RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15432
(1255 letters)
>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase.
Length = 530
Score = 269 bits (691), Expect = 5e-79
Identities = 117/282 (41%), Positives = 162/282 (57%), Gaps = 12/282 (4%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
SY +A+ L++L + K R DP Q D + YL L + + I +L VIH
Sbjct: 15 SYEEALDALSSLIT-------KKSRADP-SNPGDQFDLLFDYLKILELE-EAISRLKVIH 65
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
++GTKGKGSTC + ESILR+ GF TG F+SPHLI+VRER +L+G IS +KF +YFW +
Sbjct: 66 VAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCW 125
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
+ L K MPAYF+FLT+++F +F E+ D I+EVG+GGR D TN++ V GI
Sbjct: 126 DRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGI 185
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 292
TSLGYDH +LG+T+ +I +KAGI KP A T Q ++L E + L L
Sbjct: 186 TSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVPLQVV 244
Query: 293 PSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 334
+ +Y G L + Q +N LA+ L W+ R
Sbjct: 245 EPLDSYGLSGLKLGLAGEH--QYLNAGLAVALCSTWLQRTGH 284
Score = 269 bits (691), Expect = 5e-79
Identities = 117/282 (41%), Positives = 162/282 (57%), Gaps = 12/282 (4%)
Query: 665 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 724
SY +A+ L++L + K R DP Q D + YL L + + I +L VIH
Sbjct: 15 SYEEALDALSSLIT-------KKSRADP-SNPGDQFDLLFDYLKILELE-EAISRLKVIH 65
Query: 725 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 784
++GTKGKGSTC + ESILR+ GF TG F+SPHLI+VRER +L+G IS +KF +YFW +
Sbjct: 66 VAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCW 125
Query: 785 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 844
+ L K MPAYF+FLT+++F +F E+ D I+EVG+GGR D TN++ V GI
Sbjct: 126 DRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGI 185
Query: 845 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEA 904
TSLGYDH +LG+T+ +I +KAGI KP A T Q ++L E + L L
Sbjct: 186 TSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVP-QPDEAMRVLEERASELGVPLQVV 244
Query: 905 PSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNK 946
+ +Y G L + Q +N LA+ L W+ R
Sbjct: 245 EPLDSYGLSGLKLGLAGEH--QYLNAGLAVALCSTWLQRTGH 284
Score = 82.0 bits (203), Expect = 8e-16
Identities = 60/275 (21%), Positives = 95/275 (34%), Gaps = 81/275 (29%)
Query: 409 RGIKACVWPGRVQVI--------RKNNFKYFLDGAHTTDSIELCAKWF---LRKSEAEAS 457
+G+ GR QV+ + ++LDGAH+ +S+E CA+WF ++ E
Sbjct: 302 KGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPG 361
Query: 458 SSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-----QSNQFEYILVTP 512
S ++S+ + ++IL+FN RDP LL PL F+ L P
Sbjct: 362 SGYGPHGGGGKSEDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVP 421
Query: 513 NI-----LTNESSPDT-------QYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGG 560
NI + + D Q+ R +
Sbjct: 422 NISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESL-------------------------- 455
Query: 561 GGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQ-----RSKVVEFSS 615
+ ++G + SS ++ NS V +L R E S
Sbjct: 456 --IRGKAGAPADAVCEESASSGL-NDGKSDENSA-----VFPSLPLAIKWLRDCARENPS 507
Query: 616 VLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVL 650
+ + +LVTGSLHLVG L +L
Sbjct: 508 L--------------RFQVLVTGSLHLVGDVLRLL 528
Score = 67.4 bits (165), Expect = 2e-11
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 1021 RGIKACVWPGRVQVI--------RKNNFKYFLDGAHTTDSIELCAKWF------------ 1060
+G+ GR QV+ + ++LDGAH+ +S+E CA+WF
Sbjct: 302 KGLSTASLQGRAQVVPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPG 361
Query: 1061 ---LRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLL-----QSNQFEYILVT 1112
+ + ++IL+FN RDP LL PL F+ L
Sbjct: 362 SGYGPHGGGGKSEDTESNKIS-EQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFV 420
Query: 1113 PNI 1115
PNI
Sbjct: 421 PNI 423
Score = 61.2 bits (149), Expect = 2e-09
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 1136 QSINISLAIQLAYLWMFRMNKSAELKRNQSS-LPMGPHFEIDPKTYRGIKACVWPGRVQV 1194
Q +N LA+ L W+ R Q+ LP F +G+ GR QV
Sbjct: 264 QYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLP--EQF------IKGLSTASLQGRAQV 315
Query: 1195 I--------RKNNFKYFLDGAHTTDSIELCAKWF---LRKSEAEASSSRSVSSCPLDPTQ 1243
+ + ++LDGAH+ +S+E CA+WF ++ E S
Sbjct: 316 VPDSYINSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSED 375
Query: 1244 SKSSNVIQRILV 1255
++S+ + ++IL+
Sbjct: 376 TESNKISEQILL 387
>gnl|CDD|233440 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase.
This model represents the FolC family of folate pathway
proteins. Most examples are bifunctional, active as both
folylpolyglutamate synthetase (EC 6.3.2.17) and
dihydrofolate synthetase (EC 6.3.2.12). The two
activities are similar - ATP + glutamate +
dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP +
orthophosphate + dihydrofolate or
tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC
gene of E. coli suggests that both activities belong to
the same active site. Because some examples are
monofunctional (and these cannot be separated
phylogenetically), the model is treated as subfamily, not
equivalog [Biosynthesis of cofactors, prosthetic groups,
and carriers, Folic acid].
Length = 398
Score = 247 bits (634), Expect = 1e-72
Identities = 121/448 (27%), Positives = 183/448 (40%), Gaps = 85/448 (18%)
Query: 699 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 758
++ ++++ LG+ VIH++GT GKGSTCA+ ESILR+ G+ G F+SPHL+
Sbjct: 3 RMKKLLEALGNP------QDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLV 56
Query: 759 EVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 818
ERI++NGEPIS ++ + F V L K P YF+ LT+++F F + + D
Sbjct: 57 SFNERIRINGEPISDEELAQAFEQVRPIL----KKLSQQPTYFELLTLLAFLYFAQAQVD 112
Query: 819 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 878
++EVG+GGR D TN+I V ITS+G DHT +LG+T+EEI +KAGI+K VT
Sbjct: 113 VAVLEVGLGGRLDATNVIE-PLVSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVT 171
Query: 879 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 938
Q +L + ++ L NY + + L
Sbjct: 172 -GPQEPEALNVLKKKAQEKGAPLFVVGRDFNY-SETDENYLSFSGANLFLEPLALSLLGD 229
Query: 939 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 998
N A L L++ E G Q + SE +
Sbjct: 230 HQ--AEN--AAL------------------------ALAALEVLGKQNSILLSE----EA 257
Query: 999 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 1058
G +++ G EI + ++N LDGAH S E A+
Sbjct: 258 IRKGLANTIWPG-RLEI-------------------LSEDNPNILLDGAHNPHSAEALAE 297
Query: 1059 WFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP----- 1113
WF + + IL+F ++D +L+PL E +
Sbjct: 298 WF-----KKRFNGRPI-------ILLFGALADKDAAAMLAPLKPVLDKEVFVTPFDYPRA 345
Query: 1114 ---NILTNEIRWRGQPLDEDWKSTVQSI 1138
L G EDW+ +
Sbjct: 346 DDAADLAAFAETFGGETVEDWREALALA 373
Score = 240 bits (614), Expect = 5e-70
Identities = 116/427 (27%), Positives = 177/427 (41%), Gaps = 88/427 (20%)
Query: 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 146
++ ++++ LG+ VIH++GT GKGSTCA+ ESILR+ G+ G F+SPHL+
Sbjct: 3 RMKKLLEALGNP------QDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLV 56
Query: 147 EVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPD 206
ERI++NGEPIS ++ + F V L K P YF+ LT+++F F + + D
Sbjct: 57 SFNERIRINGEPISDEELAQAFEQVRPIL----KKLSQQPTYFELLTLLAFLYFAQAQVD 112
Query: 207 AVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVT 266
++EVG+GGR D TN+I V ITS+G DHT +LG+T+EEI +KAGI+K VT
Sbjct: 113 VAVLEVGLGGRLDATNVIE-PLVSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVT 171
Query: 267 SANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAY 326
Q +L + ++ L NY + + L
Sbjct: 172 -GPQEPEALNVLKKKAQEKGAPLFVVGRDFNY-SETDENYLSFSGANLFLEPLALSLLGD 229
Query: 327 LWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQG 386
N A L L++ E G Q + SE +
Sbjct: 230 HQ--AEN--AAL------------------------ALAALEVLGKQNSILLSE----EA 257
Query: 387 HLTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAK 446
G +++ G EI + ++N LDGAH S E A+
Sbjct: 258 IRKGLANTIWPG-RLEI-------------------LSEDNPNILLDGAHNPHSAEALAE 297
Query: 447 WFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFE 506
WF ++ IL+F ++D +L+PL E
Sbjct: 298 WFKKRFNGR-----------------------PIILLFGALADKDAAAMLAPLKPVLDKE 334
Query: 507 YILVTPN 513
+ +
Sbjct: 335 VFVTPFD 341
Score = 58.8 bits (143), Expect = 9e-09
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 1181 RGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
+G+ +WPGR++++ ++N LDGAH S E A+WF
Sbjct: 260 KGLANTIWPGRLEILSEDNPNILLDGAHNPHSAEALAEWF 299
Score = 34.2 bits (79), Expect = 0.45
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 626 LDPSKEYHILVTGSLHLVGAFLNVL 650
+ S E ILVTGSL+LVG +L
Sbjct: 374 KEASAEDDILVTGSLYLVGEVRKLL 398
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 237 bits (608), Expect = 8e-69
Identities = 88/240 (36%), Positives = 123/240 (51%), Gaps = 16/240 (6%)
Query: 90 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR 149
++++ LG+ K VIH++GT GKGSTCA+ ESILR G+ G ++SPHL+
Sbjct: 32 RLLERLGNPQ------KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFN 85
Query: 150 ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVI 209
ERI++NGEPIS ++ F V A YF+ LT M+F F + K D I
Sbjct: 86 ERIRINGEPISDEELAAAFERVEE---AAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAI 142
Query: 210 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSAN 269
+EVG+GGR D TN+I V ITS+G DHTA LG+T+E I +KAGI+K AV
Sbjct: 143 LEVGLGGRLDATNVIEP-DVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQ 201
Query: 270 QRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWM 329
Q ++ E + L L +L ++ + Q L + L L
Sbjct: 202 QPPEALNVIAERAEELGAPL----FVLGPDFQVLEEGNGFSF--QGGGGLLDLPLPLLGG 255
Score = 237 bits (608), Expect = 8e-69
Identities = 88/240 (36%), Positives = 123/240 (51%), Gaps = 16/240 (6%)
Query: 702 QVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVR 761
++++ LG+ K VIH++GT GKGSTCA+ ESILR G+ G ++SPHL+
Sbjct: 32 RLLERLGNPQ------KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFN 85
Query: 762 ERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVI 821
ERI++NGEPIS ++ F V A YF+ LT M+F F + K D I
Sbjct: 86 ERIRINGEPISDEELAAAFERVEE---AAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAI 142
Query: 822 MEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSAN 881
+EVG+GGR D TN+I V ITS+G DHTA LG+T+E I +KAGI+K AV
Sbjct: 143 LEVGLGGRLDATNVIEP-DVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQ 201
Query: 882 QRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLWM 941
Q ++ E + L L +L ++ + Q L + L L
Sbjct: 202 QPPEALNVIAERAEELGAPL----FVLGPDFQVLEEGNGFSF--QGGGGLLDLPLPLLGG 255
Score = 53.4 bits (129), Expect = 5e-07
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 1013 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPT 1071
EI + R G+ WPGR++ + +N LDGAH + A+ K+ P
Sbjct: 274 KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNPHAARALAETL--KTLFNDRPR 330
Query: 1072 QSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 1113
LVF + ++D +L+ LL + I TP
Sbjct: 331 ---------LTLVFGMLKDKDIAGMLAALLP--IVDEIYTTP 361
Score = 45.7 bits (109), Expect = 1e-04
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 26/113 (23%)
Query: 401 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSS 459
EI + R G+ WPGR++ + +N LDGAH + A+ K+
Sbjct: 274 KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNPHAARALAETL--KTLFNDRP- 329
Query: 460 RSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 512
+ LVF + ++D +L+ LL + I TP
Sbjct: 330 -------------------RLTLVFGMLKDKDIAGMLAALLP--IVDEIYTTP 361
Score = 43.4 bits (103), Expect = 6e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 1173 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
EI + R G+ WPGR++ + +N LDGAH + A+
Sbjct: 274 KEISEEAIRKGLANVDWPGRLERLSENP-LILLDGAHNPHAARALAETL 321
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase.
Length = 510
Score = 140 bits (354), Expect = 8e-35
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKF 164
K +H++GTKGKGST A+ +ILR+ G+S G ++SPHL +RERI + G+P+S +
Sbjct: 74 KFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTL 133
Query: 165 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
F + L + +F+ LT ++F +F +E D ++E G+GG D TN+I
Sbjct: 134 NDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVI 193
Query: 225 PNT--AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
++ A IT++G +H A LG ++E I + K+GI+K V
Sbjct: 194 DSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVV 236
Score = 140 bits (354), Expect = 8e-35
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 4/163 (2%)
Query: 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLN--GEPISYDKF 776
K +H++GTKGKGST A+ +ILR+ G+S G ++SPHL +RERI + G+P+S +
Sbjct: 74 KFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTL 133
Query: 777 TKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 836
F + L + +F+ LT ++F +F +E D ++E G+GG D TN+I
Sbjct: 134 NDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVI 193
Query: 837 PNT--AVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
++ A IT++G +H A LG ++E I + K+GI+K V
Sbjct: 194 DSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVV 236
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/
dihydrofolate synthase; Provisional.
Length = 416
Score = 120 bits (304), Expect = 6e-29
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 47 NKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIK 106
NK+ PQ+ L+ L++ L +++ +V QV L L
Sbjct: 3 NKQTPQATSPLASWLSYLEN---------LHSKTIDLGLERVSQVAARLDLLK------P 47
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 166
V ++GT GKG+TC ESIL + G+ G +SSPHL+ ER+++ G+ + T
Sbjct: 48 APFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTA 107
Query: 167 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPN 226
F + A R + YF++ T+ + ++F + + D VI+EVG+GGR D TNI+ +
Sbjct: 108 SF----AEIEAAR--GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIV-D 160
Query: 227 TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
V +TS+ DHT LG E I +KAGI + AV
Sbjct: 161 ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAV 199
Score = 120 bits (304), Expect = 6e-29
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 22/219 (10%)
Query: 659 NKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIK 718
NK+ PQ+ L+ L++ L +++ +V QV L L
Sbjct: 3 NKQTPQATSPLASWLSYLEN---------LHSKTIDLGLERVSQVAARLDLLK------P 47
Query: 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778
V ++GT GKG+TC ESIL + G+ G +SSPHL+ ER+++ G+ + T
Sbjct: 48 APFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTA 107
Query: 779 YFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPN 838
F + A R + YF++ T+ + ++F + + D VI+EVG+GGR D TNI+ +
Sbjct: 108 SF----AEIEAAR--GDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIV-D 160
Query: 839 TAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
V +TS+ DHT LG E I +KAGI + AV
Sbjct: 161 ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAV 199
>gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain.
This family contains a number of related ligase enzymes
which have EC numbers 6.3.2.*. This family includes:
MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure
and MurF catalyze consecutive steps in the synthesis of
peptidoglycan. Peptidoglycan consists of a sheet of two
sugar derivatives, with one of these N-acetylmuramic acid
attaching to a small pentapeptide. The pentapeptide is is
made of L-alanine, D-glutamic acid, Meso-diaminopimelic
acid and D-alanyl alanine. The peptide moiety is
synthesised by successively adding these amino acids to
UDP-N-acetylmuramic acid. MurC transfers the L-alanine,
MurD transfers the D-glutamate, MurE transfers the
diaminopimelic acid, and MurF transfers the D-alanyl
alanine. This family also includes Folylpolyglutamate
synthase that transfers glutamate to folylpolyglutamate.
Length = 88
Score = 39.3 bits (92), Expect = 8e-04
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 22/98 (22%)
Query: 1028 WPGRVQVIRK-NNFKYFLDGAHTTDSIE----LCAKWFLRKSEAEANPTQSKSSNVIQRI 1082
PGR++V+ + N D AH D++E F + + I
Sbjct: 1 VPGRLEVVGEGNGVLVIDDYAHNPDAMEAALRALRNLFPQG----------------RLI 44
Query: 1083 LVFNVTGERDPTKL-LSPLLQSNQFEYILVTPNILTNE 1119
LVF G+RD L L + + +++T + E
Sbjct: 45 LVFGAGGDRDAEFHALLGQLAAALADDVILTGDYPRAE 82
Score = 35.4 bits (82), Expect = 0.019
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 33/111 (29%)
Query: 416 WPGRVQVIRK-NNFKYFLDGAHTTDSIE----LCAKWFLRKSEAEASSSRSVSSCPLDPT 470
PGR++V+ + N D AH D++E F +
Sbjct: 1 VPGRLEVVGEGNGVLVIDDYAHNPDAMEAALRALRNLFPQG------------------- 41
Query: 471 QSKSSNVIQRILVFNVTGERDPTKL-LSPLLQSNQFEYILVTPNILTNESS 520
+ ILVF G+RD L L + + +++T + E
Sbjct: 42 --------RLILVFGAGGDRDAEFHALLGQLAAALADDVILTGDYPRAEEP 84
Score = 33.9 bits (78), Expect = 0.061
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 1188 WPGRVQVIRK-NNFKYFLDGAHTTDSIE 1214
PGR++V+ + N D AH D++E
Sbjct: 1 VPGRLEVVGEGNGVLVIDDYAHNPDAME 28
>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. Most
members of this family are EC 6.3.2.13,
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase. An exception is Staphylococcus
aureus, in which diaminopimelate is replaced by lysine
in the peptidoglycan and MurE is EC 6.3.2.7. The
Mycobacteria, part of the closest neighboring branch
outside of the low-GC Gram-positive bacteria, use
diaminopimelate. A close homolog, scoring just below the
trusted cutoff, is found (with introns) in Arabidopsis
thaliana. Its role is unknown [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 464
Score = 39.6 bits (93), Expect = 0.011
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 86 VQVDQVVQYLGHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFS 141
+ V + L L KKL VI ++GT GK +T + +LR G TG
Sbjct: 61 IIVPDLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIG 118
Score = 39.6 bits (93), Expect = 0.011
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 698 VQVDQVVQYLGHLNITLDDI--KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFS 753
+ V + L L KKL VI ++GT GK +T + +LR G TG
Sbjct: 61 IIVPDLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIG 118
Score = 34.2 bits (79), Expect = 0.46
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 1029 PGRVQVI-RKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSNVIQR-ILVFN 1086
PGR++++ F +D AHT D++E + + + R I+VF
Sbjct: 320 PGRMELVDGGQKFLVIVDYAHTPDALEKALRTLRKHKD--------------GRLIVVFG 365
Query: 1087 VTGERDPTK 1095
G+RD K
Sbjct: 366 CGGDRDRGK 374
>gnl|CDD|234660 PRK00139, murE,
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase; Provisional.
Length = 460
Score = 38.6 bits (91), Expect = 0.021
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSS 142
KL +I ++GT GK +T ILR G T +
Sbjct: 93 DKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGT 129
Score = 38.6 bits (91), Expect = 0.021
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSS 754
KL +I ++GT GK +T ILR G T +
Sbjct: 93 DKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGT 129
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 475
Score = 38.5 bits (90), Expect = 0.025
Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 31/145 (21%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
KL VI ++GT GK +T + IL+ G T E E L+ + T
Sbjct: 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIG----TEGDE---LSPGILEPTGLT 141
Query: 166 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 225
L + + +MEV G +
Sbjct: 142 TPEALDLQNLLRD---------------------LLDRGAEIAVMEVSSHG-LVQGRVEG 179
Query: 226 NTAVVGI-TSLGYDHTAVLGNTIEE 249
T VG+ T+L DH T+E
Sbjct: 180 VTFDVGVFTNLSRDHLD-YHGTMEY 203
Score = 38.5 bits (90), Expect = 0.025
Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 31/145 (21%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
KL VI ++GT GK +T + IL+ G T E E L+ + T
Sbjct: 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIG----TEGDE---LSPGILEPTGLT 141
Query: 778 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIP 837
L + + +MEV G +
Sbjct: 142 TPEALDLQNLLRD---------------------LLDRGAEIAVMEVSSHG-LVQGRVEG 179
Query: 838 NTAVVGI-TSLGYDHTAVLGNTIEE 861
T VG+ T+L DH T+E
Sbjct: 180 VTFDVGVFTNLSRDHLD-YHGTMEY 203
Score = 32.7 bits (75), Expect = 1.4
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
Query: 1018 KTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQSKSSN 1077
+T + + PGR++++ +D AH D L K+ +
Sbjct: 316 ETLKPV-----PGRMELVNIGGKLVIVDYAHNPDG--------LEKALRAVRLHAAG--- 359
Query: 1078 VIQRILVFNVTGERDPTKL 1096
+ I+VF G+RD +K
Sbjct: 360 --RLIVVFGCGGDRDKSKR 376
>gnl|CDD|215043 PLN00061, PLN00061, photosystem II protein Psb27; Provisional.
Length = 150
Score = 33.3 bits (76), Expect = 0.29
Identities = 14/55 (25%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 642 LVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQ 696
+VGA ++ ++S K++P++Y+ + +++ ++T+RES L++DP +
Sbjct: 32 VVGAIKSLFDPNEKTKSGKKLPKAYLKSAREV------VKTLRES-LKEDPKDEA 79
>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine
ligase; Provisional.
Length = 481
Score = 34.6 bits (80), Expect = 0.37
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 1021 RGIKACVWPGRVQVI-RKNNFKYFLDGAHTTDSIELCAKWFLRK--SEAEANPTQSKSSN 1077
+GI PGR++V+ + N K F+D AH DS L K E +
Sbjct: 320 KGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDS--------LNKLIDVVEEHQKG----- 366
Query: 1078 VIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPNILT 1117
+ IL+ G + ++ +N+ Y+ V ILT
Sbjct: 367 --KLILLLGAAGNKGESRRPDFGRVANRHPYLQV---ILT 401
Score = 32.7 bits (75), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 409 RGIKACVWPGRVQVI-RKNNFKYFLDGAHTTDSIE 442
+GI PGR++V+ + N K F+D AH DS+
Sbjct: 320 KGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDSLN 354
Score = 32.7 bits (75), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1181 RGIKACVWPGRVQVI-RKNNFKYFLDGAHTTDSIE 1214
+GI PGR++V+ + N K F+D AH DS+
Sbjct: 320 KGIAQTPVPGRMEVLTQSNGAKVFIDYAHNGDSLN 354
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 33.0 bits (75), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 1049 TTDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEY 1108
T D + L +W + E P S V Q V+ V G D KLL L+ N +E
Sbjct: 281 TDDVMNLAKQWTTDPAIVEIEPENVASDTVEQH--VYAVAGS-DKYKLLYNLVTQNPWER 337
Query: 1109 ILVTPN 1114
++V N
Sbjct: 338 VMVFAN 343
>gnl|CDD|132287 TIGR03243, arg_catab_AOST, arginine and ornithine
succinyltransferase subunits. In many bacteria, the
sole member of this protein family is arginine
N-succinyltransferase (EC 2.3.1.109), the AstA protein
of the arginine succinyltransferase (ast) pathway.
However, in Pseudomonas aeruginosa and several other
species, a tandem gene pair encodes alpha and beta
subunits of a heterodimer that is designated arginine
and ornithine succinyltransferase (AOST).
Length = 335
Score = 31.9 bits (73), Expect = 2.4
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 37 GAVTPHASRS----NKE--IPQSYVDAIKQLNTLQS---NIRTIRESKLRKDPVEMQAVQ 87
G V P + E Q YVD TL++ +IR +RES+ PV++
Sbjct: 224 GQVHPDTRPARAMLESEGFRYQGYVDIFDAGPTLEAEVDDIRAVRESRRV--PVKVGESA 281
Query: 88 VDQVVQYL 95
YL
Sbjct: 282 PGDGTPYL 289
Score = 31.1 bits (71), Expect = 4.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 663 PQSYVDAIKQLNTLQS---NIRTIRESKLRKDPVEMQAVQVDQVVQYL 707
Q YVD TL++ +IR +RES+ PV++ YL
Sbjct: 244 YQGYVDIFDAGPTLEAEVDDIRAVRESRRV--PVKVGESAPGDGTPYL 289
>gnl|CDD|116003 pfam07380, Pneumo_M2, Pneumovirus M2 protein. This family consists
of several Pneumovirus M2 proteins. The M2-1 protein of
respiratory syncytial virus (RSV) is a transcription
processivity factor that is essential for virus
replication.
Length = 89
Score = 29.1 bits (65), Expect = 3.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 1104 NQFEYILVTPNILTNEIRWRGQPLDEDWKSTVQSINISLAIQLAYL 1149
NQ+ + + N + +EI W Q L +D + +Q + IS I Y+
Sbjct: 42 NQYPNHMYSQNHMFDEIHWTSQELIDDVQKFLQHLGISEDIYTIYI 87
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate
ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
alanine ligase; Provisional.
Length = 958
Score = 31.2 bits (71), Expect = 4.7
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 106 KKLNVIHISGTKGKGSTCAY-CESILRSHGFSTG 138
++L+++ ++GT GK ++CA +L G G
Sbjct: 110 EQLSLVAVTGTNGK-TSCAQLLAQLLTRLGKPCG 142
Score = 31.2 bits (71), Expect = 4.7
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 718 KKLNVIHISGTKGKGSTCAY-CESILRSHGFSTG 750
++L+++ ++GT GK ++CA +L G G
Sbjct: 110 EQLSLVAVTGTNGK-TSCAQLLAQLLTRLGKPCG 142
>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain.
Length = 178
Score = 30.0 bits (68), Expect = 5.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 196 SFYVFVKEKPDAVIMEVG----IGGRYDNTNIIPNTAVVGITSLGYDHTAVLGN--TIEE 249
+ K+ D ++E+ GR + P+ AV IT++ DH L T+E
Sbjct: 39 LLALMPKKGADYAVLELSSFGLGEGRLEGLA-KPDIAV--ITNISPDH---LDYHGTMEN 92
Query: 250 ITMQKAGI---MKPNCIAV 265
KA I + + IAV
Sbjct: 93 YAAAKAEIFEGLPEDGIAV 111
Score = 30.0 bits (68), Expect = 5.8
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 808 SFYVFVKEKPDAVIMEVG----IGGRYDNTNIIPNTAVVGITSLGYDHTAVLGN--TIEE 861
+ K+ D ++E+ GR + P+ AV IT++ DH L T+E
Sbjct: 39 LLALMPKKGADYAVLELSSFGLGEGRLEGLA-KPDIAV--ITNISPDH---LDYHGTMEN 92
Query: 862 ITMQKAGI---MKPNCIAV 877
KA I + + IAV
Sbjct: 93 YAAAKAEIFEGLPEDGIAV 111
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 30.2 bits (68), Expect = 8.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 90 QVVQYLGHLNITL-DDI-------KKLNVIHISGTKGKGSTCAYCESILRSHG 134
++V+ + NI + DI K L I I+GT GK +T A IL S+G
Sbjct: 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130
Score = 30.2 bits (68), Expect = 8.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 702 QVVQYLGHLNITL-DDI-------KKLNVIHISGTKGKGSTCAYCESILRSHG 746
++V+ + NI + DI K L I I+GT GK +T A IL S+G
Sbjct: 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130
>gnl|CDD|189541 pfam00426, VP4_haemagglut, Outer Capsid protein VP4
(Hemagglutinin).
Length = 776
Score = 30.1 bits (68), Expect = 10.0
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 565 SRSGDNSIRSNANPLSS-VDCHN-VNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNF 622
S S +SIRS + S D + + D SNS + I+T S +S++ ++ EF++ + NF
Sbjct: 574 SVSRSSSIRSVGSTASVWTDVSDQLTDVSNSVNDISTQTSTISRKLRLKEFATQTEGMNF 633
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 62,236,589
Number of extensions: 6047624
Number of successful extensions: 4844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4804
Number of HSP's successfully gapped: 55
Length of query: 1255
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1147
Effective length of database: 6,147,370
Effective search space: 7051033390
Effective search space used: 7051033390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.8 bits)