RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15432
(1255 letters)
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase
{Thermotoga maritima [TaxId: 2336]}
Length = 296
Score = 90.1 bits (222), Expect = 4e-20
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 53 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 112
+Y++ ++ L K V+ ++ ++ LG+ + + IH
Sbjct: 5 AYLEVLRYL-----------YHKRPMGKVKPGLERISMLLSKLGNPH------LEYKTIH 47
Query: 113 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 172
I GT GKGS +IL S G+ G + SPHL RERI+LN E IS + K + T+
Sbjct: 48 IGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETME 107
Query: 173 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 232
L+ K P++F+ +T M+F F ++ D ++EVG+GGR + + I
Sbjct: 108 PILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRL-DATNVVFPLCSTI 166
Query: 233 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQ----RGPCKQILLETSRALNCV 288
++ DH LG TIE+I +K+GI+K VT + + ++SR
Sbjct: 167 VTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVID 226
Query: 289 LLEAPSILNYRWRGQPLDEDWKSTVQSINISL 320
+ + + + D ++T + + +++
Sbjct: 227 KDFSVKVKSLKLHENRFDYCGENTFEDLVLTM 258
Score = 90.1 bits (222), Expect = 4e-20
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 22/272 (8%)
Query: 665 SYVDAIKQLNTLQSNIRTIRESKLRKDPVEMQAVQVDQVVQYLGHLNITLDDIKKLNVIH 724
+Y++ ++ L K V+ ++ ++ LG+ + + IH
Sbjct: 5 AYLEVLRYL-----------YHKRPMGKVKPGLERISMLLSKLGNPH------LEYKTIH 47
Query: 725 ISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFTKYFWTVY 784
I GT GKGS +IL S G+ G + SPHL RERI+LN E IS + K + T+
Sbjct: 48 IGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETME 107
Query: 785 NALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNIIPNTAVVGI 844
L+ K P++F+ +T M+F F ++ D ++EVG+GGR + + I
Sbjct: 108 PILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRL-DATNVVFPLCSTI 166
Query: 845 TSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQ----RGPCKQILLETSRALNCV 900
++ DH LG TIE+I +K+GI+K VT + + ++SR
Sbjct: 167 VTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVID 226
Query: 901 LLEAPSILNYRWRGQPLDEDWKSTVQSINISL 932
+ + + + D ++T + + +++
Sbjct: 227 KDFSVKVKSLKLHENRFDYCGENTFEDLVLTM 258
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase
{Lactobacillus casei [TaxId: 1582]}
Length = 296
Score = 83.6 bits (205), Expect = 7e-18
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 20/254 (7%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
++ IH++GT GKGS +L + G + G +++P ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96
Query: 166 KYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 224
V AL ++ D F+F+T + ++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 225 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 284
V +T + DH +LG+TI I KAGI+K V + N ++
Sbjct: 157 TPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIP-VVTGNLVPDAAAVVAAKVAT 214
Query: 285 LNC----------VLLEAPSILNYRWRGQPLDEDWKS-------TVQSINISLAIQLAYL 327
V R+ + D Q N+++AIQ A +
Sbjct: 215 TGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKV 274
Query: 328 WMFRMNKSAELKSV 341
+ + +++
Sbjct: 275 YAKQTEWPLTPQNI 288
Score = 83.6 bits (205), Expect = 7e-18
Identities = 62/254 (24%), Positives = 108/254 (42%), Gaps = 20/254 (7%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
++ IH++GT GKGS +L + G + G +++P ++ ERI ++ EPI
Sbjct: 37 QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNERIMIDHEPIPDAALV 96
Query: 778 KYFWTVYNALHAKRKHAEDMPA-YFKFLTVMSFYVFVKEKPDAVIMEVGIGGRYDNTNII 836
V AL ++ D F+F+T + ++ F + + D ++EVGIGG D+TN+I
Sbjct: 97 NAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQVDVAVIEVGIGGDTDSTNVI 156
Query: 837 PNTAVVGITSLGYDHTAVLGNTIEEITMQKAGIMKPNCIAVTSANQRGPCKQILLETSRA 896
V +T + DH +LG+TI I KAGI+K V + N ++
Sbjct: 157 TPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIP-VVTGNLVPDAAAVVAAKVAT 214
Query: 897 LNC----------VLLEAPSILNYRWRGQPLDEDWKS-------TVQSINISLAIQLAYL 939
V R+ + D Q N+++AIQ A +
Sbjct: 215 TGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKV 274
Query: 940 WMFRMNKSAELKSV 953
+ + +++
Sbjct: 275 YAKQTEWPLTPQNI 288
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 47.1 bits (110), Expect = 5e-06
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 106 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 165
L ++ ++GT GK +T + G + + L G+ I + T
Sbjct: 3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPTENTT 55
Query: 166 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 210
V + L A + + K A +
Sbjct: 56 GSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 100
Score = 47.1 bits (110), Expect = 5e-06
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 718 KKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERIKLNGEPISYDKFT 777
L ++ ++GT GK +T + G + + L G+ I + T
Sbjct: 3 DNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPTENTT 55
Query: 778 KYFWTVYNALHAKRKHAEDMPAYFKFLTVMSFYVFVKEKPDAVIM 822
V + L A + + K A +
Sbjct: 56 GSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 100
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase,
C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Length = 129
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 416 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 448
WP R++ I +DGAH D I
Sbjct: 1 WPARLEKISDTP-LIVIDGAHNPDGINGLITAL 32
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 1028 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1060
WP R++ I +DGAH D I
Sbjct: 1 WPARLEKISDTP-LIVIDGAHNPDGINGLITAL 32
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 1188 WPGRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
WP R++ I +DGAH D I
Sbjct: 1 WPARLEKISDTP-LIVIDGAHNPDGINGLITAL 32
Score = 31.4 bits (70), Expect = 0.25
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 622 FKYGLDPSKEYHILVTGSLHLVGAFLNVLI 651
L+ + I++TGSL+L A L+
Sbjct: 99 LAASLNDVPDQPIVITGSLYLASAVRQTLL 128
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 418 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 448
GR +++ KN Y LDGAH E +
Sbjct: 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSL 31
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1030 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1060
GR +++ KN Y LDGAH E +
Sbjct: 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSL 31
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 1190 GRVQVIRKNNFKYFLDGAHTTDSIELCAKWF 1220
GR +++ KN Y LDGAH E +
Sbjct: 1 GRFEILEKNGKMYILDGAHNPHGAESLVRSL 31
Score = 32.1 bits (72), Expect = 0.16
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 584 CHNVNDQSNSFHKIATVASALSQRSKVVEFSSVLDTYNFKYGLDPSKEYHILVTGSLHLV 643
+ + + + +A + +V+E L+ S E +VTGSL LV
Sbjct: 69 TRVPSPRMKDMNSLVDMAKKFFKNVEVIE--DPLEAIE-------STERATVVTGSLFLV 119
Query: 644 GAFLNVLI 651
G L
Sbjct: 120 GYVREFLT 127
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 160
Score = 38.0 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 417 PGRVQVIR-KNNFKYFLDGAHTTDSIELCAKWF 448
GR++V +D AHT D++E +
Sbjct: 2 CGRMEVFTAPGKPTVVVDYAHTPDALEKALQAA 34
Score = 38.0 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1029 PGRVQVIR-KNNFKYFLDGAHTTDSIELCAKWF 1060
GR++V +D AHT D++E +
Sbjct: 2 CGRMEVFTAPGKPTVVVDYAHTPDALEKALQAA 34
Score = 38.0 bits (87), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1189 PGRVQVIR-KNNFKYFLDGAHTTDSIELCAKWF 1220
GR++V +D AHT D++E +
Sbjct: 2 CGRMEVFTAPGKPTVVVDYAHTPDALEKALQAA 34
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 36.2 bits (82), Expect = 0.013
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 98 LNITLDDIKKLN--VIHISGTKGKGSTCAYCESILRSHGFSTGFF 140
L+ D +K+ ++GT GK +T A +L+ S F
Sbjct: 2 LHYFRDTLKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF 46
Score = 36.2 bits (82), Expect = 0.013
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 710 LNITLDDIKKLN--VIHISGTKGKGSTCAYCESILRSHGFSTGFF 752
L+ D +K+ ++GT GK +T A +L+ S F
Sbjct: 2 LHYFRDTLKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF 46
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 35.4 bits (80), Expect = 0.026
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 109 NVIHISGTKGKGSTCAYCESILRSHGFSTG 138
V+ ++G+ GK S +IL G +
Sbjct: 3 RVVALTGSSGKTSVKEMTAAILSQCGNTLY 32
Score = 35.4 bits (80), Expect = 0.026
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 721 NVIHISGTKGKGSTCAYCESILRSHGFSTG 750
V+ ++G+ GK S +IL G +
Sbjct: 3 RVVALTGSSGKTSVKEMTAAILSQCGNTLY 32
>d2jfga3 c.72.2.1 (A:94-297)
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 35.1 bits (79), Expect = 0.028
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 107 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGF 139
+ ++ I+G+ GK + + ++ G + G
Sbjct: 10 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGV 42
Score = 35.1 bits (79), Expect = 0.028
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 719 KLNVIHISGTKGKGSTCAYCESILRSHGFSTGF 751
+ ++ I+G+ GK + + ++ G + G
Sbjct: 10 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGV 42
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 34.4 bits (78), Expect = 0.046
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 93 QYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERI 152
Q L + ++ + I ++GT GK +T A I F + + +
Sbjct: 3 QMLAEI------MRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA 56
Query: 153 KLNG 156
L
Sbjct: 57 HLGA 60
Score = 34.4 bits (78), Expect = 0.046
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 705 QYLGHLNITLDDIKKLNVIHISGTKGKGSTCAYCESILRSHGFSTGFFSSPHLIEVRERI 764
Q L + ++ + I ++GT GK +T A I F + + +
Sbjct: 3 QMLAEI------MRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA 56
Query: 765 KLNG 768
L
Sbjct: 57 HLGA 60
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 151
Score = 27.6 bits (60), Expect = 6.5
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 417 PGRVQVIRK---NNFKYFLDGAHTTDSIELCAKWF 448
R + N D AHT D I +
Sbjct: 3 HRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTA 37
Score = 27.6 bits (60), Expect = 6.5
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 1029 PGRVQVIRK---NNFKYFLDGAHTTDSIELCAKWF 1060
R + N D AHT D I +
Sbjct: 3 HRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTA 37
Score = 27.6 bits (60), Expect = 6.5
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 1189 PGRVQVIRK---NNFKYFLDGAHTTDSIELCAKWF 1220
R + N D AHT D I +
Sbjct: 3 HRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTA 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0395 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,571,873
Number of extensions: 215650
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 30
Length of query: 1255
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1159
Effective length of database: 1,089,516
Effective search space: 1262749044
Effective search space used: 1262749044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.0 bits)