q Consensus 189 Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~---g~~~v 265 (1255)
.-.+.|++|+|+|+++ .+....+|+++|||||+.||+|+||.|+|+|+.+|++|++. +..+|
T Consensus 167 ------------~~~~~d~~VlE~~e~~---~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V 231 (494)
T 4hv4_A 167 ------------RLGSSRYLIAEADESD---ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 231 (494)
T ss_dssp ------------ECCSSSEEEEECCCGG---GGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCcEEEEEccccc---cccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1135799999999654 44455589999999999999999966999999999999964 56778
Q ss_pred eccCCCchHHHHHHHhhhccCceEEEcCCcce--------------eeec--C---cccccCCCchhHHhhHHHHHHHHH
Q psy15432 266 TSANQRGPCKQILLETSRALNCVLLEAPSILN--------------YRWR--G---QPLDEDWKSTVQSINISLAIQLAY 326 (1255)
Q Consensus 266 ~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~--------------~~~~--~---~~i~l~l~G~~q~~Na~lAia~a~ 326 (1255)
++. +++....++.+. . ..+..|......+ |.+. + ..+.++++|.||++|+++|++++.
T Consensus 232 ~n~-dd~~~~~~~~~~-~-~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~ 308 (494)
T 4hv4_A 232 MCI-DDPVVRELLPRV-G-RHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVAT 308 (494)
T ss_dssp EET-TSHHHHHHGGGC-C-SCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHH
T ss_pred EEC-CCHHHHHHHHhc-C-CCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 877 565555443322 1 1112222211111 1111 1 236789999999999999999987
Q ss_pred HHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHH
Q psy15432 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPK 406 (1255)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~ 406 (1255)
.+ +++ ++.
T Consensus 309 ~l-----------------------------------------------------------------------gi~-~~~ 316 (494)
T 4hv4_A 309 EE-----------------------------------------------------------------------GIE-DED 316 (494)
T ss_dssp HH-----------------------------------------------------------------------TCC-HHH
T ss_pred Hc-----------------------------------------------------------------------CCC-HHH
Confidence 76 667 999
Q ss_pred HHHHHhcCC-CCCceEEEEe----------cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCC
Q psy15432 407 TYRGIKACV-WPGRVQVIRK----------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSS 475 (1255)
Q Consensus 407 i~~gL~~~~-~pGR~e~v~~----------~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1255)
|.+||++|+ ||||||++.. +++.||+||||||++++++++++++..++
T Consensus 317 i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~~--------------------- 375 (494)
T 4hv4_A 317 ILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPD--------------------- 375 (494)
T ss_dssp HHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCTT---------------------
T ss_pred HHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcCC---------------------
Confidence 999999999 9999999976 36899999999999999999999875432
Q ss_pred CCccEEEEEecCCCCChhhhhHHhh-ccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCC
Q psy15432 476 NVIQRILVFNVTGERDPTKLLSPLL-QSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRP 554 (1255)
Q Consensus 476 ~~~~~ilVfg~~~drD~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1255)
+|+++|||+.+++....+...+. .-..+|.+|+|+.++..|.|. ..
T Consensus 376 --~rii~V~g~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~---~g---------------------------- 422 (494)
T 4hv4_A 376 --KRIVMLFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPI---PG---------------------------- 422 (494)
T ss_dssp --SEEEEEECCBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCC---TT----------------------------
T ss_pred --CeEEEEEcCCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCc---CC----------------------------
Confidence 27899998654221112222221 114689999999888877641 00
Q ss_pred CCCCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceE
Q psy15432 555 NVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHI 634 (1255)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~v 634 (1255)
.+.+.|++....... ..+..++|+++|++.+.... .+++.|
T Consensus 423 -------------------------------------~~~~~l~~~~~~~g~-~~~~~~~~~~eAv~~a~~~a-~~gDvV 463 (494)
T 4hv4_A 423 -------------------------------------ADSRALCRTIRNRGK-LDPILVPDSESAPEMLAQIL-NGEDLI 463 (494)
T ss_dssp -------------------------------------CSHHHHHHHHHTTTS-CCCEEECCTTTHHHHHHHHC-CTTEEE
T ss_pred -------------------------------------ccHHHHHHHHHhhCC-CCeEEeCCHHHHHHHHHHhC-CCCCEE
Confidence 001224444433221 24678899999999999886 567889
Q ss_pred EEec--ccccccc
Q psy15432 635 LVTG--SLHLVGA 645 (1255)
Q Consensus 635 lvtG--SlhLVGg 645 (1255)
|++| |++.++.
T Consensus 464 L~~GaG~~~~~~~ 476 (494)
T 4hv4_A 464 LVQGAGNIGKIAR 476 (494)
T ss_dssp EEECSSTHHHHHH
T ss_pred EEECCCCHHHHHH
Confidence 9988 4444443
No 28
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=5.4e-36 Score=357.34 Aligned_cols=298 Identities=15% Similarity=0.136 Sum_probs=219.2
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+++|+++.+.++. |.|++...
T Consensus 113 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~~~------------------------- 155 (451)
T 3lk7_A 113 QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASEVV------------------------- 155 (451)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHHHT-------------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhhhh-------------------------
Confidence 89999999999999999999999999988654432 44432110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~av 877 (1255)
....++|++|+|+|+++ +|.+|.+ +|+++|||||+.||+++|| |+|+|+++|++||+. ++.+|
T Consensus 156 -----------~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~~V 221 (451)
T 3lk7_A 156 -----------QAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFLV 221 (451)
T ss_dssp -----------TTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSEEE
T ss_pred -----------hcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 01246899999999976 5788887 7999999999999999999 999999999999975 45688
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCcc----------ceeccCC----ccccCCCchhHHHHHHHHHHHHHHHHHh
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSIL----------NYRWRGQ----PLDEDWKSTVQSINISLAIQLAYLWMFR 943 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~----------~~~~~~~----~v~l~L~G~hq~~Na~lAiala~~~l~~ 943 (1255)
++. +|+...+ .+++.+++++.++... .+.+.+. .+.++++|.||++|+++|++++..
T Consensus 222 ~n~-dd~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~---- 292 (451)
T 3lk7_A 222 LNF-NQGISKE----LAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKL---- 292 (451)
T ss_dssp EET-TSHHHHH----HHTTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHH----
T ss_pred EEC-CcHHHHH----HHhhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHH----
Confidence 887 4444333 2333455655553211 1112221 357899999999999999998876
Q ss_pred hcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHH
Q psy15432 944 MNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRG 1022 (1255)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~g 1022 (1255)
+|++ +.+.+|
T Consensus 293 ---------------------------------------------------------------------lgi~~~~i~~~ 303 (451)
T 3lk7_A 293 ---------------------------------------------------------------------AGISNQVIRET 303 (451)
T ss_dssp ---------------------------------------------------------------------HTCCHHHHHHH
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 3566 679999
Q ss_pred HhcCC-CCCcEEEEee-cCcEEEEE-cCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCC-CCChhhhhh
Q psy15432 1023 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTG-ERDPTKLLS 1098 (1255)
Q Consensus 1023 L~~~~-~pGR~E~v~~-~~~~vilD-gAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~-drD~~~ll~ 1098 (1255)
|++|+ ||||||++.. ++++||+| |||||+|+.++++.+.. +++++|+|.+. ++|.+.+++
T Consensus 304 L~~f~~~~gR~e~v~~~~g~~vi~D~~a~np~a~~~al~~~~~----------------~rii~I~g~~~r~~d~~~l~~ 367 (451)
T 3lk7_A 304 LSNFGGVKHRLQSLGKVHGISFYNDSKSTNILATQKALSGFDN----------------TKVILIAGGLDRGNEFDELIP 367 (451)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHHTSCG----------------GGEEEEECCSCCSCCCGGGHH
T ss_pred HHhCCCCCCcEEEEeeeCCcEEEEeCCCCCHHHHHHHHHhCCC----------------CCEEEEECCCCCCCCHHHHHH
Confidence 99998 9999999975 57789999 79999999998875421 35788998665 688889888
Q ss_pred hhhcCCCCcEEEEcCCCCcccccccCCCCCcccccccccccCCHHHHHHHHHHHcCCCceEEee-cCCCCCCccc
Q psy15432 1099 PLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKR-NQSSLPMGPH 1172 (1255)
Q Consensus 1099 ~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 1172 (1255)
.+ . . +|.+++++........... . .+....+..+.++.++.+.....+.+++|+. ++.|++|.+-
T Consensus 368 ~l-~-~-~d~vi~~G~~~~~l~~~~~-----~-~g~~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~ 433 (451)
T 3lk7_A 368 DI-T-G-LKHMVVLGESASRVKRAAQ-----K-AGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKN 433 (451)
T ss_dssp HH-T-T-CSEEEECSTTHHHHHHHHH-----H-TTCCEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSS
T ss_pred HH-H-h-cCEEEEECCCHHHHHHHHH-----h-cCCceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhC
Confidence 88 3 3 8999988654322111100 0 0011234468899999998888777666665 6689888743
No 29
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.7e-34 Score=350.58 Aligned_cols=279 Identities=15% Similarity=0.114 Sum_probs=184.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+++||+++|++++++. +|.+.. .+++-. +..-+...........+
T Consensus 122 ~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~i-------------Gg~~~~---~~T~~n-ln~~ig~~~~~~~~~~~ 184 (524)
T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLV---NTTDTN-LQQVFAHSSYLGTEKDD 184 (524)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCC---CSSCHH-HHHHTTSSEECCCCCCS
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEE-------------CCEecc---ccCchh-hhhhhhhHHhhCCCccc
Confidence 4799999999999999999999999999987532 222210 111100 00000000000000000
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccC--Ccccc----ccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC--
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDN----TNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK-- 259 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~D~----tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k-- 259 (1255)
+ ..+.++|++|+|+|+. +..+. ..+ +|+++|||||+.||+|+|| |+|+|+.+|+.|++
T Consensus 185 ~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~iaViTNI~~DHLd~~g-s~e~y~~aK~~i~~~~ 250 (524)
T 3hn7_A 185 S-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHY--RPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMI 250 (524)
T ss_dssp S-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHC--CCSEEEECCCCCC-------CHHHHHHHHHHHHTTS
T ss_pred c-----------cccccCcEEEEECCCCCccccccccceeee--cCCEEEEcCCChHHccccC-CHHHHHHHHHHHHHhC
Confidence 0 0134578999999985 32222 223 8999999999999999999 99999999999997
Q ss_pred -CCceeeeccCCCchHHHHHHHhhhccCceEEEcC--------------------Ccce------------ee--ecC--
Q psy15432 260 -PNCIAVTSANQRGPCKQILLETSRALNCVLLEAP--------------------SILN------------YR--WRG-- 302 (1255)
Q Consensus 260 -~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~--------------------~~~~------------~~--~~~-- 302 (1255)
++..+|++. +|+.....+.+.+. .....|... ...+ |. ..+
T Consensus 251 ~~~g~~VlN~-DD~~~~~~~~~~~~-~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l~~~~~~ 328 (524)
T 3hn7_A 251 PSTGKIIMPA-ATISLEDTLAKGVW-TPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNK 328 (524)
T ss_dssp CTTSEEEEES-SCHHHHHHHHTCCC-SCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEE
T ss_pred CCCCEEEEEC-CCHHHHHHHHhccC-CcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEEEECCcc
Confidence 456777776 55544443332211 111122211 0111 11 111
Q ss_pred ---cccccCCCchhHHhhHHHHHHHHHHHHHhhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCcccc
Q psy15432 303 ---QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFS 379 (1255)
Q Consensus 303 ---~~i~l~l~G~~q~~Na~lAia~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1255)
..+.++++|.||++|+++|++++..+
T Consensus 329 ~~~~~~~l~l~G~hn~~NalaA~a~~~~l--------------------------------------------------- 357 (524)
T 3hn7_A 329 EATALVNWSMSGLHNVNNALVAIAAAYNI--------------------------------------------------- 357 (524)
T ss_dssp EEEEEEECSCCSHHHHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred ceeEEEEeCCCcHHHHHhHHHHHHHHHHc---------------------------------------------------
Confidence 24678999999999999999988764
Q ss_pred CCCCCCCCccccccccCCCCCCCChHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccc
Q psy15432 380 ETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEAS 457 (1255)
Q Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~ 457 (1255)
+++ .+.|.++|++|+ ||||||++.. +++.||+|+||||++++++++++++....
T Consensus 358 --------------------gi~-~~~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D~ahnp~~~~a~l~~l~~~~~~--- 413 (524)
T 3hn7_A 358 --------------------GVS-VKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLAD--- 413 (524)
T ss_dssp --------------------TCC-HHHHHHHHHTCCCBTTSSEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTT---
T ss_pred --------------------CCC-HHHHHHHHHhCCCCCceEEEEEecCCcEEEEECCCCHHHHHHHHHHHHhhcCC---
Confidence 667 899999999999 9999999975 67899999999999999999999876432
Q ss_pred cCccCCCCCCCCCccCCCCCccEEEEEecC----CCCChhhhhHHhhccCCCcEEEEcCCCCC
Q psy15432 458 SSRSVSSCPLDPTQSKSSNVIQRILVFNVT----GERDPTKLLSPLLQSNQFEYILVTPNILT 516 (1255)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~----~drD~~~ll~~L~~~~~~d~vi~t~~~~~ 516 (1255)
+|+++|||++ .++|..+++..+ ...+|.+|+++++++
T Consensus 414 --------------------~r~i~V~g~~~~~~~~g~~~~~~~~~--~~~aD~vil~~~~~r 454 (524)
T 3hn7_A 414 --------------------RRLWAIIEPRSNTMKMGIHQDSLAQS--ATLADHTLWYEPTGL 454 (524)
T ss_dssp --------------------SCEEEEEECCCCSSCCSCCTTHHHHH--TTTSSEEEEECCTTC
T ss_pred --------------------CCEEEEECCCCcchhhhhhHHHHHHH--HhcCCEEEEcCCCCC
Confidence 2789999984 566777777766 356999999875543
No 30
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=2.5e-35 Score=355.42 Aligned_cols=306 Identities=13% Similarity=0.087 Sum_probs=212.7
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcH
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAY 800 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~ 800 (1255)
++|+||||||||||++|+++||+++|++........+ + .+ |.+.
T Consensus 123 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~---~-~~---g~~~----------------------------- 166 (494)
T 4hv4_A 123 HGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLV---K-AA---GTHA----------------------------- 166 (494)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEE---T-TT---TEEE-----------------------------
T ss_pred CEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCcc---c-cc---cccc-----------------------------
Confidence 6999999999999999999999999986432211110 0 01 1110
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEecccCCccccccccCCCcEEEEcCCCchhhhhcCCCHHHHHHHHhccccC---CceEE
Q psy15432 801 FKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKP---NCIAV 877 (1255)
Q Consensus 801 Fe~lT~mAf~~F~~~~vD~aVlEVG~GGr~D~TNvi~~P~VavITnIg~DHl~~LG~TleeIA~~KagI~K~---g~~av 877 (1255)
.-.++|++|+|+|+++ .++...+|+++|||||+.||+++||+|+|+|+++|++|++. ++.+|
T Consensus 167 ------------~~~~~d~~VlE~~e~~---~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V 231 (494)
T 4hv4_A 167 ------------RLGSSRYLIAEADESD---ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 231 (494)
T ss_dssp ------------ECCSSSEEEEECCCGG---GGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCcEEEEEccccc---cccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 1135799999998664 34445589999999999999999977999999999999964 67888
Q ss_pred EccCCCChhHHHHHHHhhhcCCeEEEcCCc----------------cceec--cC---CccccCCCchhHHHHHHHHHHH
Q psy15432 878 TSANQRGPCKQILLETSRALNCVLLEAPSI----------------LNYRW--RG---QPLDEDWKSTVQSINISLAIQL 936 (1255)
Q Consensus 878 ~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~----------------~~~~~--~~---~~v~l~L~G~hq~~Na~lAial 936 (1255)
++. +|+....++ .+..++++.++.. ..|.+ .+ ..+.++++|.||++|+++|+++
T Consensus 232 ~n~-dd~~~~~~~----~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~ 306 (494)
T 4hv4_A 232 MCI-DDPVVRELL----PRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAV 306 (494)
T ss_dssp EET-TSHHHHHHG----GGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEC-CCHHHHHHH----HhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 887 554444332 2223444433210 01111 11 2367899999999999999998
Q ss_pred HHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCCCCCCccccCCCCCCCCcccccccccCCCCCCCC
Q psy15432 937 AYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID 1016 (1255)
Q Consensus 937 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~ 1016 (1255)
+.. +|++
T Consensus 307 a~~-------------------------------------------------------------------------lgi~ 313 (494)
T 4hv4_A 307 ATE-------------------------------------------------------------------------EGIE 313 (494)
T ss_dssp HHH-------------------------------------------------------------------------HTCC
T ss_pred HHH-------------------------------------------------------------------------cCCC
Confidence 876 4566
Q ss_pred -HHHHHHHhcCC-CCCcEEEEee----------cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEE
Q psy15432 1017 -PKTYRGIKACV-WPGRVQVIRK----------NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILV 1084 (1255)
Q Consensus 1017 -~~i~~gL~~~~-~pGR~E~v~~----------~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlV 1084 (1255)
+.+.+||++|+ ||||||++.. ++++||+||||||+++++++++++.... .+++++|
T Consensus 314 ~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~------------~~rii~V 381 (494)
T 4hv4_A 314 DEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWP------------DKRIVML 381 (494)
T ss_dssp HHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCT------------TSEEEEE
T ss_pred HHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcC------------CCeEEEE
Confidence 67999999999 9999999976 3688999999999999999999986531 2478899
Q ss_pred EecCCCCChhhhhhhhh-cCCCCcEEEEcCCCCcccccccCCCCCcc---ccc---ccccccCCHHHHHHHHHHHcCCCc
Q psy15432 1085 FNVTGERDPTKLLSPLL-QSNQFEYILVTPNILTNEIRWRGQPLDED---WKS---TVQSINISLAIQLAYLWMFRMNKS 1157 (1255)
Q Consensus 1085 fg~~~drD~~~ll~~L~-~~~~~d~vi~t~~~~~~~~~~~~~~~~~~---~~~---d~~~~~~~~~~~~~~~~~~~~~~~ 1157 (1255)
||+.++.....++..+. .-..+|.+++|+.++..+.+..+.+.... +.. ....+..+.++.++.+.....+.+
T Consensus 382 ~g~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~~~~~~~~~~~eAv~~a~~~a~~gD 461 (494)
T 4hv4_A 382 FQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGED 461 (494)
T ss_dssp ECCBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTSCCCEEECCTTTHHHHHHHHCCTTE
T ss_pred EcCCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCCCCeEEeCCHHHHHHHHHHhCCCCC
Confidence 98654321122222221 01358999999877655433222111111 111 012234578889999999999999
Q ss_pred eEEeecCCCC
Q psy15432 1158 AELKRNQSSL 1167 (1255)
Q Consensus 1158 ~~l~~~~~~~ 1167 (1255)
++|++|++++
T Consensus 462 vVL~~GaG~~ 471 (494)
T 4hv4_A 462 LILVQGAGNI 471 (494)
T ss_dssp EEEEECSSTH
T ss_pred EEEEECCCCH
Confidence 9999999874
No 31
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=4.3e-35 Score=355.74 Aligned_cols=317 Identities=13% Similarity=0.097 Sum_probs=213.2
Q ss_pred ceEEEecCCCCCccHHHHHHHHHHHCCCCeEEE--------cCcccccccceeeeCCeecChhhhhhHHHHHHHHHHHHh
Q psy15432 720 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFF--------SSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKR 791 (1255)
Q Consensus 720 l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~--------tSPhL~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~ 791 (1255)
.++|+||||||||||++|+++||+++|+++++. +||. +++..| |.|.....
T Consensus 122 ~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~~~~T~~--nln~~i---g~~~~~~~---------------- 180 (524)
T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDT--NLQQVF---AHSSYLGT---------------- 180 (524)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCH--HHHHHT---TSSEECCC----------------
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEeccccCch--hhhhhh---hhHHhhCC----------------
Confidence 589999999999999999999999999998743 2222 222222 11110000
Q ss_pred hcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--Cccccc-cc-cCCCcEEEEcCCCchhhhhcCCCHHHHHHHHh
Q psy15432 792 KHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYDNT-NI-IPNTAVVGITSLGYDHTAVLGNTIEEITMQKA 867 (1255)
Q Consensus 792 ~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D~T-Nv-i~~P~VavITnIg~DHl~~LG~TleeIA~~Ka 867 (1255)
...++ ..+.++|++|+|+++. +..+.. .+ -.+|+++|||||+.||+++|| |+|+|+.+|+
T Consensus 181 ----~~~~~-----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~aK~ 244 (524)
T 3hn7_A 181 ----EKDDS-----------DNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFH 244 (524)
T ss_dssp ----CCCSS-----------CTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHH
T ss_pred ----Ccccc-----------cccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHHHHH
Confidence 00000 0234578999999985 333321 11 127999999999999999999 9999999999
Q ss_pred cccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCC----------------------cc------------ce
Q psy15432 868 GIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPS----------------------IL------------NY 910 (1255)
Q Consensus 868 gI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~----------------------~~------------~~ 910 (1255)
.||+ +++.+|++. +|+....++...+ .++++.++. .. .+
T Consensus 245 ~i~~~~~~~g~~VlN~-DD~~~~~~~~~~~---~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f 320 (524)
T 3hn7_A 245 HMVRMIPSTGKIIMPA-ATISLEDTLAKGV---WTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQF 320 (524)
T ss_dssp HHHTTSCTTSEEEEES-SCHHHHHHHHTCC---CSCEEEEEEEC-------------------CCCSEEEEEEETTTTEE
T ss_pred HHHHhCCCCCEEEEEC-CCHHHHHHHHhcc---CCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEE
Confidence 9996 677888887 4443333332211 122222110 00 11
Q ss_pred --eccC-----CccccCCCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHhhhhhcCCCCCCCCCCCCCCcCCCCC
Q psy15432 911 --RWRG-----QPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPG 983 (1255)
Q Consensus 911 --~~~~-----~~v~l~L~G~hq~~Na~lAiala~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (1255)
.+.+ ..+.++++|.||++|+++|++++..
T Consensus 321 ~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~-------------------------------------------- 356 (524)
T 3hn7_A 321 TVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYN-------------------------------------------- 356 (524)
T ss_dssp EEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred EEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHH--------------------------------------------
Confidence 1122 2367899999999999999998876
Q ss_pred CCCCccccCCCCCCCCcccccccccCCCCCCCC-HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHH
Q psy15432 984 GQGHLSFSETPGGQGHLTGNQSSLLMGPHFEID-PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWF 1060 (1255)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~i~-~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l 1060 (1255)
+|++ +.+.+||++|+ ||||||++.. ++++||+|+||||+|++++++++
T Consensus 357 -----------------------------lgi~~~~i~~~L~~~~~~~gR~e~~~~~~g~~vi~D~ahnp~~~~a~l~~l 407 (524)
T 3hn7_A 357 -----------------------------IGVSVKTACAALSAFAGIKRRMELIGDVNDILVFDDFAHHPTAITTTLDGA 407 (524)
T ss_dssp -----------------------------TTCCHHHHHHHHHTCCCBTTSSEEEEEETTEEEEEECCCSHHHHHHHHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHhCCCCCceEEEEEecCCcEEEEECCCCHHHHHHHHHHH
Confidence 4566 67999999999 9999999975 57889999999999999999999
Q ss_pred HhhhccccCCCcccCCCCCcEEEEEecC----CCCChhhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCcccc----
Q psy15432 1061 LRKSEAEANPTQSKSSNVIQRILVFNVT----GERDPTKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWK---- 1132 (1255)
Q Consensus 1061 ~~~~~~~~~~~~~~~~~~~~~vlVfg~~----~drD~~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~---- 1132 (1255)
+.... .+++++|||++ .+++...++..+ ...+|.++++++.+....... +.....
T Consensus 408 ~~~~~------------~~r~i~V~g~~~~~~~~g~~~~~~~~~--~~~aD~vil~~~~~r~~~~~~---l~~~~~~~~~ 470 (524)
T 3hn7_A 408 KKKLA------------DRRLWAIIEPRSNTMKMGIHQDSLAQS--ATLADHTLWYEPTGLEWGLKE---VIDNATIANP 470 (524)
T ss_dssp HHHHT------------TSCEEEEEECCCCSSCCSCCTTHHHHH--TTTSSEEEEECCTTCCCSHHH---HHHHHHHHCG
T ss_pred HhhcC------------CCCEEEEECCCCcchhhhhhHHHHHHH--HhcCCEEEEcCCCCCCCCHHH---HHHHHHhhcc
Confidence 87642 25789999984 566777766666 346899999986643211100 000000
Q ss_pred -cccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1133 -STVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1133 -~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
.....+..+.++.++.+.....+++++|++|+++.
T Consensus 471 ~~~~~~~~~~~~eai~~~~~~a~~gD~VLv~GaG~~ 506 (524)
T 3hn7_A 471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGGF 506 (524)
T ss_dssp GGCCEEEESCHHHHHHHHHHHCCTTCEEEEEESSCG
T ss_pred CCCCeEEECCHHHHHHHHHHhCCCCCEEEEEcCCCH
Confidence 11233456899999999999999999999998875
No 32
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=3.8e-34 Score=341.41 Aligned_cols=246 Identities=17% Similarity=0.175 Sum_probs=187.3
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+++||+++|+++.+.++- |.|+...
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~~------------------------- 154 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASEV------------------------- 154 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhhh-------------------------
Confidence 389999999999999999999999999988554331 2222200
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccCCccccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccCCCc---ee
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNC---IA 264 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k~g~---~~ 264 (1255)
.....++|++|+|+|+++ +|.+|.+ +|+++|||||+.||+|+|| |+|+|+.+|++||+... .+
T Consensus 155 -----------~~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~~ 220 (451)
T 3lk7_A 155 -----------VQAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFL 220 (451)
T ss_dssp -----------TTTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSEE
T ss_pred -----------hhcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 001246899999999986 6888877 7999999999999999999 99999999999998654 47
Q ss_pred eeccCCCchHHHHHHHhhhccCceEEEcCCcc----------eeeecC----cccccCCCchhHHhhHHHHHHHHHHHHH
Q psy15432 265 VTSANQRGPCKQILLETSRALNCVLLEAPSIL----------NYRWRG----QPLDEDWKSTVQSINISLAIQLAYLWMF 330 (1255)
Q Consensus 265 v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~----------~~~~~~----~~i~l~l~G~~q~~Na~lAia~a~~~l~ 330 (1255)
|++. +++...... .+.+++++.++... .+.+.+ ..+.++++|.||++|+++|++++..+
T Consensus 221 V~n~-dd~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-- 293 (451)
T 3lk7_A 221 VLNF-NQGISKELA----KTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA-- 293 (451)
T ss_dssp EEET-TSHHHHHHH----TTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH--
T ss_pred EEEC-CcHHHHHHH----hhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc--
Confidence 8877 555544332 22233333322110 111222 13678999999999999999998776
Q ss_pred hhccchhhhhHHHHhhhhhccCCCCCCCCCCCCCCccCCCCCCCCccccCCCCCCCCccccccccCCCCCCCChHHHHHH
Q psy15432 331 RMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRG 410 (1255)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~i~~g 410 (1255)
|++ ++.|++|
T Consensus 294 ---------------------------------------------------------------------gi~-~~~i~~~ 303 (451)
T 3lk7_A 294 ---------------------------------------------------------------------GIS-NQVIRET 303 (451)
T ss_dssp ---------------------------------------------------------------------TCC-HHHHHHH
T ss_pred ---------------------------------------------------------------------CCC-HHHHHHH
Confidence 667 9999999
Q ss_pred HhcCC-CCCceEEEEe-cCcEEEEc-cCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEEEEEecC
Q psy15432 411 IKACV-WPGRVQVIRK-NNFKYFLD-GAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVT 487 (1255)
Q Consensus 411 L~~~~-~pGR~e~v~~-~~~~vilD-gAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVfg~~ 487 (1255)
|++|+ ||||||++.. +++.||+| |||||+|+.++++.+. . +|+++|||.+
T Consensus 304 L~~f~~~~gR~e~v~~~~g~~vi~D~~a~np~a~~~al~~~~----~-----------------------~rii~I~g~~ 356 (451)
T 3lk7_A 304 LSNFGGVKHRLQSLGKVHGISFYNDSKSTNILATQKALSGFD----N-----------------------TKVILIAGGL 356 (451)
T ss_dssp HHHCCCCTTSSEEEEEETTEEEEECTTCCSHHHHHHHHHTSC----G-----------------------GGEEEEECCS
T ss_pred HHhCCCCCCcEEEEeeeCCcEEEEeCCCCCHHHHHHHHHhCC----C-----------------------CCEEEEECCC
Confidence 99998 9999999975 57889999 7999999999876442 1 1588999866
Q ss_pred C-CCChhhhhHHhhccCCCcEEEEc
Q psy15432 488 G-ERDPTKLLSPLLQSNQFEYILVT 511 (1255)
Q Consensus 488 ~-drD~~~ll~~L~~~~~~d~vi~t 511 (1255)
. ++|.++|++.+ + . +|.+|++
T Consensus 357 ~r~~d~~~l~~~l-~-~-~d~vi~~ 378 (451)
T 3lk7_A 357 DRGNEFDELIPDI-T-G-LKHMVVL 378 (451)
T ss_dssp CCSCCCGGGHHHH-T-T-CSEEEEC
T ss_pred CCCCCHHHHHHHH-H-h-cCEEEEE
Confidence 4 68899999888 3 3 8998886
No 33
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.92 E-value=9.3e-25 Score=250.11 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=132.4
Q ss_pred HhhccCCcccccccchHHHHHHHHHhcCcccccccceEEEecCCCCCccHHHHHHHHHHHCCCCeEEEcCccccccccee
Q psy15432 685 ESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERI 764 (1255)
Q Consensus 685 ~~~~~g~~~~~~~~~v~~~~~~L~~Lg~~~~~~~~l~vIhVTGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI 764 (1255)
+++++|. +.+.++..+.+.+. ...++|+||||||||||++|+++||+++|+++++...--.-+++...
T Consensus 85 ~a~~~gi------~v~~~~e~~~~~~~------~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~ 152 (326)
T 3eag_A 85 AILNLGL------PYISGPQWLSENVL------HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSA 152 (326)
T ss_dssp HHHHTTC------CEEEHHHHHHHHTG------GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSE
T ss_pred HHHHcCC------cEEeHHHHHHHHHh------cCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcce
Confidence 3445565 34556654443332 23589999999999999999999999999998754211111332222
Q ss_pred eeCCeecChhhhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHhhhcCCCCEEEEecccC--Cccc----cccccCC
Q psy15432 765 KLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRYD----NTNIIPN 838 (1255)
Q Consensus 765 ~InG~pIs~~~f~~~~~~v~~~l~~~~~~~~~~pt~Fe~lT~mAf~~F~~~~vD~aVlEVG~G--Gr~D----~TNvi~~ 838 (1255)
. -|.|.+. ....+.|++|+|+|+. +..+ ...+ +
T Consensus 153 ~-~~~p~~~--------------------------------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~ 191 (326)
T 3eag_A 153 R-LPQTPRQ--------------------------------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--R 191 (326)
T ss_dssp E-CCCCCSS--------------------------------------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--C
T ss_pred e-cCCcccc--------------------------------------ccCCCCCEEEEEccccccchhhcccceeEe--c
Confidence 1 1334331 1456889999999984 3322 2333 7
Q ss_pred CcEEEEcCCCchhhhhcCCCHHHHHHHHhcccc---CCceEEEccCCCChhHHHHHHHhhhcCCeEEEcCCccc------
Q psy15432 839 TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK---PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILN------ 909 (1255)
Q Consensus 839 P~VavITnIg~DHl~~LG~TleeIA~~KagI~K---~g~~av~~~~qd~~~~~vl~~~A~~~~~~l~~~~~~~~------ 909 (1255)
|+++|||||+.||+++|| |+|+|+.+|++||+ +++.+|++. +|+...+++.+. ..++++.++...+
T Consensus 192 P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~~~~~~~~V~n~-Dd~~~~~~~~~~---~~~~~~~~g~~~d~~~~~~ 266 (326)
T 3eag_A 192 PRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTVPSEGLIVCNG-RQQSLQDTLDKG---CWTPVEKFGTEHGWQAGEA 266 (326)
T ss_dssp CSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTSCTTSEEEEES-SCHHHHHHHTTC---CCSCEEEESSSSSEEEEEE
T ss_pred CCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHhCCCCCEEEEeC-CCHHHHHHHhhc---cCCCEEEECCCCcEEEEEe
Confidence 999999999999999999 99999999999997 688999997 444444433221 1233443332111
Q ss_pred -----e--eccC---CccccCCCchhHHHHHHHHHHHHHH
Q psy15432 910 -----Y--RWRG---QPLDEDWKSTVQSINISLAIQLAYL 939 (1255)
Q Consensus 910 -----~--~~~~---~~v~l~L~G~hq~~Na~lAiala~~ 939 (1255)
+ ...+ ..+.++++|.||++|+++|++++..
T Consensus 267 ~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~ 306 (326)
T 3eag_A 267 NADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARH 306 (326)
T ss_dssp CTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence 1 1122 1467899999999999999998876
No 34
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.91 E-value=5.2e-24 Score=243.92 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=120.6
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecChhhhhhHHHHHHHHHHhhhhccCCcch
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA 187 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~~~ft~~~~~v~~~l~~~~~~~~~~p~ 187 (1255)
.++|+||||||||||+.|+++||+++|+++++....-..+++...++ |.|.+.
T Consensus 108 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~-~~p~~~-------------------------- 160 (326)
T 3eag_A 108 HWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARL-PQTPRQ-------------------------- 160 (326)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEEC-CCCCSS--------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceec-CCcccc--------------------------
Confidence 47999999999999999999999999999875432111111111111 222220
Q ss_pred HHHHHHHHhhhhhhccCCCEEEEeeccC--Ccc----ccccccCCccEEEEcCCCcchhhhcCCCHHHHHHHHHcccC--
Q psy15432 188 YFKFLTVMSFYVFVKEKPDAVIMEVGIG--GRY----DNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK-- 259 (1255)
Q Consensus 188 ~Fe~Lt~~A~~~F~~~~vD~aVlEvG~G--Gr~----D~tnii~~P~v~vITnIg~DHld~lG~Tle~Ia~~KagI~k-- 259 (1255)
...++.|++|+|+|+. +.. +..++ +|+++|||||+.||+|+|| |+|+|+.+|++||+
T Consensus 161 ------------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~~ 225 (326)
T 3eag_A 161 ------------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--RPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRTV 225 (326)
T ss_dssp ------------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--CCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTTS
T ss_pred ------------ccCCCCCEEEEEccccccchhhcccceeEe--cCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHhC
Confidence 1456889999999984 322 23344 8999999999999999999 99999999999997
Q ss_pred -CCceeeeccCCCchHHHHHHHhhhccCceEEEcCCcce-----------eee--cC---cccccCCCchhHHhhHHHHH
Q psy15432 260 -PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILN-----------YRW--RG---QPLDEDWKSTVQSINISLAI 322 (1255)
Q Consensus 260 -~g~~~v~~~~q~~e~~~vl~~~a~~~~~~l~~~~~~~~-----------~~~--~~---~~i~l~l~G~~q~~Na~lAi 322 (1255)
++..+|++. +|+....++.+.+ .+.++.++...+ |.+ .+ ..+.++++|.||++|+++|+
T Consensus 226 ~~~~~~V~n~-Dd~~~~~~~~~~~---~~~~~~~g~~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 226 PSEGLIVCNG-RQQSLQDTLDKGC---WTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp CTTSEEEEES-SCHHHHHHHTTCC---CSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCHHHHHHHhhcc---CCCEEEECCCCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence 677888887 5555544443221 122222221111 111 11 14679999999999999999
Q ss_pred HHHHHH
Q psy15432 323 QLAYLW 328 (1255)
Q Consensus 323 a~a~~~ 328 (1255)
+++..+
T Consensus 302 a~a~~l 307 (326)
T 3eag_A 302 AAARHV 307 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998776
No 35
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.36 E-value=4.5e-12 Score=131.23 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=81.0
Q ss_pred hHHHHHHHhcCC-CCCceEEEEe-cCcEEEEccCCCHHHHHHHHHHHHhhhhcccccCccCCCCCCCCCccCCCCCccEE
Q psy15432 404 DPKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRI 481 (1255)
Q Consensus 404 ~e~i~~gL~~~~-~pGR~e~v~~-~~~~vilDgAHnp~si~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 481 (1255)
.++|++||++|+ ++||||++.. ++++||+||||||+||+++++++++.++. +|++
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l~al~~~~~~-----------------------~rii 67 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQ-----------------------QRIL 67 (163)
T ss_dssp ----------------CCEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHTT-----------------------SCEE
T ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHHHHHHHhcCC-----------------------CcEE
Confidence 468899999999 9999999975 57899999999999999999999875432 2789
Q ss_pred EEEecCCC----CCh-hhhhHHhhccCCCcEEEEcCCCCCCCCCCCCcCCCCcccccccccccccCCCCCCCCCCCCCCC
Q psy15432 482 LVFNVTGE----RDP-TKLLSPLLQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNV 556 (1255)
Q Consensus 482 lVfg~~~d----rD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1255)
+||++.++ ++. ..+...+ ..+|.+|+|+ ++ +.+ .
T Consensus 68 vvf~~g~~s~r~k~~~~~~~~~~---~~aD~vi~~~--~~-~~~----~------------------------------- 106 (163)
T 3mvn_A 68 AVLEPRSNTMKMGVHKHELATSL---QDADSVFIYQ--PP-TIE----W------------------------------- 106 (163)
T ss_dssp EEECCC---------CHHHHHHH---TTCSEEEEEC--C---------C-------------------------------
T ss_pred EEECCCCcchhhHHHHHHHHHHH---hcCCEEEEEC--CC-Ccc----c-------------------------------
Confidence 99998654 333 3333333 3589999985 22 110 0
Q ss_pred CCCCCCcccCCCCCcccCCCCCCCcccccccccccchhhHHHHHHhhccCCCcEEEcCCHHHHHHHHhccCCCCCceEEE
Q psy15432 557 GQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILV 636 (1255)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~~ai~~~~~~~~~~~~~vlv 636 (1255)
. +++....+. .++..++|+++|++.+.... .+++.|||
T Consensus 107 ---------------------------------~------~~~~~~~~~--~~~~~~~d~~eai~~~~~~~-~~gDvVLv 144 (163)
T 3mvn_A 107 ---------------------------------Q------VSEVLANLA--QPAISADDVDELVMRIVQQA-KPNDHILI 144 (163)
T ss_dssp ---------------------------------C------HHHHHTTCC--SCEEEESSHHHHHHHHHHHC-CTTCEEEE
T ss_pred ---------------------------------C------HHHHHhhCC--CCeEEECCHHHHHHHHHHhC-CCCCEEEE
Confidence 0 112222222 25778999999999999886 57789999
Q ss_pred eccccc
Q psy15432 637 TGSLHL 642 (1255)
Q Consensus 637 tGSlhL 642 (1255)
+||..+
T Consensus 145 ~Gsg~~ 150 (163)
T 3mvn_A 145 MSNGAF 150 (163)
T ss_dssp ECSSCG
T ss_pred ECCCCH
Confidence 999763
No 36
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.24 E-value=2.2e-11 Score=126.10 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=78.1
Q ss_pred HHHHHHHhcCC-CCCcEEEEee-cCcEEEEEcCcCHHHHHHHHHHHHhhhccccCCCcccCCCCCcEEEEEecCCC----
Q psy15432 1017 PKTYRGIKACV-WPGRVQVIRK-NNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGE---- 1090 (1255)
Q Consensus 1017 ~~i~~gL~~~~-~pGR~E~v~~-~~~~vilDgAHNP~S~~a~l~~l~~~~~~~~~~~~~~~~~~~~~vlVfg~~~d---- 1090 (1255)
++|.+||++|+ ++||||++.. +++++|+||||||+||++++++++.... .+++++||++.++
T Consensus 12 ~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l~al~~~~~------------~~riivvf~~g~~s~r~ 79 (163)
T 3mvn_A 12 DLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVG------------QQRILAVLEPRSNTMKM 79 (163)
T ss_dssp ---------------CCEEEEEETTEEEEEECCCSHHHHHHHHHHHHHHHT------------TSCEEEEECCC------
T ss_pred HHHHHHHHhCCCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHHHHHHHhcC------------CCcEEEEECCCCcchhh
Confidence 57899999999 9999999975 5788999999999999999999987532 2578999998653
Q ss_pred CCh-hhhhhhhhcCCCCcEEEEcCCCCcccccccCCCCCccccc--ccccccCCHHHHHHHHHHHcCCCceEEeecCCCC
Q psy15432 1091 RDP-TKLLSPLLQSNQFEYILVTPNILTNEIRWRGQPLDEDWKS--TVQSINISLAIQLAYLWMFRMNKSAELKRNQSSL 1167 (1255)
Q Consensus 1091 rD~-~~ll~~L~~~~~~d~vi~t~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1167 (1255)
++. ..+...+ ..+|.+|+|+.. +... ...+.... ....+..+.++.++.+.....+.+++|++|++++
T Consensus 80 k~~~~~~~~~~---~~aD~vi~~~~~---~~~~---~~~~~~~~~~~~~~~~~d~~eai~~~~~~~~~gDvVLv~Gsg~~ 150 (163)
T 3mvn_A 80 GVHKHELATSL---QDADSVFIYQPP---TIEW---QVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGAF 150 (163)
T ss_dssp ---CHHHHHHH---TTCSEEEEECC-------C---CHHHHHTTCCSCEEEESSHHHHHHHHHHHCCTTCEEEEECSSCG
T ss_pred HHHHHHHHHHH---hcCCEEEEECCC---Cccc---CHHHHHhhCCCCeEEECCHHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 333 2222333 258999988632 1100 00011110 1233456899999999999999999999999983
No 37
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.55 E-value=0.18 Score=52.11 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=29.3
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+++|.|+++| ||||++..++..|...|+||.++-
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3688888654 699999999999999999998874
No 38
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.33 E-value=0.29 Score=55.58 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.6
Q ss_pred cccceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 717 IKKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 717 ~~~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+..-+||+|+| =-|||||+.-|+..|.+.|+||++.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 35668999997 3369999999999999999999987
No 39
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.27 E-value=0.38 Score=54.56 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.8
Q ss_pred CCccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 106 KKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 106 ~~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+-++|+|+| =-|||||+.-|+..|.+.|+||+++-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3558999996 34799999999999999999999974
No 40
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=86.44 E-value=0.86 Score=52.50 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=33.0
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
-+.|.|+||- ||++|+..+...|++.|++++++.|..
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgq 191 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQ 191 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSH
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccc
Confidence 4679999985 999999999999999999999987653
No 41
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=85.76 E-value=0.81 Score=49.39 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.1
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
++|.|++++ ||||++..++..|...|+||.++-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 567776655 799999999999999999998873
No 42
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=84.17 E-value=0.98 Score=52.02 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred cceEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 719 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 719 ~l~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
+.+.|.|+|| -||++|+..+...|++.|++++++.|.
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg 190 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG 190 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc
Confidence 3578999998 499999999999999999999998765
No 43
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=83.86 E-value=0.82 Score=48.02 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.9
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|++++ |||||+.-++..|.+.|+||+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 478888875 89999999999999999999986
No 44
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=82.85 E-value=0.73 Score=48.44 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.7
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|++++ |||||+.-++..|.+.|+||+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 578888775 89999999999999999999986
No 45
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.17 E-value=16 Score=43.28 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.9
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
-.+|.++|.+ |||||++-|+..|+..|+++.++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4688888765 79999999999999999999998754
No 46
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=79.52 E-value=3 Score=48.09 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=33.5
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
+.+.|-|+||. |||+|+..+...|++.|++++++.+..
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgq 208 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ 208 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCc
Confidence 35688999985 999999999999999999999988763
No 47
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=79.38 E-value=13 Score=47.65 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=31.2
Q ss_pred CccEEEEcCC---CChhHHHHHHHHHHHHC-----CCCeEEEc
Q psy15432 107 KLNVIHISGT---KGKGSTCAYCESILRSH-----GFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGT---nGKgST~a~l~sIL~~~-----G~k~Gl~t 141 (1255)
..+.|-|+|| -|||++++-|-.+|++. |++|+.|-
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 4578999998 49999999999999998 99999985
No 48
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=79.12 E-value=1.8 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=29.9
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+++|.|+++| ||||++.-++..|.+.|+||.++-.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3688898665 6999999999999999999988743
No 49
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=78.19 E-value=8.1 Score=45.89 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.5
Q ss_pred ceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
.++|.++|.+ |||||+.-|+..|+..|+++.++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4688888764 79999999999999999999988653
No 50
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=77.93 E-value=1.9 Score=46.45 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=32.0
Q ss_pred CccEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+++.|-|||| -|||++++-|...|++.|++++.|-
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 5688999999 4899999999999999999999985
No 51
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=76.63 E-value=2.1 Score=46.99 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=32.5
Q ss_pred CCccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 106 KKLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 106 ~~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+++.|-||||. |||+++.-|...|++.|++++.|-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 346889999987 899999999999999999999985
No 52
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=76.54 E-value=1.6 Score=46.98 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=31.9
Q ss_pred cceEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+++.|-|||| .|||+++.-|...|++.|+|++.|-
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 4678999998 5899999999999999999999996
No 53
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=75.94 E-value=3.9 Score=47.27 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=43.2
Q ss_pred chHHHHHHHHHhcCCccC--CCCccEEEEcCCC---ChhHHHHHHHHHHHH------CCCCeEEE
Q psy15432 87 QVDQVVQYLGHLNITLDD--IKKLNVIHISGTK---GKGSTCAYCESILRS------HGFSTGFF 140 (1255)
Q Consensus 87 ~l~~~~~~L~~Lg~~~~~--~~~l~vIhVtGTn---GKgST~a~l~sIL~~------~G~k~Gl~ 140 (1255)
.++++.++...++.+.+. ..+.++|.|++.| |||||++-++..|.. .|+||.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 688999998888765432 2357899999665 799999999999984 69999775
No 54
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=75.93 E-value=2.4 Score=44.76 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=29.2
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++|.|++++ ||||++..++..|.+.|+||.++-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 578888766 799999999999999999998874
No 55
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=75.91 E-value=4.5 Score=44.56 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++|.||+++ ||||++.-++..|.+.|+||.++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 56899999775 89999999999999999999886
No 56
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=75.16 E-value=1.8 Score=47.44 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.1
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+.+.|-||||. |||+++.-|...|++.|++++.|-
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46889999987 899999999999999999999995
No 57
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.54 E-value=3.4 Score=42.70 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=31.6
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
++++|.|+|.+ ||||++.-+...|+..|++++.+..-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 46789999975 89999999999999999999998743
No 58
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=74.50 E-value=2.1 Score=45.22 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.9
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
++|.|++++ ||||++..++..|.+.|+||.++-
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 578887765 799999999999999999998873
No 59
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.93 E-value=2.5 Score=43.70 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=31.3
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
++++|.|+|.+ ||||++..+...|+..|++++.+..-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 46789999975 89999999999999999999998743
No 60
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=73.58 E-value=21 Score=42.13 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=31.0
Q ss_pred ceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|.++|-+ |||||+..++..|+..|+++.+....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 5688888865 59999999999999999999887654
No 61
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=73.36 E-value=5 Score=44.80 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=30.9
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.++|.||+++ ||||++.-++..|.+.|.||.++-
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 45799999875 899999999999999999998863
No 62
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=72.86 E-value=3 Score=45.00 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=31.0
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.++|.|+++| ||||++..++..|.+.|+||.++-
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45899999777 699999999999999999998873
No 63
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=72.06 E-value=4.5 Score=44.55 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.1
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++|.||+++ ||||++.-++..|.+.|+||.+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 45899999774 89999999999999999999875
No 64
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=70.63 E-value=12 Score=47.95 Aligned_cols=35 Identities=9% Similarity=-0.042 Sum_probs=31.4
Q ss_pred cceEEEecCC---CCCccHHHHHHHHHHHC-----CCCeEEEc
Q psy15432 719 KLNVIHISGT---KGKGSTCAYCESILRSH-----GFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGT---nGKgST~aml~sILr~~-----G~rtGl~t 753 (1255)
..+.|-|+|| .|||++++-|..+|++. |++|+.|-
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 3578999998 59999999999999999 99999996
No 65
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=70.23 E-value=2.7 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.5
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
+.++|.|+++| ||||++..++..|...|+||.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999777 69999999999999999999886
No 66
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=69.98 E-value=6.3 Score=43.82 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=30.6
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.++|.||+++ ||||++.-|+..|.+.|+||.++-
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45799998775 899999999999999999998763
No 67
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=69.83 E-value=3.5 Score=44.30 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.6
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++|.|++++ ||||++.-++..|.+.|+||.++-
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 577887665 799999999999999999999874
No 68
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=69.43 E-value=5 Score=44.86 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.2
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
..++|.||+++ ||||++.-++..|.+.|.||.+.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 35789999875 89999999999999999999886
No 69
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=69.33 E-value=4.1 Score=43.48 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.7
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
++|.|+++| ||||++.-++..|.+.|+||.++-
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 578887665 799999999999999999998863
No 70
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=68.91 E-value=4.4 Score=43.90 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=29.0
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+++| ||||++.-++..|.+.|+||.++
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689998777 59999999999999999999886
No 71
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=68.36 E-value=3.3 Score=45.16 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=31.4
Q ss_pred ceEEEecCC---CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 720 LNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 720 l~vIhVTGT---nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
.+.|-|||| .|||+++.-|...|++.|++++.|-
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 478999998 6999999999999999999999996
No 72
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=67.70 E-value=4.6 Score=44.47 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.5
Q ss_pred cEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+++| ||||++.-|+..|.+.|+||.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 589998665 79999999999999999999876
No 73
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=67.69 E-value=3.6 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=28.0
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|++++ ||||++..++..|...|+||.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 578887665 69999999999999999999886
No 74
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=67.37 E-value=4.8 Score=43.85 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=31.3
Q ss_pred ccEEEEcCC---CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 108 LNVIHISGT---KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 108 l~vIhVtGT---nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+.|-|||| -|||+++.-|...|++.|++++.|-
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 478999999 5999999999999999999999995
No 75
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=66.79 E-value=3.9 Score=45.02 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.4
Q ss_pred eEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+++| ||||++.-|+..|...|+||.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 589998665 79999999999999999999875
No 76
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=66.33 E-value=3.8 Score=44.38 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=29.1
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
.++|.|+++| ||||++.-++..|...|+||.+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3688888776 59999999999999999999885
No 77
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=66.00 E-value=7.7 Score=44.77 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=41.5
Q ss_pred chHHHHHHHHHhcCcccc--cccceEEEecCCC---CCccHHHHHHHHHHH------CCCCeEEE
Q psy15432 699 QVDQVVQYLGHLNITLDD--IKKLNVIHISGTK---GKGSTCAYCESILRS------HGFSTGFF 752 (1255)
Q Consensus 699 ~v~~~~~~L~~Lg~~~~~--~~~l~vIhVTGTn---GKgST~aml~sILr~------~G~rtGl~ 752 (1255)
.++++..+...++.+... ....++|.|++.| |||||+.-++..|.. .|+||.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 588888887777654311 2457899999665 799999999999984 69999775
No 78
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=65.18 E-value=6.2 Score=43.89 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.3
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
.++|.||+++ ||||++.-|+..|.+.|+||.+.
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 4788888775 89999999999999999999776
No 79
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=64.96 E-value=4.5 Score=42.76 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=29.9
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHC-CCCeEEEc
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSH-GFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~-G~k~Gl~t 141 (1255)
+.++|.|+++| ||||++.-++..|.+. |+||.++-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 35788888655 6999999999999998 99998874
No 80
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=63.07 E-value=4.7 Score=46.74 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHhcCCccC--CCCccEEEEcCCC---ChhHHHHHHHHHHH------HCCCCeEEE
Q psy15432 86 VQVDQVVQYLGHLNITLDD--IKKLNVIHISGTK---GKGSTCAYCESILR------SHGFSTGFF 140 (1255)
Q Consensus 86 ~~l~~~~~~L~~Lg~~~~~--~~~l~vIhVtGTn---GKgST~a~l~sIL~------~~G~k~Gl~ 140 (1255)
..++++.++..+.+.+.+. ..+.++|.|++.| |||||++-++..|. ..|+||.+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3678888888877665432 2367899999555 89999999999998 579999886
No 81
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=62.96 E-value=3.8 Score=43.37 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=29.5
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHC-CCCeEEEc
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSH-GFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~-G~rtGl~t 753 (1255)
+.++|.|+++| ||||++..++..|... |+||.+.-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 35788888654 6999999999999998 99998873
No 82
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=62.77 E-value=5.7 Score=41.69 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=25.6
Q ss_pred EEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+|.|+ |--||||++.-++..|.+.| ||.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 56666 44599999999999999999 99886
No 83
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=62.58 E-value=5.9 Score=42.75 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=29.2
Q ss_pred CccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++|.|++.| ||||++.-++..|. .|+||.++
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 45899998777 69999999999999 99999886
No 84
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=62.55 E-value=4.6 Score=43.62 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=29.2
Q ss_pred cceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
+.++|.|++.| ||||++..++..|. .|+||.++
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 45899998877 59999999999999 99999876
No 85
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=59.31 E-value=4.9 Score=42.19 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=25.3
Q ss_pred EEEec---CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 722 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 722 vIhVT---GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
+|.|+ |--||||++..++..|...| ||.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 45565 55599999999999999999 99876
No 86
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=58.15 E-value=20 Score=40.89 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=29.2
Q ss_pred ceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
.++|.|+ |--||||+++-++..|...|+||.+...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4566666 4557999999999999999999998864
No 87
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=57.78 E-value=16 Score=40.00 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=24.0
Q ss_pred cCCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 114 SGTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 114 tGTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
-|--||||++..++..|.+.|+||.++
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 356789999999999999999999885
No 88
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=56.89 E-value=8.3 Score=44.28 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 106 KKLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 106 ~~l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+.++|.|++.| ||||++.-++..|.+.|+||.+.-
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356899998766 699999999999999999998864
No 89
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=56.65 E-value=15 Score=41.55 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=31.0
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+..+|.|+|.+ |||||++.++..|...|.++.+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45689999876 7999999999999999999988754
No 90
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.63 E-value=7.5 Score=43.47 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.9
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHH-CCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRS-HGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~-~G~k~Gl~tS 142 (1255)
+-.+|.|.|-| |||||+..++..+.. .|+++++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34577777655 899999999999985 8999988764
No 91
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=55.54 E-value=11 Score=43.45 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHhcCcccc--cccceEEEecCCC---CCccHHHHHHHHHH------HCCCCeEEE
Q psy15432 698 VQVDQVVQYLGHLNITLDD--IKKLNVIHISGTK---GKGSTCAYCESILR------SHGFSTGFF 752 (1255)
Q Consensus 698 ~~v~~~~~~L~~Lg~~~~~--~~~l~vIhVTGTn---GKgST~aml~sILr------~~G~rtGl~ 752 (1255)
..++++..+..+.+.+... ....++|.|++.| |||||+..++..|. ..|+||.+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3677777777766554321 2457899999555 89999999999998 579999876
No 92
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=55.28 E-value=7 Score=44.90 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=31.1
Q ss_pred ccceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 718 KKLNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 718 ~~l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~t 753 (1255)
.+.++|.|++.| ||||++.-++..|...|+||.+.-
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 456899998766 699999999999999999998863
No 93
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=55.03 E-value=7.2 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.9
Q ss_pred eEEEecCCC--CCccHHHHHHHHHHH-CCCCeEEEcC
Q psy15432 721 NVIHISGTK--GKGSTCAYCESILRS-HGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTGTn--GKgST~aml~sILr~-~G~rtGl~tS 754 (1255)
.+|.|.|-| |||||+..++..|.. .|+++.+...
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 455555543 899999999999985 8999988754
No 94
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=54.37 E-value=11 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=26.5
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|. |--||||++..++..|.+.|+||.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 455554 55689999999999999999999886
No 95
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=54.28 E-value=12 Score=41.00 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=27.4
Q ss_pred ccEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 108 LNVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 108 l~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+++|.|+ |--||||++.-++..|.+.|+||.++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3566665 45689999999999999999999886
No 96
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=53.02 E-value=16 Score=39.93 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=24.2
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
-|--||||++..++..|...|+||.+.
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 456789999999999999999999885
No 97
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=52.38 E-value=9.4 Score=43.71 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=28.6
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+++|.|++.| ||||++.-++..|.+.|+||.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3678888665 79999999999999999999886
No 98
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=51.92 E-value=13 Score=40.94 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=29.1
Q ss_pred CccEEEEcC--CCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtG--TnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+.++|.|+| --||||++.-++..|.+.|+||.++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 457888873 3479999999999999999999887
No 99
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=50.84 E-value=8.7 Score=43.97 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=28.7
Q ss_pred ceEEEecCCC---CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 720 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 720 l~vIhVTGTn---GKgST~aml~sILr~~G~rtGl~ 752 (1255)
+++|.|++.| ||||++.-++..|...|+||.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3678888765 69999999999999999999876
No 100
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.49 E-value=8.6 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.7
Q ss_pred eEEEecCCC--CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGTK--GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|+|.|.+ ||||+..+|...+...|+++|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 678888875 79999999999999999988754
No 101
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=49.56 E-value=25 Score=41.59 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=31.2
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
-.+|.++|-+ |||||++-++..|+..|+++.+....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4688888866 59999999999999999999987754
No 102
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=49.54 E-value=15 Score=42.32 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=33.2
Q ss_pred ccEEEEcCCC---ChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISGTK---GKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtGTn---GKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
-+.|-|+||. |||+|+..+...|++.|++++.+.+..
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgq 208 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQ 208 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSH
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCc
Confidence 4679999985 999999999999999999999988764
No 103
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=49.52 E-value=18 Score=40.91 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=31.0
Q ss_pred ccceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 718 KKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 718 ~~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
.+.++|.|+|.+ |||||+..++..|...|.++.+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 346789999875 7999999999999999999877643
No 104
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=47.82 E-value=20 Score=36.94 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.4
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
.+++|.|+|-+ ||||++..+...|...|+++|.+.-
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 46899999974 7999999888889889999997754
No 105
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=47.28 E-value=17 Score=40.78 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=30.5
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+-.+|.|+|-+ |||||++.++..|...|.++.+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 44688899876 7999999999999999999887653
No 106
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=46.28 E-value=33 Score=35.40 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.4
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+-.+|+|+|-+ ||||++.++...|...|.++.+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 44689999976 8999999999999888877766543
No 107
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=44.85 E-value=49 Score=40.32 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred eEEEec-CCC---CCccHHHHHHHHHHHCCCCeEEEcC-------ccccccc----ceeeeCCeec--------------
Q psy15432 721 NVIHIS-GTK---GKGSTCAYCESILRSHGFSTGFFSS-------PHLIEVR----ERIKLNGEPI-------------- 771 (1255)
Q Consensus 721 ~vIhVT-GTn---GKgST~aml~sILr~~G~rtGl~tS-------PhL~~~~----ERI~InG~pI-------------- 771 (1255)
+.|-|| ||- |||.+++-+..+|++.|||+..|.. |.-.+.+ --+.-||..+
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~~~~~~~~~ 92 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDMD 92 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHHTSC
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhccHHhcCCcc
Q ss_pred -ChhhhhhHHHHHHHHHHHHhhc--CCCCCcHHHHHH--HHHHHhhhcC--CCCEEEEecc
Q psy15432 772 -SYDKFTKYFWTVYNALHAKRKH--AEDMPAYFKFLT--VMSFYVFVKE--KPDAVIMEVG 825 (1255)
Q Consensus 772 -s~~~f~~~~~~v~~~l~~~~~~--~~~~pt~Fe~lT--~mAf~~F~~~--~vD~aVlEVG 825 (1255)
++..=...-.-....+.+.+.. -+....+..-+| +.....-+.+ +.|++|+|.|
T Consensus 93 l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~i~e~~ 153 (550)
T 1vco_A 93 LSRGNNLTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVG 153 (550)
T ss_dssp CCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred cCCCCCeeccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhcccCCCEEEEECC
No 108
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=43.83 E-value=16 Score=41.02 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=29.7
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
...+|.|+|-+ |||||+..++..|...|.++.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45688888876 799999999999999998887764
No 109
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=43.75 E-value=18 Score=40.73 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred CccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
.+++|.|+ |--||||+++-++..|.+.|+||.+...
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34667776 5557999999999999999999988754
No 110
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=43.44 E-value=30 Score=38.74 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=31.6
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHH-CCCCeEEEcCcccccccceeeeCCeecCh
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRS-HGFSTGFFSSPHLIEVRERIKLNGEPISY 773 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~-~G~rtGl~tSPhL~~~~ERI~InG~pIs~ 773 (1255)
+++++.|+|-+|=|-|+. +..++.. .|+|+++...- .-.|.|||.++..
T Consensus 3 ~i~v~~i~G~~GaGKTTl-l~~l~~~~~~~~~aVi~~d-----~G~i~idg~~l~~ 52 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTL-LRHILNEQHGYKIAVIENE-----FGEVSVDDQLIGD 52 (318)
T ss_dssp CEEEEEEEESSSSSCHHH-HHHHHHSCCCCCEEEECSS-----CCSCCEEEEEECT
T ss_pred cccEEEEEecCCCCHHHH-HHHHHhhcCCCcEEEEEec-----CcccCccHHHHhC
Confidence 578999999886444332 3344433 58888887432 1347888988764
No 111
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=42.68 E-value=18 Score=37.18 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=29.9
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
.+++|.|+|-+ ||||++..+...|...|+++|.+.-
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 36789999974 7889888888889889999987754
No 112
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=42.67 E-value=17 Score=40.17 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=28.9
Q ss_pred ccceEEEecC--CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 718 KKLNVIHISG--TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 718 ~~l~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.+.++|.|+| --||||++.-++..|.+.|+||.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3457888874 3469999999999999999999887
No 113
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=41.94 E-value=1.4e+02 Score=35.98 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=27.6
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+-.+|+|.|-| ||||++..|..+++..|.++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 44588888877 79999999999999887776554
No 114
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=41.35 E-value=48 Score=34.27 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 106 KKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 106 ~~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++-.+|+|.|-| ||||++.+|..+|...|.++|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v 56 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence 344699999977 89999999999998767555554
No 115
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=40.71 E-value=21 Score=36.52 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=27.9
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
+++|+|.|.+ ||||++.+|...+...|+++|.+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 3688899976 79999999999999999988763
No 116
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=40.06 E-value=28 Score=39.56 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=29.4
Q ss_pred ccEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
.++|.|+ |--||||+++-++..|.+.|+||.+...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4677777 4457999999999999999999998864
No 117
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=39.97 E-value=16 Score=41.01 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=28.9
Q ss_pred ceEEEec---CCCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVT---GTnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+++|.|+ |--||||+++-++..|.+.|+||.+...
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3566666 5557999999999999999999988754
No 118
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.51 E-value=31 Score=38.63 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCccEEEEcCCCC--hhHHHHHHHHHHHHCCCCeEEEcCCcccccceeEEeCCeecCh
Q psy15432 106 KKLNVIHISGTKG--KGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISY 161 (1255)
Q Consensus 106 ~~l~vIhVtGTnG--KgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI~InG~~is~ 161 (1255)
.+++++.|+|-+| |||....+.... .|+|++++..-. -.|.|||.++..
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~-----G~i~idg~~l~~ 52 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEF-----GEVSVDDQLIGD 52 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSC-----CSCCEEEEEECT
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecC-----cccCccHHHHhC
Confidence 3578999999876 666655555432 588998875321 137788888763
No 119
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.36 E-value=35 Score=35.20 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=29.2
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+..+|+|+|-+ ||||++.++...|...|.++.+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 45689999976 8999999999999988877765533
No 120
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=38.82 E-value=55 Score=37.82 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=56.1
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEEcCcccccccceee--e--------C---CeecChhh-hhhHHHHHHHHHHHHh
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIK--L--------N---GEPISYDK-FTKYFWTVYNALHAKR 791 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI~--I--------n---G~pIs~~~-f~~~~~~v~~~l~~~~ 791 (1255)
.|-.||||++..++..|...|+||.+...|. -+....+. + . +..+..+. +..+...+...+...-
T Consensus 10 kGG~GKTt~a~~la~~la~~g~~vllvd~~~-~~l~~~~~~~~~~~~~~v~~~L~~~eid~~~~~~~~~~~~~~~~~~~l 88 (374)
T 3igf_A 10 KSGVARTKIAIAAAKLLASQGKRVLLAGLAE-PVLPLLLEQTLTPDPQQIAPNLEVVQFQSSVLLERNWEEVKKLEAQYL 88 (374)
T ss_dssp SBHHHHHHHHHHHHHHHHHTTCCEEEEECSC-SHHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCeEEEeCCC-CChHHhhCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHhhc
Confidence 3456799999999999999999999887631 12111110 0 1 11222222 2233333333333321
Q ss_pred h----------cCCCCCcHHHHHHHHHHHhhh-cCCCCEEEEecc
Q psy15432 792 K----------HAEDMPAYFKFLTVMSFYVFV-KEKPDAVIMEVG 825 (1255)
Q Consensus 792 ~----------~~~~~pt~Fe~lT~mAf~~F~-~~~vD~aVlEVG 825 (1255)
. +....|..-|++.+..+.-+. ....|++|+-+.
T Consensus 89 ~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtp 133 (374)
T 3igf_A 89 RTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGT 133 (374)
T ss_dssp SSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred ccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 1 123357777777777666444 457899999873
No 121
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.23 E-value=36 Score=35.30 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=29.2
Q ss_pred EEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCCcccccceeE
Q psy15432 110 VIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERI 152 (1255)
Q Consensus 110 vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSPhL~~~rERI 152 (1255)
+|+|.|-| ||||+..++...++..|..++-|....+...+.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~i 47 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRI 47 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceE
Confidence 46677766 59999999999998778665544443443444444
No 122
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=35.39 E-value=1.2e+02 Score=36.82 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=29.5
Q ss_pred eEEEec-C---CCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHIS-G---TKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVT-G---TnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+.|-|| | .-|||.+++-+..+|++.||++..|..
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~ 41 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL 41 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence 456666 5 469999999999999999999999876
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.22 E-value=23 Score=40.17 Aligned_cols=36 Identities=39% Similarity=0.449 Sum_probs=29.1
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+-.+|.+.|-| |||||++.|+..++..|.++.+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 34578888766 6999999999999998888776654
No 124
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=35.21 E-value=56 Score=33.70 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=27.4
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEE
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~ 752 (1255)
+-.+|+|.|-| ||||++.+|..+|...|.++|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v 56 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence 45789999966 89999999999999777555554
No 125
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=34.84 E-value=55 Score=38.54 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.4
Q ss_pred ccEEEEcCC--CChhHHHHHHHHHHHHC-CCCeEEEcC
Q psy15432 108 LNVIHISGT--KGKGSTCAYCESILRSH-GFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGT--nGKgST~a~l~sIL~~~-G~k~Gl~tS 142 (1255)
.++|.|+|. .|||||++-|+..|... |++|.++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457777764 58999999999999998 999998754
No 126
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=34.29 E-value=28 Score=38.64 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=27.3
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|+|||. .||||++.+++..|...|+++.++..-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D 42 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence 368999996 589999999999998877766555433
No 127
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=34.13 E-value=38 Score=37.63 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCccEEEEcC----CCChhHHHHHHHHHHHHCCCCeEEE-cCCc
Q psy15432 106 KKLNVIHISG----TKGKGSTCAYCESILRSHGFSTGFF-SSPH 144 (1255)
Q Consensus 106 ~~l~vIhVtG----TnGKgST~a~l~sIL~~~G~k~Gl~-tSPh 144 (1255)
...+.|-||| +=|||-|++-+..+|++.|+++-.. --|.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence 4679999999 6899999999999999999998764 2444
No 128
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=34.05 E-value=86 Score=36.21 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=25.0
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
|--||||+++-++..|.+.|+||-+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4457999999999999999999998876
No 129
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=33.54 E-value=20 Score=38.50 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=26.2
Q ss_pred eEEEe--cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHI--SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhV--TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.| -|--||||++..++..|...|+||.+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 34444 445689999999999999999999886
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=33.48 E-value=21 Score=40.45 Aligned_cols=36 Identities=39% Similarity=0.449 Sum_probs=28.4
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+-.+|++.|-| |||||+..++..++..|.++.+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 34577777755 7999999999999998887766543
No 131
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=32.78 E-value=15 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.4
Q ss_pred EEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 111 IHISGTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 111 IhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
.|..| .||||.+..|...|...|++++++.-|.
T Consensus 6 ~G~~G-sGKsTl~~~L~~~l~~~g~~v~~~~~~~ 38 (214)
T 1gtv_A 6 EGVDG-AGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (214)
T ss_dssp EEEEE-EEHHHHHHHHHHHHHEEEEEEEEEESSE
T ss_pred EcCCC-CCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 34444 3999999999999998888888765543
No 132
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=32.12 E-value=35 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.015 Sum_probs=27.2
Q ss_pred cEEEEc---CCCChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.|.|+ |--||||+++-++..|.+.|+||.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344455 556899999999999999999999974
No 133
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=32.02 E-value=23 Score=38.57 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=26.7
Q ss_pred eEEEec--CCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVT--GTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+ |--||||++.-++..|...|+||.+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 455554 45689999999999999999999886
No 134
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=31.85 E-value=33 Score=37.87 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=30.2
Q ss_pred CCccEEEEcC----CCChhHHHHHHHHHHHHCCCCeEE
Q psy15432 106 KKLNVIHISG----TKGKGSTCAYCESILRSHGFSTGF 139 (1255)
Q Consensus 106 ~~l~vIhVtG----TnGKgST~a~l~sIL~~~G~k~Gl 139 (1255)
.+++.|-||| .=|||-|++-+..+|++.|+++-.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 4678999998 569999999999999999999755
No 135
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=31.73 E-value=1.6e+02 Score=35.72 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=26.1
Q ss_pred EEEEc---CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 110 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 110 vIhVt---GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.|.|+ |--||||+++-++..|.+.|.+|.++
T Consensus 328 ~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 328 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 44454 45699999999999999999999997
No 136
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=30.42 E-value=1.8e+02 Score=35.24 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=27.7
Q ss_pred cEEEEc--CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 109 NVIHIS--GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 109 ~vIhVt--GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+++-++ |--||||+++-++..|.+.|+||.+...
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 455555 4578999999999999999999988654
No 137
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=30.30 E-value=22 Score=41.88 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=28.1
Q ss_pred eEEEecC--CCCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 721 NVIHISG--TKGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 721 ~vIhVTG--TnGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
.+|.|+| -.|||||+.-++..|...|+++.+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4666666 358999999999999999999988764
No 138
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=30.18 E-value=54 Score=36.57 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.6
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+-.+|++.|-| |||||++.++..++..+.++.+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 34588888876 8999999999999988777666543
No 139
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=29.95 E-value=33 Score=38.62 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=26.7
Q ss_pred EEEec---CCCCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 722 VIHIS---GTKGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 722 vIhVT---GTnGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+|.|+ |--||||+++.++..|.+.|+||.+..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44444 556899999999999999999999874
No 140
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=29.95 E-value=36 Score=37.81 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.1
Q ss_pred ccceEEEecC----CCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 718 KKLNVIHISG----TKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 718 ~~l~vIhVTG----TnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
...+.|-||| +=|||-|++-+..+|++.|+++-..
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~ 59 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSI 59 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceee
Confidence 4568999999 6899999999999999999998664
No 141
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=29.27 E-value=40 Score=34.96 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=28.7
Q ss_pred EEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcCccccccccee
Q psy15432 722 VIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERI 764 (1255)
Q Consensus 722 vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tSPhL~~~~ERI 764 (1255)
+|+|.|-| ||||+..++...++..|...+-|....+...+.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~i 47 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRI 47 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceE
Confidence 45666655 59999999999999778665544433333344444
No 142
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=29.13 E-value=71 Score=38.45 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=29.2
Q ss_pred CccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+.++|.|+|. .|||||+.-|+..|...|+++.+.+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3568888875 47999999999999999999988753
No 143
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=28.84 E-value=23 Score=37.04 Aligned_cols=26 Identities=23% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
|--||||++.-++..|.+.|+||.++
T Consensus 9 GGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 44579999999999999999999876
No 144
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=28.74 E-value=47 Score=33.45 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.6
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+-.+|.|+|- .||||.+..++..|...|+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3467888885 6899999999999999998876553
No 145
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=28.47 E-value=47 Score=33.06 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.8
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
++|.|+|. .||||.+..|+.-|...|+++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 45666665 699999999999999888877655
No 146
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=28.25 E-value=34 Score=38.29 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=28.2
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
-.+|.|.|-| ||||+++.++..++..|.++.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 4578888766 6999999999999988877766554
No 147
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=28.10 E-value=94 Score=34.51 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=29.8
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
-.+|.++|-+ ||||++..++..+...|.++.+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4578887754 79999999999999999999887653
No 148
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=27.69 E-value=68 Score=36.16 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHHhcCCccCCCCccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 92 VQYLGHLNITLDDIKKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 92 ~~~L~~Lg~~~~~~~~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+.++..+.... .+..+|+|+|-+ ||||+...+...+...|.++.++.
T Consensus 43 ~~~~~~l~~~~---~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYC---GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGC---SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCccc---CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34444444322 456789999876 799999999999998999988764
No 149
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=26.90 E-value=45 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.6
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCeEE
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFSTGF 751 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rtGl 751 (1255)
+|.|+|. .||||.+.+++..|...|+++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5778884 68999999999999999987743
No 150
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=26.84 E-value=86 Score=35.48 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCccCCCCccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 91 VVQYLGHLNITLDDIKKLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 91 ~~~~L~~Lg~~~~~~~~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.++++..+.... .+..+|.|+|. .||||++.-+...|...|++++++.
T Consensus 65 ~~~~~~~~~~~~---~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 65 AQQLLLRLLPDS---GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp HHHHHHHHGGGC---CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhHhhc---CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 444555553221 35578888885 4799999999999999999998874
No 151
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=26.71 E-value=32 Score=37.94 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=29.7
Q ss_pred ccceEEEecC----CCCCccHHHHHHHHHHHCCCCeEE
Q psy15432 718 KKLNVIHISG----TKGKGSTCAYCESILRSHGFSTGF 751 (1255)
Q Consensus 718 ~~l~vIhVTG----TnGKgST~aml~sILr~~G~rtGl 751 (1255)
.+.+.|-||| +=|||-|++-+..+|++.|+++-.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 4578999998 459999999999999999999844
No 152
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=26.58 E-value=77 Score=31.81 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.4
Q ss_pred CccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 107 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 107 ~l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
+-.+|.++|- .||||.+..++..|...|+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 3457888886 5899999999999999898876653
No 153
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=26.44 E-value=33 Score=38.45 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=26.9
Q ss_pred ceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..+|+|.|-| ||||+...++..++..|.++.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 4567777655 7999999999999988777666543
No 154
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.30 E-value=40 Score=33.63 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.0
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
++|.|+|. .||||.+..|+.-|...|+.+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 45667774 699999999999999888877655
No 155
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=26.26 E-value=68 Score=36.85 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.6
Q ss_pred CccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 107 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 107 ~l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
+-.+|.+.|-| |||||++.|+..++..+.++.+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 34588888877 8999999999999987777666543
No 156
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=26.16 E-value=67 Score=32.21 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.5
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeEE
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTGF 139 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl 139 (1255)
+|.|+|. .||||.+.+++..|...|+++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5778884 68999999999999999987743
No 157
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=26.00 E-value=20 Score=37.48 Aligned_cols=27 Identities=22% Similarity=0.033 Sum_probs=23.7
Q ss_pred cCCCCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 726 SGTKGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 726 TGTnGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.|--||||++.-++..|...|+||.+.
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 445579999999999999999999876
No 158
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=25.99 E-value=47 Score=36.79 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=26.7
Q ss_pred ccEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
-.+|+|||- .||||++.+++..|...|+++..+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~ 41 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEG 41 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeec
Confidence 368999996 48999999999999877776655543
No 159
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.88 E-value=38 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=28.9
Q ss_pred ccEEEEcCCC--ChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 108 LNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 108 l~vIhVtGTn--GKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
-.+|.|+|-+ |||||+..++..|...|.++.+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4577777654 7999999999999999999888754
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.81 E-value=42 Score=35.42 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=27.5
Q ss_pred eEEEecCCCCCccHHHHHHHHHHHC--CCCeEEE
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRSH--GFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~~--G~rtGl~ 752 (1255)
..|+|-+-+|||.|++-+.-.||++ |+||.++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3577777789999999999999975 8999988
No 161
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=25.49 E-value=55 Score=36.53 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=27.6
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+-.+|++.|-| |||||+..++..++..+.++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34578888766 799999999999998877665554
No 162
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=25.46 E-value=1e+02 Score=34.69 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCccCCCCccEEEE----cCCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 90 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 90 ~~~~~L~~Lg~~~~~~~~l~vIhV----tGTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
..|+++-+.|........+|||.| .|-.|||-++.+|...|+. +++|..+-
T Consensus 18 ~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~ilsR 72 (315)
T 4ehx_A 18 NFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCILSR 72 (315)
T ss_dssp HHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEEEC
T ss_pred HHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEEee
Confidence 567777777755433356889988 6889999999999999964 45666543
No 163
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.02 E-value=64 Score=35.90 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=29.5
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcCc
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 755 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tSP 755 (1255)
..+|.++|- .||||++..++..|...|.++.+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 457777775 479999999999999999999877543
No 164
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=23.74 E-value=36 Score=40.09 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.5
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
..+|.|+|- .|||||+..++..|...|.++.+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 457777664 48999999999999999999887654
No 165
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=23.66 E-value=1.1e+02 Score=32.60 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred eEEEecCCCCCccHHHHHHHHHHH--CCCCeEEEcCcc----cccccceeeeCCeecChhhhhhHHHHHHHHHHHHhhcC
Q psy15432 721 NVIHISGTKGKGSTCAYCESILRS--HGFSTGFFSSPH----LIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHA 794 (1255)
Q Consensus 721 ~vIhVTGTnGKgST~aml~sILr~--~G~rtGl~tSPh----L~~~~ERI~InG~pIs~~~f~~~~~~v~~~l~~~~~~~ 794 (1255)
.++-|||.-|+|-|++++..+.+. +|.++.+++..- ...+.+|+ |.......+ ....+++..+.+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl---G~~~~~~~~-~~~~~i~~~i~~~~--- 85 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT---GTSLPSVEV-ESAPEILNYIMSNS--- 85 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC---CCSSCCEEE-SSTHHHHHHHHSTT---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc---CCCcccccc-CCHHHHHHHHHHHh---
Q ss_pred CCCCcHHHHHHHHHHHhhhcCCCCEEEE
Q psy15432 795 EDMPAYFKFLTVMSFYVFVKEKPDAVIM 822 (1255)
Q Consensus 795 ~~~pt~Fe~lT~mAf~~F~~~~vD~aVl 822 (1255)
...++|++||
T Consensus 86 ------------------~~~~~dvViI 95 (223)
T 2b8t_A 86 ------------------FNDETKVIGI 95 (223)
T ss_dssp ------------------SCTTCCEEEE
T ss_pred ------------------hCCCCCEEEE
No 166
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=23.64 E-value=82 Score=37.04 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.1
Q ss_pred ceEEEecCC--CCCccHHHHHHHHHHHC-CCCeEEEcC
Q psy15432 720 LNVIHISGT--KGKGSTCAYCESILRSH-GFSTGFFSS 754 (1255)
Q Consensus 720 l~vIhVTGT--nGKgST~aml~sILr~~-G~rtGl~tS 754 (1255)
.++|.|+|. .|||||+.-|+..|... |+|+.+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 467777763 58999999999999998 999988754
No 167
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=23.47 E-value=69 Score=36.13 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.4
Q ss_pred ccceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 718 KKLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 718 ~~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
.+..+|+|+|-+ ||||+...+...++..|.++.+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456789999976 799999999999999999988764
No 168
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.73 E-value=83 Score=31.33 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=24.8
Q ss_pred cEEEEcCCC--ChhHHHHHHHHHHHHCCCCeE
Q psy15432 109 NVIHISGTK--GKGSTCAYCESILRSHGFSTG 138 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~sIL~~~G~k~G 138 (1255)
.+|.++|.. ||||++.+++..|...|+++-
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 578888875 899999999999988887654
No 169
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=22.64 E-value=34 Score=35.64 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.8
Q ss_pred CChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 117 KGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 117 nGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
.||||-+.+|..-|++.|+++-+..-|.
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5999999999999999999987776664
No 170
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=22.47 E-value=62 Score=32.96 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.8
Q ss_pred eEEEecCC--CCCccHHHHHHHHHHHCCCCeEEE
Q psy15432 721 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFF 752 (1255)
Q Consensus 721 ~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~ 752 (1255)
.+|.|+|- .||||.+.+|+.-|...|+.+-.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 47888884 799999999999999999887544
No 171
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.11 E-value=79 Score=37.21 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=28.4
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEcCC
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSSP 143 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~tSP 143 (1255)
.+|.|+|- .|||||+.-++..|...|+++.++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46666653 489999999999999999999887653
No 172
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=22.11 E-value=60 Score=38.10 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=26.2
Q ss_pred ccEEEEcCCCChhHHHHHHHHHHHHCCCCeEEEcCCc
Q psy15432 108 LNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPH 144 (1255)
Q Consensus 108 l~vIhVtGTnGKgST~a~l~sIL~~~G~k~Gl~tSPh 144 (1255)
+-+.+-+|| |||++...+...|.+.|.+..+..+|.
T Consensus 48 ~li~G~aGT-GKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 48 VTINGPAGT-GATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEECCTTS-CHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 446666777 999999999888888887444444443
No 173
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=21.99 E-value=84 Score=35.37 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCcccccccceEEEe----cCCCCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 702 QVVQYLGHLNITLDDIKKLNVIHI----SGTKGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 702 ~~~~~L~~Lg~~~~~~~~l~vIhV----TGTnGKgST~aml~sILr~~G~rtGl~t 753 (1255)
..+.+|-+.|........+|||.| .|-.|||-++.+|...|+. +++|..+
T Consensus 18 ~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~ils 71 (315)
T 4ehx_A 18 NFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCILS 71 (315)
T ss_dssp HHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEEE
T ss_pred HHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEEe
Confidence 445555555543322356889988 7999999999999999975 4566554
No 174
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=21.96 E-value=91 Score=35.31 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=29.6
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~t 753 (1255)
+.++|.|+|. .||||++.-+...|...|++++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4578899985 5799999999999999999998874
No 175
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=21.84 E-value=72 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEcCC--CChhHHHHHHHHHHHHCCCCeE
Q psy15432 110 VIHISGT--KGKGSTCAYCESILRSHGFSTG 138 (1255)
Q Consensus 110 vIhVtGT--nGKgST~a~l~sIL~~~G~k~G 138 (1255)
+|.|+|. .||||.+.+++.-|...|+.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5677774 5899999999999988888654
No 176
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.72 E-value=70 Score=36.74 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred cceEEEecCCC--CCccHHHHHHHHHHHCCCCeEEEc
Q psy15432 719 KLNVIHISGTK--GKGSTCAYCESILRSHGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTn--GKgST~aml~sILr~~G~rtGl~t 753 (1255)
+-.+|++.|-| |||||+..|+..++..|.++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 44678888866 799999999999998776665554
No 177
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=21.44 E-value=61 Score=36.77 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=25.0
Q ss_pred CCCChhHHHHHHHHHHHHCCCCeEEEcC
Q psy15432 115 GTKGKGSTCAYCESILRSHGFSTGFFSS 142 (1255)
Q Consensus 115 GTnGKgST~a~l~sIL~~~G~k~Gl~tS 142 (1255)
|--||||+++-++..|.+.|+||.+...
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 6678999999999999999999988764
No 178
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=21.23 E-value=1e+02 Score=31.34 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.1
Q ss_pred cEEEEcCC--CChhHHHHHHHHHHHHCCCCeEEEc
Q psy15432 109 NVIHISGT--KGKGSTCAYCESILRSHGFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtGT--nGKgST~a~l~sIL~~~G~k~Gl~t 141 (1255)
.+|.|+|- .||||.+..|+.-|...|+.+-.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 47888875 6999999999999998898875443
No 179
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=21.05 E-value=1.1e+02 Score=36.77 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHHhcCCccCCCCccEEEEcCC------CChhHHHHHHHHHHHHCCCCeEEE
Q psy15432 93 QYLGHLNITLDDIKKLNVIHISGT------KGKGSTCAYCESILRSHGFSTGFF 140 (1255)
Q Consensus 93 ~~L~~Lg~~~~~~~~l~vIhVtGT------nGKgST~a~l~sIL~~~G~k~Gl~ 140 (1255)
.++.++... ++.++|.||.+ -|||||+.=|+..|.+.|.||-+.
T Consensus 46 ~~l~~~~~~----~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 46 DVYRRLKDK----PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp HHHHHTTTS----CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHhhhhhcc----CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 345555433 35689999987 479999999999999999999775
No 180
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=21.00 E-value=33 Score=35.67 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCCCccHHHHHHHHHHHCCCCeEEEcCcc
Q psy15432 728 TKGKGSTCAYCESILRSHGFSTGFFSSPH 756 (1255)
Q Consensus 728 TnGKgST~aml~sILr~~G~rtGl~tSPh 756 (1255)
-.||||-+.+|+.-|++.|+++-+..-|.
T Consensus 10 GsGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 10 GSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 36999999999999999999987776664
No 181
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=20.97 E-value=92 Score=37.45 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=29.1
Q ss_pred cceEEEecCC--CCCccHHHHHHHHHHHCCCCeEEEcC
Q psy15432 719 KLNVIHISGT--KGKGSTCAYCESILRSHGFSTGFFSS 754 (1255)
Q Consensus 719 ~l~vIhVTGT--nGKgST~aml~sILr~~G~rtGl~tS 754 (1255)
+.++|.|+|. .|||||+.-|+..|...|+++.+.+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3567888875 57999999999999999999988754
No 182
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=20.83 E-value=89 Score=32.49 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=29.0
Q ss_pred cceEEEecCCCCCccHHHHHHHHHHH--CCCCeEEEc
Q psy15432 719 KLNVIHISGTKGKGSTCAYCESILRS--HGFSTGFFS 753 (1255)
Q Consensus 719 ~l~vIhVTGTnGKgST~aml~sILr~--~G~rtGl~t 753 (1255)
+-+++-++|.-|+|-|++++..+.+. +|+++.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999998888888888877775 799999886
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=20.59 E-value=63 Score=34.09 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=26.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHC--CCCeEEEc
Q psy15432 109 NVIHISGTKGKGSTCAYCESILRSH--GFSTGFFS 141 (1255)
Q Consensus 109 ~vIhVtGTnGKgST~a~l~sIL~~~--G~k~Gl~t 141 (1255)
..|+|-+-||||.|++-+.-.++++ |+||.++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566767788999999999999874 79999983
No 184
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=20.49 E-value=48 Score=33.78 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.7
Q ss_pred cEEEEcCCC--ChhHHHHHHHH
Q psy15432 109 NVIHISGTK--GKGSTCAYCES 128 (1255)
Q Consensus 109 ~vIhVtGTn--GKgST~a~l~s 128 (1255)
.+|+|+|.+ ||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 478888875 89999999887
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=20.03 E-value=58 Score=32.47 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEecCC--CCCccHHHHHHHHHHHCCCCeE
Q psy15432 722 VIHISGT--KGKGSTCAYCESILRSHGFSTG 750 (1255)
Q Consensus 722 vIhVTGT--nGKgST~aml~sILr~~G~rtG 750 (1255)
+|.|+|. .||||.+.+++.-|...|+.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4667774 5999999999999998888653
No 186
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=20.00 E-value=90 Score=37.38 Aligned_cols=94 Identities=13% Similarity=0.204 Sum_probs=53.8
Q ss_pred HHHhhhhhhccCCCEEEEeeccCCccccccccC--------CccEEEEc-CC-------CcchhhhcCCCH-------HH
Q psy15432 193 TVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP--------NTAVVGIT-SL-------GYDHTAVLGNTI-------EE 249 (1255)
Q Consensus 193 t~~A~~~F~~~~vD~aVlEvG~GGr~D~tnii~--------~P~v~vIT-nI-------g~DHld~lG~Tl-------e~ 249 (1255)
|-+|+.+ .||+|-|.|-|--+-+-.|++ +|+++||. .| |..--++..+.+ .+
T Consensus 274 tk~ALkl-----aDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~N 348 (543)
T 3do6_A 274 TKMAMKL-----SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKN 348 (543)
T ss_dssp HHHHHHH-----CSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHH
T ss_pred HHHHHhc-----cCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHH
Confidence 4555554 399999999994433222221 57766553 22 111112222233 34
Q ss_pred HHHHHHcccCCCceeeeccC----CCchHHHHHHHhhhccCceEEE
Q psy15432 250 ITMQKAGIMKPNCIAVTSAN----QRGPCKQILLETSRALNCVLLE 291 (1255)
Q Consensus 250 Ia~~KagI~k~g~~~v~~~~----q~~e~~~vl~~~a~~~~~~l~~ 291 (1255)
+.++=..+-+.|.|+|+..| +.++-.+.+++.|++.++....
T Consensus 349 L~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~ 394 (543)
T 3do6_A 349 LRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAV 394 (543)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44555555578999877644 2244567889999998886543
Done!