Query psy15437
Match_columns 143
No_of_seqs 168 out of 1957
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 21:03:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wi3_A DNA-binding protein SAT 99.9 3.2E-22 1.1E-26 107.8 3.4 56 87-142 2-58 (71)
2 1wh5_A ZF-HD homeobox family p 99.8 8.2E-20 2.8E-24 104.3 4.9 55 88-142 13-71 (80)
3 1wh7_A ZF-HD homeobox family p 99.8 7.4E-20 2.5E-24 104.3 4.6 55 87-142 12-71 (80)
4 2kt0_A Nanog, homeobox protein 99.8 4.3E-19 1.5E-23 102.5 5.5 57 86-142 16-72 (84)
5 2dmt_A Homeobox protein BARH-l 99.8 5.7E-19 1.9E-23 101.1 5.0 56 87-142 12-67 (80)
6 2cra_A Homeobox protein HOX-B1 99.8 3.7E-19 1.3E-23 99.4 4.0 54 89-142 4-57 (70)
7 2rgt_A Fusion of LIM/homeobox 99.8 3.2E-20 1.1E-24 120.7 -1.0 100 2-119 63-163 (169)
8 2djn_A Homeobox protein DLX-5; 99.8 5.8E-19 2E-23 98.6 4.0 54 89-142 4-57 (70)
9 2l3k_A Rhombotin-2, linker, LI 99.8 1.8E-18 6.1E-23 106.9 6.5 75 1-75 3-79 (123)
10 1nk2_P Homeobox protein VND; h 99.8 6.8E-19 2.3E-23 100.0 4.3 56 87-142 4-59 (77)
11 2dmu_A Homeobox protein goosec 99.8 6.3E-19 2.1E-23 98.4 3.9 53 90-142 5-57 (70)
12 2da2_A Alpha-fetoprotein enhan 99.7 7.1E-19 2.4E-23 98.2 3.9 55 88-142 3-57 (70)
13 2da3_A Alpha-fetoprotein enhan 99.7 5.4E-19 1.9E-23 101.3 3.4 56 87-142 12-67 (80)
14 2hdd_A Protein (engrailed home 99.7 5E-19 1.7E-23 96.2 2.6 51 92-142 3-53 (61)
15 2da1_A Alpha-fetoprotein enhan 99.7 6.2E-19 2.1E-23 98.5 2.9 54 89-142 4-57 (70)
16 2cue_A Paired box protein PAX6 99.7 1.4E-18 4.7E-23 99.4 4.1 53 90-142 5-57 (80)
17 2e1o_A Homeobox protein PRH; D 99.7 1.5E-18 5.2E-23 96.9 4.1 53 90-142 5-57 (70)
18 2h1k_A IPF-1, pancreatic and d 99.7 8.1E-19 2.8E-23 96.0 2.9 51 92-142 3-53 (63)
19 3a01_A Homeodomain-containing 99.7 2E-18 7E-23 101.3 4.7 57 86-142 11-67 (93)
20 1x61_A Thyroid receptor intera 99.7 4.7E-18 1.6E-22 95.5 6.0 67 2-69 3-69 (72)
21 1b8i_A Ultrabithorax, protein 99.7 9.8E-19 3.3E-23 100.2 3.2 55 88-142 16-70 (81)
22 2dms_A Homeobox protein OTX2; 99.7 1.7E-18 5.9E-23 99.1 4.1 54 89-142 4-57 (80)
23 1ig7_A Homeotic protein MSX-1; 99.7 1.1E-18 3.7E-23 94.0 3.1 50 93-142 1-50 (58)
24 1bw5_A ISL-1HD, insulin gene e 99.7 1.1E-18 3.9E-23 96.3 3.2 52 91-142 2-53 (66)
25 2vi6_A Homeobox protein nanog; 99.7 8.3E-19 2.8E-23 95.7 2.5 52 91-142 2-53 (62)
26 2dmq_A LIM/homeobox protein LH 99.7 2E-18 6.7E-23 98.9 4.1 54 89-142 4-57 (80)
27 3rkq_A Homeobox protein NKX-2. 99.7 1.5E-18 5.2E-23 93.5 3.5 51 92-142 2-52 (58)
28 1zq3_P PRD-4, homeotic bicoid 99.7 1.6E-18 5.6E-23 96.2 3.3 51 92-142 2-52 (68)
29 1puf_A HOX-1.7, homeobox prote 99.7 2.9E-18 9.8E-23 97.4 4.3 55 88-142 9-63 (77)
30 2l7z_A Homeobox protein HOX-A1 99.7 2.7E-18 9.1E-23 96.6 4.2 53 90-142 5-57 (73)
31 2da4_A Hypothetical protein DK 99.7 8E-19 2.7E-23 100.5 2.1 55 88-142 4-62 (80)
32 1akh_A Protein (mating-type pr 99.7 9.3E-19 3.2E-23 95.2 2.1 53 90-142 3-55 (61)
33 2m0c_A Homeobox protein arista 99.7 2.9E-18 1E-22 97.0 4.2 55 88-142 5-59 (75)
34 1jgg_A Segmentation protein EV 99.7 1.7E-18 5.7E-23 93.9 2.9 50 93-142 2-51 (60)
35 1fjl_A Paired protein; DNA-bin 99.7 3.1E-18 1.1E-22 98.2 3.3 54 89-142 15-68 (81)
36 2ecc_A Homeobox and leucine zi 99.7 3.9E-18 1.3E-22 95.4 3.5 48 95-142 6-53 (76)
37 1x4k_A Skeletal muscle LIM-pro 99.7 1E-17 3.6E-22 94.0 5.3 65 1-66 2-66 (72)
38 1ahd_P Antennapedia protein mu 99.7 1.8E-18 6.2E-23 96.0 2.0 51 92-142 2-52 (68)
39 1ftt_A TTF-1 HD, thyroid trans 99.7 4.8E-18 1.6E-22 94.3 3.0 51 92-142 2-52 (68)
40 1wyh_A SLIM 2, skeletal muscle 99.7 1.6E-17 5.5E-22 93.3 5.2 65 1-66 2-66 (72)
41 2r5y_A Homeotic protein sex co 99.7 4.4E-18 1.5E-22 99.1 2.9 55 88-142 24-78 (88)
42 2k40_A Homeobox expressed in E 99.7 6.3E-18 2.2E-22 93.6 3.2 50 93-142 2-51 (67)
43 1yz8_P Pituitary homeobox 2; D 99.7 1.9E-18 6.5E-23 95.9 0.8 52 91-142 2-53 (68)
44 1x68_A FHL5 protein; four-and- 99.7 7.4E-18 2.5E-22 95.6 3.1 65 1-66 2-68 (76)
45 2dn0_A Zinc fingers and homeob 99.7 9.2E-18 3.2E-22 95.1 3.4 53 90-142 6-58 (76)
46 1x2n_A Homeobox protein pknox1 99.7 1.8E-17 6.1E-22 93.2 3.9 54 89-142 4-60 (73)
47 2da5_A Zinc fingers and homeob 99.7 1.9E-17 6.5E-22 93.5 4.0 49 94-142 9-57 (75)
48 3f6q_B LIM and senescent cell 99.7 2.9E-17 1E-21 92.1 4.8 63 2-65 9-71 (72)
49 2ly9_A Zinc fingers and homeob 99.7 1.9E-17 6.5E-22 93.4 3.9 52 91-142 5-56 (74)
50 1x4l_A Skeletal muscle LIM-pro 99.7 1.8E-17 6E-22 93.1 3.7 64 2-66 3-68 (72)
51 1b72_A Protein (homeobox prote 99.7 1.1E-17 3.7E-22 99.1 2.9 54 89-142 31-84 (97)
52 3a02_A Homeobox protein arista 99.7 9E-18 3.1E-22 90.9 2.3 48 95-142 2-49 (60)
53 3nar_A ZHX1, zinc fingers and 99.7 1.2E-17 4.1E-22 98.7 2.9 54 89-142 22-75 (96)
54 1x63_A Skeletal muscle LIM-pro 99.7 6.3E-17 2.2E-21 93.0 5.5 64 2-66 13-76 (82)
55 3a03_A T-cell leukemia homeobo 99.7 1.3E-17 4.5E-22 89.0 2.2 46 97-142 2-47 (56)
56 1nyp_A Pinch protein; LIM doma 99.7 4.1E-17 1.4E-21 90.1 4.1 63 1-66 2-64 (66)
57 2hi3_A Homeodomain-only protei 99.7 2.5E-17 8.7E-22 92.6 3.3 50 93-142 3-53 (73)
58 1uhs_A HOP, homeodomain only p 99.7 2.8E-17 9.5E-22 92.2 3.3 49 94-142 3-52 (72)
59 1wig_A KIAA1808 protein; LIM d 99.7 6.3E-17 2.1E-21 91.0 4.7 63 2-66 3-65 (73)
60 1du6_A PBX1, homeobox protein 99.7 2.1E-17 7.1E-22 90.7 2.6 52 91-142 2-56 (64)
61 1g47_A Pinch protein; LIM doma 99.7 4E-17 1.4E-21 92.8 3.8 65 2-67 9-73 (77)
62 2ehe_A Four and A half LIM dom 99.7 5.8E-17 2E-21 93.2 3.7 66 1-67 12-77 (82)
63 1puf_B PRE-B-cell leukemia tra 99.7 5.4E-17 1.9E-21 91.2 3.3 50 93-142 2-54 (73)
64 2dmn_A Homeobox protein TGIF2L 99.6 1.1E-16 3.6E-21 92.0 4.2 54 89-142 4-60 (83)
65 2cur_A Skeletal muscle LIM-pro 99.6 2E-16 6.9E-21 88.0 5.2 63 1-66 2-64 (69)
66 2egq_A FHL1 protein; LIM domai 99.6 2.4E-16 8.1E-21 89.6 5.4 61 2-63 13-76 (77)
67 2cuf_A FLJ21616 protein; homeo 99.6 7E-17 2.4E-21 95.2 3.2 54 89-142 4-72 (95)
68 2cup_A Skeletal muscle LIM-pro 99.6 1.2E-16 4.1E-21 95.4 4.1 75 1-76 2-77 (101)
69 2da6_A Hepatocyte nuclear fact 99.6 1.3E-16 4.5E-21 93.8 4.0 55 88-142 2-77 (102)
70 3nau_A Zinc fingers and homeob 99.6 4.2E-17 1.4E-21 88.1 1.7 44 99-142 11-54 (66)
71 2ecb_A Zinc fingers and homeob 99.6 1.7E-16 5.6E-21 91.8 4.0 45 98-142 17-61 (89)
72 2iyb_E Testin, TESS, TES; LIM 99.6 2.9E-16 1E-20 86.3 4.8 60 3-63 1-63 (65)
73 1x6a_A LIMK-2, LIM domain kina 99.6 2.7E-16 9.2E-21 90.2 4.8 64 1-66 12-76 (81)
74 2d8z_A Four and A half LIM dom 99.6 2.4E-16 8.3E-21 87.9 4.4 62 2-66 3-64 (70)
75 2d8x_A Protein pinch; LIM doma 99.6 5.1E-16 1.7E-20 86.6 5.7 62 2-66 3-64 (70)
76 1lfb_A Liver transcription fac 99.6 7.8E-17 2.7E-21 95.1 2.4 55 88-142 5-80 (99)
77 1m3v_A FLIN4, fusion of the LI 99.6 1.9E-16 6.6E-21 97.6 4.0 78 2-80 3-84 (122)
78 1k61_A Mating-type protein alp 99.6 1.3E-16 4.5E-21 86.3 2.8 47 96-142 2-51 (60)
79 1e3o_C Octamer-binding transcr 99.6 1E-16 3.4E-21 103.0 2.7 55 88-142 97-151 (160)
80 1au7_A Protein PIT-1, GHF-1; c 99.6 1.3E-16 4.3E-21 101.0 2.9 56 87-142 82-137 (146)
81 1a7i_A QCRP2 (LIM1); LIM domai 99.6 3.1E-16 1.1E-20 89.9 4.2 70 3-74 6-76 (81)
82 2e19_A Transcription factor 8; 99.6 2.6E-16 9E-21 85.9 3.5 45 98-142 9-53 (64)
83 2cu8_A Cysteine-rich protein 2 99.6 6E-16 2.1E-20 87.7 5.1 63 2-66 7-70 (76)
84 2xqn_T Testin, TESS; metal-bin 99.6 4.9E-16 1.7E-20 96.3 5.1 74 2-77 1-75 (126)
85 1b72_B Protein (PBX1); homeodo 99.6 2E-16 6.9E-21 91.9 3.0 50 93-142 2-54 (87)
86 2cqx_A LAG1 longevity assuranc 99.6 6.1E-17 2.1E-21 90.5 0.7 48 95-142 11-59 (72)
87 1mnm_C Protein (MAT alpha-2 tr 99.6 2.5E-16 8.4E-21 91.4 3.3 53 90-142 25-80 (87)
88 2l4z_A DNA endonuclease RBBP8, 99.6 3.3E-16 1.1E-20 96.5 3.9 63 2-65 59-122 (123)
89 2dmp_A Zinc fingers and homeob 99.6 5.5E-16 1.9E-20 90.2 4.5 47 96-142 17-63 (89)
90 2cuq_A Four and A half LIM dom 99.6 7.5E-16 2.6E-20 88.1 5.1 62 2-66 13-74 (80)
91 2dar_A PDZ and LIM domain prot 99.6 6.5E-16 2.2E-20 90.3 4.8 62 2-66 23-84 (90)
92 3d1n_I POU domain, class 6, tr 99.6 3.7E-16 1.3E-20 99.5 3.9 54 89-142 90-143 (151)
93 1x3h_A Leupaxin; paxillin fami 99.6 8.7E-16 3E-20 87.8 5.0 62 2-66 13-74 (80)
94 2l9r_A Homeobox protein NKX-3. 99.6 2.8E-16 9.6E-21 86.8 2.5 47 96-142 8-54 (69)
95 3l1p_A POU domain, class 5, tr 99.6 4.6E-16 1.6E-20 99.4 3.6 53 90-142 94-146 (155)
96 1le8_B Mating-type protein alp 99.6 4.1E-16 1.4E-20 89.7 2.8 49 94-142 4-55 (83)
97 2xsd_C POU domain, class 3, tr 99.6 2.6E-16 8.9E-21 101.3 2.2 54 89-142 96-149 (164)
98 2cor_A Pinch protein; LIM doma 99.6 8.5E-16 2.9E-20 87.7 4.0 62 2-67 13-74 (79)
99 2d5v_A Hepatocyte nuclear fact 99.6 3.7E-16 1.3E-20 100.9 2.7 55 88-142 93-147 (164)
100 2d8y_A Eplin protein; LIM doma 99.6 1.1E-15 3.8E-20 89.5 4.2 69 3-73 14-82 (91)
101 2dj7_A Actin-binding LIM prote 99.6 2.2E-15 7.7E-20 86.0 5.2 60 4-66 15-74 (80)
102 2da7_A Zinc finger homeobox pr 99.6 3.7E-16 1.3E-20 84.8 1.8 42 101-142 14-55 (71)
103 1x2m_A LAG1 longevity assuranc 99.6 2.5E-16 8.7E-21 85.3 1.0 41 102-142 10-51 (64)
104 1iml_A CRIP, cysteine rich int 99.6 1.8E-15 6.2E-20 85.7 4.5 66 5-72 1-68 (76)
105 1x64_A Alpha-actinin-2 associa 99.6 3E-15 1E-19 87.2 4.8 61 3-66 24-84 (89)
106 2dlo_A Thyroid receptor-intera 99.6 3E-15 1E-19 85.8 4.2 62 2-66 13-75 (81)
107 1x62_A C-terminal LIM domain p 99.6 1.2E-15 4.2E-20 87.0 2.4 61 3-66 14-74 (79)
108 1j2o_A FLIN2, fusion of rhombo 99.5 5.4E-15 1.9E-19 90.0 4.8 64 4-68 3-67 (114)
109 1rut_X Flinc4, fusion protein 99.5 3.3E-15 1.1E-19 98.5 4.0 75 2-77 3-81 (188)
110 2xjy_A Rhombotin-2; oncoprotei 99.5 7.4E-15 2.5E-19 91.5 5.1 66 2-67 62-129 (131)
111 2xjy_A Rhombotin-2; oncoprotei 99.5 1E-14 3.4E-19 90.9 5.2 73 4-77 2-78 (131)
112 1v6g_A Actin binding LIM prote 99.5 2.5E-14 8.4E-19 81.9 5.2 62 2-65 13-74 (81)
113 2co8_A NEDD9 interacting prote 99.5 2.8E-15 9.6E-20 86.1 0.5 61 4-66 15-77 (82)
114 3k2a_A Homeobox protein MEIS2; 99.5 1.3E-14 4.5E-19 79.9 2.2 45 98-142 4-51 (67)
115 1rut_X Flinc4, fusion protein 99.5 1.6E-14 5.4E-19 95.2 2.7 66 2-67 65-132 (188)
116 2xqn_T Testin, TESS; metal-bin 99.5 5E-14 1.7E-18 87.2 4.5 62 2-64 61-124 (126)
117 2rgt_A Fusion of LIM/homeobox 99.4 1.2E-13 4.1E-18 89.6 5.3 71 4-77 6-77 (169)
118 2jtn_A LIM domain-binding prot 99.4 2.1E-13 7.3E-18 89.4 6.0 71 4-77 60-131 (182)
119 1ic8_A Hepatocyte nuclear fact 99.4 1.3E-14 4.4E-19 95.3 -0.2 55 88-142 111-186 (194)
120 2jtn_A LIM domain-binding prot 99.4 2.5E-13 8.5E-18 89.1 5.2 63 2-64 117-180 (182)
121 2h8r_A Hepatocyte nuclear fact 99.4 6.8E-14 2.3E-18 92.8 2.5 55 88-142 138-213 (221)
122 1b8t_A Protein (CRP1); LIM dom 99.4 2.2E-13 7.6E-18 90.0 4.8 69 5-75 116-185 (192)
123 1b8t_A Protein (CRP1); LIM dom 99.3 1.3E-12 4.4E-17 86.3 4.9 62 4-67 7-68 (192)
124 2lk2_A Homeobox protein TGIF1; 99.3 8.3E-13 2.8E-17 75.8 1.4 47 96-142 9-58 (89)
125 1mh3_A Maltose binding-A1 home 99.1 9.4E-12 3.2E-16 90.7 1.9 49 94-142 367-415 (421)
126 2cup_A Skeletal muscle LIM-pro 98.9 1.4E-09 5E-14 64.4 3.4 39 1-39 63-101 (101)
127 1zfo_A LAsp-1; LIM domain, zin 98.4 1.3E-07 4.3E-12 43.6 1.3 29 4-33 3-31 (31)
128 1m3v_A FLIN4, fusion of the LI 96.6 0.00018 6.2E-09 43.7 -1.2 22 44-65 93-114 (122)
129 2ys9_A Homeobox and leucine zi 96.4 0.0009 3.1E-08 36.1 0.9 37 104-140 18-54 (70)
130 1j2o_A FLIN2, fusion of rhombo 93.3 0.026 8.8E-07 33.5 1.0 59 6-64 32-105 (114)
131 2glo_A Brinker CG9653-PA; prot 75.8 1 3.4E-05 23.0 1.0 45 96-141 3-47 (59)
132 2elh_A CG11849-PA, LD40883P; s 75.2 2.8 9.7E-05 23.1 2.9 42 94-140 18-59 (87)
133 1weo_A Cellulose synthase, cat 71.6 4.7 0.00016 22.7 3.1 9 55-63 44-52 (93)
134 2dmj_A Poly (ADP-ribose) polym 71.6 1.3 4.5E-05 25.9 0.9 14 5-18 26-39 (106)
135 1v9x_A Poly (ADP-ribose) polym 70.9 1.2 4.1E-05 26.4 0.7 30 5-34 21-60 (114)
136 2jpf_A Hypothetical protein; a 69.1 0.27 9.1E-06 27.8 -2.3 8 136-143 54-61 (127)
137 2cs3_A Protein C14ORF4, MY039 67.9 1.8 6.2E-05 23.9 0.9 10 33-42 16-25 (93)
138 2das_A Zinc finger MYM-type pr 66.0 5.4 0.00018 20.6 2.4 33 33-65 21-55 (62)
139 2vpb_A Hpygo1, pygopus homolog 65.4 2.4 8.2E-05 22.3 1.1 28 6-33 10-40 (65)
140 1tc3_C Protein (TC3 transposas 64.8 3.7 0.00013 19.2 1.7 39 98-141 5-43 (51)
141 1uw0_A DNA ligase III; DNA rep 62.7 2.4 8.2E-05 25.2 0.8 14 5-18 16-29 (117)
142 1t1h_A Gspef-atpub14, armadill 60.2 11 0.00039 19.8 3.3 33 32-66 8-40 (78)
143 3odc_A Poly [ADP-ribose] polym 60.0 2.4 8.2E-05 25.0 0.5 14 5-18 20-33 (111)
144 3od8_A Poly [ADP-ribose] polym 59.4 2.2 7.6E-05 25.4 0.3 14 5-18 39-52 (116)
145 1hlv_A CENP-B, major centromer 56.9 8.1 0.00028 22.8 2.5 44 95-141 4-47 (131)
146 2eqg_A Tumor necrosis factor, 53.6 5.3 0.00018 19.2 1.0 20 46-65 19-39 (49)
147 2gvi_A Conserved hypothetical 52.2 6.4 0.00022 25.7 1.6 30 33-63 173-202 (204)
148 1wj7_A Hypothetical protein (R 52.2 23 0.00077 20.6 3.7 45 91-136 12-57 (104)
149 1vq8_U 50S ribosomal protein L 51.1 7 0.00024 20.7 1.3 24 5-28 4-29 (66)
150 2cs2_A Poly [ADP-ribose] polym 51.0 4 0.00014 24.9 0.4 14 5-18 28-41 (134)
151 2jtd_A Myomesin-1, skelemin; i 50.9 0.06 2.1E-06 32.6 -7.4 43 98-141 18-60 (142)
152 2kvr_A Ubiquitin carboxyl-term 47.4 11 0.00036 22.8 1.9 19 122-140 72-90 (130)
153 2jn6_A Protein CGL2762, transp 47.3 14 0.00048 20.5 2.4 41 96-140 3-44 (97)
154 2c2l_A CHIP, carboxy terminus 46.7 23 0.0008 23.6 3.8 36 29-66 205-240 (281)
155 1jko_C HIN recombinase, DNA-in 46.3 7.8 0.00027 18.2 1.0 21 122-142 24-44 (52)
156 2ysl_A Tripartite motif-contai 46.3 13 0.00043 19.3 2.0 32 32-65 20-51 (73)
157 3j21_V 50S ribosomal protein L 45.9 14 0.00047 19.6 2.0 14 5-18 5-18 (66)
158 3fl2_A E3 ubiquitin-protein li 44.6 17 0.0006 21.2 2.6 32 33-66 53-84 (124)
159 1p4w_A RCSB; solution structur 44.3 13 0.00044 21.1 1.9 40 96-141 32-71 (99)
160 2e5r_A Dystrobrevin alpha; ZZ 43.6 33 0.0011 17.7 3.3 36 25-63 6-44 (63)
161 1ku3_A Sigma factor SIGA; heli 42.8 14 0.00049 19.2 1.8 41 98-139 10-50 (73)
162 2ds5_A CLPX, ATP-dependent CLP 42.7 28 0.00096 17.3 2.8 33 33-65 12-44 (51)
163 1ovx_A ATP-dependent CLP prote 42.6 25 0.00087 18.6 2.7 34 33-66 19-52 (67)
164 1jm7_A BRCA1, breast cancer ty 42.4 27 0.00092 19.7 3.2 32 33-66 22-53 (112)
165 1jjd_A Metallothionein, SMTA; 42.2 17 0.00057 18.5 1.9 27 34-61 9-36 (55)
166 2xb1_A Pygopus homolog 2, B-ce 41.9 16 0.00055 21.1 2.1 28 6-33 5-35 (105)
167 2x48_A CAG38821; archeal virus 41.1 4.7 0.00016 19.8 -0.3 21 122-142 34-54 (55)
168 2o8x_A Probable RNA polymerase 40.7 16 0.00054 18.5 1.8 38 98-140 15-52 (70)
169 1iuf_A Centromere ABP1 protein 40.2 30 0.001 20.9 3.2 44 93-139 6-56 (144)
170 3nw0_A Non-structural maintena 40.1 7.2 0.00025 26.2 0.4 12 5-16 181-192 (238)
171 2zkr_u 60S ribosomal protein L 40.0 12 0.00041 23.4 1.4 25 5-29 4-30 (157)
172 2ecw_A Tripartite motif-contai 39.9 42 0.0014 17.6 3.6 34 32-67 19-52 (85)
173 4a17_T RPL24, 60S ribosomal pr 39.8 9.9 0.00034 23.8 0.9 24 5-28 6-31 (158)
174 2p7v_B Sigma-70, RNA polymeras 39.3 18 0.00061 18.5 1.8 41 98-139 5-45 (68)
175 4ayb_P DNA-directed RNA polyme 39.2 16 0.00054 17.9 1.4 13 6-18 5-17 (48)
176 3hug_A RNA polymerase sigma fa 38.8 17 0.00057 20.0 1.8 38 98-140 37-74 (92)
177 3fmy_A HTH-type transcriptiona 38.5 34 0.0012 17.7 3.0 36 98-140 10-45 (73)
178 1iym_A EL5; ring-H2 finger, ub 38.3 29 0.00099 16.6 2.5 13 5-17 6-18 (55)
179 2lo3_A SAGA-associated factor 38.1 8.1 0.00028 18.4 0.3 11 6-16 19-29 (44)
180 3ulq_B Transcriptional regulat 38.0 12 0.00039 20.8 1.0 40 95-140 26-65 (90)
181 2k27_A Paired box protein PAX- 38.0 62 0.0021 19.5 4.5 40 97-141 24-63 (159)
182 2ckl_B Ubiquitin ligase protei 37.2 28 0.00095 21.5 2.8 42 32-75 54-100 (165)
183 3izc_Z 60S ribosomal protein R 36.3 12 0.00042 23.4 0.9 24 5-28 4-29 (155)
184 2ecy_A TNF receptor-associated 36.1 22 0.00074 18.0 1.9 32 32-65 15-46 (66)
185 1z6u_A NP95-like ring finger p 36.0 28 0.00095 21.3 2.6 32 33-66 79-110 (150)
186 4av1_A Poly [ADP-ribose] polym 35.6 7.8 0.00027 25.8 0.0 14 5-18 144-157 (223)
187 1twf_J DNA-directed RNA polyme 34.7 18 0.00063 19.3 1.4 13 3-15 3-15 (70)
188 3plu_A Ubiquitin-like modifier 34.7 26 0.00087 19.9 2.1 22 121-142 47-68 (93)
189 1rzs_A Antirepressor, regulato 34.6 11 0.00038 19.1 0.5 19 122-140 13-31 (61)
190 2jml_A DNA binding domain/tran 33.6 7.2 0.00025 21.1 -0.4 19 122-140 8-26 (81)
191 2ysj_A Tripartite motif-contai 33.5 43 0.0015 16.6 2.8 33 32-66 20-52 (63)
192 2cqr_A RSGI RUH-043, DNAJ homo 32.6 44 0.0015 17.8 2.7 46 93-138 15-61 (73)
193 1tty_A Sigma-A, RNA polymerase 32.5 25 0.00087 19.0 1.8 39 98-139 18-58 (87)
194 3iz5_Z 60S ribosomal protein L 32.1 16 0.00054 23.0 1.0 24 5-28 6-31 (162)
195 2d8s_A Cellular modulator of i 31.8 40 0.0014 18.2 2.5 10 6-15 17-26 (80)
196 1vq8_Z 50S ribosomal protein L 31.6 23 0.0008 19.5 1.5 28 6-43 29-56 (83)
197 2yu4_A E3 SUMO-protein ligase 31.5 47 0.0016 18.3 2.9 33 33-67 8-41 (94)
198 2djb_A Polycomb group ring fin 31.4 57 0.0019 16.7 4.6 41 33-75 16-60 (72)
199 2yur_A Retinoblastoma-binding 31.4 59 0.002 16.8 4.2 32 33-66 16-48 (74)
200 1je8_A Nitrate/nitrite respons 31.3 16 0.00055 19.7 0.8 39 96-140 19-57 (82)
201 1wil_A KIAA1045 protein; ring 30.6 9.9 0.00034 21.2 -0.1 10 24-33 35-44 (89)
202 1j9i_A GPNU1 DBD;, terminase s 30.6 11 0.00037 19.6 0.0 20 122-141 5-24 (68)
203 2ecv_A Tripartite motif-contai 30.5 62 0.0021 16.9 4.2 34 32-67 19-52 (85)
204 2ecm_A Ring finger and CHY zin 30.2 36 0.0012 16.2 2.1 12 53-64 28-39 (55)
205 1znf_A 31ST zinc finger from X 29.9 21 0.00072 13.4 1.0 10 33-42 2-11 (27)
206 2jny_A Uncharacterized BCR; st 29.7 23 0.0008 18.7 1.3 24 33-60 11-34 (67)
207 2kr4_A Ubiquitin conjugation f 29.7 43 0.0015 18.1 2.5 35 30-66 12-46 (85)
208 1fse_A GERE; helix-turn-helix 29.6 33 0.0011 17.5 1.9 40 96-141 9-48 (74)
209 3o9x_A Uncharacterized HTH-typ 29.1 49 0.0017 19.3 2.9 36 98-140 70-105 (133)
210 2hf1_A Tetraacyldisaccharide-1 28.9 24 0.00084 18.6 1.3 9 6-14 10-18 (68)
211 2jr6_A UPF0434 protein NMA0874 28.7 26 0.00088 18.5 1.3 9 34-42 10-18 (68)
212 2csy_A Zinc finger protein 183 28.5 51 0.0017 17.3 2.6 32 33-66 16-47 (81)
213 1rmd_A RAG1; V(D)J recombinati 28.2 63 0.0022 18.4 3.2 34 32-67 23-56 (116)
214 2kre_A Ubiquitin conjugation f 27.9 49 0.0017 18.6 2.6 34 30-65 27-60 (100)
215 2js4_A UPF0434 protein BB2007; 27.9 24 0.00082 18.8 1.1 10 33-42 9-18 (70)
216 1ard_A Yeast transcription fac 27.9 23 0.00078 13.5 0.9 11 33-43 3-13 (29)
217 3c57_A Two component transcrip 27.8 20 0.00069 19.9 0.9 38 97-140 26-63 (95)
218 2lbz_A Thuricin17, thurincin H 27.8 23 0.0008 14.9 0.8 12 31-42 6-17 (31)
219 3hcs_A TNF receptor-associated 27.6 49 0.0017 20.4 2.8 33 32-66 18-50 (170)
220 2lr8_A CAsp8-associated protei 33.2 13 0.00045 19.8 0.0 23 120-142 37-59 (70)
221 2kvh_A Zinc finger and BTB dom 27.1 19 0.00064 13.7 0.5 11 33-43 4-14 (27)
222 1s7o_A Hypothetical UPF0122 pr 27.0 33 0.0011 19.9 1.7 39 98-141 22-60 (113)
223 2ct0_A Non-SMC element 1 homol 26.9 17 0.00059 19.5 0.4 11 5-15 16-26 (74)
224 1loi_A Cyclic 3',5'-AMP specif 26.7 12 0.00041 15.2 -0.2 10 33-42 6-15 (26)
225 1pft_A TFIIB, PFTFIIBN; N-term 26.0 22 0.00077 17.1 0.8 10 33-42 25-34 (50)
226 2hin_A GP39, repressor protein 26.0 14 0.00048 19.7 -0.0 19 122-140 13-31 (71)
227 3ztg_A E3 ubiquitin-protein li 25.9 52 0.0018 17.8 2.4 33 32-66 13-46 (92)
228 2ct2_A Tripartite motif protei 25.5 67 0.0023 17.0 2.8 34 33-66 16-51 (88)
229 1paa_A Yeast transcription fac 25.2 27 0.00093 13.5 0.9 11 33-43 3-13 (30)
230 2jpc_A SSRB; DNA binding prote 25.1 6 0.0002 19.8 -1.6 18 123-140 17-34 (61)
231 1pdn_C Protein (PRD paired); p 25.0 40 0.0014 19.1 1.9 39 98-141 17-55 (128)
232 2xi8_A Putative transcription 24.4 15 0.0005 18.2 -0.1 20 122-141 17-36 (66)
233 2lvu_A Zinc finger and BTB dom 29.7 16 0.00056 13.7 0.0 10 33-42 3-12 (26)
234 2f42_A STIP1 homology and U-bo 23.6 81 0.0028 20.1 3.2 35 30-66 104-138 (179)
235 2r1j_L Repressor protein C2; p 23.1 16 0.00055 18.2 -0.1 20 122-141 21-40 (68)
236 2kvf_A Zinc finger and BTB dom 23.1 24 0.00083 13.4 0.5 11 33-43 4-14 (28)
237 2pk7_A Uncharacterized protein 23.0 27 0.00092 18.5 0.7 9 6-14 10-18 (69)
238 2epr_A POZ-, at HOOK-, and zin 22.9 8.2 0.00028 17.9 -1.3 9 33-41 13-21 (48)
239 2m0e_A Zinc finger and BTB dom 22.9 30 0.001 13.0 0.8 11 33-43 3-13 (29)
240 1klr_A Zinc finger Y-chromosom 22.9 31 0.0011 13.1 0.9 11 33-43 3-13 (30)
241 2m0f_A Zinc finger and BTB dom 22.1 25 0.00087 13.3 0.5 10 33-42 3-12 (29)
242 1k81_A EIF-2-beta, probable tr 21.9 34 0.0012 15.5 0.9 26 6-35 2-27 (36)
243 1zug_A Phage 434 CRO protein; 21.7 18 0.00061 18.2 -0.1 20 122-141 19-38 (71)
244 2ckl_A Polycomb group ring fin 21.6 79 0.0027 17.7 2.7 33 32-66 15-48 (108)
245 1rik_A E6APC1 peptide; E6-bind 21.6 28 0.00095 13.3 0.5 11 33-43 3-13 (29)
246 1xsv_A Hypothetical UPF0122 pr 21.5 48 0.0017 19.1 1.7 38 98-140 25-62 (113)
247 2i5o_A DNA polymerase ETA; zin 21.3 24 0.00082 16.4 0.3 10 6-15 11-20 (39)
248 3lrq_A E3 ubiquitin-protein li 21.1 73 0.0025 17.7 2.4 32 33-66 23-55 (100)
249 2m0d_A Zinc finger and BTB dom 20.7 28 0.00095 13.3 0.4 10 33-42 4-13 (30)
250 2ect_A Ring finger protein 126 20.7 1E+02 0.0035 15.9 3.7 44 33-76 16-63 (78)
251 1x3u_A Transcriptional regulat 20.6 33 0.0011 17.8 0.8 36 99-140 17-52 (79)
252 2e6s_A E3 ubiquitin-protein li 20.5 58 0.002 17.5 1.8 7 34-40 28-34 (77)
253 2kvg_A Zinc finger and BTB dom 20.5 24 0.00083 13.5 0.2 10 33-42 4-13 (27)
254 1wgm_A Ubiquitin conjugation f 20.4 63 0.0021 18.1 2.0 35 30-66 20-55 (98)
255 1e4u_A Transcriptional repress 20.4 58 0.002 17.4 1.8 33 33-65 12-46 (78)
No 1
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=3.2e-22 Score=107.79 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 87 DGRRGPKRPRTILTTQQRRAFKASFEI-SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 87 ~~~~~~~r~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
++.+.++|.||.++.+|+..|+..|+. ++||+...++.||.+|||++++|||||||
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQN 58 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQN 58 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcc
Confidence 345678899999999999999999999 99999999999999999999999999999
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=8.2e-20 Score=104.26 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEI----SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~----~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+..+.+|.||.|+.+|+..|+..|+. ++||+..++++||..|||++++|||||||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqN 71 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHN 71 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccc
Confidence 44567889999999999999999999 99999999999999999999999999999
No 3
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=7.4e-20 Score=104.25 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 87 DGRRGPKRPRTILTTQQRRAFKASFEI-----SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 87 ~~~~~~~r~R~~~~~~q~~~L~~~f~~-----~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+...+.+|.||.|+.+|+..|+ .|.. ++||+..++++||..|+|++++|||||||
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqN 71 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHN 71 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccc
Confidence 4456678899999999999999 7999 99999999999999999999999999999
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=102.55 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 86 HDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 86 ~~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.....+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 72 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQN 72 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344566778999999999999999999999999999999999999999999999998
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-19 Score=101.06 Aligned_cols=56 Identities=25% Similarity=0.213 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 87 DGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 87 ~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+...+.++.|+.|+..|+..|+..|..++||+..+++.||..|+|++.+|+|||||
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQN 67 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHH
Confidence 34556778999999999999999999999999999999999999999999999998
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.7e-19 Score=99.38 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
....++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQN 57 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 345677899999999999999999999999999999999999999999999998
No 7
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.76 E-value=3.2e-20 Score=120.65 Aligned_cols=100 Identities=26% Similarity=0.613 Sum_probs=79.4
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEe-eCCeeechhhHHHHHHHhhccCCCCCCccc
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKEVEMLQGYAQGIPFDLI 80 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
+|+.+|..|+++|.+.+.++.+.++.||+.||+|..|+.+|..|..|+. .++.+||..||.+.+..
T Consensus 63 ~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~------------- 129 (169)
T 2rgt_A 63 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG------------- 129 (169)
T ss_dssp HHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC-------------
T ss_pred cccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc-------------
Confidence 5789999999999977777899999999999999999999976777765 58899999999887752
Q ss_pred cCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCH
Q psy15437 81 TSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCR 119 (143)
Q Consensus 81 ~~~~~~~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~ 119 (143)
.....+.+|+||.+++.|++.|+..|+.+++|..
T Consensus 130 -----~~~~~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 130 -----GSGGSGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -----C----------EEEECCCCEECCSSCCCCCCCCC
T ss_pred -----cCCCCCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 0011456789999999999999999999999864
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-19 Score=98.57 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=51.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
....++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQN 57 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999998
No 9
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.75 E-value=1.8e-18 Score=106.86 Aligned_cols=75 Identities=21% Similarity=0.610 Sum_probs=65.3
Q ss_pred CCCCc--cccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHHhhccCCCC
Q psy15437 1 MLYVK--KCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEMLQGYAQGI 75 (143)
Q Consensus 1 ~~~~~--~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 75 (143)
.+|+. +|..|+++|...+.++.++++.||+.||+|..|+++|..|..|+.+++.+||..||.+++++..+.+.+.
T Consensus 3 r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~ 79 (123)
T 2l3k_A 3 RLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSG 79 (123)
T ss_dssp SSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCC
T ss_pred hhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCC
Confidence 36787 9999999999777788999999999999999999999767789999999999999999998665554433
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.75 E-value=6.8e-19 Score=100.03 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 87 DGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 87 ~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+...+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQN 59 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 44556778899999999999999999999999999999999999999999999998
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-19 Score=98.45 Aligned_cols=53 Identities=30% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...++.|+.|+.+|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKN 57 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccc
Confidence 44677899999999999999999999999999999999999999999999998
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-19 Score=98.24 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQN 57 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHh
Confidence 3445677899999999999999999999999999999999999999999999998
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-19 Score=101.28 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 87 DGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 87 ~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
....+.++.|+.|+.+|+..|+..|..++||+..+++.||..|||++.+|+|||||
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 67 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQN 67 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHH
Confidence 34566788999999999999999999999999999999999999999999999998
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.74 E-value=5e-19 Score=96.25 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 92 ~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 567899999999999999999999999999999999999999999999998
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=6.2e-19 Score=98.49 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+.+|+..|+..|+.++||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhh
Confidence 345678999999999999999999999999999999999999999999999998
No 16
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.4e-18 Score=99.44 Aligned_cols=53 Identities=28% Similarity=0.232 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...++.|+.|+..|+..|+..|..++||+..+++.||..|||++.+|+|||||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 57 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHH
Confidence 45678899999999999999999999999999999999999999999999998
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.5e-18 Score=96.86 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQN 57 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHh
Confidence 44567899999999999999999999999999999999999999999999998
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=8.1e-19 Score=96.00 Aligned_cols=51 Identities=25% Similarity=0.153 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 92 ~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQN 53 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHh
Confidence 567899999999999999999999999999999999999999999999998
No 19
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=2e-18 Score=101.32 Aligned_cols=57 Identities=21% Similarity=0.175 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 86 HDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 86 ~~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+...+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 67 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQN 67 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHh
Confidence 344556778999999999999999999999999999999999999999999999998
No 20
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=4.7e-18 Score=95.47 Aligned_cols=67 Identities=34% Similarity=0.654 Sum_probs=60.5
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHHhh
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEMLQ 69 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~ 69 (143)
+++.+|..|+++|..++.++.++++.||+.||+|..|+.+| .+..|+.+++.+||..||.+++++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~~~~~~ 69 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVATLESGP 69 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC-TTSCEEESSSCEEEHHHHHHHHHTCS
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcC-CcCcCEeeCCeEECHHHHHHHHccCC
Confidence 57899999999999766688999999999999999999999 57779999999999999999987544
No 21
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.73 E-value=9.8e-19 Score=100.24 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.....++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 70 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQN 70 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 3445678899999999999999999999999999999999999999999999998
No 22
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.7e-18 Score=99.08 Aligned_cols=54 Identities=26% Similarity=0.182 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+..|+..|+..|+.++||+..+++.||..++|++.+|+|||||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKN 57 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHH
Confidence 355678999999999999999999999999999999999999999999999998
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.1e-18 Score=94.00 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhH
Confidence 46899999999999999999999999999999999999999999999998
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=1.1e-18 Score=96.29 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=49.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 91 GPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 91 ~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.++.|+.|+.+|+..|+..|+.++||+..+++.||..+||++.+|+|||||
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQN 53 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 3577899999999999999999999999999999999999999999999998
No 25
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=8.3e-19 Score=95.68 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 91 GPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 91 ~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 53 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQN 53 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHH
Confidence 3567899999999999999999999999999999999999999999999998
No 26
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=98.89 Aligned_cols=54 Identities=33% Similarity=0.368 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+.+|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 57 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQN 57 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHH
Confidence 345678999999999999999999999999999999999999999999999998
No 27
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=93.47 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 92 ~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++.|+.++..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQN 52 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHH
Confidence 456899999999999999999999999999999999999999999999998
No 28
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=1.6e-18 Score=96.15 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 92 ~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 52 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 567899999999999999999999999999999999999999999999998
No 29
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.73 E-value=2.9e-18 Score=97.43 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.+..++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 63 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 63 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3455678999999999999999999999999999999999999999999999998
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.73 E-value=2.7e-18 Score=96.56 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 57 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQN 57 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999998
No 31
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8e-19 Score=100.47 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEIS----PKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~----~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...+.++.|+.|+.+|+..|+..|+.+ +||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqN 62 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGN 62 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHH
Confidence 345677899999999999999999999 9999999999999999999999999998
No 32
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.73 E-value=9.3e-19 Score=95.23 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999998
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-18 Score=97.04 Aligned_cols=55 Identities=27% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 59 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN 59 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHH
Confidence 3455678899999999999999999999999999999999999999999999998
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=1.7e-18 Score=93.87 Aligned_cols=50 Identities=22% Similarity=0.145 Sum_probs=48.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999998
No 35
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=3.1e-18 Score=98.24 Aligned_cols=54 Identities=28% Similarity=0.318 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 68 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQN 68 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999998
No 36
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=3.9e-18 Score=95.41 Aligned_cols=48 Identities=19% Similarity=0.009 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 95 PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 95 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.|..++.+|+..|+..|+.++||+..++++||..|||++++|+|||||
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqN 53 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGD 53 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHh
Confidence 566799999999999999999999999999999999999999999998
No 37
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=1e-17 Score=94.04 Aligned_cols=65 Identities=28% Similarity=0.578 Sum_probs=59.0
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.+|+.+|..|+++|...+.++.+.++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG-TKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCC-SSSEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccC-CCccCccCCeEECHHHHhHHhC
Confidence 4789999999999997677899999999999999999999996 4579999999999999998876
No 38
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=1.8e-18 Score=95.95 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 92 ~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 52 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 52 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHH
Confidence 357899999999999999999999999999999999999999999999998
No 39
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=4.8e-18 Score=94.27 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 92 ~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQN 52 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHH
Confidence 457899999999999999999999999999999999999999999999998
No 40
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.6e-17 Score=93.26 Aligned_cols=65 Identities=26% Similarity=0.585 Sum_probs=58.7
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.+|+.+|..|+++|...+.++.+.++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 2 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG-SRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTT-TSCEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCC-CCccCCcCCeEECHHHHHHHcc
Confidence 4689999999999997666889999999999999999999995 5569999999999999998876
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.70 E-value=4.4e-18 Score=99.06 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.....++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqN 78 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQN 78 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHH
Confidence 3455678999999999999999999999999999999999999999999999998
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.70 E-value=6.3e-18 Score=93.56 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
++.|+.++..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 51 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQN 51 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHh
Confidence 57899999999999999999999999999999999999999999999998
No 43
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=1.9e-18 Score=95.92 Aligned_cols=52 Identities=29% Similarity=0.268 Sum_probs=49.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 91 GPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 91 ~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 53 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKN 53 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999998
No 44
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=7.4e-18 Score=95.62 Aligned_cols=65 Identities=22% Similarity=0.470 Sum_probs=58.2
Q ss_pred CCCCccccccCccccC--CcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGP--DELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~--~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.+|+.+|..|+++|.+ ++.++.++++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLV-GKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCS-SSCEEEETTEEEETTTTCCCCC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCC-CCceEeECCEEECHHHhhhhhC
Confidence 3789999999999995 445789999999999999999999995 7779999999999999988775
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-18 Score=95.09 Aligned_cols=53 Identities=28% Similarity=0.235 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.+.|+.|+.+|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 58 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSD 58 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHH
Confidence 33455689999999999999999999999999999999999999999999998
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.8e-17 Score=93.24 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEI---SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.++..|+..|+..|.. ++||+..+++.||..+||++.+|+|||||
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 60 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFIN 60 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHH
Confidence 3456778999999999999999976 99999999999999999999999999998
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=93.48 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 94 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.|+.++..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSE 57 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHH
Confidence 4567799999999999999999999999999999999999999999998
No 48
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.68 E-value=2.9e-17 Score=92.15 Aligned_cols=63 Identities=25% Similarity=0.635 Sum_probs=57.1
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
+++.+|..|+++|.+.+.++.+.++.||+.||+|..|+.+|..+ .|+.+++.+||..||.++|
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHHHHHT
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHHHHhh
Confidence 56789999999999888778899999999999999999999655 6889999999999998875
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-17 Score=93.38 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=49.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 91 GPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 91 ~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..++.|+.|+.+|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 56 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSD 56 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChh
Confidence 3567899999999999999999999999999999999999999999999998
No 50
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=1.8e-17 Score=93.11 Aligned_cols=64 Identities=19% Similarity=0.454 Sum_probs=57.1
Q ss_pred CCCccccccCccccC--CcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGP--DELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~--~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+++.+|..|+++|.+ ++.++.++++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~c~~~~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV-GRGFLTERDDILCPDCGKDISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT-TSCCEECSSSEECHHHHHTCCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC-CCccEeECCEEEChhHcCcccC
Confidence 578999999999996 456789999999999999999999995 7778999999999999987664
No 51
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.1e-17 Score=99.09 Aligned_cols=54 Identities=22% Similarity=0.155 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
....++.|+.|+..|+..|+..|..++||+..+++.||..|||++.+|+|||||
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqN 84 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQN 84 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHH
Confidence 345677899999999999999999999999999999999999999999999998
No 52
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.68 E-value=9e-18 Score=90.94 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 95 PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 95 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.|+.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 49 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQN 49 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhh
Confidence 578999999999999999999999999999999999999999999998
No 53
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=98.66 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
....++.|+.++..|+..|+..|..++||+..+++.||..|||++.+|+|||||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 75 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGD 75 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchh
Confidence 444567899999999999999999999999999999999999999999999998
No 54
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.3e-17 Score=93.04 Aligned_cols=64 Identities=22% Similarity=0.472 Sum_probs=58.3
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+|+.+|..|+++|.+.+.++.+.++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 13 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 76 (82)
T 1x63_A 13 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG-TGSFFPKGEDFYCVTCHETKFA 76 (82)
T ss_dssp CCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT-TSCEEEETTEEEEHHHHHHHTS
T ss_pred ccCCcCccCCcccccCceEEEECccccccccCchhhCCCccC-CCccEeeCCEEECHHHHHHHhC
Confidence 578999999999997777899999999999999999999996 4569999999999999998875
No 55
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=1.3e-17 Score=88.99 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 97 TILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 97 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
|.|+..|+..|+..|..++||+..+++.||..+||++.+|+|||||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 47 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQN 47 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 5789999999999999999999999999999999999999999998
No 56
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.67 E-value=4.1e-17 Score=90.05 Aligned_cols=63 Identities=22% Similarity=0.576 Sum_probs=56.3
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.+|+.+|+.|+++|. ++ ++.++++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 2 ~~~~~~C~~C~~~I~-~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 2 SMGVPICGACRRPIE-GR-VVNAMGKQWHVEHFVCAKCEKPFL-GHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCCCCEETTTTEECC-SC-EECCTTSBEETTTCBCTTTCCBCS-SSCCEEETTEEECHHHHHHHCS
T ss_pred CcCCCCCcccCCEec-ce-EEEECccccccCcCEECCCCCCCC-CCceEeECCcEECHHHHHHHhC
Confidence 368899999999999 44 688999999999999999999995 6679999999999999988764
No 57
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.5e-17 Score=92.56 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 93 KRPRTILTTQQRRAFKASFEI-SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+.|+.|+..|+..|+..|+. ++||+..+++.||..+||++.+|+|||||
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqN 53 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 53 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 457899999999999999995 99999999999999999999999999998
No 58
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.8e-17 Score=92.18 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 94 RPRTILTTQQRRAFKASFEI-SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 94 r~R~~~~~~q~~~L~~~f~~-~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.|+.|+..|+..|+..|+. ++||+...++.||..+||++.+|+|||||
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 52 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQ 52 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHH
Confidence 47899999999999999996 99999999999999999999999999998
No 59
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.3e-17 Score=91.02 Aligned_cols=63 Identities=17% Similarity=0.429 Sum_probs=56.5
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+|+.+|+.|+++|.. .++.++++.||+.||+|..|+.+|..+..|+.+++.+||..||..+++
T Consensus 3 ~~~~~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 3 SGSSGCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCCSCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred cCcCCcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 689999999999984 367899999999999999999999658889999999999999987553
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.1e-17 Score=90.67 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=49.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 91 GPKRPRTILTTQQRRAFKASF---EISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 91 ~~~r~R~~~~~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..++.|+.|+..|+..|+..| ..++||+..+++.||..+||++.+|++||||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqN 56 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 56 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 356789999999999999999 9999999999999999999999999999998
No 61
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4e-17 Score=92.77 Aligned_cols=65 Identities=26% Similarity=0.634 Sum_probs=58.2
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
+++.+|..|+++|.+.+.++.+.++.||+.||+|..|+.+|..+ .|+.+++.+||..||.+++++
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSEEETTEEECHHHHHHHCCC
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeEeECCeEeCHHHHHHHhhc
Confidence 56789999999998778788999999999999999999999644 589999999999999988763
No 62
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-17 Score=93.20 Aligned_cols=66 Identities=26% Similarity=0.566 Sum_probs=59.1
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
.+|+.+|+.|+++|.+++.++.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.++++.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~~~~C~~c~~~~~~~ 77 (82)
T 2ehe_A 12 NTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA-DEPFTCQDSELLCNDCYCSAFSS 77 (82)
T ss_dssp CCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS-SCCEEEETTEEEETTTSSCCGGG
T ss_pred cccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC-CCccEeeCCEEECHHHHhhhcCC
Confidence 3688999999999997677889999999999999999999995 66799999999999999887763
No 63
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=5.4e-17 Score=91.25 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 93 KRPRTILTTQQRRAFKASF---EISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
++.|+.|+..|+..|+..| ..++||+..+++.||..+||++.+|+|||||
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqN 54 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999 9999999999999999999999999999998
No 64
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=92.05 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEI---SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+..|+..|+..|.. ++||+..+++.||..+||++.||+|||||
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqN 60 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFIN 60 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhh
Confidence 3456678999999999999999877 69999999999999999999999999999
No 65
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2e-16 Score=88.00 Aligned_cols=63 Identities=27% Similarity=0.643 Sum_probs=56.6
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.+++.+|..|+++|.. + .+.+.++.||+.||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 2 s~~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 2 SSGSSGCVKCNKAITS-G-GITYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCCSSSCCCCCT-T-CEEETTEEECTTTTBCTTTCCBCT-TSCEEECSSCEEEHHHHHHHHT
T ss_pred CCCcCCCcccCCEeCc-c-eEEECccccccCcCEECCCCCCCC-CCccEeECCEEECHHHhHHHhc
Confidence 3678999999999984 4 578999999999999999999995 6779999999999999999886
No 66
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=89.56 Aligned_cols=61 Identities=30% Similarity=0.625 Sum_probs=54.8
Q ss_pred CCCccccccCccccC---CcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHH
Q psy15437 2 LYVKKCLGCSEKLGP---DELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEK 63 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~---~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~ 63 (143)
+|+.+|+.|+++|.+ +..++.+.++.||+.||+|..|+.+|. +..|+.+++.+||..||.+
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLA-NKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCT-TSCCCEETTEECCHHHHHH
T ss_pred hhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCC-CCccEeECCEEEChHHhcc
Confidence 678999999999996 446789999999999999999999995 6679999999999999864
No 67
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=7e-17 Score=95.22 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------CCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTG---------------LSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------l~~~~vkvWFQn 142 (143)
..+.++.|+.|+..|+..|+..|+.++||+..+++.||..++ |++.+|+|||||
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqN 72 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFAN 72 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999 999999999998
No 68
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.2e-16 Score=95.39 Aligned_cols=75 Identities=24% Similarity=0.487 Sum_probs=66.2
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH-HhhccCCCCC
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE-MLQGYAQGIP 76 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~ 76 (143)
.+++.+|..|+++|..++.++.++++.||+.||+|..|+.+| .+..|+.+++.+||..||.++++ ++..|..+|.
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT-TSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred CCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCC-CcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 367899999999998656688999999999999999999999 46779999999999999988875 6778888776
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=93.82 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHh---------------------CCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDT---------------------GLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~---------------------~l~~~~vkvWFQn 142 (143)
...+.+|.|+.++..|+..|+..|+.++||+..+|++||..+ .|++.+|+|||||
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqN 77 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 77 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecc
Confidence 345678899999999999999999999999999999999999 7999999999998
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=4.2e-17 Score=88.14 Aligned_cols=44 Identities=27% Similarity=0.114 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 99 LTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 99 ~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+.+|+..|+..|..++||+..++++||..|||++++|++||||
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhccc
Confidence 47899999999999999999999999999999999999999998
No 71
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.7e-16 Score=91.79 Aligned_cols=45 Identities=24% Similarity=0.141 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++.+|+..|+..|+.++||+...++.||..|||++++|+|||||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqN 61 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTE 61 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccc
Confidence 789999999999999999999999999999999999999999998
No 72
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=86.32 Aligned_cols=60 Identities=25% Similarity=0.649 Sum_probs=52.7
Q ss_pred CCccccccCccccCCcceEEecCcccc--cCCcccccCCccccCCCceEeeCCeeec-hhhHHH
Q psy15437 3 YVKKCLGCSEKLGPDELVMKTLDNVFH--VQCFVCVVCGSRLQRGEQFVIKQGQLFC-RPDYEK 63 (143)
Q Consensus 3 ~~~~C~~C~~~i~~~~~~~~~~~~~~h--~~cf~C~~C~~~l~~~~~~~~~~~~~~C-~~~~~~ 63 (143)
|+.+|..|+++|.+++..+.++++.|| ++||+|..|+.+| .+..|+.+++.+|| ..||.+
T Consensus 1 fa~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp -CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC-TTSCCEEETTEEESSHHHHHT
T ss_pred CcCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC-CCCceEEECCEEecCHHHhhh
Confidence 678999999999975557899999999 9999999999999 47779999999999 777754
No 73
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.7e-16 Score=90.19 Aligned_cols=64 Identities=22% Similarity=0.548 Sum_probs=56.7
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEe-eCCeeechhhHHHHHH
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKEVE 66 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~~~ 66 (143)
.+|+.+|..|+++|. +.++.++++.||++||+|..|+.+|..|..|.+ +++.+||..||.++++
T Consensus 12 ~~~~~~C~~C~~~I~--~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 12 GKFGEFCHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CCSSCBCTTTCCBCC--SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred hhcCCcCccCCCCcC--ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 368899999999999 346889999999999999999999976777874 8999999999999886
No 74
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.4e-16 Score=87.91 Aligned_cols=62 Identities=19% Similarity=0.525 Sum_probs=55.8
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+++.+|..|+++|.. + .+.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 3 ~~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 3 SGSSGCVQCKKPITT-G-GVTYREQPWHKECFVCTACRKQLS-GQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp CCCCBCSSSCCBCCS-S-EEESSSSEEETTTSBCSSSCCBCT-TSCCEESSSSEECHHHHHHHTC
T ss_pred CCCCCCcccCCeecc-c-eEEECccccCCCCCccCCCCCcCC-cCceEeeCCeEECHHHHHHHhc
Confidence 678999999999984 4 588999999999999999999994 6678999999999999998875
No 75
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=5.1e-16 Score=86.60 Aligned_cols=62 Identities=31% Similarity=0.618 Sum_probs=55.0
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.++.+|..|+++|. ++ ++.+.++.||++||+|..|+.+|.. ..|+.+++.+||..||.++++
T Consensus 3 ~~~~~C~~C~~~I~-~~-~~~a~~~~~H~~CF~C~~C~~~L~~-~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GR-VIKAMNNSWHPECFRCDLCQEVLAD-IGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp CCSSBCSSSCCBCC-SC-CEEETTEEECTTTSBCSSSCCBCSS-SCCEEETTEEECHHHHHHHHC
T ss_pred CCCCcCccCCCEec-ce-EEEECcccccccCCEeCCCCCcCCC-CccEeECCeEECHHHhhhhcC
Confidence 46789999999998 33 6899999999999999999999964 468889999999999999886
No 76
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=7.8e-17 Score=95.14 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHH------------------hC---CCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARD------------------TG---LSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~------------------~~---l~~~~vkvWFQn 142 (143)
..++.++.|+.|+..|+..|+..|+.++||+...+++||.. || |++.+|+|||||
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqN 80 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFAN 80 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHH
Confidence 34567789999999999999999999999999999999999 88 999999999998
No 77
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.9e-16 Score=97.55 Aligned_cols=78 Identities=24% Similarity=0.468 Sum_probs=67.4
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCcccc-CCCceEeeCCeeechhhHHHHHH---HhhccCCCCCC
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQ-RGEQFVIKQGQLFCRPDYEKEVE---MLQGYAQGIPF 77 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~~~~~~~---~~~~~~~~~~~ 77 (143)
+++.+|..|+++|...+ ++.++++.||+.||+|..|+.+|. .+..|+.+++.+||..||.++++ +|..|..+|..
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF-LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp SCCCCBSSSSSCCCSSC-CEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCCCCcccCCEeCCcE-EEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 57889999999998543 578999999999999999999995 24679999999999999999997 48899998886
Q ss_pred ccc
Q psy15437 78 DLI 80 (143)
Q Consensus 78 ~~~ 80 (143)
+.+
T Consensus 82 ~~~ 84 (122)
T 1m3v_A 82 GDV 84 (122)
T ss_dssp EES
T ss_pred hhe
Confidence 444
No 78
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.62 E-value=1.3e-16 Score=86.35 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 96 RTILTTQQRRAFKASFEI---SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
|+.|+..|+..|+..|.. ++||+..+++.||..+||++.+|++||||
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 678999999999999999 99999999999999999999999999998
No 79
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.62 E-value=1e-16 Score=103.01 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+..+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 151 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSN 151 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHH
Confidence 3456778999999999999999999999999999999999999999999999998
No 80
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=1.3e-16 Score=101.02 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 87 DGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 87 ~~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+...+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 137 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCN 137 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHh
Confidence 34456677899999999999999999999999999999999999999999999998
No 81
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.62 E-value=3.1e-16 Score=89.93 Aligned_cols=70 Identities=29% Similarity=0.604 Sum_probs=54.1
Q ss_pred CCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH-HhhccCCC
Q psy15437 3 YVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE-MLQGYAQG 74 (143)
Q Consensus 3 ~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~ 74 (143)
++.+|..|+++|...+ .+.+.++.||++||+|..|+.+|. +..|+.+++.+||..||.++++ ++.+++++
T Consensus 6 ~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g 76 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNLD-STTVAIHDAEVYCKSCYGKKYGPKGYGYGQG 76 (81)
T ss_dssp --CBCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEEC-SSCCEEETTEEECSHHHHHHCC---------
T ss_pred CCCcCcCcCccccCce-eEEeCCcccccccCccCCCCCCCC-CCCeEeeCCEEECHHHHHHHhCCcccccCCc
Confidence 4679999999998666 578999999999999999999995 4568999999999999998885 45555544
No 82
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=85.89 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.+|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqN 53 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEK 53 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhc
Confidence 446899999999999999999999999999999999999999998
No 83
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=6e-16 Score=87.67 Aligned_cols=63 Identities=24% Similarity=0.480 Sum_probs=55.9
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeech-hhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCR-PDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~-~~~~~~~~ 66 (143)
.++.+|..|+++|...+ .+.++++.||+.||+|..|+.+|. +..|+.+++.+||. .||.++++
T Consensus 7 ~~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~ 70 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAE-KVSSLGKDWHKFCLKCERCSKTLT-PGGHAEHDGKPFCHKPCYATLFG 70 (76)
T ss_dssp CCCCBCTTTCCBCCTTT-EEEETTEEEETTTCBCSSSCCBCC-TTSCEEETTEEECTTTHHHHHSC
T ss_pred CCCCCCcCCCCEeECCe-EEEECCeEeeCCCCCCCCCCCccC-CCceEeECCEEecchHHHHHhcc
Confidence 46789999999999666 467999999999999999999995 56799999999999 79998875
No 84
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=96.27 Aligned_cols=74 Identities=28% Similarity=0.558 Sum_probs=64.9
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH-HhhccCCCCCC
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE-MLQGYAQGIPF 77 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~ 77 (143)
+|+.+|..|+++|...+ ++.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.++++ +|..|..+|..
T Consensus 1 ~~~~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSNE-YTQAENQNWHLKHFCCFDCDSILA-GEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDP 75 (126)
T ss_dssp -CCCBBTTTSSBCCSSC-EEEETTEEECGGGSBCTTTCCBCT-TSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCT
T ss_pred CcCCCCccCCCEeCCce-EEeeCCCCccCCCCCcCCCCCCCC-cCEEEeECCEEechHHhCcCcCccCcccCCcCCc
Confidence 47899999999998544 688999999999999999999994 6779999999999999998875 68888888874
No 85
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.61 E-value=2e-16 Score=91.87 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=47.8
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 93 KRPRTILTTQQRRAFKASF---EISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f---~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
++.|+.|+..|+..|+..| ..++||+..+++.||..+||++.+|+|||||
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqN 54 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGN 54 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999 9999999999999999999999999999998
No 86
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=6.1e-17 Score=90.49 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 95 PRTILTTQQRRAFKASF-EISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 95 ~R~~~~~~q~~~L~~~f-~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.|..++.+|+..|+..| +.++||+...++.||..+||++++|+|||||
T Consensus 11 ~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqN 59 (72)
T 2cqx_A 11 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRH 59 (72)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhh
Confidence 45566778899999999 9999999999999999999999999999998
No 87
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=2.5e-16 Score=91.43 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEI---SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+++.|+.|+..|+..|+..|.. ++||+..+++.||..+||++.+|++||||
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqN 80 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 80 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345556899999999999999999 99999999999999999999999999998
No 88
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-16 Score=96.49 Aligned_cols=63 Identities=30% Similarity=0.731 Sum_probs=55.3
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCcccc-CCCceEeeCCeeechhhHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQ-RGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~-~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
.++.+|..|+++|.. ..++.++++.||+.||+|..|+.+|. .|..|+.+++.+||..||.++|
T Consensus 59 ~~~~~C~~C~~~I~~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 59 LSWKRCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp SSCSBBSSSSSBCCS-SSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred ccCCcCcCCCCCcCC-cEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 456799999999984 44688999999999999999999995 3677999999999999998875
No 89
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.5e-16 Score=90.16 Aligned_cols=47 Identities=26% Similarity=0.135 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+..++.+|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqN 63 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSE 63 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHh
Confidence 34489999999999999999999999999999999999999999998
No 90
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.5e-16 Score=88.09 Aligned_cols=62 Identities=24% Similarity=0.596 Sum_probs=56.1
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+|+.+|..|+++|.+ + .+.+.++.||++||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 13 ~~~~~C~~C~~~I~~-~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~cy~~~f~ 74 (80)
T 2cuq_A 13 KFAPRCARCSKTLTQ-G-GVTYRDQPWHRECLVCTGCQTPLA-GQQFTSRDEDPYCVACFGELFA 74 (80)
T ss_dssp CSSCCCTTTCCCCCS-C-CEESSSSEECTTTCBCSSSCCBCT-TCCEEECSSSEEEHHHHHHHTT
T ss_pred ccCCcCCCCCCEecC-c-EEEECCchhhhhhCCcccCCCcCC-CCeeEeECCEEECHHHHHHHcC
Confidence 578999999999984 4 688999999999999999999994 6679999999999999998876
No 91
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.5e-16 Score=90.30 Aligned_cols=62 Identities=24% Similarity=0.498 Sum_probs=55.2
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
.++.+|..|+++|. ++ ++.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.++|+
T Consensus 23 ~~~~~C~~C~~~I~-~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GP-FLVALGKSWHPEEFNCAHCKNTMA-YIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp TCCCBBSSSCCBCC-SC-EEEETTEEECTTTCBCSSSCCBCS-SSCBEESSSCEECHHHHHHHTS
T ss_pred CCCCCCccCCCEec-ce-EEEECCccccccCCccCCCCCCCC-CCEeEeECCEEECHHHHHHHcC
Confidence 46789999999997 33 678999999999999999999995 5668899999999999998886
No 92
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.61 E-value=3.7e-16 Score=99.54 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 143 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSN 143 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHH
Confidence 456677899999999999999999999999999999999999999999999998
No 93
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=8.7e-16 Score=87.84 Aligned_cols=62 Identities=27% Similarity=0.668 Sum_probs=55.7
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+|+.+|+.|+++|.+ + .+.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 13 ~~~~~C~~C~~~I~~-~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 13 MFSPKCGGCNRPVLE-N-YLSAMDTVWHPECFVCGDCFTSFS-TGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CCSCBCTTTCCBCCS-S-CEEETTEEECTTTCBCSSSCCBSC-SSCCEESSSCEECHHHHHHHHS
T ss_pred hcCCccccCCCeecc-e-eEEECCCeEecCcCChhhCCCCCC-CCcEEeECCEEECHHHHHHHcC
Confidence 578999999999984 3 578999999999999999999996 4468999999999999999886
No 94
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-16 Score=86.79 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
-..++..|+..|+..|..++||+...++.||..+||++++|+|||||
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqN 54 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQN 54 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchh
Confidence 45789999999999999999999999999999999999999999998
No 95
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.60 E-value=4.6e-16 Score=99.38 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 90 ~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+++|.|+.++..|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqN 146 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSN 146 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccc
Confidence 56778899999999999999999999999999999999999999999999998
No 96
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.59 E-value=4.1e-16 Score=89.67 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 94 RPRTILTTQQRRAFKASFEI---SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 94 r~R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.|+.|+..|+..|+..|.. ++||+..+++.||..+||++.+|+|||||
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqN 55 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAA 55 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHH
Confidence 35666999999999999999 99999999999999999999999999998
No 97
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.59 E-value=2.6e-16 Score=101.30 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 89 ~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..+.++.|+.|+..|+..|+..|..++||+..+++.||..+||++++|+|||||
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqN 149 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCN 149 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHH
Confidence 456677999999999999999999999999999999999999999999999998
No 98
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=8.5e-16 Score=87.65 Aligned_cols=62 Identities=23% Similarity=0.464 Sum_probs=53.5
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
++..+|..|+++|. ++ ++.++++.||+.||+|..|+.+|. +.. +.+++.+||..||.+++++
T Consensus 13 ~~~~~C~~C~~~I~-~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~-f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQ-PLIFKNDPYHPDHFNCANCGKELT-ADA-RELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCC-SC-CCCCSSSCCCTTTSBCSSSCCBCC-TTC-EEETTEEECHHHHHTTSCC
T ss_pred cCCCCCccCCCEec-ce-EEEECcceeCCCCCEeCCCCCccC-CCC-EeECCEEeCHHHHHHhCCC
Confidence 46789999999999 44 578999999999999999999996 444 4889999999999987753
No 99
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.59 E-value=3.7e-16 Score=100.89 Aligned_cols=55 Identities=25% Similarity=0.481 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...+.++.|+.|+..|+..|+..|+.++||+...++.||..+||++.+|+|||||
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqN 147 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMN 147 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChh
Confidence 3456678999999999999999999999999999999999999999999999998
No 100
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.1e-15 Score=89.48 Aligned_cols=69 Identities=23% Similarity=0.678 Sum_probs=58.2
Q ss_pred CCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHHhhccCC
Q psy15437 3 YVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEMLQGYAQ 73 (143)
Q Consensus 3 ~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 73 (143)
++.+|..|+++|...+. +.++++.||+.||+|..|+.+|.. ..|+.+++.+||..||.++++....+..
T Consensus 14 ~~~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~~-~~~~~~~g~~yC~~~y~~~f~~kc~~~~ 82 (91)
T 2d8y_A 14 ARETCVECQKTVYPMER-LLANQQVFHISCFRCSYCNNKLSL-GTYASLHGRIYCKPHFNQLFKSKGNYDE 82 (91)
T ss_dssp SSCBCTTTCCBCCTTSE-EECSSSEEETTTCBCTTTCCBCCT-TTCCCSSSCCCCHHHHHHHSCCCSCCCS
T ss_pred CCCcCccCCCccCCcee-EEECCCEECCCCCeeCCCCCCCCC-CCcEeECCEEECHHHHHHHhCCCcCccC
Confidence 46799999999986664 689999999999999999999964 4588999999999999998875444433
No 101
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=2.2e-15 Score=86.05 Aligned_cols=60 Identities=32% Similarity=0.821 Sum_probs=53.7
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
..+|..|+++|...+ .+.++++.||+.||+|..|+.+|. + .|+.+++.+||..||.++|+
T Consensus 15 ~~~C~~C~~~I~~~~-~v~a~~~~wH~~CF~C~~C~~~L~-~-~~~~~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ-SLLALDKQWHVSCFKCQTCSVILT-G-EYISKDGVPYCESDYHAQFG 74 (80)
T ss_dssp CSCCTTTCCCCSSSC-CEEETTEEECTTTCBCSSSCCBCS-S-CCEEETTEEECTTHHHHHTT
T ss_pred CCCCcCcCCeeCCCe-EEEECCcccccccCCcCcCCCCcC-C-CeEEECCEEECHHHHHHHcC
Confidence 468999999998656 478999999999999999999995 5 58999999999999999886
No 102
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.7e-16 Score=84.81 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 101 TQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 101 ~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.+|+..|+..|+++++|+..+++.||..+||++++|||||||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqN 55 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQ 55 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 467999999999999999999999999999999999999998
No 103
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=2.5e-16 Score=85.25 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=38.8
Q ss_pred HHHHHHHHhh-hcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 102 QQRRAFKASF-EISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 102 ~q~~~L~~~f-~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.++..||..| ..++||+...++.||.+|||+++||||||||
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4789999999 6799999999999999999999999999998
No 104
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.8e-15 Score=85.67 Aligned_cols=66 Identities=24% Similarity=0.515 Sum_probs=55.7
Q ss_pred ccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeech-hhHHHHHH-HhhccC
Q psy15437 5 KKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCR-PDYEKEVE-MLQGYA 72 (143)
Q Consensus 5 ~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ 72 (143)
++|..|+++|..++ .+.++++.||+.||+|..|+.+|. +..|+.+++.+||. .||.++++ ++.+|+
T Consensus 1 p~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~ 68 (76)
T 1iml_A 1 PKCPKCDKEVYFAE-RVTSLGKDWHRPCLKCEKCGKTLT-SGGHAEHEGKPYCNHPCYSAMFGPKGFGRG 68 (76)
T ss_dssp CBCTTTSSBCCGGG-EEEETTEEEETTTCBCTTTCCBCC-TTTEEEETTEEEETTTHHHHHSSCCCSSCC
T ss_pred CcCCCCCCEEECce-EEEECCccccCCCCCccccCccCC-CCceECcCCeEeeCHHHHHHHhCccCCCcC
Confidence 47999999998656 478999999999999999999996 44699999999999 69998886 344444
No 105
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3e-15 Score=87.25 Aligned_cols=61 Identities=25% Similarity=0.573 Sum_probs=53.8
Q ss_pred CCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 3 YVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 3 ~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
...+|..|++.|.. .++.++++.||++||+|..|+.+|. +..|+.+++.+||..||.++|+
T Consensus 24 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 24 RMPLCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNLK-QKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp SCCBCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCTT-TSCCEEETTEEECHHHHHHHSS
T ss_pred cCCCcccCCCEecc--cEEEECCceECccCCEecCCCCCCC-CCCeEeECCEEECHHHHHHHhC
Confidence 45689999999994 3688999999999999999999995 4568889999999999998875
No 106
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3e-15 Score=85.77 Aligned_cols=62 Identities=29% Similarity=0.768 Sum_probs=54.5
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEee-CCeeechhhHHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIK-QGQLFCRPDYEKEVE 66 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~-~~~~~C~~~~~~~~~ 66 (143)
+++.+|..|+++|. + .++.++++.||+.||+|..|+.+|. +..|+.. ++.+||..||.++++
T Consensus 13 ~~~~~C~~C~~~I~-~-~~~~a~~~~~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-D-RILRAMGKAYHPGCFTCVVCHRGLD-GIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp SSCCBCTTTCCBCC-S-CCEEETTEEECTTTCBCSSSCCBCT-TSCEECCTTCCCEEHHHHHHHTT
T ss_pred cCCCccccCCCeec-c-eeEEECCccccHHhcCcccCCCccC-CCeeEECCCCEEECHHHHHHHhc
Confidence 36789999999998 3 4789999999999999999999995 6667776 689999999998886
No 107
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=1.2e-15 Score=86.98 Aligned_cols=61 Identities=23% Similarity=0.536 Sum_probs=54.2
Q ss_pred CCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 3 YVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 3 ~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
...+|..|+++|.. + ++.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.++++
T Consensus 14 ~~~~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V-FVKLRDRHRHPECYVCTDCGTNLK-QKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCCSSSCCCCCS-S-CEECSSCEECTTTTSCSSSCCCHH-HHCCEESSSCEECHHHHHHHHS
T ss_pred CCCccccCCCCccC-c-EEEECcceeCcCcCeeCCCCCCCC-CCCeEeECCEEECHHHHHHHhC
Confidence 35799999999984 3 689999999999999999999995 5568899999999999998886
No 108
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=5.4e-15 Score=89.98 Aligned_cols=64 Identities=31% Similarity=0.738 Sum_probs=56.3
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccC-CCceEeeCCeeechhhHHHHHHHh
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQR-GEQFVIKQGQLFCRPDYEKEVEML 68 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~~~~~~~~~ 68 (143)
..+|+.|+++|.. ..++.++++.||+.||+|..|+.+|.. |..|+.+++.+||..||.++|++.
T Consensus 3 ~~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCS-SEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred CCCCcCCCCeeCC-cEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 4689999999983 346889999999999999999999963 567999999999999999999854
No 109
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.54 E-value=3.3e-15 Score=98.47 Aligned_cols=75 Identities=31% Similarity=0.686 Sum_probs=65.5
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccC-CCceEeeCCeeechhhHHHHHHH---hhccCCCCCC
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQR-GEQFVIKQGQLFCRPDYEKEVEM---LQGYAQGIPF 77 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~~~~~~~~---~~~~~~~~~~ 77 (143)
++..+|..|+++|. +..++.++++.||+.||+|..|+.+|.. |..|+.+++.+||..||.++++. |..|..+|..
T Consensus 3 l~~~~C~~C~~~I~-~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 3 LSWKRCAGCGGKIA-DRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp -CCCBBTTTCCBCC-CSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred CCCCcCccCCCEeC-CceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 57789999999998 3446789999999999999999999964 56799999999999999999985 8889888763
No 110
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.54 E-value=7.4e-15 Score=91.48 Aligned_cols=66 Identities=23% Similarity=0.708 Sum_probs=59.5
Q ss_pred CCCc--cccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 2 LYVK--KCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 2 ~~~~--~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
+|+. +|..|+++|.+.+.++.+.++.||+.||.|..|+.+|..|..|+..++.+||..||.++++.
T Consensus 62 ~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp HHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred hCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 3566 89999999997777889999999999999999999997688899999999999999988863
No 111
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.53 E-value=1e-14 Score=90.88 Aligned_cols=73 Identities=29% Similarity=0.698 Sum_probs=63.5
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccC-CCceEeeCCeeechhhHHHHHH---HhhccCCCCCC
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQR-GEQFVIKQGQLFCRPDYEKEVE---MLQGYAQGIPF 77 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~~~~~~~---~~~~~~~~~~~ 77 (143)
..+|+.|+++|.. ..++.++++.||+.||+|..|+.+|.. +..|+.+++.+||..||.++++ +|..|..+|..
T Consensus 2 ~~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 2 LLTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CCBBTTTCCBCCS-SEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCCEeCC-cEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 4689999999984 336789999999999999999999963 5679999999999999999997 58888888764
No 112
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=2.5e-14 Score=81.91 Aligned_cols=62 Identities=26% Similarity=0.650 Sum_probs=52.6
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
+|+.+|..|+++|. ++ ++.+.++.||++||+|..|+++|..+..+...++.+||..|+...+
T Consensus 13 ~~~~~C~~C~~~I~-~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 13 LYGTRCFSCDQFIE-GE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp SCCCBCTTTCCBCC-SC-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred HhCCcCccccCEec-cc-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 68899999999998 33 6899999999999999999999976665666666789999986543
No 113
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=2.8e-15 Score=86.07 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=50.9
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceE--eeCCeeechhhHHHHHH
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFV--IKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~--~~~~~~~C~~~~~~~~~ 66 (143)
..+|..|+++|+..+. +.++++.||..||+|..|+.+|. +..|. .+++.+||..||.++++
T Consensus 15 ~~~C~~C~~~I~~~e~-v~a~~~~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 15 GDLCALCGEHLYVLER-LCVNGHFFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SCBCSSSCCBCCTTTB-CCBTTBCCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCcccCCCcccceE-EEECCCeeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhhhc
Confidence 4689999999986665 56999999999999999999996 44465 46899999999977553
No 114
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.3e-14 Score=79.91 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 98 ILTTQQRRAFKASFE---ISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~---~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
.|+.+++..|+..|. .++||+..+++.||..+||++.+|++||||
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqN 51 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFIN 51 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHH
Confidence 689999999999999 999999999999999999999999999998
No 115
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.46 E-value=1.6e-14 Score=95.22 Aligned_cols=66 Identities=35% Similarity=0.802 Sum_probs=58.2
Q ss_pred CCCc--cccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 2 LYVK--KCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 2 ~~~~--~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
+|+. +|..|+++|...+.++.+.++.||+.||+|..|+.+|..|..|+..++.+||..||.+++..
T Consensus 65 ~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 65 LFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp HHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred ccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence 3566 79999999997777889999999999999999999997678899999999999999877653
No 116
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=87.16 Aligned_cols=62 Identities=26% Similarity=0.662 Sum_probs=56.3
Q ss_pred CCCccccccCccccCCcceEEecCcccc--cCCcccccCCccccCCCceEeeCCeeechhhHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFH--VQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKE 64 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h--~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~ 64 (143)
+|+++|..|+++|.+++.++.+.++.|| ++||.|..|+++|. +..|+.+++.+||..++.+.
T Consensus 61 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~-~~~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 61 NHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp HSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCT-TSEEEEETTEEESSHHHHHS
T ss_pred CcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccC-CCeeEeECCEEcchHHhhhh
Confidence 5789999999999977778999999999 99999999999995 88899999999999888764
No 117
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.44 E-value=1.2e-13 Score=89.55 Aligned_cols=71 Identities=24% Similarity=0.592 Sum_probs=60.4
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH-HhhccCCCCCC
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE-MLQGYAQGIPF 77 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~ 77 (143)
..+|..|+++|.. ..++.++++.||+.||+|..|+.+|. +.. +.+++.+||..||.++++ +|..|..+|..
T Consensus 6 ~~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 6 IPMCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPLA-ERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPP 77 (169)
T ss_dssp -CBBSSSSSBCCS-SSCEECSSCEECTTTSBCTTTCCBCC-SCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCT
T ss_pred CCccccCCCccCC-cEEEEECCcEEccccCccCCCCCcCC-CCC-cccCCeeeecccccccccccccccccccCC
Confidence 5799999999984 44678999999999999999999995 443 478999999999999986 78888888874
No 118
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.43 E-value=2.1e-13 Score=89.36 Aligned_cols=71 Identities=24% Similarity=0.592 Sum_probs=60.4
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH-HhhccCCCCCC
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE-MLQGYAQGIPF 77 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~ 77 (143)
..+|..|+++|.. ..++.+.++.||+.||+|..|+.+|. +.. +.+++.+||..||.++++ +|..|..+|..
T Consensus 60 ~~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~-~~~-f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 60 IPMCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPLA-ERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPP 131 (182)
T ss_dssp CCBCBTSSSBCCC-SEEEEETTEEECSSTTSCTTTCCCCS-SCC-EEETTEEECHHHHHHTTSCCCTTTCCCCCS
T ss_pred CCcCccCCCCccC-ceeEEecCCeEccccCccCCCCCccC-CCc-eeECCEeeecCccccccccccccCCCccCC
Confidence 4699999999984 44678999999999999999999995 444 478999999999999885 67788887764
No 119
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.42 E-value=1.3e-14 Score=95.33 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------------CCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTG---------------------LSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~vkvWFQn 142 (143)
..++.+|.|+.|+..|+..|+..|+.++||+...|+.||..++ |++.+|+|||||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqN 186 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFAN 186 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchh
Confidence 3456678999999999999999999999999999999999999 999999999998
No 120
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.40 E-value=2.5e-13 Score=89.05 Aligned_cols=63 Identities=35% Similarity=0.883 Sum_probs=55.5
Q ss_pred CCCccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEe-eCCeeechhhHHHH
Q psy15437 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKE 64 (143)
Q Consensus 2 ~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~ 64 (143)
+|+++|..|+++|.+.+.++.+.++.||+.||+|..|+++|..|..|+. .++++||..||.++
T Consensus 117 ~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 117 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp TTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 6889999999999977777789999999999999999999976777765 57899999999764
No 121
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.40 E-value=6.8e-14 Score=92.84 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhC---------------------CCcccceecccC
Q psy15437 88 GRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTG---------------------LSVRIVQSRPIP 142 (143)
Q Consensus 88 ~~~~~~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~vkvWFQn 142 (143)
..++.+|.|+.|+..|+..|+..|+.++||+..+|++||..++ |++.+|++||||
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqN 213 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN 213 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHH
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHH
Confidence 4566788999999999999999999999999999999999987 888999999998
No 122
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.40 E-value=2.2e-13 Score=90.00 Aligned_cols=69 Identities=26% Similarity=0.615 Sum_probs=58.6
Q ss_pred ccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH-HhhccCCCC
Q psy15437 5 KKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE-MLQGYAQGI 75 (143)
Q Consensus 5 ~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~ 75 (143)
.+|..|+++|...+. +.++++.||.+||+|..|+.+|. +..|+.+++.+||..||.++++ ++.+|++++
T Consensus 116 ~~C~~C~~~I~~~~~-v~a~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEK-VIGAGKSWHKSCFRCAKCGKSLE-STTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185 (192)
T ss_dssp EECTTTSCEECSSSC-EEETTEEECTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHTCCCCCCCCCCC
T ss_pred CcCCCCCCEecCcEE-EecCCCccchhcCCccccCCCCC-CCcccccCCEEeCHHHHHHhcCCcCCCCCCcc
Confidence 469999999986665 56999999999999999999995 4569999999999999999886 566666553
No 123
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.33 E-value=1.3e-12 Score=86.31 Aligned_cols=62 Identities=26% Similarity=0.587 Sum_probs=54.9
Q ss_pred CccccccCccccCCcceEEecCcccccCCcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
+.+|..|+++|...+. +.++++.||+.||+|..|+.+|. +..|+.+++.+||..||.+++++
T Consensus 7 ~~~C~~C~~~I~~~~~-v~a~g~~wH~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAEE-VQCEGSSFHKSCFLCMVCKKNLD-STTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp CEECTTTCCEECSSCC-EEETTEEECTTTCBCTTTCCBCC-SSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCcCccCCCeecceeE-EEeCCceecCCCCcCcccCCcCC-CCeeEecCCEeeChhhhHhhcCc
Confidence 3689999999986664 67999999999999999999996 45699999999999999999874
No 124
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.27 E-value=8.3e-13 Score=75.77 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 96 RTILTTQQRRAFKASFEI---SPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~---~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
...++.++...|+..|.. ++||+..+++.||..|||++.||++||||
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~N 58 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFIN 58 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 346889999999999977 99999999999999999999999999998
No 125
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.14 E-value=9.4e-12 Score=90.72 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecccC
Q psy15437 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 94 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQn 142 (143)
+.++.++..|+..|++.|+.++||+..+|++||.++||+++||||||||
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n 415 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFIN 415 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhh
Confidence 4577899999999999999999999999999999999999999999998
No 126
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.86 E-value=1.4e-09 Score=64.36 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=35.4
Q ss_pred CCCCccccccCccccCCcceEEecCcccccCCcccccCC
Q psy15437 1 MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCG 39 (143)
Q Consensus 1 ~~~~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~ 39 (143)
++|+++|..|+++|.+++.++.++++.||++||.|..|+
T Consensus 63 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 63 REDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp TCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred hhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 368899999999999777789999999999999999985
No 127
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.35 E-value=1.3e-07 Score=43.63 Aligned_cols=29 Identities=31% Similarity=0.723 Sum_probs=25.6
Q ss_pred CccccccCccccCCcceEEecCcccccCCc
Q psy15437 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQCF 33 (143)
Q Consensus 4 ~~~C~~C~~~i~~~~~~~~~~~~~~h~~cf 33 (143)
+.+|..|++.++..|. +.+.++.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek-~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEK-VNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGC-CCSSSSCCCGGGC
T ss_pred CCcCCccCCEEeccee-EEECCeEecccCC
Confidence 4689999999998886 5689999999997
No 128
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=96.60 E-value=0.00018 Score=43.67 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.8
Q ss_pred CCCceEeeCCeeechhhHHHHH
Q psy15437 44 RGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 44 ~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
.|..|+.+++.+||..|+.+.+
T Consensus 93 ~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 93 MGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp CSCTTCCTTCCCCEECTTTTTT
T ss_pred CCCccEecCCEeEccCcchhch
Confidence 6888999999999999987654
No 129
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.39 E-value=0.0009 Score=36.10 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 104 RRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 104 ~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
.+.|+..|.............|..++.|+-.+||-||
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwF 54 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWF 54 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHH
Confidence 3679999999999999999999999999999999999
No 130
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=93.30 E-value=0.026 Score=33.54 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=38.9
Q ss_pred cccccCccccC-CcceEEecCccc---------ccCCcccc-----cCCccccCCCceEeeCCeeechhhHHHH
Q psy15437 6 KCLGCSEKLGP-DELVMKTLDNVF---------HVQCFVCV-----VCGSRLQRGEQFVIKQGQLFCRPDYEKE 64 (143)
Q Consensus 6 ~C~~C~~~i~~-~~~~~~~~~~~~---------h~~cf~C~-----~C~~~l~~~~~~~~~~~~~~C~~~~~~~ 64 (143)
+|..|++++.. +.......++.| .+.|..|. .|..++..|+.|+.+++++||..|+.++
T Consensus 32 ~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~~~~~~~~~~~~~g~~f~~~~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQF 105 (114)
T ss_dssp CCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBSCSCCCSSCSSTTSSBCCCSSSCCCEEEECTTC
T ss_pred cccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCCCceeEcCCccCCCCeeEEcCCEeecchhhhcc
Confidence 68889998863 122344445544 33444442 3555655788999999999999998654
No 131
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=75.81 E-value=1 Score=22.98 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
|..++.+....+...+.... ........+|..+|+++..|..|-.
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHH
Confidence 44677777766644444332 2111255889999999999999953
No 132
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=75.18 E-value=2.8 Score=23.15 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 94 r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
+.+..++.++...+-..+... . ....+|..+|++...|.-|.
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 345677888765555555433 1 24578999999999888885
No 133
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.65 E-value=4.7 Score=22.71 Aligned_cols=9 Identities=56% Similarity=0.936 Sum_probs=5.5
Q ss_pred eechhhHHH
Q psy15437 55 LFCRPDYEK 63 (143)
Q Consensus 55 ~~C~~~~~~ 63 (143)
+.|++||.-
T Consensus 44 PvCrpCyEY 52 (93)
T 1weo_A 44 PACRPCYEY 52 (93)
T ss_dssp CCCHHHHHH
T ss_pred hhhHHHHHH
Confidence 457777753
No 134
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=71.59 E-value=1.3 Score=25.87 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=10.5
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|+..|..++
T Consensus 26 a~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 26 ASCKKCSESIPKDS 39 (106)
T ss_dssp CBCSSSCCBCCTTC
T ss_pred CcchhhCCccCCCC
Confidence 47888888887665
No 135
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=70.93 E-value=1.2 Score=26.43 Aligned_cols=30 Identities=17% Similarity=0.474 Sum_probs=19.1
Q ss_pred ccccccCccccCCcceEEec----------CcccccCCcc
Q psy15437 5 KKCLGCSEKLGPDELVMKTL----------DNVFHVQCFV 34 (143)
Q Consensus 5 ~~C~~C~~~i~~~~~~~~~~----------~~~~h~~cf~ 34 (143)
..|..|++.|..++.-+... ...+|..||.
T Consensus 21 A~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 21 SSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 47999999998766333211 2244778875
No 136
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=69.09 E-value=0.27 Score=27.83 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=6.2
Q ss_pred ceecccCC
Q psy15437 136 VQSRPIPV 143 (143)
Q Consensus 136 vkvWFQn~ 143 (143)
||||.||+
T Consensus 54 vkvwmqnl 61 (127)
T 2jpf_A 54 VKVWMQNL 61 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78888874
No 137
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.89 E-value=1.8 Score=23.89 Aligned_cols=10 Identities=40% Similarity=1.185 Sum_probs=5.3
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
+.|.-|...|
T Consensus 16 l~CtlC~erL 25 (93)
T 2cs3_A 16 LCCTICHERL 25 (93)
T ss_dssp CCCSSSCSCC
T ss_pred eEeecchhhh
Confidence 3455555555
No 138
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=65.99 E-value=5.4 Score=20.64 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=22.6
Q ss_pred cccccCCccccCCCceEeeC--CeeechhhHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQ--GQLFCRPDYEKEV 65 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~--~~~~C~~~~~~~~ 65 (143)
..|..|++.|..|...+-+. .++||..-....+
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 56888999998888766664 4788844433433
No 139
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.37 E-value=2.4 Score=22.34 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=19.2
Q ss_pred cccccCccccCCcceEEec---CcccccCCc
Q psy15437 6 KCLGCSEKLGPDELVMKTL---DNVFHVQCF 33 (143)
Q Consensus 6 ~C~~C~~~i~~~~~~~~~~---~~~~h~~cf 33 (143)
.|..|+++...++..+.-. ...||..|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhcc
Confidence 5899999987665545554 455677664
No 140
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.82 E-value=3.7 Score=19.19 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
.++..+...+...+.... ...++|..+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHh
Confidence 355666544444444332 255789999999998888754
No 141
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=62.69 E-value=2.4 Score=25.22 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.2
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|+..|..++
T Consensus 16 A~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 16 AGCKKCKEKIVKGV 29 (117)
T ss_dssp EECTTSSCEECTTC
T ss_pred ccchhhCcccCCCC
Confidence 47899999997665
No 142
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=60.17 E-value=11 Score=19.84 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=25.2
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
-|.|..|...+. +.....-|..||..|..+.+.
T Consensus 8 ~~~C~IC~~~~~--~Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 8 YFRCPISLELMK--DPVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSCTTTSCCCS--SEEEETTTEEEEHHHHHHHHT
T ss_pred cCCCCCcccccc--CCEEcCCCCeecHHHHHHHHH
Confidence 477888888774 446666899999999887764
No 143
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=60.03 E-value=2.4 Score=24.99 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=10.1
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|+..|..++
T Consensus 20 a~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 20 STCKGCMEKIEKGQ 33 (111)
T ss_dssp CBCTTTCCBCCTTC
T ss_pred ccccccCCCccCCc
Confidence 46888888887554
No 144
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=59.38 E-value=2.2 Score=25.36 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=9.8
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|.+.|..++
T Consensus 39 A~Ck~C~~kI~Kge 52 (116)
T 3od8_A 39 ASCKKCSESIPKDS 52 (116)
T ss_dssp CBCTTTCCBCCTTS
T ss_pred ccCcccCCccCCCC
Confidence 46778888876554
No 145
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=56.92 E-value=8.1 Score=22.76 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 95 PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 95 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
.|..++.++...+-..+..+.... ...+|..+|++...|.-|..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~ 47 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILK 47 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHh
Confidence 577899999877777665554443 23678999999988877753
No 146
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=53.62 E-value=5.3 Score=19.17 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=14.7
Q ss_pred CceEe-eCCeeechhhHHHHH
Q psy15437 46 EQFVI-KQGQLFCRPDYEKEV 65 (143)
Q Consensus 46 ~~~~~-~~~~~~C~~~~~~~~ 65 (143)
..|++ .+-.++|..|+.++.
T Consensus 19 CpF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 19 CPFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp CCSBCCTTTTTSCHHHHHHHH
T ss_pred CCeEEEecCccchHHHHHHHh
Confidence 44544 477899999998765
No 147
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=52.23 E-value=6.4 Score=25.72 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=23.1
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEK 63 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~ 63 (143)
..|..|+-... ...-...+|+.+|..|+..
T Consensus 173 ~~C~~CGE~~~-~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTY-EADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEE-GGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchh-hcceeeeCCcEEChhhhcc
Confidence 46999998873 4445667899999999854
No 148
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.22 E-value=23 Score=20.56 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=29.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCH-HHHHHHHHHhCCCcccc
Q psy15437 91 GPKRPRTILTTQQRRAFKASFEISPKPCR-KVREGLARDTGLSVRIV 136 (143)
Q Consensus 91 ~~~r~R~~~~~~q~~~L~~~f~~~~~p~~-~~~~~la~~~~l~~~~v 136 (143)
.+.......|++|+...+.....+ .|+. ...+.|+..+|+++..+
T Consensus 12 ~~~~~~~~aTaeQ~rLAq~i~~~~-d~d~eekVk~L~EmtG~seeeA 57 (104)
T 1wj7_A 12 TQHKQRPQATAEQIRLAQMISDHN-DADFEEKVKQLIDITGKNQDEC 57 (104)
T ss_dssp CTTCCSSSSSHHHHHHHHHHHHSC-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred CccccccccCHHHHHHHHHHhcCC-cccHHHHHHHHHHhhCCCHHHH
Confidence 344456688999998777765543 3443 34556788889987654
No 149
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=51.13 E-value=7 Score=20.69 Aligned_cols=24 Identities=13% Similarity=0.392 Sum_probs=13.0
Q ss_pred ccccccCccccCCc--ceEEecCccc
Q psy15437 5 KKCLGCSEKLGPDE--LVMKTLDNVF 28 (143)
Q Consensus 5 ~~C~~C~~~i~~~~--~~~~~~~~~~ 28 (143)
..|..|+..|+++. +++..++++|
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf 29 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATT 29 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEE
Confidence 35777777776663 3333444444
No 150
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.00 E-value=4 Score=24.92 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=11.6
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|+..|..++
T Consensus 28 A~CK~C~~kI~Kge 41 (134)
T 2cs2_A 28 STCKGCMEKIEKGQ 41 (134)
T ss_dssp CBCSSSCCBCCTTS
T ss_pred ccchhcCCcccCCC
Confidence 47999999998665
No 151
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=50.89 E-value=0.06 Score=32.58 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
.++.+.+..|...-+...+|.++.+.+|+.++ |.+-.|+-|.|
T Consensus 18 tl~eeeL~rLl~lSheik~P~IpLksel~vEi-LEkG~VRfWlQ 60 (142)
T 2jtd_A 18 SHMEEEMKRLLALSQEHKFPTVPTKSELAVEI-LEKGQVRFWMQ 60 (142)
T ss_dssp ---CCCSHHHHHCCCCCCCSSCSSSCEEEEEE-ETTTEEEEEEE
T ss_pred eeCHHHHHHHHHhhhhccCCcccchhhhhHHH-HhcCcEEEEEE
Confidence 34555667788888888899998888888777 77778999988
No 152
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=47.44 E-value=11 Score=22.82 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCcccceecc
Q psy15437 122 REGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWF 140 (143)
.+.+|..+|++..+++.|.
T Consensus 72 ~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHhCCCcccEEEEE
Confidence 5678999999999999995
No 153
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=47.31 E-value=14 Score=20.49 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=27.3
Q ss_pred CCCCCHHHHHHHHHhhhcC-CCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 96 RTILTTQQRRAFKASFEIS-PKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~-~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
|..++.++....-..+... .. ....+|..+|++...|..|.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHH
Confidence 3467777766555444322 11 35578999999999998885
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=46.67 E-value=23 Score=23.62 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.3
Q ss_pred ccCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 29 HVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 29 h~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
-+.-|.|..|...+. ++.....|..||..|..+-+.
T Consensus 205 ~~~~~~c~i~~~~~~--dPv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 205 IPDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCSTTBCTTTCSBCS--SEEECSSCCEEETTHHHHHHH
T ss_pred CCcccCCcCcCCHhc--CCeECCCCCEECHHHHHHHHH
Confidence 345688999988874 567777899999999887664
No 155
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=46.31 E-value=7.8 Score=18.24 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCcccceecccC
Q psy15437 122 REGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWFQn 142 (143)
...+|..+|++...|.-|+..
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 457899999999988888753
No 156
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.28 E-value=13 Score=19.27 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=23.1
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
-+.|..|...+. ......-|..||..|....+
T Consensus 20 ~~~C~IC~~~~~--~~~~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 20 EVICPICLDILQ--KPVTIDCGHNFCLKCITQIG 51 (73)
T ss_dssp CCBCTTTCSBCS--SEEECTTCCEEEHHHHHHHC
T ss_pred CCEeccCCcccC--CeEEcCCCChhhHHHHHHHH
Confidence 367888888774 33445678899999987755
No 157
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.87 E-value=14 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.615 Sum_probs=9.2
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|+..|+++.
T Consensus 5 ~~C~Fcg~~IyPG~ 18 (66)
T 3j21_V 5 NVCSYCGKPFEPGT 18 (66)
T ss_dssp CBCTTTCSBCCTTC
T ss_pred eEecCcCCcccCCC
Confidence 45777777776663
No 158
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=44.62 E-value=17 Score=21.20 Aligned_cols=32 Identities=13% Similarity=0.397 Sum_probs=24.0
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+. ......-|..||..|....+.
T Consensus 53 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF--RPITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc--CcEEeeCCCcccHHHHHHHHh
Confidence 67888888774 345556789999999877664
No 159
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=44.33 E-value=13 Score=21.13 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
...++..+...|...++.- ..+++|..+++++..|+.+.+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 3468888888887755433 246889999999998887654
No 160
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.58 E-value=33 Score=17.71 Aligned_cols=36 Identities=22% Similarity=0.533 Sum_probs=23.7
Q ss_pred CcccccCCcccccCCcc-ccCCCceEee--CCeeechhhHHH
Q psy15437 25 DNVFHVQCFVCVVCGSR-LQRGEQFVIK--QGQLFCRPDYEK 63 (143)
Q Consensus 25 ~~~~h~~cf~C~~C~~~-l~~~~~~~~~--~~~~~C~~~~~~ 63 (143)
..+.|. ..|..|+.. + .|..|.-. .+..+|..||..
T Consensus 6 ~~v~H~--~~Cd~C~~~pi-~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESM-MGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SSCCSC--SCCSSSCCCSS-CSCEEEESSCSSCEECHHHHHH
T ss_pred CCceeC--CCCcCCCCcce-ecceEEecCCCCchhHHHHHhC
Confidence 345676 788888864 6 46655332 356789988865
No 161
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=42.79 E-value=14 Score=19.22 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceec
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSR 139 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvW 139 (143)
.++..+...+...|-..-.. ...-+++|..+|++...|+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~-~~s~~eIA~~l~is~~tV~~~ 50 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGR-EHTLEEVGAYFGVTRERIRQI 50 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSS-CCCHHHHHHHHTCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCC-CCCHHHHHHHHCCCHHHHHHH
Confidence 46788888888877421000 013457899999999888765
No 162
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=42.72 E-value=28 Score=17.26 Aligned_cols=33 Identities=12% Similarity=0.333 Sum_probs=19.1
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
..|+.|++.-........-.+..+|..|...-.
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~~~ 44 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCN 44 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHHHH
Confidence 368888876642222332345678888865443
No 163
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=42.61 E-value=25 Score=18.58 Aligned_cols=34 Identities=12% Similarity=0.349 Sum_probs=20.5
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
..|+.|++.-........-.+..+|..|...-..
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c~~ 52 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLCND 52 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHHHHH
Confidence 4688888866422223333456789888765443
No 164
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.37 E-value=27 Score=19.75 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=21.6
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+. ......-|..||..|....+.
T Consensus 22 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIK--EPVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCS--SCCBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhc--CeEECCCCCHHHHHHHHHHHH
Confidence 56777777663 223345688899999877664
No 165
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=42.19 E-value=17 Score=18.46 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=19.7
Q ss_pred ccccCCccccCCCceEeeCCeeec-hhhH
Q psy15437 34 VCVVCGSRLQRGEQFVIKQGQLFC-RPDY 61 (143)
Q Consensus 34 ~C~~C~~~l~~~~~~~~~~~~~~C-~~~~ 61 (143)
.|..|+..++ ...-..++|+.|| ..|.
T Consensus 9 aC~~C~c~Vs-~~eai~~dGK~YCSe~Ca 36 (55)
T 1jjd_A 9 ACEPCLCNVD-PSKAIDRNGLYYCSEACA 36 (55)
T ss_dssp SSTTCCCCBC-TTTSEESSSCEESSHHHH
T ss_pred cCCCCeeEec-hHHhhhcCCeEEehHHHH
Confidence 5778888884 4557788999999 4443
No 166
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=41.93 E-value=16 Score=21.07 Aligned_cols=28 Identities=21% Similarity=0.500 Sum_probs=18.2
Q ss_pred cccccCccccCCcceEEec---CcccccCCc
Q psy15437 6 KCLGCSEKLGPDELVMKTL---DNVFHVQCF 33 (143)
Q Consensus 6 ~C~~C~~~i~~~~~~~~~~---~~~~h~~cf 33 (143)
.|..|+++...++..+.-. ...||..|.
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV 35 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECT 35 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccC
Confidence 5899999975444334443 455788774
No 167
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=41.12 E-value=4.7 Score=19.75 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCcccceecccC
Q psy15437 122 REGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWFQn 142 (143)
..++|..+|++...|..|...
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 557899999999998887653
No 168
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=40.70 E-value=16 Score=18.54 Aligned_cols=38 Identities=29% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
.++..+...+...|.... ..+++|..+|++...|+.+.
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH
Confidence 467777788877654332 35578999999998887653
No 169
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.19 E-value=30 Score=20.92 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHH----Hh--CCCcccceec
Q psy15437 93 KRPRTILTTQQRRAFKASF-EISPKPCRKVREGLAR----DT--GLSVRIVQSR 139 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f-~~~~~p~~~~~~~la~----~~--~l~~~~vkvW 139 (143)
++.|..+|.+|...+-..+ +.++...-. .||. .. +++...|.-|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~i 56 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQI 56 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHH
Confidence 5688999999999998888 666655443 3455 66 6666666544
No 170
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=40.07 E-value=7.2 Score=26.18 Aligned_cols=12 Identities=33% Similarity=0.384 Sum_probs=7.2
Q ss_pred ccccccCccccC
Q psy15437 5 KKCLGCSEKLGP 16 (143)
Q Consensus 5 ~~C~~C~~~i~~ 16 (143)
..|..|...|..
T Consensus 181 ~~C~iC~~iv~~ 192 (238)
T 3nw0_A 181 KICNICHSLLIQ 192 (238)
T ss_dssp CBCTTTCSBCSS
T ss_pred CcCcchhhHHhC
Confidence 356666666653
No 171
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=39.97 E-value=12 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=18.4
Q ss_pred ccccccCccccCCc--ceEEecCcccc
Q psy15437 5 KKCLGCSEKLGPDE--LVMKTLDNVFH 29 (143)
Q Consensus 5 ~~C~~C~~~i~~~~--~~~~~~~~~~h 29 (143)
..|..|+..|+++. +++..++.+|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQ 30 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEE
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEE
Confidence 46999999998884 55566677764
No 172
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.88 E-value=42 Score=17.61 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=24.0
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
-+.|..|...+. ......-+..||..|....+..
T Consensus 19 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 19 EVTCPICLELLK--EPVSADCNHSFCRACITLNYES 52 (85)
T ss_dssp TTSCTTTCSCCS--SCEECTTSCCBCHHHHHHHHHH
T ss_pred CCCCcCCChhhC--cceeCCCCCHHHHHHHHHHHHh
Confidence 367888887774 2344557889999998876653
No 173
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=39.84 E-value=9.9 Score=23.83 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=16.6
Q ss_pred ccccccCccccCCc--ceEEecCccc
Q psy15437 5 KKCLGCSEKLGPDE--LVMKTLDNVF 28 (143)
Q Consensus 5 ~~C~~C~~~i~~~~--~~~~~~~~~~ 28 (143)
..|..|+..|+++. +++..++.+|
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf 31 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGF 31 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEE
T ss_pred EEecCcCCcccCCCCeEEEeeCCceE
Confidence 46888888888774 4455566665
No 174
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.31 E-value=18 Score=18.51 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceec
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSR 139 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvW 139 (143)
.++..+...+...|..+.+-. ..-+++|..+|++...|+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHH
Confidence 367778888887772211101 13457899999999887754
No 175
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=39.22 E-value=16 Score=17.90 Aligned_cols=13 Identities=15% Similarity=0.585 Sum_probs=9.7
Q ss_pred cccccCccccCCc
Q psy15437 6 KCLGCSEKLGPDE 18 (143)
Q Consensus 6 ~C~~C~~~i~~~~ 18 (143)
+|.+||.....+|
T Consensus 5 ~C~rCg~~fs~~e 17 (48)
T 4ayb_P 5 RCGKCWKTFTDEQ 17 (48)
T ss_dssp CCCCTTTTCCCCC
T ss_pred EeeccCCCccHHH
Confidence 5888888887555
No 176
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.83 E-value=17 Score=19.97 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
.++..+...|...|.... .-+++|..+|++...|+.+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l 74 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRL 74 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH
Confidence 356677777766543332 35678999999998887654
No 177
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=38.47 E-value=34 Score=17.67 Aligned_cols=36 Identities=6% Similarity=0.046 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
.++.+.+..+....... .++||..+|++...|.-|=
T Consensus 10 ~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp CCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHH
T ss_pred CCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHH
Confidence 46677666665543332 4577888888887777663
No 178
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=38.26 E-value=29 Score=16.59 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=7.5
Q ss_pred ccccccCccccCC
Q psy15437 5 KKCLGCSEKLGPD 17 (143)
Q Consensus 5 ~~C~~C~~~i~~~ 17 (143)
..|.-|...+..+
T Consensus 6 ~~C~IC~~~~~~~ 18 (55)
T 1iym_A 6 VECAVCLAELEDG 18 (55)
T ss_dssp CCCTTTCCCCCTT
T ss_pred CcCccCCccccCC
Confidence 4566666666533
No 179
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=38.12 E-value=8.1 Score=18.40 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=8.6
Q ss_pred cccccCccccC
Q psy15437 6 KCLGCSEKLGP 16 (143)
Q Consensus 6 ~C~~C~~~i~~ 16 (143)
.|..|+++|..
T Consensus 19 vC~~CgkPi~l 29 (44)
T 2lo3_A 19 VCEKCGKPLAL 29 (44)
T ss_dssp ECTTTCCEEET
T ss_pred hhcccCCcchH
Confidence 58888888863
No 180
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.03 E-value=12 Score=20.84 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 95 PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 95 ~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
....++..+...|....+.. ..+++|..++++...|+...
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~ 65 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSL 65 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 45568999998887766333 35678999999998887644
No 181
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=38.00 E-value=62 Score=19.54 Aligned_cols=40 Identities=13% Similarity=-0.070 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 97 TILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 97 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
..++.++...+...+.... ....+|..+|++...|.-|..
T Consensus 24 ~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 3577777666665555432 245789999999999999975
No 182
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=37.19 E-value=28 Score=21.48 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=28.9
Q ss_pred CcccccCCccccCCCceEe-eCCeeechhhHHHHHHH----hhccCCCC
Q psy15437 32 CFVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKEVEM----LQGYAQGI 75 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~~~~----~~~~~~~~ 75 (143)
-+.|..|...+. ..... .-|..||..|....+.. |+.|...+
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 357888888774 33444 67899999999887754 55555444
No 183
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=36.30 E-value=12 Score=23.35 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=13.8
Q ss_pred ccccccCccccCCc--ceEEecCccc
Q psy15437 5 KKCLGCSEKLGPDE--LVMKTLDNVF 28 (143)
Q Consensus 5 ~~C~~C~~~i~~~~--~~~~~~~~~~ 28 (143)
..|..|+..|+++. +++..++.+|
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr~Dgkvf 29 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVRGDSKIF 29 (155)
T ss_dssp EECTTTCSEECTTCCEEEECTTCCEE
T ss_pred eEecCcCCcccCCCCeEEEecCCCEE
Confidence 35777777777664 3334444444
No 184
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.09 E-value=22 Score=17.99 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=23.0
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
-+.|..|...+. ......-|..||..|..+.+
T Consensus 15 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 15 KYKCEKCHLVLC--SPKQTECGHRFCESCMAALL 46 (66)
T ss_dssp CEECTTTCCEES--SCCCCSSSCCCCHHHHHHHH
T ss_pred CCCCCCCChHhc--CeeECCCCCHHHHHHHHHHH
Confidence 367888887774 22335678899999988766
No 185
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=36.00 E-value=28 Score=21.32 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=24.2
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+. ......-|..||..|....+.
T Consensus 79 ~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 79 FMCVCCQELVY--QPVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp TBCTTTSSBCS--SEEECTTSCEEEHHHHHHHHH
T ss_pred CEeecCChhhc--CCEEcCCCCchhHHHHHHHHH
Confidence 67888888774 345566789999999887765
No 186
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=35.62 E-value=7.8 Score=25.81 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=0.0
Q ss_pred ccccccCccccCCc
Q psy15437 5 KKCLGCSEKLGPDE 18 (143)
Q Consensus 5 ~~C~~C~~~i~~~~ 18 (143)
..|..|...|..++
T Consensus 144 a~Ck~C~~kI~Kge 157 (223)
T 4av1_A 144 STCKGCMEKIEKGQ 157 (223)
T ss_dssp --------------
T ss_pred ccccccCCccCCCC
Confidence 36888988887554
No 187
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=34.75 E-value=18 Score=19.31 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=7.1
Q ss_pred CCccccccCcccc
Q psy15437 3 YVKKCLGCSEKLG 15 (143)
Q Consensus 3 ~~~~C~~C~~~i~ 15 (143)
+-.+|..||+.|.
T Consensus 3 iPVRCFTCGkvi~ 15 (70)
T 1twf_J 3 VPVRCFSCGKVVG 15 (70)
T ss_dssp CCSBCTTTCCBCT
T ss_pred CCeecCCCCCChH
Confidence 3445666665554
No 188
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=34.74 E-value=26 Score=19.86 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCcccceecccC
Q psy15437 121 VREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 121 ~~~~la~~~~l~~~~vkvWFQn 142 (143)
-++.++.+.|+++.+.+-+|+.
T Consensus 47 LK~~I~~k~Gip~~qQrLif~G 68 (93)
T 3plu_A 47 FKKVLSLQIGTQPNKIVLQKGG 68 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETT
T ss_pred HHHHHHHHhCCCHHHEEEEeCC
Confidence 4667899999999998888863
No 189
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.61 E-value=11 Score=19.12 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCcccceecc
Q psy15437 122 REGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWF 140 (143)
.+.||..+|++...|.-|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999888886
No 190
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=33.57 E-value=7.2 Score=21.12 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCcccceecc
Q psy15437 122 REGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWF 140 (143)
..++|..+|++...++.|=
T Consensus 8 i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWE 26 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4568889999998888873
No 191
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.54 E-value=43 Score=16.56 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=24.6
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
-+.|..|...+. ......-|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQ--KPVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCS--SCEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhC--CeEEeCCCCcchHHHHHHHHH
Confidence 367888888774 345556789999999887765
No 192
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=32.59 E-value=44 Score=17.85 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=29.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHh-CCCccccee
Q psy15437 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDT-GLSVRIVQS 138 (143)
Q Consensus 93 ~r~R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~-~l~~~~vkv 138 (143)
...+..+|.++-..|+........-....-..+|..+ |-+..+|+.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~ 61 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIA 61 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHH
Confidence 3456679999999998877665432344556677777 344444443
No 193
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.53 E-value=25 Score=19.04 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhhhcC--CCCCHHHHHHHHHHhCCCcccceec
Q psy15437 98 ILTTQQRRAFKASFEIS--PKPCRKVREGLARDTGLSVRIVQSR 139 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~--~~p~~~~~~~la~~~~l~~~~vkvW 139 (143)
.++..+...+...|-.. .-- .-+++|..+|++...|+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~ 58 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHH
Confidence 46777788887776421 111 3557899999999888765
No 194
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=32.07 E-value=16 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=14.2
Q ss_pred ccccccCccccCCc--ceEEecCccc
Q psy15437 5 KKCLGCSEKLGPDE--LVMKTLDNVF 28 (143)
Q Consensus 5 ~~C~~C~~~i~~~~--~~~~~~~~~~ 28 (143)
..|..|+..|+++. +++..++++|
T Consensus 6 e~CsFcG~~IyPG~G~~fVr~Dgkvf 31 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIRADSQVF 31 (162)
T ss_dssp EECTTTCSEECSSCSEEEECTTSCEE
T ss_pred EEecCcCCcccCCCCeEEEecCCCEE
Confidence 45777777777664 3344444444
No 195
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.80 E-value=40 Score=18.18 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=5.3
Q ss_pred cccccCcccc
Q psy15437 6 KCLGCSEKLG 15 (143)
Q Consensus 6 ~C~~C~~~i~ 15 (143)
.|.-|.....
T Consensus 17 ~C~IC~~~~~ 26 (80)
T 2d8s_A 17 ICRICHCEGD 26 (80)
T ss_dssp CCSSSCCCCC
T ss_pred CCeEcCcccc
Confidence 4666654443
No 196
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.64 E-value=23 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=15.6
Q ss_pred cccccCccccCCcceEEecCcccccCCcccccCCcccc
Q psy15437 6 KCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQ 43 (143)
Q Consensus 6 ~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C~~C~~~l~ 43 (143)
.|..|+.... ....... +.|..|+..+.
T Consensus 29 ~Cp~CG~~~v-----~r~atGi-----W~C~~Cg~~~a 56 (83)
T 1vq8_Z 29 ACPNCGEDRV-----DRQGTGI-----WQCSYCDYKFT 56 (83)
T ss_dssp ECSSSCCEEE-----EEEETTE-----EEETTTCCEEE
T ss_pred cCCCCCCcce-----eccCCCe-----EECCCCCCEec
Confidence 5777876443 1222223 46777777763
No 197
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.46 E-value=47 Score=18.30 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=25.8
Q ss_pred cccccCCccccCCCceEe-eCCeeechhhHHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~~~~ 67 (143)
|.|..|...+. ++... ..|..||..|....+..
T Consensus 8 ~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~ 41 (94)
T 2yu4_A 8 FTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIES 41 (94)
T ss_dssp CBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHH
T ss_pred eECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHH
Confidence 78888888774 56777 48999999998877653
No 198
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.45 E-value=57 Score=16.68 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=26.6
Q ss_pred cccccCCccccCCCceEe-eCCeeechhhHHHHHH---HhhccCCCC
Q psy15437 33 FVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKEVE---MLQGYAQGI 75 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~~~---~~~~~~~~~ 75 (143)
+.|..|...+. ..... .-+..||..|....+. .|+.|...+
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 67888877774 23444 5788999999877664 344444433
No 199
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=31.36 E-value=59 Score=16.80 Aligned_cols=32 Identities=19% Similarity=0.574 Sum_probs=24.0
Q ss_pred cccccCCccccCCCceEee-CCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIK-QGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~-~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+. ...... -+..||..|....+.
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 16 LLCLICKDIMT--DAVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GSCSSSCCCCT--TCEECSSSCCEECTTHHHHHHH
T ss_pred CCCcCCChHHh--CCeEcCCCCCHHHHHHHHHHHH
Confidence 67888887774 345555 589999999987775
No 200
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.27 E-value=16 Score=19.68 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
-..++..+...|...++.. ..+++|..+|++...|+.+.
T Consensus 19 ~~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l 57 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHV 57 (82)
T ss_dssp GGGSCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 3468888888888743322 35678999999998887654
No 201
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.63 E-value=9.9 Score=21.21 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=4.6
Q ss_pred cCcccccCCc
Q psy15437 24 LDNVFHVQCF 33 (143)
Q Consensus 24 ~~~~~h~~cf 33 (143)
-+++||..|+
T Consensus 35 C~RvfH~~CL 44 (89)
T 1wil_A 35 CTRVFHDGCL 44 (89)
T ss_dssp SSSCCCHHHH
T ss_pred ccccccHhhc
Confidence 3444444444
No 202
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.55 E-value=11 Score=19.58 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCcccceeccc
Q psy15437 122 REGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWFQ 141 (143)
..++|..||++...|.-|-.
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999988887754
No 203
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.49 E-value=62 Score=16.86 Aligned_cols=34 Identities=18% Similarity=0.426 Sum_probs=23.8
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
-+.|..|...+. ......-+..||..|....+..
T Consensus 19 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 19 EVTCPICLELLT--QPLSLDCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCCTTTCSCCS--SCBCCSSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCCcccC--CceeCCCCCHHHHHHHHHHHHH
Confidence 367888887774 2344457889999998876543
No 204
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=30.20 E-value=36 Score=16.17 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=5.6
Q ss_pred CeeechhhHHHH
Q psy15437 53 GQLFCRPDYEKE 64 (143)
Q Consensus 53 ~~~~C~~~~~~~ 64 (143)
+..||..|..+.
T Consensus 28 gH~fc~~Ci~~~ 39 (55)
T 2ecm_A 28 GHLLHRTCYEEM 39 (55)
T ss_dssp SCEEETTHHHHH
T ss_pred CCcccHHHHHHH
Confidence 444555554443
No 205
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.90 E-value=21 Score=13.41 Aligned_cols=10 Identities=20% Similarity=0.856 Sum_probs=6.8
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
|.|..|++.+
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 4677777766
No 206
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.74 E-value=23 Score=18.67 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=11.7
Q ss_pred cccccCCccccCCCceEeeCCeeechhh
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPD 60 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~ 60 (143)
+.|-.|+.+|. +...++.++|..|
T Consensus 11 L~CP~ck~~L~----~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR----YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE----EETTTTEEEETTT
T ss_pred hCCCCCCCcCe----EeCCCCEEEcCCC
Confidence 45555555552 2223455555444
No 207
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=29.72 E-value=43 Score=18.13 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=26.8
Q ss_pred cCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 30 VQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 30 ~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.-|.|..|...+. +......|..||..+...-+.
T Consensus 12 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DPVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhc--CCeECCCCCEECHHHHHHHHh
Confidence 34588988888774 567666899999999877664
No 208
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.58 E-value=33 Score=17.49 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 96 R~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
-..++..+...|...++.. ...++|..+|++...|+.+..
T Consensus 9 ~~~L~~~e~~il~~~~~g~------s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 9 KPLLTKREREVFELLVQDK------TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHH
Confidence 3457888888887743222 345789999999988776543
No 209
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=29.07 E-value=49 Score=19.34 Aligned_cols=36 Identities=6% Similarity=0.046 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
.++.+.+..+....... .++||..+|++...|.-|=
T Consensus 70 ~~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E 105 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYE 105 (133)
T ss_dssp TCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHH
T ss_pred CCCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHH
Confidence 34556666655443332 4467888888887776663
No 210
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.90 E-value=24 Score=18.62 Aligned_cols=9 Identities=33% Similarity=0.641 Sum_probs=3.9
Q ss_pred cccccCccc
Q psy15437 6 KCLGCSEKL 14 (143)
Q Consensus 6 ~C~~C~~~i 14 (143)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (68)
T 2hf1_A 10 VCPLCKGPL 18 (68)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCCcC
Confidence 344444433
No 211
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.68 E-value=26 Score=18.53 Aligned_cols=9 Identities=56% Similarity=0.888 Sum_probs=3.9
Q ss_pred ccccCCccc
Q psy15437 34 VCVVCGSRL 42 (143)
Q Consensus 34 ~C~~C~~~l 42 (143)
.|-.|+.+|
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 444444443
No 212
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.47 E-value=51 Score=17.33 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=23.2
Q ss_pred cccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+. ......-+..||..|....+.
T Consensus 16 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 16 FRCFICRQAFQ--NPVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp SBCSSSCSBCC--SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCcCCCchhc--CeeEccCCCHhHHHHHHHHHH
Confidence 67888877773 334555688999999877764
No 213
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=28.19 E-value=63 Score=18.39 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=24.9
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVEM 67 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~~ 67 (143)
-+.|..|...+. ......-|..||..|....+..
T Consensus 23 ~~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 23 SISCQICEHILA--DPVETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp HTBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCCcHhc--CcEEcCCCCcccHHHHHHHHhH
Confidence 367888888774 3455567899999999877653
No 214
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=27.95 E-value=49 Score=18.64 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=26.7
Q ss_pred cCCcccccCCccccCCCceEeeCCeeechhhHHHHH
Q psy15437 30 VQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEV 65 (143)
Q Consensus 30 ~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~ 65 (143)
+.-|.|..|...+. ++.....|..||..|...-+
T Consensus 27 p~~~~CpI~~~~m~--dPV~~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--DPVRLPSGTIMDRSIILRHL 60 (100)
T ss_dssp STTTBCTTTCSBCS--SEEEETTTEEEEHHHHHHHT
T ss_pred cHhhCCcCccCccc--CCeECCCCCEEchHHHHHHH
Confidence 45689999988874 66777799999998877654
No 215
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.94 E-value=24 Score=18.78 Aligned_cols=10 Identities=60% Similarity=1.265 Sum_probs=4.5
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
+.|-.|+.+|
T Consensus 9 L~CP~ck~~L 18 (70)
T 2js4_A 9 LVCPVCKGRL 18 (70)
T ss_dssp CBCTTTCCBE
T ss_pred eECCCCCCcC
Confidence 3444444444
No 216
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.92 E-value=23 Score=13.54 Aligned_cols=11 Identities=45% Similarity=1.053 Sum_probs=7.7
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|+..+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 57777877663
No 217
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.83 E-value=20 Score=19.91 Aligned_cols=38 Identities=21% Similarity=0.088 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 97 TILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 97 ~~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
..++..+...|...++.- ..+++|..+|++...|+.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l 63 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYV 63 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 357888888887754333 24678999999998887654
No 218
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=27.79 E-value=23 Score=14.91 Aligned_cols=12 Identities=42% Similarity=1.223 Sum_probs=8.2
Q ss_pred CCcccccCCccc
Q psy15437 31 QCFVCVVCGSRL 42 (143)
Q Consensus 31 ~cf~C~~C~~~l 42 (143)
.|+.|..|...|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 467777777655
No 219
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=27.62 E-value=49 Score=20.39 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=25.1
Q ss_pred CcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
=+.|..|...+. ......-|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 18 KYECPICLMALR--EAVQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCChhhc--CcEECCCCCHHHHHHHHHHHH
Confidence 378889988874 345556789999999987764
No 220
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=33.24 E-value=13 Score=19.78 Aligned_cols=23 Identities=22% Similarity=-0.010 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCcccceecccC
Q psy15437 120 KVREGLARDTGLSVRIVQSRPIP 142 (143)
Q Consensus 120 ~~~~~la~~~~l~~~~vkvWFQn 142 (143)
..-..||.+|+-++.||+.-||-
T Consensus 37 ~tfa~iA~~Lnks~~QV~~RF~~ 59 (70)
T 2lr8_A 37 KTFAYLAAKLDKNPNQVSERFQQ 59 (70)
Confidence 45667899999999999998884
No 221
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.10 E-value=19 Score=13.72 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=7.7
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 57788877663
No 222
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=27.02 E-value=33 Score=19.90 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
.++..+...+...|...- .-+++|..+|++...|+.|..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 366777777777654442 356789999999998887653
No 223
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.85 E-value=17 Score=19.51 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=6.6
Q ss_pred ccccccCcccc
Q psy15437 5 KKCLGCSEKLG 15 (143)
Q Consensus 5 ~~C~~C~~~i~ 15 (143)
..|+.|...|.
T Consensus 16 ~~C~IC~~~i~ 26 (74)
T 2ct0_A 16 KICNICHSLLI 26 (74)
T ss_dssp CBCSSSCCBCS
T ss_pred CcCcchhhHcc
Confidence 35666666665
No 224
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=26.74 E-value=12 Score=15.15 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=7.0
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
|.|..|.++-
T Consensus 6 ffcetcskpw 15 (26)
T 1loi_A 6 FFCETCSKPW 15 (26)
T ss_dssp HHHHTSSCTT
T ss_pred HHHHhcCCch
Confidence 5677787764
No 225
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.98 E-value=22 Score=17.14 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=4.5
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
+.|..|+..+
T Consensus 25 lvC~~CG~v~ 34 (50)
T 1pft_A 25 IVCAKCGYVI 34 (50)
T ss_dssp EEESSSCCBC
T ss_pred EECcccCCcc
Confidence 3444554433
No 226
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.95 E-value=14 Score=19.71 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCcccceecc
Q psy15437 122 REGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWF 140 (143)
.+.||..+|++...|--|.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~ 31 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWL 31 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 5689999999999888884
No 227
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=25.88 E-value=52 Score=17.75 Aligned_cols=33 Identities=18% Similarity=0.527 Sum_probs=24.8
Q ss_pred CcccccCCccccCCCceEee-CCeeechhhHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVIK-QGQLFCRPDYEKEVE 66 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~~-~~~~~C~~~~~~~~~ 66 (143)
-+.|..|...+. ...... -|..||..|....+.
T Consensus 13 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 13 ELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTEETTTTEECS--SCEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCChhhc--CceECCCCCCHHHHHHHHHHHH
Confidence 378889988774 445566 599999999877664
No 228
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.47 E-value=67 Score=16.98 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=23.9
Q ss_pred cccccCCccccCCC--ceEeeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGE--QFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~--~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+..+. .....-|..||..|....+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHH
Confidence 67888887774322 34445689999999987765
No 229
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.22 E-value=27 Score=13.47 Aligned_cols=11 Identities=18% Similarity=0.857 Sum_probs=7.7
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|+..+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 57778877663
No 230
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.13 E-value=6 Score=19.77 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=14.2
Q ss_pred HHHHHHhCCCcccceecc
Q psy15437 123 EGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 123 ~~la~~~~l~~~~vkvWF 140 (143)
+++|..+|+++..|+.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~ 34 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHR 34 (61)
T ss_dssp HHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 478999999998877654
No 231
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.01 E-value=40 Score=19.10 Aligned_cols=39 Identities=13% Similarity=-0.112 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceeccc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWFQ 141 (143)
.++.+....+...+.... ....+|..+|++...|.-|..
T Consensus 17 ~~s~~~r~~i~~~~~~g~-----s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADGI-----RPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 467766666555554332 245689999999999988864
No 232
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.44 E-value=15 Score=18.23 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCcccceeccc
Q psy15437 122 REGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWFQ 141 (143)
.+.||..+|++...|.-|..
T Consensus 17 ~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999887776653
No 233
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.74 E-value=16 Score=13.75 Aligned_cols=10 Identities=50% Similarity=1.364 Sum_probs=6.0
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 4566666655
No 234
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=23.59 E-value=81 Score=20.08 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=27.7
Q ss_pred cCCcccccCCccccCCCceEeeCCeeechhhHHHHHH
Q psy15437 30 VQCFVCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 30 ~~cf~C~~C~~~l~~~~~~~~~~~~~~C~~~~~~~~~ 66 (143)
+.-|.|..|...+. +++....|..||..|...-+.
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCC--CCeECCCCCEECHHHHHHHHH
Confidence 45688999888874 667777899999999877664
No 235
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.13 E-value=16 Score=18.20 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCcccceeccc
Q psy15437 122 REGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWFQ 141 (143)
...||..+|++...|.-|..
T Consensus 21 ~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHc
Confidence 45789999999888777654
No 236
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.12 E-value=24 Score=13.42 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=7.7
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 56778877663
No 237
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.02 E-value=27 Score=18.53 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=4.3
Q ss_pred cccccCccc
Q psy15437 6 KCLGCSEKL 14 (143)
Q Consensus 6 ~C~~C~~~i 14 (143)
.|..|+.++
T Consensus 10 ~CP~ck~~L 18 (69)
T 2pk7_A 10 ACPICKGPL 18 (69)
T ss_dssp CCTTTCCCC
T ss_pred eCCCCCCcC
Confidence 455555444
No 238
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.92 E-value=8.2 Score=17.92 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=3.8
Q ss_pred cccccCCcc
Q psy15437 33 FVCVVCGSR 41 (143)
Q Consensus 33 f~C~~C~~~ 41 (143)
|.|..|++.
T Consensus 13 ~~C~~C~k~ 21 (48)
T 2epr_A 13 VACEICGKI 21 (48)
T ss_dssp EEETTTTEE
T ss_pred eeCCCCCcc
Confidence 344444443
No 239
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.90 E-value=30 Score=13.01 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=7.5
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|+..+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 56777777663
No 240
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.87 E-value=31 Score=13.12 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=7.7
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|+..+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 56777877663
No 241
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.15 E-value=25 Score=13.33 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=6.7
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
|.|..|+..+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 5677777665
No 242
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.88 E-value=34 Score=15.48 Aligned_cols=26 Identities=19% Similarity=0.545 Sum_probs=13.0
Q ss_pred cccccCccccCCcceEEecCcccccCCccc
Q psy15437 6 KCLGCSEKLGPDELVMKTLDNVFHVQCFVC 35 (143)
Q Consensus 6 ~C~~C~~~i~~~~~~~~~~~~~~h~~cf~C 35 (143)
.|..|+.+-. + +...++.+...|-.|
T Consensus 2 lC~~C~~peT--~--l~~~~~~~~l~C~aC 27 (36)
T 1k81_A 2 ICRECGKPDT--K--IIKEGRVHLLKCMAC 27 (36)
T ss_dssp CCSSSCSCEE--E--EEEETTEEEEEEETT
T ss_pred CCcCCCCCCc--E--EEEeCCcEEEEhhcC
Confidence 4777876654 2 222445554444333
No 243
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.72 E-value=18 Score=18.25 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCcccceeccc
Q psy15437 122 REGLARDTGLSVRIVQSRPI 141 (143)
Q Consensus 122 ~~~la~~~~l~~~~vkvWFQ 141 (143)
.+.||..+|++...|.-|..
T Consensus 19 q~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHc
Confidence 45789999999888777654
No 244
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=21.60 E-value=79 Score=17.70 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=23.8
Q ss_pred CcccccCCccccCCCceEe-eCCeeechhhHHHHHH
Q psy15437 32 CFVCVVCGSRLQRGEQFVI-KQGQLFCRPDYEKEVE 66 (143)
Q Consensus 32 cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~~~~~~~ 66 (143)
-+.|..|...+. ..... .-|..||..|....+.
T Consensus 15 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHH
Confidence 367888887773 34555 6789999999877664
No 245
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.58 E-value=28 Score=13.29 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=7.5
Q ss_pred cccccCCcccc
Q psy15437 33 FVCVVCGSRLQ 43 (143)
Q Consensus 33 f~C~~C~~~l~ 43 (143)
|.|..|+..+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 56777777663
No 246
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.50 E-value=48 Score=19.08 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 98 ILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 98 ~~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
.++..+...+...|...- .-+++|..+|++...|+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l 62 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNI 62 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH
Confidence 356677777776644332 35678999999998887654
No 247
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.29 E-value=24 Score=16.44 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=7.6
Q ss_pred cccccCcccc
Q psy15437 6 KCLGCSEKLG 15 (143)
Q Consensus 6 ~C~~C~~~i~ 15 (143)
.|.+|++.|.
T Consensus 11 ~C~~C~~~i~ 20 (39)
T 2i5o_A 11 PCEKCGSLVP 20 (39)
T ss_dssp ECTTTCCEEE
T ss_pred ccccccCcCC
Confidence 6888887775
No 248
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=21.06 E-value=73 Score=17.65 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=23.3
Q ss_pred cccccCCccccCCCceE-eeCCeeechhhHHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFV-IKQGQLFCRPDYEKEVE 66 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~-~~~~~~~C~~~~~~~~~ 66 (143)
+.|..|...+. .... ..-|..||..|....+.
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCcccc--CccccCCCCChhhHHHHHHHHH
Confidence 67888888774 3344 55688999999887664
No 249
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.66 E-value=28 Score=13.29 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=7.1
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
|.|..|+..+
T Consensus 4 ~~C~~C~~~f 13 (30)
T 2m0d_A 4 YQCDYCGRSF 13 (30)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCccc
Confidence 5677777765
No 250
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.65 E-value=1e+02 Score=15.87 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=23.6
Q ss_pred cccccCCccccCCCce-EeeCCeeechhhHHHHHH---HhhccCCCCC
Q psy15437 33 FVCVVCGSRLQRGEQF-VIKQGQLFCRPDYEKEVE---MLQGYAQGIP 76 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~-~~~~~~~~C~~~~~~~~~---~~~~~~~~~~ 76 (143)
+.|..|...+..+... ...-+..||..|..+.+. .|+.|...+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 4566776666433322 223567778777765543 2444444443
No 251
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.57 E-value=33 Score=17.82 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHHhCCCcccceecc
Q psy15437 99 LTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140 (143)
Q Consensus 99 ~~~~q~~~L~~~f~~~~~p~~~~~~~la~~~~l~~~~vkvWF 140 (143)
++..+...+...+..- ..+++|..+|++...|+.+.
T Consensus 17 L~~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~ 52 (79)
T 1x3u_A 17 LSERERQVLSAVVAGL------PNKSIAYDLDISPRTVEVHR 52 (79)
T ss_dssp HCHHHHHHHHHHTTTC------CHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHH
Confidence 4556666665533222 24578999999988877654
No 252
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.48 E-value=58 Score=17.49 Aligned_cols=7 Identities=57% Similarity=1.445 Sum_probs=3.2
Q ss_pred ccccCCc
Q psy15437 34 VCVVCGS 40 (143)
Q Consensus 34 ~C~~C~~ 40 (143)
.|..|+.
T Consensus 28 ~C~vC~~ 34 (77)
T 2e6s_A 28 SCRVCGG 34 (77)
T ss_dssp SCSSSCC
T ss_pred CCcCcCC
Confidence 4444443
No 253
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.46 E-value=24 Score=13.47 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=7.1
Q ss_pred cccccCCccc
Q psy15437 33 FVCVVCGSRL 42 (143)
Q Consensus 33 f~C~~C~~~l 42 (143)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5677777765
No 254
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=20.41 E-value=63 Score=18.09 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=26.4
Q ss_pred cCCcccccCCccccCCCceEeeCC-eeechhhHHHHHH
Q psy15437 30 VQCFVCVVCGSRLQRGEQFVIKQG-QLFCRPDYEKEVE 66 (143)
Q Consensus 30 ~~cf~C~~C~~~l~~~~~~~~~~~-~~~C~~~~~~~~~ 66 (143)
+.-|.|..|...+. ++.....| ..||..|..+-+.
T Consensus 20 p~~~~CpI~~~~m~--dPV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--DPVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CTTTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHTT
T ss_pred cHhcCCcCcccccc--CCeECCCCCeEECHHHHHHHHH
Confidence 45588999988774 56767777 9999998876553
No 255
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=20.38 E-value=58 Score=17.39 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=19.8
Q ss_pred cccccCCccccCCCceEe--eCCeeechhhHHHHH
Q psy15437 33 FVCVVCGSRLQRGEQFVI--KQGQLFCRPDYEKEV 65 (143)
Q Consensus 33 f~C~~C~~~l~~~~~~~~--~~~~~~C~~~~~~~~ 65 (143)
+.|..|..++...+.... .-|..+|..|+.+..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHH
Confidence 567777776642222221 257788988887654
Done!