RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15432
(1255 letters)
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 238 bits (609), Expect = 5e-69
Identities = 95/421 (22%), Positives = 154/421 (36%), Gaps = 85/421 (20%)
Query: 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 759
V QV + L L + ++GT GKG+TC E+IL + G G +SSPHL+
Sbjct: 38 VKQVAERLDLLK------PAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLR 91
Query: 760 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 818
ER+++ G+ +S + + F + D+ YF+F T+ + +F + K D
Sbjct: 92 YTERVRIQGQELSEAEHSHSFAQI-------EAGRGDISLTYFEFGTLSALQLFKQAKLD 144
Query: 819 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
VI+EVG+GGR D TNI+ + A ITS+ DHT LG E I +KAG+ + AV
Sbjct: 145 VVILEVGLGGRLDATNIVDSDVAA--ITSIALDHTDWLGYDRESIGREKAGVFRGGKPAV 202
Query: 878 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 937
Q + + + L L D WK
Sbjct: 203 VGEPD---MPQSIADVAAELGAQLYRR-------------DVAWK--------------- 231
Query: 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 997
++ E Q + G+ L+ P
Sbjct: 232 --------------------FSQQEPFDQQEPVDQQIN--GWHWQCGERQLTGLPVPNVP 269
Query: 998 GHLTGNQS---SLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 1053
N + ++L + + R G++A PGR QV+ + LD AH +
Sbjct: 270 LA---NAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP-LLILDVAHNPHAA 325
Query: 1054 ELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTP 1113
L + N ++ + V + ++D L+ L + E+
Sbjct: 326 RYLVNR-LAQVINPVNASKQG-----KVRAVVGMLSDKDIAGTLACLSERVD-EWYCAPL 378
Query: 1114 N 1114
Sbjct: 379 E 379
Score = 231 bits (592), Expect = 9e-67
Identities = 95/432 (21%), Positives = 155/432 (35%), Gaps = 96/432 (22%)
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V QV + L L + ++GT GKG+TC E+IL + G G +SSPHL+
Sbjct: 38 VKQVAERLDLLK------PAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLR 91
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 206
ER+++ G+ +S + + F + D+ YF+F T+ + +F + K D
Sbjct: 92 YTERVRIQGQELSEAEHSHSFAQI-------EAGRGDISLTYFEFGTLSALQLFKQAKLD 144
Query: 207 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
VI+EVG+GGR D TNI+ + A ITS+ DHT LG E I +KAG+ + AV
Sbjct: 145 VVILEVGLGGRLDATNIVDSDVAA--ITSIALDHTDWLGYDRESIGREKAGVFRGGKPAV 202
Query: 266 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 325
Q + + + L L D WK
Sbjct: 203 VGEPD---MPQSIADVAAELGAQLYRR-------------DVAWK--------------- 231
Query: 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 385
++ E Q + G+ L+ P
Sbjct: 232 --------------------FSQQEPFDQQEPVDQQIN--GWHWQCGERQLTGLPVPNVP 269
Query: 386 GHLTGNQS---SLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSI 441
N + ++L + + R G++A PGR QV+ + LD AH +
Sbjct: 270 LA---NAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP-LLILDVAHNPHAA 325
Query: 442 ELCAKWFLRKSEAEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQ 501
L + ++S+ + V + ++D L+ L +
Sbjct: 326 RYLVNR-LAQVINPVNASKQG----------------KVRAVVGMLSDKDIAGTLACLSE 368
Query: 502 SNQFEYILVTPN 513
E+
Sbjct: 369 RVD-EWYCAPLE 379
Score = 34.8 bits (81), Expect = 0.20
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 1173 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKW 1219
+ + R G++A PGR QV+ + LD AH +
Sbjct: 285 LPLSDEAIRQGLQAASLPGRFQVVSEQP-LLILDVAHNPHAARYLVNR 331
Score = 32.9 bits (76), Expect = 0.75
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 634 ILVTGSLHLVGAFLNVL 650
++V GS H V + L
Sbjct: 419 VIVCGSFHTVAHVMAAL 435
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166,
structural genomics, JC protein structure initiative;
2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Length = 442
Score = 236 bits (605), Expect = 2e-68
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 24/254 (9%)
Query: 89 DQVVQYL------GHLNITLDDI-----------KKLNVIHISGTKGKGSTCAYCESILR 131
+V++YL G + L+ I + IHI GT GKGS +IL
Sbjct: 16 LEVLRYLYHKRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILV 75
Query: 132 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKF 191
S G+ G + SPHL RERI+LN E IS + K + T+ L+ K P++F+
Sbjct: 76 SQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEV 135
Query: 192 LTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEIT 251
+T M+F F ++ D ++EVG+GGR D TN++ I ++ DH LG TIE+I
Sbjct: 136 VTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIA 194
Query: 252 MQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAP-----SILNYRWRGQPLD 306
+K+GI+K VT ++ +++ + +R + + + + + D
Sbjct: 195 WEKSGIIKERVPLVT-GERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFD 253
Query: 307 EDWKSTVQSINISL 320
++T + + +++
Sbjct: 254 YCGENTFEDLVLTM 267
Score = 236 bits (605), Expect = 2e-68
Identities = 71/254 (27%), Positives = 122/254 (48%), Gaps = 24/254 (9%)
Query: 701 DQVVQYL------GHLNITLDDI-----------KKLNVIHISGTKGKGSTCAYCESILR 743
+V++YL G + L+ I + IHI GT GKGS +IL
Sbjct: 16 LEVLRYLYHKRPMGKVKPGLERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILV 75
Query: 744 SHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPAYFKF 803
S G+ G + SPHL RERI+LN E IS + K + T+ L+ K P++F+
Sbjct: 76 SQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEV 135
Query: 804 LTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEIT 863
+T M+F F ++ D ++EVG+GGR D TN++ I ++ DH LG TIE+I
Sbjct: 136 VTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIA 194
Query: 864 MQKAGIMKPNCIAVTSANQRGPCKQILLETSRALNCVLLEAP-----SILNYRWRGQPLD 918
+K+GI+K VT ++ +++ + +R + + + + + D
Sbjct: 195 WEKSGIIKERVPLVT-GERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFD 253
Query: 919 EDWKSTVQSINISL 932
++T + + +++
Sbjct: 254 YCGENTFEDLVLTM 267
Score = 49.5 bits (119), Expect = 5e-06
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 14/103 (13%)
Query: 1013 FEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPT 1071
+ K G+K GR +++ KN Y LDGAH E L +S
Sbjct: 288 LPLSEKAIREGLKNAKNLGRFEILEKNGKMYILDGAHNPHGAES-----LVRSLKLYFNG 342
Query: 1072 QSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
+ LV + +++ +L + I+
Sbjct: 343 E-------PLSLVIGILDDKNREDILRKYTGIFE-RVIVTRVP 377
Score = 46.0 bits (110), Expect = 7e-05
Identities = 30/144 (20%), Positives = 46/144 (31%), Gaps = 37/144 (25%)
Query: 1087 VTGERDP----------TKLLSPLLQSNQ-FEYILVTPNILTNEIRWRGQPLDEDWKS-- 1133
VTGER K S + ++ F + + + N + G+ ED
Sbjct: 208 VTGERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTM 267
Query: 1134 --TVQSINISLAIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEIDPKT-YRGIKACVWPG 1190
Q N +A++ E + K G+K G
Sbjct: 268 NGPHQIENAGVALKTL-----------EAT----------GLPLSEKAIREGLKNAKNLG 306
Query: 1191 RVQVIRKNNFKYFLDGAHTTDSIE 1214
R +++ KN Y LDGAH E
Sbjct: 307 RFEILEKNGKMYILDGAHNPHGAE 330
Score = 45.6 bits (109), Expect = 8e-05
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 25/114 (21%)
Query: 401 FEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEASSS 459
+ K G+K GR +++ KN Y LDGAH E L +S +
Sbjct: 288 LPLSEKAIREGLKNAKNLGRFEILEKNGKMYILDGAHNPHGAES-----LVRSLKLYFNG 342
Query: 460 RSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 513
LV + +++ +L + I+
Sbjct: 343 E------------------PLSLVIGILDDKNREDILRKYTGIFE-RVIVTRVP 377
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex,
ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei}
SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A
2gc5_A* 2gc6_A* 2gcb_A
Length = 428
Score = 232 bits (595), Expect = 3e-67
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 3/188 (1%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
++ IH++GT GKGS +L + G + G ++SP ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALV 96
Query: 166 KYFWTVYNALHA-KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
V AL +++ A+ F+F+T ++++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V +T + DH +LG+TI I KAGI+K VT N ++
Sbjct: 157 -TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT-GNLVPDAAAVVAAKVAT 214
Query: 285 LNCVLLEA 292
L
Sbjct: 215 TGSQWLRF 222
Score = 232 bits (595), Expect = 3e-67
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 3/188 (1%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
++ IH++GT GKGS +L + G + G ++SP ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALV 96
Query: 778 KYFWTVYNALHA-KRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 836
V AL +++ A+ F+F+T ++++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 837 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 896
V +T + DH +LG+TI I KAGI+K VT N ++
Sbjct: 157 -TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVT-GNLVPDAAAVVAAKVAT 214
Query: 897 LNCVLLEA 904
L
Sbjct: 215 TGSQWLRF 222
Score = 43.3 bits (103), Expect = 4e-04
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 1007 LLMGPHFEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSE 1065
+ + P+ +G+ A WP R++ I +DGAH D I L++
Sbjct: 275 YAKQTEWPLTPQNIRQGLAASHWPARLEKISDTP-LIVIDGAHNPDGINGLIT-ALKQLF 332
Query: 1066 AEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
++ ++ + ++D + L + Y++ P
Sbjct: 333 SQ------------PITVIAGILADKDYAAMADRLTAAFSTVYLVPVPG 369
Score = 41.4 bits (98), Expect = 0.002
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 1136 QSINISLAIQLAYLWMFRMNKSAELKRNQSSLPMGPHFEIDPKT-YRGIKACVWPGRVQV 1194
Q N+++AIQ A + + + P+ +G+ A WP R++
Sbjct: 261 QQRNMAIAIQTAKV-----------------YAKQTEWPLTPQNIRQGLAASHWPARLEK 303
Query: 1195 IRKNNFKYFLDGAHTTDSIE 1214
I +DGAH D I
Sbjct: 304 ISDTP-LIVIDGAHNPDGIN 322
Score = 39.4 bits (93), Expect = 0.006
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 395 LLMGPHFEIDPKT-YRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIE 442
+ + P+ +G+ A WP R++ I +DGAH D I
Sbjct: 275 YAKQTEWPLTPQNIRQGLAASHWPARLEKISDTP-LIVIDGAHNPDGIN 322
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase, multifunctional
enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB:
1w7k_A*
Length = 422
Score = 230 bits (589), Expect = 1e-66
Identities = 90/418 (21%), Positives = 149/418 (35%), Gaps = 98/418 (23%)
Query: 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 759
V V LG L V ++GT GKG+TC ESIL + G+ G +SSPHL+
Sbjct: 35 VSLVAARLGVLK------PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVR 88
Query: 760 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 818
ER+++ G+ + T F + D+ YF++ T+ + ++F + + D
Sbjct: 89 YTERVRVQGQELPESAHTASFAEI-------ESARGDISLTYFEYGTLSALWLFKQAQLD 141
Query: 819 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 877
VI+EVG+GGR D TNI+ + AV +TS+ DHT LG E I +KAGI + A+
Sbjct: 142 VVILEVGLGGRLDATNIVDADVAV--VTSIALDHTDWLGPDRESIGREKAGIFRSEKPAI 199
Query: 878 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 937
+ + + ++ +L +W +V
Sbjct: 200 VGEPE---MPSTIADVAQEKGALLQRR-------------GVEWNYSVT----------D 233
Query: 938 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 997
+ W F G L P
Sbjct: 234 HDWAFS---------------------------------------DAHGTLENLPLPLVP 254
Query: 998 GHLTGNQSSLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELC 1056
+ L E+ R GI + + PGR Q++ + + + D AH + E
Sbjct: 255 QPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSE-SPRVIFDVAHNPHAAE-- 311
Query: 1057 AKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
+L + + V + ++D L+ L + + P
Sbjct: 312 ---YLTGRMKALPKNG-------RVLAVIGMLHDKDIAGTLAWLK--SVVDDWYCAPL 357
Score = 226 bits (580), Expect = 2e-65
Identities = 83/352 (23%), Positives = 132/352 (37%), Gaps = 84/352 (23%)
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
V V LG L V ++GT GKG+TC ESIL + G+ G +SSPHL+
Sbjct: 35 VSLVAARLGVLK------PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVR 88
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPD 206
ER+++ G+ + T F + D+ YF++ T+ + ++F + + D
Sbjct: 89 YTERVRVQGQELPESAHTASFAEI-------ESARGDISLTYFEYGTLSALWLFKQAQLD 141
Query: 207 AVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAV 265
VI+EVG+GGR D TNI+ + AV +TS+ DHT LG E I +KAGI + A+
Sbjct: 142 VVILEVGLGGRLDATNIVDADVAV--VTSIALDHTDWLGPDRESIGREKAGIFRSEKPAI 199
Query: 266 TSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLA 325
+ + + ++ +L +W +V
Sbjct: 200 VGEPE---MPSTIADVAQEKGALLQRR-------------GVEWNYSVT----------D 233
Query: 326 YLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQ 385
+ W F G L P
Sbjct: 234 HDWAFS---------------------------------------DAHGTLENLPLPLVP 254
Query: 386 GHLTGNQSSLLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAH 436
+ L E+ R GI + + PGR Q++ + + + D AH
Sbjct: 255 QPNAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSE-SPRVIFDVAH 305
Score = 34.8 bits (81), Expect = 0.19
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1173 FEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAH 1208
E+ R GI + + PGR Q++ + + + D AH
Sbjct: 270 LEVSENAIRDGIASAILPGRFQIVSE-SPRVIFDVAH 305
Score = 32.1 bits (74), Expect = 1.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 634 ILVTGSLHLVGAFLNVL 650
+LV GS H V + V+
Sbjct: 398 VLVCGSFHTVAHVMEVI 414
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan
synthesis, cell division; HET: ADP; 2.0A {Mycobacterium
tuberculosis} PDB: 2vor_A*
Length = 487
Score = 223 bits (571), Expect = 2e-63
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 25/236 (10%)
Query: 88 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 147
+ ++ LG + IHI+GT GK S ++++ + TG +SPHL
Sbjct: 50 ISALMDLLGSPQ------RSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQS 103
Query: 148 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-------YFKFLTVMSFYVF 200
ERI ++G+PIS ++ + + + + ++ F+ LT M+F F
Sbjct: 104 PVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAF 163
Query: 201 VKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 259
D ++EVG+GGR+D TN+I AV IT + DH LG I I +KAGI+
Sbjct: 164 ADAPVDVAVVEVGMGGRWDATNVINAPVAV--ITPISIDHVDYLGADIAGIAGEKAGIIT 221
Query: 260 ------PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDW 309
P+ +AV Q ++LL S + + S + + +
Sbjct: 222 RAPDGSPDTVAVI-GRQVPKVMEVLLAESVRADASVAREDS--EFAVLRRQIAVGG 274
Score = 223 bits (571), Expect = 2e-63
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 25/236 (10%)
Query: 700 VDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIE 759
+ ++ LG + IHI+GT GK S ++++ + TG +SPHL
Sbjct: 50 ISALMDLLGSPQ------RSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQS 103
Query: 760 VRERIKLNGEPISYDKFTKYFWTVYNALHAKRKHAEDMPA-------YFKFLTVMSFYVF 812
ERI ++G+PIS ++ + + + + ++ F+ LT M+F F
Sbjct: 104 PVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAF 163
Query: 813 VKEKPDAVIMEVGIGGRYDNTNII-PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMK 871
D ++EVG+GGR+D TN+I AV IT + DH LG I I +KAGI+
Sbjct: 164 ADAPVDVAVVEVGMGGRWDATNVINAPVAV--ITPISIDHVDYLGADIAGIAGEKAGIIT 221
Query: 872 ------PNCIAVTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDW 921
P+ +AV Q ++LL S + + S + + +
Sbjct: 222 RAPDGSPDTVAVI-GRQVPKVMEVLLAESVRADASVAREDS--EFAVLRRQIAVGG 274
Score = 42.7 bits (101), Expect = 6e-04
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 15/109 (13%)
Query: 1007 LLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSE 1065
G ++D R G A PGR++ +R F+D AH L ++
Sbjct: 313 FGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAP-TVFIDAAHNPAGASA-----LAQTL 366
Query: 1066 AEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 1114
A + + V +V G++D +L+ L ++
Sbjct: 367 AHEFDFR-------FLVGVLSVLGDKDVDGILAALEPVFD-SVVVTHNG 407
Score = 39.2 bits (92), Expect = 0.008
Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 395 LLMGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSE 453
G ++D R G A PGR++ +R F+D AH L ++
Sbjct: 313 FGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAP-TVFIDAAHNPAGASA-----LAQTL 366
Query: 454 AEASSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN 513
A R + V +V G++D +L+ L ++
Sbjct: 367 AHEFDFR------------------FLVGVLSVLGDKDVDGILAALEPVFD-SVVVTHNG 407
Score = 37.3 bits (87), Expect = 0.036
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 1169 MGPHFEIDPKTYR-GIKACVWPGRVQVIRKNNFKYFLDGAH 1208
G ++D R G A PGR++ +R F+D AH
Sbjct: 315 AGAQRQLDGDAVRAGFAAVTSPGRLERMRSAP-TVFIDAAH 354
Score = 30.7 bits (70), Expect = 3.1
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 595 HKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGAFLNVLITP 653
+ A+ + +V+ ++ I++TGS+ GA +
Sbjct: 431 RTAENLRDAIDVATSLVDDAAADPDVAGDAFSRT----GIVITGSVVTAGAARTLFGRD 485
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 3e-10
Identities = 124/767 (16%), Positives = 206/767 (26%), Gaps = 311/767 (40%)
Query: 496 LSPL-LQSNQFEYILVTPNILTNESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRP 554
PL L E++L+ P T +Q + ++F L T EP
Sbjct: 6 TRPLTLSHGSLEHVLLVP---TASFFIASQL---Q--EQFNKILPEPTEGFAADDEP--- 54
Query: 555 NVGQGGGGFQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFS 614
+ A + F + V+S + SKV +F
Sbjct: 55 ------------------TTPAELVGK------------F--LGYVSSLVEP-SKVGQFD 81
Query: 615 SVLDTY--NFKYGLDPSKEYHILVTGSLH-LVGAFLNVLITPHASRSNKEIPQSYVDAIK 671
VL+ F E L +H L L T KE+ ++Y+ A
Sbjct: 82 QVLNLCLTEF--------ENCYLEGNDIHALAAKLLQENDTTLVKT--KELIKNYITA-- 129
Query: 672 QLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGK 731
+ S L +AV I G G+
Sbjct: 130 -RIMAKRPFDKKSNSAL------FRAVGEGNAQLVA-----------------IFG--GQ 163
Query: 732 GSTCAYCESILRS-----HGFSTGFF--SSPHLIEVRERIKLNGEPISYDK-FTKYF--- 780
G+T Y E LR H S+ L E L + +K FT+
Sbjct: 164 GNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSE------LIRTTLDAEKVFTQGLNIL 216
Query: 781 -WTVYNALHAKRKHAEDMP--AYFKFLTVMSFYVFVKEKPDAVIMEVGIG----GRYDNT 833
W L + + P Y + + S P IG Y
Sbjct: 217 EW-----LE----NPSNTPDKDYLLSIPI-SC-------P-------LIGVIQLAHY--- 249
Query: 834 NIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLET 893
VV LG+ + + ++ T G++ IA T +
Sbjct: 250 -------VVTAKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETD-------------S 288
Query: 894 SRALNCVLLEAPSILNYR-WRGQ---PLDEDWKSTVQ-SINIS-------LAIQLAYLWM 941
+ + +A ++L + R P S ++ S+ + L+I
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS------ 342
Query: 942 FRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGH-L 1000
+ + +++ ++K N HL P G+ + S G + +
Sbjct: 343 -NLTQ-EQVQDYVNKT---------NS------HL-----PAGK-QVEISLVNGAKNLVV 379
Query: 1001 TGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1060
+G SL Y L+
Sbjct: 380 SGPPQSL----------------------------------YGLNLT------------- 392
Query: 1061 LRKSEAEANPTQSK---SSNVIQRILVFNVTGERDPTKLL-------SPLLQSNQFEYIL 1110
LRK++A + QS+ S +R L F+ + L S LL
Sbjct: 393 LRKAKAPSGLDQSRIPFS----ERKLKFS-------NRFLPVASPFHSHLLVP------- 434
Query: 1111 VTPNILT----NEIRWRGQPLD---------EDWKSTVQSINISLAIQLAYL---WMFRM 1154
+ I N + + + + D + SI+ + + L W
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 1155 NKSAELKRNQSSLPMGPHFEID--PKTYRGIKACV---WPGR-VQVI 1195
A H +D P G+ G V+VI
Sbjct: 495 QFKA------------THI-LDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 58.9 bits (142), Expect = 1e-08
Identities = 94/625 (15%), Positives = 175/625 (28%), Gaps = 240/625 (38%)
Query: 602 SALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLVGA-----FLNVLITPHAS 656
A S R + +G S E+ +LV + + + F +L P
Sbjct: 2 DAYSTRPLTLS-----------HG---SLEHVLLVPTASFFIASQLQEQFNKILPEPTEG 47
Query: 657 RSNKEIPQSYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDD 716
+ + P + P E+ V ++LG+++ ++
Sbjct: 48 FAADDEPTT--------------------------PAEL-------VGKFLGYVSSLVEP 74
Query: 717 IKKLNVIHISGTKGKGSTCAYCESILRS---HGFSTGFFSSPH--LIEVRERIK------ 765
K + + L H + L++ +E IK
Sbjct: 75 SKVGQFDQVL----NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 766 -LNGEPIS------------------YDKF------TKYF------WTVYNAL------- 787
+ P F YF + Y+ L
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 788 HAKR-----KHAEDMPAYF-KFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTA- 840
A+ + D F + L ++ + E P P+
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWL----ENPSNT----------------PDKDY 230
Query: 841 ---------VVGITSLG-YDHTA-VLGNTIEEI-------TMQKAGIMKPNCIAVTSANQ 882
++G+ L Y TA +LG T E+ T G++ IA T
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--- 287
Query: 883 RGPCKQILLETSRALNCVLLEAPSILNYR-WRGQ---PLDEDWKSTVQ-SINIS------ 931
+ + + +A ++L + R P S ++ S+ +
Sbjct: 288 ----------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 932 -LAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSF 990
L+I + + +++ ++K N HL P G+ +
Sbjct: 338 MLSIS-------NLTQ-EQVQDYVNKT---------NS------HL-----PAGK-QVEI 368
Query: 991 SETPGGQGH-LTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQV-I----RKNNFKY-F 1043
S G + ++G SL + T R KA G Q I RK F F
Sbjct: 369 SLVNGAKNLVVSGPPQSLY---GLNL---TLRKAKAP--SGLDQSRIPFSERKLKFSNRF 420
Query: 1044 LD-GA--HT---TDSIELCAKWFLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLL 1097
L + H+ + +L K L K+ N + I V++ D L
Sbjct: 421 LPVASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQ-------IPVYDTFDGSDLRVLS 472
Query: 1098 SPLLQSNQFEYILVTPNILTNEIRW 1122
+ + + I+ ++W
Sbjct: 473 GSISER-------IVDCIIRLPVKW 490
Score = 53.1 bits (127), Expect = 6e-07
Identities = 99/611 (16%), Positives = 185/611 (30%), Gaps = 202/611 (33%)
Query: 16 KDAHRKTLPDKTEVHHG---------------GYKHGAVTPHASRSNKEIPQSYVDAIKQ 60
++ K LP+ TE GY V P ++ + +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 61 LNTLQSN-IRTIRESKLRKDPVEMQAVQVDQVVQ-YLGHLNITLDDIKK------LNVIH 112
L+ N I + L+++ + + ++++ Y+ + K +
Sbjct: 94 -CYLEGNDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 113 ISGTK------GKGSTCAYCESILRS-----HGFSTGFF--SSPHLIEVRERIKLNGEPI 159
+ G+G+T Y E LR H S+ L E L +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSE------LIRTTL 203
Query: 160 SYDK-FTKYF----WTVYNALHAKRKHAEDMP--AYFKFLTVMSFYVFVKEKPDAVIMEV 212
+K FT+ W L + + P Y + + S P
Sbjct: 204 DAEKVFTQGLNILEW-----LE----NPSNTPDKDYLLSIPI-SC-------P------- 239
Query: 213 GIG----GRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSA 268
IG Y VV LG+ + + ++ T G++ IA T
Sbjct: 240 LIGVIQLAHY----------VVTAKLLGFTPGELR-SYLKGATGHSQGLVTAVAIAETD- 287
Query: 269 NQRGPCKQILLETSRALNCVLLEAPSILNYR-WRGQ---PLDEDWKSTVQ-SINIS---- 319
+ + + +A ++L + R P S ++ S+ +
Sbjct: 288 ------------SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 320 ---LAIQLAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHL 376
L+I + + +++ ++K N HL P G+ +
Sbjct: 336 SPMLSIS-------NLTQ-EQVQDYVNKT---------NS------HL-----PAGK-QV 366
Query: 377 SFSETPGGQGH-LTGNQSSLLMGPHFEIDPKTYRGIKACVWPGRVQV-I----RKNNFKY 430
S G + ++G SL + T R KA G Q I RK F
Sbjct: 367 EISLVNGAKNLVVSGPPQSLY---GLNL---TLRKAKAP--SGLDQSRIPFSERKLKFSN 418
Query: 431 -FLD-GA--HT---TDSIELCAKWFLRKSEAEASSSRSVSSCPLDPT------QSKSSNV 477
FL + H+ + +L K ++ + + + + P+ T + S ++
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI---PVYDTFDGSDLRVLSGSI 475
Query: 478 IQR----ILVFNV----TGERDPTKLL----------SPLLQSNQ----FEYILVTPNIL 515
+R I+ V T + T +L L N+ I+
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---- 531
Query: 516 TNESSPDTQYG 526
T + +PD YG
Sbjct: 532 TLDINPDDDYG 542
Score = 50.8 bits (121), Expect = 3e-06
Identities = 90/469 (19%), Positives = 137/469 (29%), Gaps = 181/469 (38%)
Query: 437 TTDSIELCAKWFLR--KSEAEASSSRSVSSCPLDPTQSKSSNVIQRILV-FNVT--GERD 491
T EL K FL S E S + V+ L F D
Sbjct: 54 PTTPAELVGK-FLGYVSSLVEPSK------------VGQFDQVLNLCLTEFENCYLEGND 100
Query: 492 PTKLLSPLLQSNQFEYILVTPNILTNESSPDTQY-----GGNRTIDRFGVKLDSR--TAA 544
L + LLQ N ++ T ++ N Y R D+ K +S A
Sbjct: 101 IHALAAKLLQENDTT-LVKTKELIKN-------YITARIMAKRPFDK---KSNSALFRAV 149
Query: 545 PNGGHEP----GRPNVGQGGGGFQSRSGDNS------IRSNANPLSSVDCHNVNDQSNSF 594
G + G GQG N+ +R L V D
Sbjct: 150 GEGNAQLVAIFG----GQG----------NTDDYFEELRD----LYQTYHVLVGD----L 187
Query: 595 HKIATVASALSQRSKVVEFSSVLDTYNFKYGLD-----------PSKEY----------- 632
I A LS+ + + + F GL+ P K+Y
Sbjct: 188 --IKFSAETLSELIRTTLDAEKV----FTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 633 ------HILVT--------GSL--HLVGAFLNV--LITPHA---SRSNKEIPQSYVDAIK 671
H +VT G L +L GA + L+T A + S + S AI
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 672 QL-----NTLQSNIRTIRESKLRKDPVE--------MQAVQ---VDQVVQYLGHLNITLD 715
L ++ T + +D +E M ++ +QV Y+ N L
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 716 DIKKL---------NVIHISGT------------KGKGSTCA------YCESILRSHGFS 748
K++ N++ +SG K K + + E R FS
Sbjct: 362 AGKQVEISLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE---RKLKFS 417
Query: 749 TGF------FSSPHLIEVRERIK--LNGEPISYD----KFTKYFWTVYN 785
F F S L+ + I L +S++ + VY+
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----PVYD 461
Score = 30.8 bits (69), Expect = 3.6
Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 49/149 (32%)
Query: 598 ATVA-------SALSQRSKVVEFSSVLDTYNF-----------------KYG---LDPSK 630
AT A +AL+ + V+ S+++ + YG ++P +
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 631 EYHILVTGSLHLVGAFLNVLITPHASRSNK--EI------PQSYVDA--IKQLNTLQSNI 680
+ + S + + + R+ EI Q YV A ++ L+T+ +N+
Sbjct: 1817 ---VAASFSQEALQYVVERV----GKRTGWLVEIVNYNVENQQYVAAGDLRALDTV-TNV 1868
Query: 681 RTIRESKLRK-DPVEMQ-AVQVDQVVQYL 707
+ KL+K D +E+Q ++ +++V +L
Sbjct: 1869 --LNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 1e-09
Identities = 86/610 (14%), Positives = 175/610 (28%), Gaps = 159/610 (26%)
Query: 586 NVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEY-HIL-----VTGS 639
+ + I +V V+ D + + +E HI+ V+G+
Sbjct: 10 ETGEHQYQYKDILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 640 LHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNT--LQSNIRTIRESKLRKDPVEMQA 697
L L L +E+ Q +V+ + ++N L S I+T E + M
Sbjct: 65 LRLFWTLL---------SKQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYI 113
Query: 698 VQVDQV---VQYLGHLNIT-LDDIKKLN------------VIHISGTKGKGSTC-AYCES 740
Q D++ Q N++ L KL +I G G G T A
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA--LD 169
Query: 741 ILRSHGFSTGFFSSPHLIEVRERIKLNG--EPIS--YDKFTKYFWTVYNALHAKRKHAED 796
+ S+ + ++ E + + + + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 797 MPAYFKFLTVMSFY---------VFVKEKPDAVIMEVG----IGGRY-DNTNIIPNTAVV 842
+ A + L Y V + +A + + R+ T+ +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 843 GIT----SLGYDHT-------AVLGNTIEEITMQKAGIMKPNCIAVTSANQR-GPC---- 886
I+ S+ L +++ + P +++ + + R G
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDN 346
Query: 887 -KQI-------LLETS---------RAL--NCVLLEA-----PSILNYRWRGQP------ 916
K + ++E+S R + + +L+ W
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 917 ----------LDEDWKSTVQSINISLAIQLAYLWMFRMNKSAEL-KSVIDKFLAEMRVSS 965
+++ K + SI +I L ++ L +S++D + S
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIP---SIYLELK--VKLENEYALHRSIVDHYNIPKTFDS 461
Query: 966 PNETPGGQ--------GHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDP 1017
+ P GH HL E + + F ++
Sbjct: 462 DDLIPPYLDQYFYSHIGH-----------HLKNIE----HPERMTLFRMVFLDFRF-LEQ 505
Query: 1018 KTYRGIKACVWPGRV----QVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEANPTQS 1073
K A G + Q ++ Y D + + FL K E N S
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNAILDFLPK--IEENLICS 562
Query: 1074 KSSNVIQRIL 1083
K +++++ L
Sbjct: 563 KYTDLLRIAL 572
Score = 54.5 bits (130), Expect = 2e-07
Identities = 69/506 (13%), Positives = 146/506 (28%), Gaps = 140/506 (27%)
Query: 402 EID-----PKTYRGIKACVWPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWFLRKSEAEA 456
EID G W + ++ + F++ + K+ + + E
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINY-----KFLMSPIKTE- 101
Query: 457 SSSRSVSSCPLDPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILV------ 510
S+ + + + N Q +NV+ + KL LL+ + +L+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 511 --TPNILTNESSPDTQ------YG------GNRTIDR--------FGVKLDSRTAAPNGG 548
T + + + + N ++D + +
Sbjct: 162 GKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 549 HEPGRPNVGQGGGG----FQSRSGDNSIRSNANPLSSVDCHNVNDQSNSFHKIATVASAL 604
+ + +S+ +N L + NV + A +A
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC-------LLVLL--NVQN--------AKAWNAF 262
Query: 605 SQRSKVV---EFSSVLDTYNFKYGLDPSKEYHILVTG---------SLHLVGAFLNVLIT 652
+ K++ F V D L + HI + L+ +L+
Sbjct: 263 NLSCKILLTTRFKQVTDF------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 653 --PH-ASRSN----KEIPQSYVDAIKQLNTLQ----SNIRTIRESKLRK-DPVEMQAVQV 700
P +N I +S D + + + + TI ES L +P E +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---- 372
Query: 701 DQVVQYLGHLNITLDDIK-KLNVIHISGTKGKGSTCAYCESILRS-HGFS------TGFF 752
+ L++ ++ + S ++ H +S
Sbjct: 373 ----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKEST 425
Query: 753 SSPHLIEVRERIKLNGE-------------PISYDKFT-------KYFWTVYNALHAKRK 792
S I + ++KL E P ++D +YF++ + H K
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNI 484
Query: 793 HAEDMPAYFK--FLTVMSFYVFVKEK 816
+ F+ FL + F+++K
Sbjct: 485 EHPERMTLFRMVFLD----FRFLEQK 506
Score = 53.3 bits (127), Expect = 5e-07
Identities = 88/613 (14%), Positives = 176/613 (28%), Gaps = 192/613 (31%)
Query: 3 KDDVDVLKELKLNKDAHRKTLPD-------KTEVHHGGYKHGAVTPHAS----------- 44
KD + V ++ + K + D K E+ H ++ A
Sbjct: 19 KDILSVFED-AFVDNFDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTLRLFWTLL 72
Query: 45 RSNKEIPQSYVDAIKQLNT--LQSNIRTIRESKLRKDPVEMQAVQVDQV---VQYLGHLN 99
+E+ Q +V+ + ++N L S I+T E + M Q D++ Q N
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 100 IT-LDDIKKLN------------VIHISGTKGKGSTC-AYCESILRSHGFSTGFFSSPHL 145
++ L KL +I G G G T A + S+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA--LDVCLSYKVQCKMDFKIFW 186
Query: 146 IEVRERIKLNG--EPIS--YDKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFY--- 198
+ ++ E + + + + + + + A + L Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 199 ------VFVKEKPDAVIMEVG----IGGRY-DNTNIIPNTAVVGIT----SLGYDHT--- 240
V + +A + + R+ T+ + I+ S+
Sbjct: 247 LLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 241 ----AVLGNTIEEITMQKAGIMKPNCIAVTSANQR-GPC-----KQILLET-----SRAL 285
L +++ + P +++ + + R G K + + +L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 286 NCVLLEAPSILNYRWRGQPLDEDWKSTVQSINISLAIQLAYLW--------MFRMNKSAE 337
N LE R +I + L+ +W M +NK +
Sbjct: 364 NV--LEPAEYRKMFDRLSVFPPS-------AHIPTIL-LSLIWFDVIKSDVMVVVNKLHK 413
Query: 338 LKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPGGQGHLSFSETPGGQGHLTGNQSSLLM 397
S+++K E +S P+ +L + L H S++
Sbjct: 414 -YSLVEKQPKESTISIPS------IYLELKVKLENEYAL----------H-----RSIV- 450
Query: 398 GPHFEIDPKTYRGIKACVWPGRVQVIRKNNFKYF-------LDGAHTTDSIELCAKWFL- 449
H+ I PKT+ +I +YF L + + L FL
Sbjct: 451 -DHYNI-PKTF-----DSD----DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 450 -----RKSEAEASSSRSVSS---------------CPLDPT------------------- 470
+K ++++ + S C DP
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 471 -QSKSSNVIQRIL 482
SK +++++ L
Sbjct: 560 ICSKYTDLLRIAL 572
Score = 48.3 bits (114), Expect = 2e-05
Identities = 104/697 (14%), Positives = 186/697 (26%), Gaps = 241/697 (34%)
Query: 658 SNKEIPQSYVDAIKQ---LNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITL 714
K+I + DA +Q ++I L K+ ++ + V L TL
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEID-HIIMSKDAVSGTLRLFWTL 71
Query: 715 DDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISY- 773
K + + E +LR + F SP E R+ + I
Sbjct: 72 LS------------KQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 774 -------DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGI 826
F KY + R+ ++ +P ++ G+
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------------RPAKNVLIDGV 158
Query: 827 GGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIA-VTSANQRGP 885
G G T + D V + + M I + N P
Sbjct: 159 LG-------------SGKTWVALD---VCLSYKVQCKM-------DFKIFWLNLKNCNSP 195
Query: 886 CKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTV-QSINISLAIQ-----LAYL 939
ET +LE L Y+ +D +W S S NI L I L L
Sbjct: 196 ------ET-------VLEMLQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 940 WMFRMNKSAEL-------KSVIDKF------LAEMRVSSPNETPGGQGHLSSCETPGGQG 986
+ ++ L + F L R ++ +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----------VTDFLSAATTT 287
Query: 987 HLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKTYRGIKAC-VWPGRVQVIRKNNFKYFLD 1045
H+S LT ++ L+ + + P+ + P R+ +I
Sbjct: 288 HISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSII---------- 333
Query: 1046 GAHTTDSIELCAKW-FLRKSEAEANPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSN 1104
D + A W + + K + +I+ L +L P
Sbjct: 334 AESIRDGL---ATWDNWKHVNCD------KLTTIIESSL-----------NVLEPAEYRK 373
Query: 1105 QFEYILVTP---NILTN--EIRWRGQPLDEDWKSTVQSINISLAIQLAYLWMFRMNKSAE 1159
F+ + V P +I T + W + + SL + +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-------------Q 420
Query: 1160 LKRNQSSLPMGPHFEIDPKT-------------YRGIKA-CVWPGRVQVIRKNNFKYF-- 1203
K + S+P + E+ K Y K +I +YF
Sbjct: 421 PKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSD----DLIPPYLDQYFYS 475
Query: 1204 -----LDGAHTTDSIELCAKWFL------RKSEAEASSSRSVSS---------------C 1237
L + + L FL +K ++++ + S C
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 1238 PLDPT--------------------QSKSSNVIQRIL 1254
DP SK +++++ L
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 44.5 bits (104), Expect = 2e-04
Identities = 113/812 (13%), Positives = 198/812 (24%), Gaps = 293/812 (36%)
Query: 30 HHGGYKHGAVTPHASRSNKEIPQSYVDAIKQ---LNTLQSNIRTIRESKLRKDPVEMQAV 86
HH ++ G K+I + DA +Q ++I L K+ ++ +
Sbjct: 5 HHMDFETGEH----QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEID-HII 55
Query: 87 QVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLI 146
V L TL K + + E +LR + F SP
Sbjct: 56 MSKDAVSGTLRLFWTLLS------------KQEEMVQKFVEEVLRI---NYKFLMSPIKT 100
Query: 147 EVRERIKLNGEPISY--------DKFTKYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFY 198
E R+ + I F KY + R+ ++
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------- 147
Query: 199 VFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIM 258
+P ++ G+ G G T + D V + + M
Sbjct: 148 -----RPAKNVLIDGVLG-------------SGKTWVALD---VCLSYKVQCKM------ 180
Query: 259 KPNCIA-VTSANQRGPCKQILLETSRALNCVLLEAPSILNYRWRGQPLDEDWKSTV-QSI 316
I + N P ET +LE L Y+ +D +W S S
Sbjct: 181 -DFKIFWLNLKNCNSP------ET-------VLEMLQKLLYQ-----IDPNWTSRSDHSS 221
Query: 317 NISLAIQ-----LAYLWMFRMNKSAELKSVIDKFLAEMRVSSPNETPGGQGHLSSCETPG 371
NI L I L L + ++ L V+ V + ++
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLL--VLLN------VQNAK-------AWNA----- 261
Query: 372 GQGHLSFSETPGGQGHLTGNQSSLLMGPHFEIDPKT-----YRGIKACVWPGRVQVIRKN 426
F + K ++ + + I +
Sbjct: 262 -----------------------------FNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 427 NFKYFLDGAHTTDSIELCAKWF------LRKSEAEASSSRSVSSCP-------------L 467
+ + L K+ L + E ++ R +S
Sbjct: 293 HHS---MTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 468 DPTQSKSSNVIQRILVFNVTGERDPTKLLSPLLQSNQFEYILVTPN----------ILTN 517
K + +I+ L +L P F+ + V P ++
Sbjct: 349 HVNCDKLTTIIESSL-----------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 518 ESSPDTQYGGNRTIDRFGVKLDSRTAAPNGGHEPGRPNVGQGGGGFQSRSGDNSIRSNAN 577
+ + KL + +P +S SI
Sbjct: 398 DVIKSD-------VMVVVNKLHKYSLVE------KQPK--------ESTISIPSI----- 431
Query: 578 PLSSVDCHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKE------ 631
+ N+ + H+ S++D YN D
Sbjct: 432 -YLELKVKLENEYA--LHR------------------SIVDHYNIPKTFDSDDLIPPYLD 470
Query: 632 -Y---HILVTGSLHLVGAFLNVLITPHASRSNKEIPQSYVDAIKQLNTLQSNIRTIRESK 687
Y HI HL H R ++D L+ K
Sbjct: 471 QYFYSHI----GHHLKNI-------EHPERMT-LFRMVFLD----FRFLE--------QK 506
Query: 688 LRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILR-SHG 746
+R D A G + TL +K +I +IL
Sbjct: 507 IRHDSTAWNAS---------GSILNTLQQLKFYKP-YI--CDNDPKYERLVNAILDFLPK 554
Query: 747 FSTGFFSSPHLIEVRERIKLNGEPISYDKFTK 778
S + +R + E I + +
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate
ligase; nucleotide-binding, peptidoglycan synthesis,
MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium
tuberculosis} PDB: 2xja_A*
Length = 535
Score = 37.2 bits (87), Expect = 0.038
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTG 138
++L VI I+GT GK +T E+ LR+ G G
Sbjct: 144 ERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAG 176
Score = 37.2 bits (87), Expect = 0.038
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTG 750
++L VI I+GT GK +T E+ LR+ G G
Sbjct: 144 ERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAG 176
Score = 31.8 bits (73), Expect = 1.7
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 19/70 (27%)
Query: 1029 PGRVQVI-RKNNFKYFLDGAHTTDSIE--LCAKWFLRKSEAEANPTQSKSSNVIQRILVF 1085
PGR++ I R F +D AH +++ L L + + +VF
Sbjct: 375 PGRLEQIDRGQGFLALVDYAHKPEALRSVLTT---LAHPDR-------------RLAVVF 418
Query: 1086 NVTGERDPTK 1095
G+RDP K
Sbjct: 419 GAGGDRDPGK 428
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate
ligase; peptidoglycan biosynthesis; HET: KCX UAG API;
2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 498
Score = 35.6 bits (83), Expect = 0.094
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTG 138
L ++ ++GT GK +T + G +
Sbjct: 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISA 138
Score = 35.6 bits (83), Expect = 0.094
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTG 750
L ++ ++GT GK +T + G +
Sbjct: 106 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISA 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 2.6
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 1159 ELKRNQSSLPMGPHFEID--PKTYRGIKACV 1187
LK+ Q+SL + + D P IKA +
Sbjct: 21 ALKKLQASLKL---YADDSAPAL--AIKATM 46
Score = 29.1 bits (64), Expect = 4.8
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 339 KSVIDKFLAEMRVSSPNETPG 359
K + K A +++ + + P
Sbjct: 19 KQALKKLQASLKLYADDSAPA 39
Score = 29.1 bits (64), Expect = 4.8
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 951 KSVIDKFLAEMRVSSPNETPG 971
K + K A +++ + + P
Sbjct: 19 KQALKKLQASLKLYADDSAPA 39
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 30.4 bits (68), Expect = 5.1
Identities = 19/121 (15%), Positives = 24/121 (19%), Gaps = 25/121 (20%)
Query: 120 GSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISY------------DKFTKY 167
TC + G F + R +G P DK
Sbjct: 367 WWTCMIPRQVAEELGQPLPLFIKWDDADYGLRAAEHGYPTVTLPGAAIWHMAWSDKDDAI 426
Query: 168 FWTVY----NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNI 223
W Y N L H + A L +K Y I
Sbjct: 427 DWQAYFHLRNRLVVAAMHWDGPKAQVIGLVRSHLKATLKH---------LACLEYSTVAI 477
Query: 224 I 224
Sbjct: 478 Q 478
Score = 30.4 bits (68), Expect = 5.1
Identities = 19/121 (15%), Positives = 24/121 (19%), Gaps = 25/121 (20%)
Query: 732 GSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISY------------DKFTKY 779
TC + G F + R +G P DK
Sbjct: 367 WWTCMIPRQVAEELGQPLPLFIKWDDADYGLRAAEHGYPTVTLPGAAIWHMAWSDKDDAI 426
Query: 780 FWTVY----NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNI 835
W Y N L H + A L +K Y I
Sbjct: 427 DWQAYFHLRNRLVVAAMHWDGPKAQVIGLVRSHLKATLKH---------LACLEYSTVAI 477
Query: 836 I 836
Sbjct: 478 Q 478
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,623,679
Number of extensions: 1123289
Number of successful extensions: 2348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2312
Number of HSP's successfully gapped: 58
Length of query: 1255
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1150
Effective length of database: 3,770,088
Effective search space: 4335601200
Effective search space used: 4335601200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)