Your job contains 1 sequence.
>psy15437
MLYVKKCLGCSEKLGPDELVMKTLDNVFHVQCFVCVVCGSRLQRGEQFVIKQGQLFCRPD
YEKEVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRK
VREGLARDTGLSVRIVQSRPIPV
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15437
(143 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036274 - symbol:CG4328 species:7227 "Drosophila m... 416 6.1e-39 1
UNIPROTKB|G3V877 - symbol:Lmx1b "LIM homeobox transcripti... 210 2.5e-30 2
ZFIN|ZDB-GENE-050114-2 - symbol:lmx1bb "LIM homeobox tran... 215 2.9e-30 2
UNIPROTKB|H9L043 - symbol:H9L043 "Uncharacterized protein... 328 1.3e-29 1
UNIPROTKB|Q8UVR3 - symbol:lmx1b.1 "LIM homeobox transcrip... 316 2.4e-28 1
ZFIN|ZDB-GENE-050114-3 - symbol:lmx1ba "LIM homeobox tran... 315 3.1e-28 1
FB|FBgn0052105 - symbol:CG32105 species:7227 "Drosophila ... 322 3.4e-28 1
UNIPROTKB|F1N4F7 - symbol:LMX1B "Uncharacterized protein"... 307 2.2e-27 1
UNIPROTKB|J9NU69 - symbol:LMX1B "Uncharacterized protein"... 307 2.2e-27 1
UNIPROTKB|B7ZLH2 - symbol:LMX1B "LMX1B protein" species:9... 307 2.2e-27 1
UNIPROTKB|F8VYP0 - symbol:LMX1B "LIM homeobox transcripti... 307 2.2e-27 1
UNIPROTKB|F8W7W6 - symbol:LMX1B "LIM homeobox transcripti... 307 2.2e-27 1
UNIPROTKB|O60663 - symbol:LMX1B "LIM homeobox transcripti... 307 2.2e-27 1
UNIPROTKB|F1RS26 - symbol:LMX1B "Uncharacterized protein"... 307 2.2e-27 1
MGI|MGI:1888519 - symbol:Lmx1a "LIM homeobox transcriptio... 307 2.2e-27 1
MGI|MGI:1100513 - symbol:Lmx1b "LIM homeobox transcriptio... 307 2.2e-27 1
RGD|1304784 - symbol:Lmx1a "LIM homeobox transcription fa... 307 2.2e-27 1
UNIPROTKB|F1PDJ1 - symbol:LMX1A "Uncharacterized protein"... 306 2.8e-27 1
UNIPROTKB|F1S229 - symbol:LMX1A "Uncharacterized protein"... 306 2.8e-27 1
UNIPROTKB|I3L863 - symbol:LMX1A "Uncharacterized protein"... 306 2.8e-27 1
UNIPROTKB|F1MC25 - symbol:LMX1A "Uncharacterized protein"... 304 4.5e-27 1
UNIPROTKB|Q8TE12 - symbol:LMX1A "LIM homeobox transcripti... 304 4.5e-27 1
ZFIN|ZDB-GENE-041014-332 - symbol:lmx1a "LIM homeobox tra... 267 3.8e-23 1
UNIPROTKB|P53413 - symbol:LMX1B "LIM/homeobox protein LMX... 217 2.1e-19 2
UNIPROTKB|F1NDZ5 - symbol:LMX1B "LIM/homeobox protein LMX... 217 3.4e-19 2
WB|WBGene00002988 - symbol:lim-6 species:6239 "Caenorhabd... 225 1.1e-18 1
UNIPROTKB|E1C2D6 - symbol:E1C2D6 "Uncharacterized protein... 207 1.1e-18 2
UNIPROTKB|H9L2C7 - symbol:LHX4 "Uncharacterized protein" ... 139 6.6e-16 2
ZFIN|ZDB-GENE-060728-1 - symbol:lhx4 "LIM homeobox 4" spe... 142 5.2e-15 2
UNIPROTKB|F1MFM7 - symbol:LHX4 "Uncharacterized protein" ... 139 1.1e-14 2
UNIPROTKB|Q969G2 - symbol:LHX4 "LIM/homeobox protein Lhx4... 139 1.1e-14 2
MGI|MGI:101776 - symbol:Lhx4 "LIM homeobox protein 4" spe... 139 1.1e-14 2
UNIPROTKB|F1S681 - symbol:LHX4 "Uncharacterized protein" ... 139 1.1e-14 2
UNIPROTKB|F1PCI5 - symbol:LHX4 "Uncharacterized protein" ... 139 1.1e-14 2
UNIPROTKB|E1BQX0 - symbol:LHX5 "Uncharacterized protein" ... 125 4.8e-14 2
FB|FBgn0026411 - symbol:Lim1 species:7227 "Drosophila mel... 126 1.6e-13 2
FB|FBgn0002023 - symbol:Lim3 "Lim3" species:7227 "Drosoph... 184 1.9e-13 1
UNIPROTKB|F6QGM2 - symbol:LHX3 "LIM/homeobox protein Lhx3... 124 2.9e-13 2
UNIPROTKB|Q6PVU4 - symbol:Q6PVU4 "Lim1" species:9986 "Ory... 125 3.1e-13 2
UNIPROTKB|F1RKD0 - symbol:LHX5 "Uncharacterized protein" ... 120 3.4e-13 2
UNIPROTKB|A6QQY6 - symbol:LHX5 "Uncharacterized protein" ... 120 3.4e-13 2
UNIPROTKB|E2RRP3 - symbol:LHX5 "Uncharacterized protein" ... 120 3.4e-13 2
UNIPROTKB|Q9H2C1 - symbol:LHX5 "LIM/homeobox protein Lhx5... 120 3.4e-13 2
MGI|MGI:107792 - symbol:Lhx5 "LIM homeobox protein 5" spe... 120 3.4e-13 2
RGD|71079 - symbol:Lhx5 "LIM homeobox 5" species:10116 "R... 120 3.4e-13 2
UNIPROTKB|Q5ISK2 - symbol:Q5ISK2 "LIM homeobox protein 1"... 125 5.3e-13 2
UNIPROTKB|F1NX79 - symbol:LHX1 "LIM/homeobox protein Lhx1... 125 5.4e-13 2
UNIPROTKB|P53411 - symbol:LHX1 "LIM/homeobox protein Lhx1... 125 5.4e-13 2
UNIPROTKB|A7Z015 - symbol:LHX1 "Uncharacterized protein" ... 125 5.4e-13 2
UNIPROTKB|E2RMA8 - symbol:LHX1 "Uncharacterized protein" ... 125 5.4e-13 2
UNIPROTKB|P48742 - symbol:LHX1 "LIM/homeobox protein Lhx1... 125 5.4e-13 2
UNIPROTKB|F2Z531 - symbol:LHX1 "Uncharacterized protein" ... 125 5.4e-13 2
UNIPROTKB|P63008 - symbol:Lhx1 "LIM/homeobox protein Lhx1... 125 5.4e-13 2
UNIPROTKB|Q5IS44 - symbol:LHX1 "LIM/homeobox protein Lhx1... 125 5.4e-13 2
UNIPROTKB|Q5IS89 - symbol:LHX1 "LIM/homeobox protein Lhx1... 125 5.4e-13 2
MGI|MGI:99783 - symbol:Lhx1 "LIM homeobox protein 1" spec... 125 5.4e-13 2
RGD|71074 - symbol:Lhx1 "LIM homeobox 1" species:10116 "R... 125 5.4e-13 2
ZFIN|ZDB-GENE-980526-347 - symbol:lhx1a "LIM homeobox 1a"... 121 1.1e-12 2
UNIPROTKB|B7ZP59 - symbol:lhx1 "Homeobox protein" species... 121 1.4e-12 2
UNIPROTKB|P29674 - symbol:lhx1 "LIM/homeobox protein Lhx1... 121 1.4e-12 2
UNIPROTKB|P37137 - symbol:lhx5 "LIM/homeobox protein Lhx5... 118 1.9e-12 2
UNIPROTKB|L7N0D8 - symbol:LHX3 "Uncharacterized protein" ... 134 2.0e-12 2
UNIPROTKB|E2QZZ9 - symbol:LHX3 "Uncharacterized protein" ... 133 2.4e-12 2
ZFIN|ZDB-GENE-980526-116 - symbol:lhx1b "LIM homeobox 1b"... 119 3.8e-12 2
UNIPROTKB|O97581 - symbol:LHX3 "LIM/homeobox protein Lhx3... 129 5.8e-12 2
UNIPROTKB|Q9UBR4 - symbol:LHX3 "LIM/homeobox protein Lhx3... 129 6.6e-12 2
MGI|MGI:102673 - symbol:Lhx3 "LIM homeobox protein 3" spe... 129 6.8e-12 2
UNIPROTKB|G3V8E3 - symbol:Lhx3 "Protein Lhx3" species:101... 129 6.8e-12 2
UNIPROTKB|P53412 - symbol:LHX3 "LIM/homeobox protein Lhx3... 124 6.8e-12 2
UNIPROTKB|G3V9E7 - symbol:Lhx3 "RCG45383, isoform CRA_b" ... 129 6.9e-12 2
UNIPROTKB|Q2TEA4 - symbol:Lhx3 "LIM homeodomain 3 protein... 129 7.0e-12 2
ZFIN|ZDB-GENE-980526-484 - symbol:lhx5 "LIM homeobox 5" s... 115 1.0e-11 2
RGD|620843 - symbol:Lmx1b "LIM homeobox transcription fac... 157 1.7e-11 1
UNIPROTKB|P36200 - symbol:lhx3 "LIM/homeobox protein Lhx3... 124 1.8e-11 2
ZFIN|ZDB-GENE-980526-131 - symbol:lhx3 "LIM homeobox 3" s... 122 2.4e-11 2
WB|WBGene00003000 - symbol:lin-11 species:6239 "Caenorhab... 110 2.8e-11 2
WB|WBGene00000438 - symbol:ceh-14 species:6239 "Caenorhab... 149 5.4e-10 1
UNIPROTKB|P20271 - symbol:ceh-14 "Homeobox protein ceh-14... 149 5.4e-10 1
UNIPROTKB|F1NL26 - symbol:F1NL26 "Uncharacterized protein... 125 8.0e-08 1
UNIPROTKB|F1NLU0 - symbol:F1NLU0 "Uncharacterized protein... 125 2.3e-07 1
ZFIN|ZDB-GENE-041025-1 - symbol:lhx6 "LIM homeobox 6" spe... 124 3.3e-07 1
UNIPROTKB|J9P8Y1 - symbol:LHX6 "Uncharacterized protein" ... 123 3.8e-07 1
UNIPROTKB|E2RA99 - symbol:LHX6 "Uncharacterized protein" ... 123 4.0e-07 1
UNIPROTKB|Q9UPM6 - symbol:LHX6 "LIM/homeobox protein Lhx6... 123 4.0e-07 1
MGI|MGI:1306803 - symbol:Lhx6 "LIM homeobox protein 6" sp... 123 4.0e-07 1
RGD|1306174 - symbol:Lhx6 "LIM homeobox 6" species:10116 ... 123 4.5e-07 1
UNIPROTKB|E1B8I6 - symbol:LHX6 "Uncharacterized protein" ... 123 4.6e-07 1
ZFIN|ZDB-GENE-040624-1 - symbol:isl1l "islet1, like" spec... 121 5.3e-07 1
FB|FBgn0013751 - symbol:Awh "Arrowhead" species:7227 "Dro... 111 4.7e-06 1
ZFIN|ZDB-GENE-031008-2 - symbol:lhx8a "LIM homeobox 8a" s... 112 5.4e-06 1
UNIPROTKB|P53410 - symbol:ISL2 "Insulin gene enhancer pro... 111 6.4e-06 1
UNIPROTKB|J9PBA6 - symbol:LHX8 "Uncharacterized protein" ... 107 1.5e-05 1
UNIPROTKB|C8YLT4 - symbol:Lhx8 "LIM homeobox 8" species:9... 107 1.5e-05 1
ZFIN|ZDB-GENE-081105-153 - symbol:lhx8b "LIM homeobox 8b"... 107 1.5e-05 1
UNIPROTKB|E9PGE3 - symbol:LHX8 "LIM/homeobox protein Lhx8... 107 2.0e-05 1
UNIPROTKB|F1P4G9 - symbol:LHX8 "Uncharacterized protein" ... 107 2.0e-05 1
UNIPROTKB|Q68G74 - symbol:LHX8 "LIM/homeobox protein Lhx8... 107 2.1e-05 1
UNIPROTKB|E2REU0 - symbol:LHX8 "Uncharacterized protein" ... 107 2.4e-05 1
ZFIN|ZDB-GENE-060531-41 - symbol:si:ch211-236k19.2 "si:ch... 104 2.4e-05 1
UNIPROTKB|F1SLQ9 - symbol:LHX6 "Uncharacterized protein" ... 106 2.8e-05 1
WARNING: Descriptions of 45 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0036274 [details] [associations]
symbol:CG4328 species:7227 "Drosophila melanogaster"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0006911
"phagocytosis, engulfment" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0006911 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0048813
GeneTree:ENSGT00700000104050 EMBL:BT050501 RefSeq:NP_648567.2
UniGene:Dm.27132 SMR:Q9VTW3 IntAct:Q9VTW3 MINT:MINT-301655
EnsemblMetazoa:FBtr0301071 GeneID:39405 KEGG:dme:Dmel_CG4328
UCSC:CG4328-RA FlyBase:FBgn0036274 InParanoid:Q9VTW3 OMA:ETNKENC
OrthoDB:EOG4B8GVN GenomeRNAi:39405 NextBio:813480 Uniprot:Q9VTW3
Length = 544
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 87/137 (63%), Positives = 101/137 (73%)
Query: 2 LYVKK-CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPD 60
LY++ CLGC K+ DELVM+ +N G+ L++GEQ+V+KQGQLFCR D
Sbjct: 253 LYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCRFD 312
Query: 61 YEKEVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRK 120
YEKEVEMLQGY D + K DGRRGPKRPRTIL TQQRRAFKASFE+SPKPCRK
Sbjct: 313 YEKEVEMLQGY--DFYGDELFPPKL-DGRRGPKRPRTILNTQQRRAFKASFEVSPKPCRK 369
Query: 121 VREGLARDTGLSVRIVQ 137
VRE LA+DTGLS+RIVQ
Sbjct: 370 VRENLAKDTGLSLRIVQ 386
>UNIPROTKB|G3V877 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10116 "Rattus norvegicus" [GO:0001764 "neuron migration"
evidence=IEA] [GO:0002930 "trabecular meshwork development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021587 "cerebellum morphogenesis" evidence=IEA]
[GO:0021954 "central nervous system neuron development"
evidence=IEA] [GO:0030199 "collagen fibril organization"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0035265 "organ
growth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:620843 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CH474001 OMA:NRMEGMM
UniGene:Rn.92364 Ensembl:ENSRNOT00000022953 Uniprot:G3V877
Length = 372
Score = 210 (79.0 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 43/53 (81%), Positives = 47/53 (88%)
Query: 87 DGR--RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
DG+ R PKRPRTILTTQQRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 189 DGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 241
Score = 148 (57.2 bits), Expect = 2.5e-30, Sum P(2) = 2.5e-30
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 87 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 146
Query: 62 EKEVEMLQGYAQGIPFDLITSSKSHDGRRGPKR 94
EKE ++L + D + S+ DG P +
Sbjct: 147 EKEKDLLSSVSPD-ESDSV-KSEDEDGDMKPAK 177
Score = 37 (18.1 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
C GC + D +M+ ++ L F + +L+C+ DY++
Sbjct: 33 CEGCQRPIS-DRFLMRVNESSWHEECLQCAACQQALTTSCYF--RDRKLYCKQDYQQ 86
>ZFIN|ZDB-GENE-050114-2 [details] [associations]
symbol:lmx1bb "LIM homeobox transcription factor 1,
beta b" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0042472
"inner ear morphogenesis" evidence=IMP] [GO:0021592 "fourth
ventricle development" evidence=IGI] [GO:0060117 "auditory receptor
cell development" evidence=IMP] [GO:0032474 "otolith morphogenesis"
evidence=IMP] [GO:0048752 "semicircular canal morphogenesis"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] [GO:0061386 "closure of optic fissure"
evidence=IGI] [GO:0060041 "retina development in camera-type eye"
evidence=IGI] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-050114-2 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0060041 GO:GO:0032474
GO:GO:0048752 GO:GO:0030917 GO:GO:0060117 GO:GO:0061386
GO:GO:0021592 HOVERGEN:HBG052335 KO:K09371 EMBL:AY894989
IPI:IPI00631669 RefSeq:NP_001020338.2 UniGene:Dr.108678
ProteinModelPortal:Q4VJ29 STRING:Q4VJ29 GeneID:554360
KEGG:dre:554360 CTD:554360 InParanoid:Q4VJ29 NextBio:20880753
Uniprot:Q4VJ29
Length = 375
Score = 215 (80.7 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 44/58 (75%), Positives = 49/58 (84%)
Query: 82 SSKSHDGR--RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+ K DG+ R PKRPRTILTTQQRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 182 TGKGDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 239
Score = 142 (55.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 32/86 (37%), Positives = 47/86 (54%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K GQL C+ DY
Sbjct: 87 LFATKCSGCLEKIAPTEFVMRALECVYHLNCFCCCVCDRQLRKGDEFVLKDGQLLCKSDY 146
Query: 62 EKEVEMLQGYAQGIPFDLITSSKSHD 87
E+E ++L + P D S KS D
Sbjct: 147 EREKDLLGSVS---PDDS-DSEKSED 168
Score = 35 (17.4 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 11/57 (19%), Positives = 23/57 (40%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
C GC + D +M+ ++ L F ++ +L+C+ DY++
Sbjct: 33 CEGCQRPIS-DRFLMRVNESSWHEECLQCAVCQQPLTTSCYF--RERKLYCKYDYQQ 86
>UNIPROTKB|H9L043 [details] [associations]
symbol:H9L043 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02053375
Ensembl:ENSGALT00000021923 OMA:CECERRL Uniprot:H9L043
Length = 280
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 74/148 (50%), Positives = 93/148 (62%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C + + P EL+M+ L+N RLQRG++FV+K+GQL CR DY
Sbjct: 2 LFQTKCSSCLKAIAPSELIMRVLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDY 61
Query: 62 EKEVEMLQGYAQGIPFDLITSSK-----SH-----DGR--RGPKRPRTILTTQQRRAFKA 109
EKE EML + P + + S SH D + + KRPRTILTTQQRRAFKA
Sbjct: 62 EKEKEMLSAISPA-PTESVKSEDEDGGHSHGKGSEDSKDHKRSKRPRTILTTQQRRAFKA 120
Query: 110 SFEISPKPCRKVREGLARDTGLSVRIVQ 137
SFE+S KPCRKVRE LA +TGL+VR+VQ
Sbjct: 121 SFEVSSKPCRKVRETLAAETGLTVRVVQ 148
>UNIPROTKB|Q8UVR3 [details] [associations]
symbol:lmx1b.1 "LIM homeobox transcription factor 1-beta.1"
species:8355 "Xenopus laevis" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0039020 "pronephric nephron tubule development"
evidence=IMP] [GO:0072013 "glomus development" evidence=IEP;IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0072013
GO:GO:0039020 HOVERGEN:HBG052335 KO:K09371 EMBL:AF414086
RefSeq:NP_001083902.1 UniGene:Xl.12464 HSSP:P50480
ProteinModelPortal:Q8UVR3 GeneID:399182 KEGG:xla:399182 CTD:399182
Xenbase:XB-GENE-494754 Uniprot:Q8UVR3
Length = 400
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/154 (47%), Positives = 94/154 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 110 LFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDY 169
Query: 62 EKEVEMLQGYA----QGIPFD-----------LITSSK-SHDGR--RGPKRPRTILTTQQ 103
EKE ++L + + D + K S DG+ R PKRPRTILTTQQ
Sbjct: 170 EKEKDLLSSGSPDDSDSVKSDDEEGDVKPGKGRVNQGKGSDDGKDPRRPKRPRTILTTQQ 229
Query: 104 RRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
RRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 230 RRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 263
>ZFIN|ZDB-GENE-050114-3 [details] [associations]
symbol:lmx1ba "LIM homeobox transcription factor 1,
beta a" species:7955 "Danio rerio" [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0030917
"midbrain-hindbrain boundary development" evidence=IGI] [GO:0030902
"hindbrain development" evidence=IMP] [GO:0021592 "fourth ventricle
development" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0061386 "closure of optic fissure" evidence=IGI]
[GO:0060041 "retina development in camera-type eye" evidence=IGI]
[GO:0002072 "optic cup morphogenesis involved in camera-type eye
development" evidence=IGI] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-050114-3
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060041 GeneTree:ENSGT00700000104050 GO:GO:0030917
GO:GO:0061386 HOGENOM:HOG000231629 GO:GO:0021592 HOVERGEN:HBG052335
EMBL:BX511196 EMBL:CABZ01060115 EMBL:CABZ01060116 EMBL:CABZ01060117
EMBL:CABZ01060118 EMBL:CABZ01060119 EMBL:CABZ01084097
EMBL:CABZ01084098 EMBL:CABZ01084099 EMBL:CABZ01084100 EMBL:AY551078
IPI:IPI00616332 UniGene:Dr.94065 Ensembl:ENSDART00000126544
Uniprot:Q4L1M5
Length = 375
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 75/152 (49%), Positives = 93/152 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P ELVM+ L++ RL +G++FV+K+GQL C+ DY
Sbjct: 87 LFATKCSGCLEKISPTELVMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDY 146
Query: 62 EKEVEM----LQGYAQGIPFDLIT------------SSKSHDGRRGPKRPRTILTTQQRR 105
E+E ++ L + DL S S D RR PKRPRTILTTQQRR
Sbjct: 147 EREKDLASPDLSDSDKSEDEDLDVKPEKGAGGQGKGSDDSKDPRR-PKRPRTILTTQQRR 205
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 206 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 237
>FB|FBgn0052105 [details] [associations]
symbol:CG32105 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 EMBL:AE014296 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
eggNOG:NOG243427 HSSP:P50480 EMBL:BT003467 RefSeq:NP_729801.1
UniGene:Dm.15353 SMR:Q9VTW5 IntAct:Q9VTW5 MINT:MINT-307196
EnsemblMetazoa:FBtr0075953 GeneID:39406 KEGG:dme:Dmel_CG32105
UCSC:CG32105-RB FlyBase:FBgn0052105 InParanoid:Q9VTW5 OMA:CCHAILP
OrthoDB:EOG4BCC40 GenomeRNAi:39406 NextBio:813485 Uniprot:Q9VTW5
Length = 640
Score = 322 (118.4 bits), Expect = 3.4e-28, P = 3.4e-28
Identities = 73/141 (51%), Positives = 89/141 (63%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSR-LQRGEQFVIKQGQLFC-RP 59
L+ KC C + P ELVM+ + N LQ+GEQF+++ GQLFC R
Sbjct: 329 LFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRH 388
Query: 60 DYEKEVEMLQGYAQGIPF---DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPK 116
D EKE+ + AQ F D + DGRRGPKRPRTILT+QQR+ FKASF+ SPK
Sbjct: 389 DLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPK 448
Query: 117 PCRKVREGLARDTGLSVRIVQ 137
PCRKVRE LA+DTGLSVR+VQ
Sbjct: 449 PCRKVREALAKDTGLSVRVVQ 469
>UNIPROTKB|F1N4F7 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:DAAA02032139 IPI:IPI00694069 Ensembl:ENSBTAT00000038767
Uniprot:F1N4F7
Length = 294
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 2 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 61
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 62 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 121
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 122 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 156
>UNIPROTKB|J9NU69 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:NRMEGMM EMBL:AAEX03006872
EMBL:AAEX03006873 Ensembl:ENSCAFT00000044276 Uniprot:J9NU69
Length = 327
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 42 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 101
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 102 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 161
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 162 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 196
>UNIPROTKB|B7ZLH2 [details] [associations]
symbol:LMX1B "LMX1B protein" species:9606 "Homo sapiens"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 HOGENOM:HOG000231629 HOVERGEN:HBG052335 KO:K09371
CTD:4010 EMBL:AL161908 EMBL:AL161731 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 PharmGKB:PA30417
GenomeRNAi:4010 NextBio:15732 EMBL:BC143801 IPI:IPI00956472
RefSeq:NP_001167617.1 SMR:B7ZLH2 STRING:B7ZLH2
Ensembl:ENST00000561065 Uniprot:B7ZLH2
Length = 383
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 87 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 146
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 147 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 206
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 207 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 241
>UNIPROTKB|F8VYP0 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
IPI:IPI00220363 RefSeq:NP_002307.2 UniGene:Hs.129133 DNASU:4010
GeneID:4010 KEGG:hsa:4010 HGNC:HGNC:6654 GenomeRNAi:4010
NextBio:15732 ProteinModelPortal:F8VYP0 SMR:F8VYP0 PRIDE:F8VYP0
Ensembl:ENST00000526117 UCSC:uc004bqi.3 ArrayExpress:F8VYP0
Bgee:F8VYP0 Uniprot:F8VYP0
Length = 395
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 110 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 169
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 170 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 229
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 230 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 264
>UNIPROTKB|F8W7W6 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0001764 "neuron migration" evidence=IEA]
[GO:0002930 "trabecular meshwork development" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0021587 "cerebellum morphogenesis"
evidence=IEA] [GO:0021954 "central nervous system neuron
development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0030901 "midbrain development"
evidence=IEA] [GO:0035108 "limb morphogenesis" evidence=IEA]
[GO:0035265 "organ growth" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0001764 GO:GO:0046872 GO:GO:0008283
GO:GO:0008219 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0030199 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901
GO:GO:0035265 GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GO:GO:0021587 KO:K09371 CTD:4010 EMBL:AL161908 EMBL:AL161731
UniGene:Hs.129133 DNASU:4010 GeneID:4010 KEGG:hsa:4010
HGNC:HGNC:6654 GenomeRNAi:4010 NextBio:15732 OMA:NRMEGMM
IPI:IPI00956472 RefSeq:NP_001167617.1 ProteinModelPortal:F8W7W6
SMR:F8W7W6 Ensembl:ENST00000355497 UCSC:uc011maa.2
ArrayExpress:F8W7W6 Bgee:F8W7W6 Uniprot:F8W7W6
Length = 406
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 110 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 169
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 170 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 229
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 230 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 264
>UNIPROTKB|O60663 [details] [associations]
symbol:LMX1B "LIM homeobox transcription factor 1-beta"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001701 "in utero embryonic development" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0030182 "neuron differentiation" evidence=ISS] [GO:0007275
"multicellular organismal development" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0001701
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0009953 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
CTD:4010 EMBL:AF057135 EMBL:AF059575 EMBL:AF059572 EMBL:AF059573
EMBL:AF059574 EMBL:AL161908 EMBL:AL161731 EMBL:BC069601
EMBL:BC112120 EMBL:BC113491 IPI:IPI00030989 IPI:IPI00220363
RefSeq:NP_001167618.1 RefSeq:NP_002307.2 UniGene:Hs.129133
ProteinModelPortal:O60663 SMR:O60663 IntAct:O60663 STRING:O60663
PhosphoSite:O60663 PaxDb:O60663 PRIDE:O60663 DNASU:4010
Ensembl:ENST00000373474 Ensembl:ENST00000425646 GeneID:4010
KEGG:hsa:4010 UCSC:uc004bqj.3 GeneCards:GC09P129376 HGNC:HGNC:6654
MIM:161200 MIM:602575 neXtProt:NX_O60663 Orphanet:2614
PharmGKB:PA30417 InParanoid:O60663 PhylomeDB:O60663 GenomeRNAi:4010
NextBio:15732 ArrayExpress:O60663 Bgee:O60663 CleanEx:HS_LMX1B
Genevestigator:O60663 GermOnline:ENSG00000136944 Uniprot:O60663
Length = 379
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 87 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 146
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 147 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 206
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 207 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 241
>UNIPROTKB|F1RS26 [details] [associations]
symbol:LMX1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035265 "organ growth" evidence=IEA]
[GO:0035108 "limb morphogenesis" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030199 "collagen fibril
organization" evidence=IEA] [GO:0021954 "central nervous system
neuron development" evidence=IEA] [GO:0021587 "cerebellum
morphogenesis" evidence=IEA] [GO:0009953 "dorsal/ventral pattern
formation" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0002930
"trabecular meshwork development" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0001764 GO:GO:0046872 GO:GO:0008283 GO:GO:0008219
GO:GO:0071542 GO:GO:0043565 GO:GO:0008270 GO:GO:0030199
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0043010 Gene3D:2.10.110.10 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108
GeneTree:ENSGT00700000104050 GO:GO:0021587 OMA:NRMEGMM
EMBL:CU062602 Ensembl:ENSSSCT00000006164 Uniprot:F1RS26
Length = 294
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 2 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 61
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 62 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 121
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 122 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 156
>MGI|MGI:1888519 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10090 "Mus musculus" [GO:0001558 "regulation of cell
growth" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0007420
"brain development" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0021542 "dentate gyrus development" evidence=IMP]
[GO:0021549 "cerebellum development" evidence=IMP] [GO:0021766
"hippocampus development" evidence=IMP] [GO:0021953 "central
nervous system neuron differentiation" evidence=IMP] [GO:0030182
"neuron differentiation" evidence=IMP] [GO:0030901 "midbrain
development" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1888519 GO:GO:0005634 GO:GO:0007411
GO:GO:0001558 GO:GO:0046872 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0010468 GeneTree:ENSGT00700000104050
GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953 CTD:4009
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN EMBL:AF226662 IPI:IPI00123446 RefSeq:NP_387501.1
UniGene:Mm.330081 ProteinModelPortal:Q9JKU8 SMR:Q9JKU8
STRING:Q9JKU8 PhosphoSite:Q9JKU8 PRIDE:Q9JKU8
Ensembl:ENSMUST00000028003 Ensembl:ENSMUST00000111377 GeneID:110648
KEGG:mmu:110648 InParanoid:Q9JKU8 NextBio:364391 Bgee:Q9JKU8
CleanEx:MM_LMX1A Genevestigator:Q9JKU8
GermOnline:ENSMUSG00000026686 Uniprot:Q9JKU8
Length = 382
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 74/152 (48%), Positives = 94/152 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 89 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 62 EKEVEMLQGYA-----QGIPFD---LITSSK------SHDGR--RGPKRPRTILTTQQRR 105
EKE E+L + G D L S+ S DG+ + PKRPRTILTTQQRR
Sbjct: 149 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQRR 208
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 209 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
>MGI|MGI:1100513 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10090 "Mus musculus" [GO:0001764 "neuron migration"
evidence=IMP] [GO:0002930 "trabecular meshwork development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008219 "cell death" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0021587 "cerebellum morphogenesis"
evidence=IMP] [GO:0021954 "central nervous system neuron
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0030199 "collagen fibril organization"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=NAS] [GO:0030901 "midbrain development" evidence=IMP]
[GO:0035108 "limb morphogenesis" evidence=IMP] [GO:0035265 "organ
growth" evidence=IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AF078166
MGI:MGI:1100513 GO:GO:0005634 GO:GO:0001764 GO:GO:0046872
GO:GO:0008283 GO:GO:0008219 GO:GO:0071542 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0030326 GO:GO:0030901 GO:GO:0035265 EMBL:CH466542
GO:GO:0009953 GO:GO:0021954 GeneTree:ENSGT00700000104050
GO:GO:0021587 HOGENOM:HOG000231629 eggNOG:NOG243427
HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN CTD:4010
EMBL:AL929212 EMBL:BC119169 EMBL:BC125469 IPI:IPI00132794
RefSeq:NP_034855.2 UniGene:Mm.39825 ProteinModelPortal:O88609
SMR:O88609 STRING:O88609 PhosphoSite:O88609 PRIDE:O88609
Ensembl:ENSMUST00000041730 GeneID:16917 KEGG:mmu:16917
InParanoid:Q0VEN6 OMA:NRMEGMM NextBio:290964 Bgee:O88609
CleanEx:MM_LMX1B Genevestigator:O88609
GermOnline:ENSMUSG00000038765 GO:GO:0002930 Uniprot:O88609
Length = 372
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 73/155 (47%), Positives = 95/155 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 87 LFAAKCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDY 146
Query: 62 EKEVEMLQGYA---------QGIPFDLI------TSSKSH--DGR--RGPKRPRTILTTQ 102
EKE ++L + + D+ + SK DG+ R PKRPRTILTTQ
Sbjct: 147 EKEKDLLSSVSPDESDSVKSEDEDGDMKPAKGQGSQSKGSGDDGKDPRRPKRPRTILTTQ 206
Query: 103 QRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
QRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 207 QRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 241
>RGD|1304784 [details] [associations]
symbol:Lmx1a "LIM homeobox transcription factor 1 alpha"
species:10116 "Rattus norvegicus" [GO:0001558 "regulation of cell
growth" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IEA;ISO]
[GO:0007417 "central nervous system development" evidence=ISO]
[GO:0007420 "brain development" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0021542 "dentate gyrus development"
evidence=IEA;ISO] [GO:0021549 "cerebellum development"
evidence=IEA;ISO] [GO:0021766 "hippocampus development"
evidence=ISO] [GO:0021953 "central nervous system neuron
differentiation" evidence=IEA;ISO] [GO:0030182 "neuron
differentiation" evidence=ISO] [GO:0030901 "midbrain development"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 RGD:1304784
GO:GO:0005634 GO:GO:0007411 GO:GO:0007420 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021549 GO:GO:0030901
GeneTree:ENSGT00700000104050 GO:GO:0021542 GO:GO:0021953 CTD:4009
KO:K09371 OMA:GNAGMEG IPI:IPI00869778 RefSeq:NP_001099437.2
UniGene:Rn.137284 Ensembl:ENSRNOT00000006163 GeneID:289201
KEGG:rno:289201 NextBio:629386 ArrayExpress:F1LRJ8 Uniprot:F1LRJ8
Length = 382
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 74/152 (48%), Positives = 94/152 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 89 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 62 EKEVEMLQGYA-----QGIPFD---LITSSK------SHDGR--RGPKRPRTILTTQQRR 105
EKE E+L + G D L S+ S DG+ + PKRPRTILTTQQRR
Sbjct: 149 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDGKDHKRPKRPRTILTTQQRR 208
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 209 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
>UNIPROTKB|F1PDJ1 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:4009 KO:K09371 OMA:GNAGMEG
EMBL:AAEX03018391 EMBL:AAEX03018392 RefSeq:XP_851352.2
Ensembl:ENSCAFT00000021142 GeneID:609061 KEGG:cfa:609061
Uniprot:F1PDJ1
Length = 382
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 74/152 (48%), Positives = 94/152 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 89 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 62 EKEVEMLQGYA-----QGIPFDLITSSKS-H--------DGR--RGPKRPRTILTTQQRR 105
EKE E+L + G D + KS H DG+ + PKRPRTILTTQQRR
Sbjct: 149 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAAEDGKDHKRPKRPRTILTTQQRR 208
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 209 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
>UNIPROTKB|F1S229 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:CU179728
Ensembl:ENSSSCT00000006937 Uniprot:F1S229
Length = 295
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 74/152 (48%), Positives = 94/152 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 2 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 61
Query: 62 EKEVEMLQGYA-----QGIPFDLITSSKS-H--------DGR--RGPKRPRTILTTQQRR 105
EKE E+L + G D + KS H DG+ + PKRPRTILTTQQRR
Sbjct: 62 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAPEDGKDHKRPKRPRTILTTQQRR 121
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 122 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 153
>UNIPROTKB|I3L863 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 OMA:GNAGMEG EMBL:CU179728 Ensembl:ENSSSCT00000032564
Uniprot:I3L863
Length = 296
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 74/152 (48%), Positives = 94/152 (61%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 2 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 61
Query: 62 EKEVEMLQGYA-----QGIPFDLITSSKS-H--------DGR--RGPKRPRTILTTQQRR 105
EKE E+L + G D + KS H DG+ + PKRPRTILTTQQRR
Sbjct: 62 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAPEDGKDHKRPKRPRTILTTQQRR 121
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 122 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 153
>UNIPROTKB|F1MC25 [details] [associations]
symbol:LMX1A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0071542
"dopaminergic neuron differentiation" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0021953
"central nervous system neuron differentiation" evidence=IEA]
[GO:0021549 "cerebellum development" evidence=IEA] [GO:0021542
"dentate gyrus development" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0001558 "regulation of cell growth"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0007411 GO:GO:0001558 GO:GO:0046872 GO:GO:0071542
GO:GO:0043565 GO:GO:0008270 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GeneTree:ENSGT00700000104050 GO:GO:0021542
GO:GO:0021953 CTD:4009 KO:K09371 OMA:GNAGMEG EMBL:DAAA02006817
EMBL:DAAA02006818 EMBL:DAAA02006819 EMBL:DAAA02006820
EMBL:DAAA02006821 EMBL:DAAA02006822 IPI:IPI00701360
RefSeq:NP_001178254.1 UniGene:Bt.106456 Ensembl:ENSBTAT00000015947
GeneID:510296 KEGG:bta:510296 NextBio:20869365 Uniprot:F1MC25
Length = 382
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 73/152 (48%), Positives = 92/152 (60%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 89 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 62 EKEVEMLQGYA-----QGIPFDLITSSKS-HDGRRG----------PKRPRTILTTQQRR 105
EKE E+L + G D + KS H +G PKRPRTILTTQQRR
Sbjct: 149 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGASEDSKDHKRPKRPRTILTTQQRR 208
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 209 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
>UNIPROTKB|Q8TE12 [details] [associations]
symbol:LMX1A "LIM homeobox transcription factor 1-alpha"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001558 "regulation of cell growth" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IEA] [GO:0021542 "dentate
gyrus development" evidence=IEA] [GO:0021549 "cerebellum
development" evidence=IEA] [GO:0021953 "central nervous system
neuron differentiation" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0045665 "negative regulation of
neuron differentiation" evidence=IEA] [GO:0071542 "dopaminergic
neuron differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0007411 GO:GO:0001558
GO:GO:0046872 GO:GO:0071542 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 EMBL:CH471067 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021549
GO:GO:0030901 GO:GO:0021542 HOGENOM:HOG000231629 GO:GO:0021953
EMBL:AY078398 EMBL:AY078391 EMBL:AY078392 EMBL:AY078393
EMBL:AY078394 EMBL:AY078395 EMBL:AY078396 EMBL:AY078397
EMBL:AK127724 EMBL:AL390730 EMBL:AL160058 EMBL:BC119743
EMBL:BC119744 IPI:IPI00152586 IPI:IPI00328299 RefSeq:NP_001167540.1
RefSeq:NP_796372.1 UniGene:Hs.667312 ProteinModelPortal:Q8TE12
SMR:Q8TE12 STRING:Q8TE12 PhosphoSite:Q8TE12 DMDM:27923801
PRIDE:Q8TE12 DNASU:4009 Ensembl:ENST00000294816
Ensembl:ENST00000342310 Ensembl:ENST00000367893 GeneID:4009
KEGG:hsa:4009 UCSC:uc001gcz.2 UCSC:uc021pdy.1 CTD:4009
GeneCards:GC01M165171 HGNC:HGNC:6653 HPA:HPA028051 HPA:HPA030088
MIM:600298 neXtProt:NX_Q8TE12 PharmGKB:PA30416 eggNOG:NOG243427
HOVERGEN:HBG052335 InParanoid:Q8TE12 KO:K09371 OMA:GNAGMEG
OrthoDB:EOG4QFWDN PhylomeDB:Q8TE12 GenomeRNAi:4009 NextBio:15724
ArrayExpress:Q8TE12 Bgee:Q8TE12 CleanEx:HS_LMX1A
Genevestigator:Q8TE12 GermOnline:ENSG00000162761 Uniprot:Q8TE12
Length = 382
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 73/152 (48%), Positives = 92/152 (60%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC E + P+E VM+ + +LQ+G++FV+K+GQL C+ DY
Sbjct: 89 LFAVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
Query: 62 EKEVEMLQGYA-----QGIPFDLITSSKS-HDGRRG----------PKRPRTILTTQQRR 105
EKE E+L + G D + KS H +G PKRPRTILTTQQRR
Sbjct: 149 EKERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGTAEEGKDHKRPKRPRTILTTQQRR 208
Query: 106 AFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
AFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 209 AFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 240
>ZFIN|ZDB-GENE-041014-332 [details] [associations]
symbol:lmx1a "LIM homeobox transcription factor 1,
alpha" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-041014-332 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
HOGENOM:HOG000231629 CTD:4009 HOVERGEN:HBG052335 EMBL:BX296562
IPI:IPI00496510 RefSeq:NP_001020669.1 UniGene:Dr.108111
Ensembl:ENSDART00000019059 GeneID:558036 KEGG:dre:558036
eggNOG:NOG302270 InParanoid:Q5RI65 OMA:RLYSMQD OrthoDB:EOG4P8FJW
NextBio:20882278 Uniprot:Q5RI65
Length = 366
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 68/151 (45%), Positives = 89/151 (58%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXX-GSRLQRGEQFVIKQGQLFCRPD 60
L+V +C GCSE + P ELVM+ + G RLQ+G+ V++ LFC
Sbjct: 80 LFVVRCQGCSEIISPSELVMRAQGSAVFHLRCFCCCVCGCRLQKGDHCVLRGDGLFCATH 139
Query: 61 YEKEVEML----QGYAQGIPFD------LITSSKSH-DG---RRGPKRPRTILTTQQRRA 106
+ ++ G ++ I D L T+ +S+ G + PKRPRTILTTQQRRA
Sbjct: 140 FHNQLASPTSSDSGKSEDIEEDNDDEDNLKTAGESNITGDVEHKRPKRPRTILTTQQRRA 199
Query: 107 FKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
FKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 200 FKASFEVSSKPCRKVRETLAAETGLSVRVVQ 230
>UNIPROTKB|P53413 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOGENOM:HOG000231629
eggNOG:NOG243427 HOVERGEN:HBG052335 KO:K09371 OrthoDB:EOG4QFWDN
EMBL:L39880 EMBL:U41823 IPI:IPI00599399 RefSeq:NP_990689.1
UniGene:Gga.758 ProteinModelPortal:P53413 STRING:P53413
GeneID:396312 KEGG:gga:396312 CTD:4010 InParanoid:P53413
NextBio:20816360 Uniprot:P53413
Length = 377
Score = 217 (81.4 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 80 ITSSK-SHDGR--RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIV 136
+T K S DG+ R PKRPRTILTTQQRRAFKASFE+S KPCRKVRE LA +TGLSVR+V
Sbjct: 180 VTQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 239
Query: 137 Q 137
Q
Sbjct: 240 Q 240
Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 38/120 (31%), Positives = 58/120 (48%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 87 LFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDY 146
Query: 62 EKEVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKV 121
EKE ++L + P D + S D G +P TQ + + PK R +
Sbjct: 147 EKEKDLLSSVS---PDD--SDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTI 201
Score = 36 (17.7 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
C GC + D +M+ ++ L F + +L+C+ DY++
Sbjct: 33 CEGCQRPIS-DRFLMRVNESSWHEECLQCAVCQQALTTSCYF--RDRKLYCKQDYQQ 86
>UNIPROTKB|F1NDZ5 [details] [associations]
symbol:LMX1B "LIM/homeobox protein LMX-1.2" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0002930 "trabecular meshwork
development" evidence=IEA] [GO:0008219 "cell death" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0009953
"dorsal/ventral pattern formation" evidence=IEA] [GO:0021587
"cerebellum morphogenesis" evidence=IEA] [GO:0021954 "central
nervous system neuron development" evidence=IEA] [GO:0030199
"collagen fibril organization" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0035108 "limb morphogenesis"
evidence=IEA] [GO:0035265 "organ growth" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0071542 "dopaminergic neuron
differentiation" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0008283 GO:GO:0008219 GO:GO:0043565
GO:GO:0008270 GO:GO:0030199 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0035265
GeneTree:ENSGT00700000104050 IPI:IPI00599399 OMA:NRMEGMM
EMBL:AADN02026296 EMBL:AADN02026297 EMBL:AADN02026298
EMBL:AADN02031658 Ensembl:ENSGALT00000001376 Uniprot:F1NDZ5
Length = 377
Score = 217 (81.4 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 80 ITSSK-SHDGR--RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIV 136
+T K S DG+ R PKRPRTILTTQQRRAFKASFE+S KPCRKVRE LA +TGLSVR+V
Sbjct: 180 VTQGKGSDDGKDPRRPKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVV 239
Query: 137 Q 137
Q
Sbjct: 240 Q 240
Score = 152 (58.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 38/120 (31%), Positives = 58/120 (48%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC GC EK+ P E VM+ L+ +L++G++FV+K+GQL C+ DY
Sbjct: 87 LFAAKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDY 146
Query: 62 EKEVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKV 121
EKE ++L + P D + S D G +P TQ + + PK R +
Sbjct: 147 EKEKDLLSSVS---PDD--SDSVKSDDEDGDVKPTKGQVTQGKGSDDGKDPRRPKRPRTI 201
Score = 34 (17.0 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 4/10 (40%), Positives = 9/10 (90%)
Query: 54 QLFCRPDYEK 63
+L+C+ DY++
Sbjct: 77 KLYCKQDYQQ 86
>WB|WBGene00002988 [details] [associations]
symbol:lim-6 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030421 "defecation"
evidence=IMP] [GO:0060756 "foraging behavior" evidence=IMP]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0007409
"axonogenesis" evidence=IMP] [GO:0009449 "gamma-aminobutyric acid
biosynthetic process" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0061038 "uterus morphogenesis"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007409 GO:GO:0010468 GO:GO:0030421
GeneTree:ENSGT00700000104050 GO:GO:0009449 eggNOG:NOG243427
GO:GO:0061038 EMBL:FO080324 GeneID:180459 KEGG:cel:CELE_K03E6.1
CTD:180459 GO:GO:0060756 RefSeq:NP_001256980.1
ProteinModelPortal:Q21192 SMR:Q21192 PaxDb:Q21192
EnsemblMetazoa:K03E6.1b UCSC:K03E6.1 WormBase:K03E6.1b
HOGENOM:HOG000018451 InParanoid:Q21192 OMA:HGNIYCE NextBio:909480
ArrayExpress:Q21192 Uniprot:Q21192
Length = 316
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 55/138 (39%), Positives = 75/138 (54%)
Query: 1 MLYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPD 60
MLY K+C C L P ++V + G+++ + G++FCR D
Sbjct: 97 MLYGKRCRRCMTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDEYHVFDGEVFCRND 156
Query: 61 YEKEVEMLQGYAQGIPF-DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCR 119
Y+ + Q + P + + S+ H R+ PKRPRTIL QQRR FK +FE S KP R
Sbjct: 157 YQS-ICNFQTISNPDPLMEEVVRSEIH--RKTPKRPRTILNAQQRRQFKTAFERSSKPSR 213
Query: 120 KVREGLARDTGLSVRIVQ 137
KVRE LA +TGLSVR+VQ
Sbjct: 214 KVREQLANETGLSVRVVQ 231
>UNIPROTKB|E1C2D6 [details] [associations]
symbol:E1C2D6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001558
"regulation of cell growth" evidence=IEA] [GO:0007411 "axon
guidance" evidence=IEA] [GO:0021542 "dentate gyrus development"
evidence=IEA] [GO:0021549 "cerebellum development" evidence=IEA]
[GO:0021953 "central nervous system neuron differentiation"
evidence=IEA] [GO:0030901 "midbrain development" evidence=IEA]
[GO:0045665 "negative regulation of neuron differentiation"
evidence=IEA] [GO:0071542 "dopaminergic neuron differentiation"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001558 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
EMBL:AADN02034025 EMBL:AADN02034026 EMBL:AADN02034027
EMBL:AADN02034028 EMBL:AADN02034029 IPI:IPI00590021
Ensembl:ENSGALT00000005411 OMA:XKSDDEE Uniprot:E1C2D6
Length = 386
Score = 207 (77.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 42/56 (75%), Positives = 48/56 (85%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+ + D +R PKRPRTILTTQQRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 191 AEEGKDHKR-PKRPRTILTTQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 245
Score = 41 (19.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 54 QLFCRPDYEKEV 65
+L+C+ DYEK V
Sbjct: 79 KLYCKLDYEKYV 90
Score = 38 (18.4 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 16/66 (24%), Positives = 24/66 (36%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCR--P 59
+ KK GCSEK + S RG V++ GQ+ C+ P
Sbjct: 93 FFKKPGGCSEKAAEIPSPAAAFSSVSVSCYHCCFVCASEGLRGSNAHVLQMGQIRCKGNP 152
Query: 60 DYEKEV 65
K++
Sbjct: 153 SPAKQI 158
>UNIPROTKB|H9L2C7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0009887 "organ morphogenesis"
evidence=IEA] [GO:0021526 "medial motor column neuron
differentiation" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104177 EMBL:AADN02073379 EMBL:AADN02073380
Ensembl:ENSGALT00000035845 OMA:ERSWHSK Uniprot:H9L2C7
Length = 237
Score = 139 (54.0 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K +++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 118 DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 177
Score = 76 (31.8 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 63 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYE 120
Score = 70 (29.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
+ +C GCS+ + D+ ++K LD ++Q E+ + G ++C+ D+ K
Sbjct: 2 IPQCAGCSQHI-LDKFILKVLDRHWHSSCLKCAD--CQMQLAERCFARAGSVYCKEDFFK 58
Query: 64 EV-EMLQGYAQGIP 76
QGIP
Sbjct: 59 RFGTKCTACQQGIP 72
>ZFIN|ZDB-GENE-060728-1 [details] [associations]
symbol:lhx4 "LIM homeobox 4" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-060728-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 KO:K09374 HOVERGEN:HBG006263 CTD:89884
OMA:LSFRDDQ EMBL:BX294388 EMBL:CR381643 EMBL:CT025732
IPI:IPI00616255 RefSeq:NP_001116445.1 UniGene:Dr.92005
Ensembl:ENSDART00000057644 GeneID:571943 KEGG:dre:571943
NextBio:20890768 Uniprot:B0S5S7
Length = 391
Score = 142 (55.0 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K++++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 146 DYETAKQNDDSETGAKRPRTTITAKQLETLKSAYKNSPKPARHVREQLSSETGLDMRVVQ 205
Score = 76 (31.8 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 91 KCASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYE 148
Score = 59 (25.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
+ +C GCS+ + D+ ++K LD + L ++ + G ++C+ D+ K
Sbjct: 30 IPQCAGCSQHI-LDKFILKVLDRHWHSKCLKCADCHALL--ADKCFSRAGNVYCKEDFFK 86
Query: 64 EV-EMLQGYAQGIP 76
QGIP
Sbjct: 87 RFGTKCASCQQGIP 100
>UNIPROTKB|F1MFM7 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021526
CTD:89884 OMA:LSFRDDQ EMBL:DAAA02043487 EMBL:DAAA02043488
EMBL:DAAA02043489 EMBL:DAAA02043490 IPI:IPI00695061
RefSeq:NP_001179714.1 UniGene:Bt.60930 Ensembl:ENSBTAT00000005216
GeneID:540797 KEGG:bta:540797 NextBio:20878839 Uniprot:F1MFM7
Length = 390
Score = 139 (54.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K +++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 143 DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 202
Score = 76 (31.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 88 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
Score = 65 (27.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 1 MLYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPD 60
M + +C GC++ + D+ ++K LD ++Q ++ + G ++C+ D
Sbjct: 24 MQQIPQCAGCNQHI-LDKFILKVLDRHWHSSCLKCAD--CQMQLADRCFSRAGSVYCKED 80
Query: 61 YEKEV-EMLQGYAQGIP 76
+ K QGIP
Sbjct: 81 FFKRFGTKCTACQQGIP 97
>UNIPROTKB|Q969G2 [details] [associations]
symbol:LHX4 "LIM/homeobox protein Lhx4" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0001890 "placenta development" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 EMBL:AL139141 Orphanet:226307
Orphanet:95496 eggNOG:NOG275246 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0 GO:GO:0021526 EMBL:AY053457
EMBL:AF179849 EMBL:AF405430 EMBL:AF405425 EMBL:AF405426
EMBL:AF405427 EMBL:AF405428 EMBL:AF405429 EMBL:BC011759
EMBL:AB055703 EMBL:AB037683 EMBL:AF282899 EMBL:AH011598
IPI:IPI00169275 RefSeq:NP_203129.1 UniGene:Hs.658487
ProteinModelPortal:Q969G2 SMR:Q969G2 IntAct:Q969G2 STRING:Q969G2
DMDM:209572644 PRIDE:Q969G2 DNASU:89884 Ensembl:ENST00000263726
GeneID:89884 KEGG:hsa:89884 UCSC:uc001goe.2 CTD:89884
GeneCards:GC01P180199 HGNC:HGNC:21734 MIM:262700 MIM:602146
neXtProt:NX_Q969G2 Orphanet:85442 PharmGKB:PA134962876
InParanoid:Q969G2 OMA:LSFRDDQ PhylomeDB:Q969G2 GenomeRNAi:89884
NextBio:76401 ArrayExpress:Q969G2 Bgee:Q969G2 CleanEx:HS_LHX4
Genevestigator:Q969G2 GermOnline:ENSG00000121454 Uniprot:Q969G2
Length = 390
Score = 139 (54.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K +++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 143 DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 202
Score = 76 (31.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 88 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
Score = 65 (27.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 1 MLYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPD 60
M + +C GC++ + D+ ++K LD ++Q ++ + G ++C+ D
Sbjct: 24 MQQIPQCAGCNQHI-LDKFILKVLDRHWHSSCLKCAD--CQMQLADRCFSRAGSVYCKED 80
Query: 61 YEKEV-EMLQGYAQGIP 76
+ K QGIP
Sbjct: 81 FFKRFGTKCTACQQGIP 97
>MGI|MGI:101776 [details] [associations]
symbol:Lhx4 "LIM homeobox protein 4" species:10090 "Mus
musculus" [GO:0001890 "placenta development" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IMP]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IGI] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101776 GO:GO:0005634 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 PDB:3MMK PDBsum:3MMK HOVERGEN:HBG006263 OrthoDB:EOG4SBDZ0
GO:GO:0021526 CTD:89884 OMA:LSFRDDQ EMBL:BC049834 EMBL:AF135415
EMBL:U89343 EMBL:S71659 IPI:IPI00134772 PIR:S46332
RefSeq:NP_034842.2 UniGene:Mm.103624 UniGene:Mm.351266
ProteinModelPortal:P53776 SMR:P53776 STRING:P53776 PRIDE:P53776
Ensembl:ENSMUST00000027740 GeneID:16872 KEGG:mmu:16872
UCSC:uc007dbn.2 InParanoid:P53776 NextBio:290842 Bgee:P53776
CleanEx:MM_LHX4 Genevestigator:P53776 GermOnline:ENSMUSG00000026468
Uniprot:P53776
Length = 390
Score = 139 (54.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K +++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 143 DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 202
Score = 76 (31.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 88 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
Score = 65 (27.9 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 1 MLYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPD 60
M + +C GC++ + D+ ++K LD ++Q ++ + G ++C+ D
Sbjct: 24 MQQIPQCAGCNQHI-LDKFILKVLDRHWHSSCLKCAD--CQMQLADRCFSRAGSVYCKED 80
Query: 61 YEKEV-EMLQGYAQGIP 76
+ K QGIP
Sbjct: 81 FFKRFGTKCTACQQGIP 97
>UNIPROTKB|F1S681 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0021526 "medial
motor column neuron differentiation" evidence=IEA] [GO:0009887
"organ morphogenesis" evidence=IEA] [GO:0008045 "motor neuron axon
guidance" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887 Gene3D:2.10.110.10
GO:GO:0008045 GeneTree:ENSGT00700000104177 GO:GO:0021526
OMA:LSFRDDQ EMBL:CU855640 EMBL:FP476046 Ensembl:ENSSSCT00000016925
Uniprot:F1S681
Length = 369
Score = 139 (54.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K +++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 122 DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 181
Score = 75 (31.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 67 KCTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
Score = 63 (27.2 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 16/74 (21%), Positives = 33/74 (44%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
+ +C GC++ + D+ ++K LD ++Q ++ + G ++C+ D+ K
Sbjct: 6 IPQCAGCNQHI-LDKFILKVLDRHWHSSCLKCAD--CQMQLADRCFSRAGSVYCKEDFFK 62
Query: 64 EV-EMLQGYAQGIP 76
QGIP
Sbjct: 63 RFGTKCTACQQGIP 76
>UNIPROTKB|F1PCI5 [details] [associations]
symbol:LHX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0009887 "organ morphogenesis" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=IEA] [GO:0001890
"placenta development" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009887
Gene3D:2.10.110.10 GO:GO:0008045 GeneTree:ENSGT00700000104177
GO:GO:0021526 OMA:LSFRDDQ EMBL:AAEX03005118 EMBL:AAEX03005119
Ensembl:ENSCAFT00000031328 Uniprot:F1PCI5
Length = 395
Score = 139 (54.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 78 DLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
D T+ ++ D G KRPRT +T +Q K +++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 148 DYETAKQNDDSEAGAKRPRTTITAKQLETLKNAYKNSPKPARHVREQLSSETGLDMRVVQ 207
Score = 76 (31.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V K D +L G++F +++ G+L C+ DYE
Sbjct: 93 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 150
Score = 63 (27.2 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 16/74 (21%), Positives = 33/74 (44%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
+ +C GC++ + D+ ++K LD ++Q ++ + G ++C+ D+ K
Sbjct: 32 IPQCAGCNQHI-LDKFILKVLDRHWHSSCLKCAD--CQMQLADRCFSRAGSVYCKEDFFK 88
Query: 64 EV-EMLQGYAQGIP 76
QGIP
Sbjct: 89 RFGTKCTACQQGIP 102
>UNIPROTKB|E1BQX0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=IEA] [GO:0021766 "hippocampus development" evidence=IEA]
[GO:0021846 "cell proliferation in forebrain" evidence=IEA]
[GO:0021879 "forebrain neuron differentiation" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177 GO:GO:0021937
OMA:SHQGQEM EMBL:AADN02050410 EMBL:AADN02050411 EMBL:AADN02050412
EMBL:AADN02050413 EMBL:AADN02050414 IPI:IPI00574747
Ensembl:ENSGALT00000013517 NextBio:20921461 Uniprot:E1BQX0
Length = 402
Score = 125 (49.1 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 81 TSSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
T++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 167 TNNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 85 (35.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GCS+ + P +LV K + +L GE+ ++I + + C+ DY
Sbjct: 63 KCAGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDYLNS 122
Query: 65 VEMLQG 70
+ +G
Sbjct: 123 PSLKEG 128
Score = 56 (24.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ ++ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKCNLT--EKCFFREGKLYCKKNFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G +QGI P DL+ +++
Sbjct: 62 TKCAGCSQGISPSDLVRKARN 82
>FB|FBgn0026411 [details] [associations]
symbol:Lim1 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0007480 "imaginal disc-derived leg morphogenesis"
evidence=IMP] [GO:0007479 "leg disc proximal/distal pattern
formation" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005525
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0046872
EMBL:AE014298 GO:GO:0043565 GO:GO:0008270 GO:GO:0003924
GO:GO:0006184 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007480 GO:GO:0007479 FlyBase:FBgn0260444
HSSP:P06601 GeneTree:ENSGT00700000104177 eggNOG:NOG257130 KO:K09372
EMBL:AF181631 EMBL:AB034690 RefSeq:NP_572505.1 UniGene:Dm.3025
SMR:Q9V472 IntAct:Q9V472 MINT:MINT-756444 STRING:Q9V472
EnsemblMetazoa:FBtr0071279 GeneID:31813 KEGG:dme:Dmel_CG11354
UCSC:CG11354-RA CTD:31813 FlyBase:FBgn0026411 InParanoid:Q9V472
OMA:GARKMRG OrthoDB:EOG48W9H7 GenomeRNAi:31813 NextBio:775444
Uniprot:Q9V472
Length = 505
Score = 126 (49.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 69 QGYAQGIPF---DLITSSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVRE 123
QG G P D +KS D G KR PRT + +Q K +F +PKP R +RE
Sbjct: 219 QGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIRE 278
Query: 124 GLARDTGLSVRIVQ 137
LA++TGL +R++Q
Sbjct: 279 QLAKETGLPMRVIQ 292
Score = 82 (33.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
Y KC GC + + P +LV K D +L GEQ +V+ + C+ DY
Sbjct: 82 YGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>FB|FBgn0002023 [details] [associations]
symbol:Lim3 "Lim3" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0007399 "nervous system
development" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 HSSP:P50480 FlyBase:FBgn0002023
EMBL:BT003469 ProteinModelPortal:Q86P58 SMR:Q86P58 IntAct:Q86P58
STRING:Q86P58 PRIDE:Q86P58 InParanoid:Q86P58 ArrayExpress:Q86P58
Bgee:Q86P58 Uniprot:Q86P58
Length = 523
Score = 184 (69.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 46/136 (33%), Positives = 68/136 (50%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQ-LFCRPDY 61
Y KC C + P ++V + DN L G++F + + + L C+ DY
Sbjct: 180 YGTKCSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDY 239
Query: 62 EKEVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKV 121
E + A+G+ D S DG + KRPRT +T +Q K ++ SPKP R V
Sbjct: 240 E------EAKAKGLYLD-----GSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHV 288
Query: 122 REGLARDTGLSVRIVQ 137
RE L++DTGL +R+VQ
Sbjct: 289 REQLSQDTGLDMRVVQ 304
>UNIPROTKB|F6QGM2 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0000988 EMBL:AADN02026398 IPI:IPI00820696
ProteinModelPortal:F6QGM2 Ensembl:ENSGALT00000006259
ArrayExpress:F6QGM2 Uniprot:F6QGM2
Length = 214
Score = 124 (48.7 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K ++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 144 TAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Score = 65 (27.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 86 KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
>UNIPROTKB|Q6PVU4 [details] [associations]
symbol:Q6PVU4 "Lim1" species:9986 "Oryctolagus cuniculus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702 HSSP:P10037
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY575212 UniGene:Ocu.3134
ProteinModelPortal:Q6PVU4 Uniprot:Q6PVU4
Length = 348
Score = 125 (49.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 110 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 167
Score = 75 (31.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 4 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 60
>UNIPROTKB|F1RKD0 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
GO:GO:0021937 OMA:SHQGQEM EMBL:CU468670 Ensembl:ENSSSCT00000010817
Uniprot:F1RKD0
Length = 401
Score = 120 (47.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 167 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GC++ + P +LV K +L GE+ +VI + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 121
Query: 65 VEMLQG 70
+ +G
Sbjct: 122 SSLKEG 127
Score = 60 (26.2 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 46 EQFVIKQGQLFCRPDYEKEV-EMLQGYAQGI-PFDLITSSKS 85
E+ ++G+L+C+ D+ + G AQGI P DL+ ++S
Sbjct: 40 EKCFSREGKLYCKNDFFRRFGTKCAGCAQGISPSDLVRKARS 81
>UNIPROTKB|A6QQY6 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 CTD:64211 OMA:SHQGQEM
EMBL:DAAA02045421 EMBL:BC150043 IPI:IPI00867450
RefSeq:NP_001095531.1 UniGene:Bt.88188 Ensembl:ENSBTAT00000004042
GeneID:520759 KEGG:bta:520759 InParanoid:A6QQY6 NextBio:20873176
Uniprot:A6QQY6
Length = 402
Score = 120 (47.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GC++ + P +LV K +L GE+ +VI + + C+ DY
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
Query: 65 VEMLQG 70
+ +G
Sbjct: 123 SSLKEG 128
Score = 67 (28.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD + L E+ ++G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKTNLS--EKCFSREGKLYCKNDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 62 TKCAGCAQGISPSDLVRKARS 82
>UNIPROTKB|E2RRP3 [details] [associations]
symbol:LHX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021766 "hippocampus development"
evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879
GO:GO:0021527 GO:GO:0021702 GeneTree:ENSGT00700000104177 KO:K09372
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AAEX03014690
RefSeq:XP_543409.3 ProteinModelPortal:E2RRP3
Ensembl:ENSCAFT00000014514 GeneID:486283 KEGG:cfa:486283
NextBio:20860085 Uniprot:E2RRP3
Length = 402
Score = 120 (47.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GC++ + P +LV K +L GE+ +VI + + C+ DY
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
Query: 65 VEMLQG 70
+ +G
Sbjct: 123 SSLKEG 128
Score = 67 (28.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD + L E+ ++G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKTNLS--EKCFSREGKLYCKNDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 62 TKCAGCAQGISPSDLVRKARS 82
>UNIPROTKB|Q9H2C1 [details] [associations]
symbol:LHX5 "LIM/homeobox protein Lhx5" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=IEA] [GO:0021766 "hippocampus
development" evidence=IEA] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0021766 GO:GO:0045893 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021846
GO:GO:0021879 GO:GO:0021527 GO:GO:0021702 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 CTD:64211 OMA:SHQGQEM EMBL:AF291181 EMBL:BC109230
IPI:IPI00022760 RefSeq:NP_071758.1 UniGene:Hs.302029
ProteinModelPortal:Q9H2C1 SMR:Q9H2C1 STRING:Q9H2C1
PhosphoSite:Q9H2C1 DMDM:18202938 PRIDE:Q9H2C1
Ensembl:ENST00000261731 GeneID:64211 KEGG:hsa:64211 UCSC:uc001tvj.1
GeneCards:GC12M113900 HGNC:HGNC:14216 MIM:605992 neXtProt:NX_Q9H2C1
PharmGKB:PA30367 InParanoid:Q9H2C1 PhylomeDB:Q9H2C1
GenomeRNAi:64211 NextBio:66119 Bgee:Q9H2C1 CleanEx:HS_LHX5
Genevestigator:Q9H2C1 GermOnline:ENSG00000089116 Uniprot:Q9H2C1
Length = 402
Score = 120 (47.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GC++ + P +LV K +L GE+ +VI + + C+ DY
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
Query: 65 VEMLQG 70
+ +G
Sbjct: 123 SSLKEG 128
Score = 67 (28.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD + L E+ ++G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKTNLS--EKCFSREGKLYCKNDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 62 TKCAGCAQGISPSDLVRKARS 82
>MGI|MGI:107792 [details] [associations]
symbol:Lhx5 "LIM homeobox protein 5" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007267 "cell-cell signaling" evidence=IGI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0021527 "spinal cord association
neuron differentiation" evidence=IGI] [GO:0021549 "cerebellum
development" evidence=IGI] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IGI] [GO:0021766 "hippocampus
development" evidence=IMP] [GO:0021846 "cell proliferation in
forebrain" evidence=IMP] [GO:0021879 "forebrain neuron
differentiation" evidence=IMP] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IGI]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:107792 GO:GO:0005634 GO:GO:0021766
GO:GO:0045893 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021846 GO:GO:0021879 GO:GO:0021527
GO:GO:0021702 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:U61155 EMBL:BC057585 IPI:IPI00118119
RefSeq:NP_032525.1 UniGene:Mm.5151 ProteinModelPortal:P61375
SMR:P61375 STRING:P61375 PhosphoSite:P61375 PRIDE:P61375
Ensembl:ENSMUST00000031591 GeneID:16873 KEGG:mmu:16873
InParanoid:P61375 NextBio:290846 Bgee:P61375 CleanEx:MM_LHX5
Genevestigator:P61375 GermOnline:ENSMUSG00000029595 Uniprot:P61375
Length = 402
Score = 120 (47.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GC++ + P +LV K +L GE+ +VI + + C+ DY
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
Query: 65 VEMLQG 70
+ +G
Sbjct: 123 SSLKEG 128
Score = 67 (28.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD + L E+ ++G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKTNLS--EKCFSREGKLYCKNDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 62 TKCAGCAQGISPSDLVRKARS 82
>RGD|71079 [details] [associations]
symbol:Lhx5 "LIM homeobox 5" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0007267
"cell-cell signaling" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA;ISO] [GO:0021549 "cerebellum
development" evidence=ISO] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA;ISO] [GO:0021766 "hippocampus
development" evidence=IEA;ISO] [GO:0021846 "cell proliferation in
forebrain" evidence=IEA;ISO] [GO:0021879 "forebrain neuron
differentiation" evidence=IEA;ISO] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA;ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71079 GO:GO:0005634 GO:GO:0021766 GO:GO:0045893
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021846 GO:GO:0021879 GO:GO:0021527 GO:GO:0021702
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
CTD:64211 OMA:SHQGQEM EMBL:L35572 IPI:IPI00198471 PIR:I61573
RefSeq:NP_620605.1 UniGene:Rn.54653 ProteinModelPortal:P61376
SMR:P61376 STRING:P61376 Ensembl:ENSRNOT00000001883 GeneID:124451
KEGG:rno:124451 UCSC:RGD:71079 InParanoid:P61376 NextBio:620463
Genevestigator:P61376 GermOnline:ENSRNOG00000001392 Uniprot:P61376
Length = 402
Score = 120 (47.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDYEKE 64
KC GC++ + P +LV K +L GE+ +VI + + C+ DY
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDYLSS 122
Query: 65 VEMLQG 70
+ +G
Sbjct: 123 SSLKEG 128
Score = 67 (28.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD + L E+ ++G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKTNLS--EKCFSREGKLYCKNDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 62 TKCAGCAQGISPSDLVRKARS 82
>UNIPROTKB|Q5ISK2 [details] [associations]
symbol:Q5ISK2 "LIM homeobox protein 1" species:9541 "Macaca
fascicularis" [GO:0001071 "nucleic acid binding transcription
factor activity" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0001657 "ureteric bud development"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001705 "ectoderm formation" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0008045 "motor
neuron axon guidance" evidence=ISS] [GO:0009653 "anatomical
structure morphogenesis" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009880 "embryonic pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009952 "anterior/posterior
pattern specification" evidence=ISS] [GO:0009953 "dorsal/ventral
pattern formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY650378 ProteinModelPortal:Q5ISK2
Uniprot:Q5ISK2
Length = 403
Score = 125 (49.1 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 165 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 222
Score = 75 (31.5 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 59 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 115
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 1 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 57
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 58 TKCAGCAQGISPSDLVRRARS 78
>UNIPROTKB|F1NX79 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0090009
"primitive streak formation" evidence=IEA] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:2000543 "positive regulation of gastrulation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IEA] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=IEA] [GO:0021871 "forebrain
regionalization" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0035852 "horizontal cell localization" evidence=IEA]
[GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0060059 "embryonic retina morphogenesis in
camera-type eye" evidence=IEA] [GO:0060067 "cervix development"
evidence=IEA] [GO:0060068 "vagina development" evidence=IEA]
[GO:0060322 "head development" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045892 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0006366
GO:GO:0090190 GO:GO:0040019 GO:GO:2000768 GO:GO:2000543
GeneTree:ENSGT00700000104177 IPI:IPI00581331 GO:GO:0021937
GO:GO:2000744 OMA:PSEMNEG EMBL:AADN02025742 EMBL:AADN02025743
EMBL:AADN02025744 Ensembl:ENSGALT00000008686 Uniprot:F1NX79
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|P53411 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0048703 "embryonic viscerocranium morphogenesis"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS;NAS] [GO:0090190
"positive regulation of branching involved in ureteric bud
morphogenesis" evidence=ISS] [GO:0001822 "kidney development"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009948 "anterior/posterior axis specification" evidence=ISS]
[GO:0009952 "anterior/posterior pattern specification"
evidence=ISS] [GO:0009953 "dorsal/ventral pattern formation"
evidence=ISS] [GO:0021549 "cerebellum development" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021937 "cerebellar Purkinje cell-granule cell precursor cell
signaling involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0072049 "comma-shaped body morphogenesis" evidence=ISS]
[GO:0072050 "S-shaped body morphogenesis" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0048646
"anatomical structure formation involved in morphogenesis"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0021517 "ventral spinal cord development"
evidence=IEP] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0060429 "epithelium
development" evidence=ISS] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IEP] [GO:0008045 "motor neuron axon
guidance" evidence=IDA] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:2000543 "positive
regulation of gastrulation" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0010468 "regulation
of gene expression" evidence=ISS] [GO:0021527 "spinal cord
association neuron differentiation" evidence=ISS] [GO:0072179
"nephric duct formation" evidence=NAS] [GO:2001141 "regulation of
RNA biosynthetic process" evidence=NAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021522 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 EMBL:L35569
IPI:IPI00581331 PIR:I50375 RefSeq:NP_990744.1 UniGene:Gga.789
ProteinModelPortal:P53411 SMR:P53411 STRING:P53411 GeneID:396381
KEGG:gga:396381 CTD:3975 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 InParanoid:P53411 KO:K09372 OrthoDB:EOG405S1F
NextBio:20816423 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 Uniprot:P53411
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|A7Z015 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008045 "motor neuron axon guidance" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0060429 "epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0010842 "retina layer
formation" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0021937 "cerebellar
Purkinje cell-granule cell precursor cell signaling involved in
regulation of granule cell precursor cell proliferation"
evidence=ISS] [GO:0021871 "forebrain regionalization" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISS]
[GO:0009791 "post-embryonic development" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0007389
"pattern specification process" evidence=ISS] [GO:0007267
"cell-cell signaling" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0001822 "kidney development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0001702 "gastrulation with
mouth forming second" evidence=ISS] [GO:0001655 "urogenital system
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0048703 "embryonic viscerocranium
morphogenesis" evidence=ISS] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0048793 "pronephros development"
evidence=IEA] [GO:0035852 "horizontal cell localization"
evidence=IEA] [GO:0035849 "nephric duct elongation" evidence=IEA]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA] [GO:0021537 "telencephalon development" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001658
"branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001658 GO:GO:0001657
GO:GO:0021527 GO:GO:0021702 GO:GO:0060068 GO:GO:0021537
GO:GO:0001823 GO:GO:0090009 GO:GO:0060059 GO:GO:0048793
GO:GO:2000768 GO:GO:0048703 GO:GO:0060322 GO:GO:0001071
GO:GO:0021517 GO:GO:0001706 GO:GO:0032525 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:DAAA02048434 EMBL:BC153212 IPI:IPI00711186
RefSeq:NP_001098917.1 RefSeq:XP_003583582.1 UniGene:Bt.104440
Ensembl:ENSBTAT00000047689 GeneID:616699 GeneID:786041
KEGG:bta:616699 KEGG:bta:786041 InParanoid:A7Z015 NextBio:20927654
Uniprot:A7Z015
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|E2RMA8 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060429 "epithelium development"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0009880
"embryonic pattern specification" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:2000543
"positive regulation of gastrulation" evidence=ISS] [GO:0040019
"positive regulation of embryonic development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0001706 "endoderm formation" evidence=ISS] [GO:0090009
"primitive streak formation" evidence=ISS] [GO:0001764 "neuron
migration" evidence=ISS] [GO:0021527 "spinal cord association
neuron differentiation" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0048646 "anatomical structure formation involved
in morphogenesis" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021702 "cerebellar Purkinje
cell differentiation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009948 "anterior/posterior axis
specification" evidence=ISS] [GO:0009791 "post-embryonic
development" evidence=ISS] [GO:0009653 "anatomical structure
morphogenesis" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0007267 "cell-cell signaling"
evidence=ISS] [GO:0090190 "positive regulation of branching
involved in ureteric bud morphogenesis" evidence=ISS] [GO:0001071
"nucleic acid binding transcription factor activity" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060067 "cervix development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001702 "gastrulation with mouth forming second"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0072284 "metanephric S-shaped body morphogenesis" evidence=IEA]
[GO:0072283 "metanephric renal vesicle morphogenesis" evidence=IEA]
[GO:0048793 "pronephros development" evidence=IEA] [GO:0035852
"horizontal cell localization" evidence=IEA] [GO:0035849 "nephric
duct elongation" evidence=IEA] [GO:0032525 "somite rostral/caudal
axis specification" evidence=IEA] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0001823 "mesonephros development"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0008045 GO:GO:0006366 GO:GO:0009791 GO:GO:0090190
GO:GO:0010842 GO:GO:0009953 GO:GO:0040019 GO:GO:0009880
GO:GO:0001658 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852 GO:GO:0072283
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:AAEX03006612
RefSeq:XP_003639347.1 ProteinModelPortal:E2RMA8 SMR:E2RMA8
Ensembl:ENSCAFT00000028326 GeneID:100856649 KEGG:cfa:100856649
NextBio:20895890 Uniprot:E2RMA8
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|P48742 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0021517 "ventral spinal cord
development" evidence=IEA] [GO:0021537 "telencephalon development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0035502 "metanephric part of
ureteric bud development" evidence=IEA] [GO:0035849 "nephric duct
elongation" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0044344 "cellular response to
fibroblast growth factor stimulus" evidence=IEA] [GO:0048793
"pronephros development" evidence=IEA] [GO:0072177 "mesonephric
duct development" evidence=IEA] [GO:0072224 "metanephric glomerulus
development" evidence=IEA] [GO:0072278 "metanephric comma-shaped
body morphogenesis" evidence=IEA] [GO:0072283 "metanephric renal
vesicle morphogenesis" evidence=IEA] [GO:0072284 "metanephric
S-shaped body morphogenesis" evidence=IEA] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISS] [GO:0060065 "uterus
development" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0001655 "urogenital system development" evidence=ISS]
[GO:0001657 "ureteric bud development" evidence=ISS] [GO:0001705
"ectoderm formation" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072178 "nephric duct morphogenesis"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0007267 "cell-cell signaling" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009953
"dorsal/ventral pattern formation" evidence=ISS] [GO:0010468
"regulation of gene expression" evidence=ISS] [GO:0021549
"cerebellum development" evidence=ISS] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0072049 "comma-shaped body morphogenesis"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:0072077 "renal vesicle morphogenesis"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0048646 "anatomical structure formation involved in
morphogenesis" evidence=ISS] [GO:0060322 "head development"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0021527 "spinal cord association neuron differentiation"
evidence=ISS] [GO:0001764 "neuron migration" evidence=ISS]
[GO:0090009 "primitive streak formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0060429 "epithelium development"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISS] [GO:0007399
"nervous system development" evidence=TAS] [GO:0009887 "organ
morphogenesis" evidence=TAS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0003714 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0060068 GO:GO:0021537 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543 GO:GO:0072049
GO:GO:0072050 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG EMBL:U14755 EMBL:AC023315
EMBL:AC025882 EMBL:BC111936 EMBL:BC101674 IPI:IPI00550117
PIR:G01507 RefSeq:NP_005559.2 UniGene:Hs.443727
ProteinModelPortal:P48742 SMR:P48742 STRING:P48742
PhosphoSite:P48742 DMDM:60416412 PaxDb:P48742 PRIDE:P48742
DNASU:3975 Ensembl:ENST00000254457 GeneID:3975 KEGG:hsa:3975
UCSC:uc002hnh.2 GeneCards:GC17P035294 HGNC:HGNC:6593 HPA:CAB002770
MIM:601999 neXtProt:NX_P48742 PharmGKB:PA30364 InParanoid:P48742
PhylomeDB:P48742 GenomeRNAi:3975 NextBio:15580 ArrayExpress:P48742
Bgee:P48742 CleanEx:HS_LHX1 Genevestigator:P48742
GermOnline:ENSG00000132130 GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 Uniprot:P48742
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|F2Z531 [details] [associations]
symbol:LHX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:2000768 "positive
regulation of nephron tubule epithelial cell differentiation"
evidence=IEA] [GO:2000744 "positive regulation of anterior head
development" evidence=IEA] [GO:2000543 "positive regulation of
gastrulation" evidence=IEA] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IEA]
[GO:0090009 "primitive streak formation" evidence=IEA] [GO:0072284
"metanephric S-shaped body morphogenesis" evidence=IEA] [GO:0072283
"metanephric renal vesicle morphogenesis" evidence=IEA] [GO:0072049
"comma-shaped body morphogenesis" evidence=IEA] [GO:0061205
"paramesonephric duct development" evidence=IEA] [GO:0060322 "head
development" evidence=IEA] [GO:0060068 "vagina development"
evidence=IEA] [GO:0060067 "cervix development" evidence=IEA]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=IEA] [GO:0048793 "pronephros development" evidence=IEA]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043234 "protein complex"
evidence=IEA] [GO:0040019 "positive regulation of embryonic
development" evidence=IEA] [GO:0035852 "horizontal cell
localization" evidence=IEA] [GO:0035849 "nephric duct elongation"
evidence=IEA] [GO:0035847 "uterine epithelium development"
evidence=IEA] [GO:0035846 "oviduct epithelium development"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IEA] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=IEA]
[GO:0021871 "forebrain regionalization" evidence=IEA] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IEA]
[GO:0021537 "telencephalon development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021517 "ventral spinal cord development" evidence=IEA]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0008045
"motor neuron axon guidance" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001823 "mesonephros development" evidence=IEA] [GO:0001764
"neuron migration" evidence=IEA] [GO:0001706 "endoderm formation"
evidence=IEA] [GO:0001705 "ectoderm formation" evidence=IEA]
[GO:0001658 "branching involved in ureteric bud morphogenesis"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0045892 GO:GO:0001764 GO:GO:0045893 GO:GO:0043234
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0021517 GO:GO:0001706 GO:GO:0032525
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072283 GO:GO:0035849 GO:GO:0035846 GO:GO:0035847
EMBL:CU929499 RefSeq:XP_003131754.1 UniGene:Ssc.22980
ProteinModelPortal:F2Z531 SMR:F2Z531 Ensembl:ENSSSCT00000019256
GeneID:100513681 KEGG:ssc:100513681 Uniprot:F2Z531
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|P63008 [details] [associations]
symbol:Lhx1 "LIM/homeobox protein Lhx1" species:10036
"Mesocricetus auratus" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:X81407 PIR:I48186
ProteinModelPortal:P63008 SMR:P63008 Uniprot:P63008
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|Q5IS44 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:9598 "Pan
troglodytes" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0035846 "oviduct epithelium development" evidence=ISS]
[GO:0035847 "uterine epithelium development" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060065 "uterus development" evidence=ISS] [GO:0060066 "oviduct
development" evidence=ISS] [GO:0060067 "cervix development"
evidence=ISS] [GO:0060068 "vagina development" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372
OrthoDB:EOG405S1F GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665284 RefSeq:NP_001029088.1
UniGene:Ptr.6553 ProteinModelPortal:Q5IS44 SMR:Q5IS44 GeneID:454600
KEGG:ptr:454600 InParanoid:Q5IS44 NextBio:20836212 Uniprot:Q5IS44
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|Q5IS89 [details] [associations]
symbol:LHX1 "LIM/homeobox protein Lhx1" species:39432
"Saimiri boliviensis boliviensis" [GO:0001071 "nucleic acid binding
transcription factor activity" evidence=ISS] [GO:0001655
"urogenital system development" evidence=ISS] [GO:0001657 "ureteric
bud development" evidence=ISS] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0001706 "endoderm formation" evidence=ISS]
[GO:0001764 "neuron migration" evidence=ISS] [GO:0001822 "kidney
development" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0007389 "pattern specification process" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0009653
"anatomical structure morphogenesis" evidence=ISS] [GO:0009791
"post-embryonic development" evidence=ISS] [GO:0009880 "embryonic
pattern specification" evidence=ISS] [GO:0009948
"anterior/posterior axis specification" evidence=ISS] [GO:0009952
"anterior/posterior pattern specification" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0010468 "regulation of gene expression" evidence=ISS]
[GO:0010842 "retina layer formation" evidence=ISS] [GO:0021527
"spinal cord association neuron differentiation" evidence=ISS]
[GO:0021549 "cerebellum development" evidence=ISS] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=ISS]
[GO:0021871 "forebrain regionalization" evidence=ISS] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=ISS] [GO:0035846 "oviduct epithelium
development" evidence=ISS] [GO:0035847 "uterine epithelium
development" evidence=ISS] [GO:0040019 "positive regulation of
embryonic development" evidence=ISS] [GO:0043234 "protein complex"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0048646 "anatomical
structure formation involved in morphogenesis" evidence=ISS]
[GO:0048703 "embryonic viscerocranium morphogenesis" evidence=ISS]
[GO:0060059 "embryonic retina morphogenesis in camera-type eye"
evidence=ISS] [GO:0060065 "uterus development" evidence=ISS]
[GO:0060066 "oviduct development" evidence=ISS] [GO:0060067 "cervix
development" evidence=ISS] [GO:0060068 "vagina development"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0061205
"paramesonephric duct development" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072050
"S-shaped body morphogenesis" evidence=ISS] [GO:0072077 "renal
vesicle morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0001706
GO:GO:0001705 GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 GO:GO:0021937 GO:GO:0021871 GO:GO:0072178
GO:GO:0061205 GO:GO:2000744 GO:GO:0072077 GO:GO:0060067
GO:GO:0035846 GO:GO:0035847 EMBL:AY665239 RefSeq:XP_003929119.1
ProteinModelPortal:Q5IS89 SMR:Q5IS89 GeneID:101033157
Uniprot:Q5IS89
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>MGI|MGI:99783 [details] [associations]
symbol:Lhx1 "LIM homeobox protein 1" species:10090 "Mus
musculus" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=IGI;IMP] [GO:0001655 "urogenital system
development" evidence=IMP] [GO:0001657 "ureteric bud development"
evidence=IMP] [GO:0001702 "gastrulation with mouth forming second"
evidence=IMP] [GO:0001705 "ectoderm formation" evidence=IGI]
[GO:0001706 "endoderm formation" evidence=IMP] [GO:0001764 "neuron
migration" evidence=IMP] [GO:0001822 "kidney development"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0007267 "cell-cell
signaling" evidence=IGI] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007389 "pattern specification
process" evidence=IGI;IMP] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=IMP]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0009880
"embryonic pattern specification" evidence=IGI] [GO:0009948
"anterior/posterior axis specification" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IGI]
[GO:0010468 "regulation of gene expression" evidence=IMP]
[GO:0010842 "retina layer formation" evidence=IMP] [GO:0021527
"spinal cord association neuron differentiation" evidence=IGI]
[GO:0021549 "cerebellum development" evidence=IGI] [GO:0021702
"cerebellar Purkinje cell differentiation" evidence=IGI]
[GO:0021871 "forebrain regionalization" evidence=IGI] [GO:0021937
"cerebellar Purkinje cell-granule cell precursor cell signaling
involved in regulation of granule cell precursor cell
proliferation" evidence=IGI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0032525 "somite rostral/caudal axis
specification" evidence=IMP] [GO:0035846 "oviduct epithelium
development" evidence=IMP] [GO:0035847 "uterine epithelium
development" evidence=IMP] [GO:0035849 "nephric duct elongation"
evidence=IMP] [GO:0035852 "horizontal cell localization"
evidence=IMP] [GO:0040019 "positive regulation of embryonic
development" evidence=IMP] [GO:0043234 "protein complex"
evidence=IDA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IGI;IMP] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=IGI;IMP] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=IMP] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=IMP]
[GO:0060065 "uterus development" evidence=IMP] [GO:0060066 "oviduct
development" evidence=IMP] [GO:0060067 "cervix development"
evidence=IMP] [GO:0060068 "vagina development" evidence=IMP]
[GO:0060322 "head development" evidence=IGI] [GO:0060429
"epithelium development" evidence=IMP] [GO:0061205 "paramesonephric
duct development" evidence=IMP] [GO:0072001 "renal system
development" evidence=IGI] [GO:0072049 "comma-shaped body
morphogenesis" evidence=IMP] [GO:0072050 "S-shaped body
morphogenesis" evidence=IMP] [GO:0072077 "renal vesicle
morphogenesis" evidence=IMP] [GO:0072178 "nephric duct
morphogenesis" evidence=IMP] [GO:0090009 "primitive streak
formation" evidence=IMP] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=IMP]
[GO:2000543 "positive regulation of gastrulation" evidence=IMP]
[GO:2000744 "positive regulation of anterior head development"
evidence=IMP] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=IMP] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
MGI:MGI:99783 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0044344
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0006366 GO:GO:0009791 GO:GO:0090190 GO:GO:0009953
GO:GO:0040019 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0001823 GO:GO:0090009
GO:GO:0060059 GO:GO:0035502 GO:GO:0048793 GO:GO:2000768
GO:GO:0048703 GO:GO:0060322 GO:GO:0001071 GO:GO:0021517
GO:GO:0001706 GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GO:GO:0072049 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0061205 GO:GO:2000744 OMA:PSEMNEG
GO:GO:0060067 GO:GO:0035852 GO:GO:0072177 GO:GO:0072278
GO:GO:0072283 GO:GO:0072284 GO:GO:0035849 GO:GO:0035846
GO:GO:0035847 EMBL:Z27410 EMBL:S68107 EMBL:AF039706 EMBL:AF039705
IPI:IPI00119516 PIR:I48637 RefSeq:NP_032524.1 UniGene:Mm.4965
ProteinModelPortal:P63006 SMR:P63006 STRING:P63006 PRIDE:P63006
Ensembl:ENSMUST00000018842 GeneID:16869 KEGG:mmu:16869
InParanoid:P63006 NextBio:290830 Bgee:P63006 CleanEx:MM_LHX1
Genevestigator:P63006 GermOnline:ENSMUSG00000018698 Uniprot:P63006
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>RGD|71074 [details] [associations]
symbol:Lhx1 "LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0001071 "nucleic acid binding transcription factor activity"
evidence=ISO;ISS] [GO:0001655 "urogenital system development"
evidence=ISO;ISS] [GO:0001657 "ureteric bud development"
evidence=ISO;ISS] [GO:0001658 "branching involved in ureteric bud
morphogenesis" evidence=IEA] [GO:0001702 "gastrulation with mouth
forming second" evidence=ISO;ISS] [GO:0001705 "ectoderm formation"
evidence=ISO;ISS] [GO:0001706 "endoderm formation" evidence=ISO;ISS]
[GO:0001764 "neuron migration" evidence=ISO;ISS] [GO:0001822 "kidney
development" evidence=ISO;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0005622
"intracellular" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007267 "cell-cell signaling"
evidence=ISO;ISS] [GO:0007389 "pattern specification process"
evidence=ISO;ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009653 "anatomical structure morphogenesis" evidence=ISO;ISS]
[GO:0009791 "post-embryonic development" evidence=ISO;ISS]
[GO:0009880 "embryonic pattern specification" evidence=ISO;ISS]
[GO:0009948 "anterior/posterior axis specification"
evidence=ISO;ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO;ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISO;ISS] [GO:0010468 "regulation of gene
expression" evidence=ISO;ISS] [GO:0010842 "retina layer formation"
evidence=ISO;ISS] [GO:0021517 "ventral spinal cord development"
evidence=IEA] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISO;ISS] [GO:0021537 "telencephalon
development" evidence=IEA] [GO:0021549 "cerebellum development"
evidence=ISO;ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISO;ISS] [GO:0021871 "forebrain
regionalization" evidence=ISO;ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation of
granule cell precursor cell proliferation" evidence=ISO;ISS]
[GO:0032525 "somite rostral/caudal axis specification"
evidence=IEA;ISO] [GO:0035502 "metanephric part of ureteric bud
development" evidence=IEP] [GO:0035846 "oviduct epithelium
development" evidence=ISO;ISS] [GO:0035847 "uterine epithelium
development" evidence=ISO;ISS] [GO:0035849 "nephric duct elongation"
evidence=IEA;ISO] [GO:0035852 "horizontal cell localization"
evidence=IEA;ISO] [GO:0040019 "positive regulation of embryonic
development" evidence=ISO;ISS] [GO:0043234 "protein complex"
evidence=ISO;ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0044344 "cellular response to fibroblast growth
factor stimulus" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0048646 "anatomical structure formation
involved in morphogenesis" evidence=ISO;ISS] [GO:0048703 "embryonic
viscerocranium morphogenesis" evidence=ISO;ISS] [GO:0048793
"pronephros development" evidence=IEA] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=ISO;ISS] [GO:0060065
"uterus development" evidence=ISO;ISS] [GO:0060066 "oviduct
development" evidence=ISO;ISS] [GO:0060067 "cervix development"
evidence=ISO;ISS] [GO:0060068 "vagina development" evidence=ISO;ISS]
[GO:0060322 "head development" evidence=ISO;ISS] [GO:0060429
"epithelium development" evidence=ISO;ISS] [GO:0061205
"paramesonephric duct development" evidence=ISO;ISS] [GO:0072001
"renal system development" evidence=ISO] [GO:0072049 "comma-shaped
body morphogenesis" evidence=ISO;ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISO;ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISO;ISS] [GO:0072164 "mesonephric tubule
development" evidence=IEP] [GO:0072177 "mesonephric duct
development" evidence=IEP] [GO:0072178 "nephric duct morphogenesis"
evidence=ISO;ISS] [GO:0072224 "metanephric glomerulus development"
evidence=IEP] [GO:0072278 "metanephric comma-shaped body
morphogenesis" evidence=IEP] [GO:0072283 "metanephric renal vesicle
morphogenesis" evidence=IEA] [GO:0072284 "metanephric S-shaped body
morphogenesis" evidence=IEP] [GO:0090009 "primitive streak
formation" evidence=ISO;ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISO;ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISO;ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISO;ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISO;ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:71074 GO:GO:0005634 GO:GO:0045892 GO:GO:0001764 GO:GO:0045893
GO:GO:0043234 GO:GO:0044344 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001658 GO:GO:0021527 GO:GO:0021702
GO:GO:0060068 GO:GO:0021537 GO:GO:0090009 GO:GO:0060059
GO:GO:0035502 GO:GO:0048793 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0021517 GO:GO:0001706
GO:GO:0032525 GO:GO:0001705 GO:GO:2000543
GeneTree:ENSGT00700000104177 GO:GO:0072224 CTD:3975 eggNOG:NOG257130
HOGENOM:HOG000231630 HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F
GO:GO:0021937 GO:GO:0021871 GO:GO:0072178 GO:GO:0061205
GO:GO:2000744 GO:GO:0072077 OMA:PSEMNEG GO:GO:0060067 GO:GO:0035852
GO:GO:0072177 GO:GO:0072278 GO:GO:0072283 GO:GO:0072284
GO:GO:0035849 GO:GO:0035846 GO:GO:0035847 EMBL:S71523
IPI:IPI00199573 RefSeq:NP_665887.3 UniGene:Rn.127825
ProteinModelPortal:P63007 SMR:P63007 STRING:P63007
PhosphoSite:P63007 PRIDE:P63007 Ensembl:ENSRNOT00000003799
GeneID:257634 KEGG:rno:257634 InParanoid:P63007 NextBio:624166
Genevestigator:P63007 GermOnline:ENSRNOG00000002812 Uniprot:P63007
Length = 406
Score = 125 (49.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 SNENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 75 (31.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 59 (25.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCKRPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRCFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>ZFIN|ZDB-GENE-980526-347 [details] [associations]
symbol:lhx1a "LIM homeobox 1a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001071 "nucleic acid
binding transcription factor activity" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0010842 "retina layer formation" evidence=ISS]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0043234
"protein complex" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0060059 "embryonic
retina morphogenesis in camera-type eye" evidence=ISS] [GO:0072049
"comma-shaped body morphogenesis" evidence=ISS] [GO:0072178
"nephric duct morphogenesis" evidence=ISS] [GO:0090009 "primitive
streak formation" evidence=ISS] [GO:2000543 "positive regulation of
gastrulation" evidence=ISS] [GO:2000768 "positive regulation of
nephron tubule epithelial cell differentiation" evidence=ISS]
[GO:0021702 "cerebellar Purkinje cell differentiation"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0009953 "dorsal/ventral pattern formation" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0060322 "head development" evidence=ISS]
[GO:0060429 "epithelium development" evidence=ISS] [GO:0072077
"renal vesicle morphogenesis" evidence=ISS] [GO:0090190 "positive
regulation of branching involved in ureteric bud morphogenesis"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0001705 "ectoderm formation"
evidence=ISS] [GO:0007267 "cell-cell signaling" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0061205 "paramesonephric duct development"
evidence=ISS] [GO:0072050 "S-shaped body morphogenesis"
evidence=ISS] [GO:2000744 "positive regulation of anterior head
development" evidence=ISS] [GO:0021871 "forebrain regionalization"
evidence=ISS] [GO:0021937 "cerebellar Purkinje cell-granule cell
precursor cell signaling involved in regulation of granule cell
precursor cell proliferation" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-347 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0001764 GO:GO:0045893 GO:GO:0043234 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366
GO:GO:0009791 GO:GO:0090190 GO:GO:0010842 GO:GO:0009953
GO:GO:0040019 GO:GO:0009880 GO:GO:0001657 GO:GO:0021527
GO:GO:0021702 GO:GO:0090009 GO:GO:0060059 GO:GO:2000768
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F GO:GO:0021937
GO:GO:0021871 GO:GO:0072178 GO:GO:0061205 GO:GO:2000744
GO:GO:0072077 EMBL:L37802 IPI:IPI00485723 RefSeq:NP_571291.1
UniGene:Dr.364 ProteinModelPortal:Q90476 SMR:Q90476 STRING:Q90476
Ensembl:ENSDART00000005641 GeneID:30463 KEGG:dre:30463 CTD:30463
InParanoid:Q90476 OMA:PSEMNEG NextBio:20806857 ArrayExpress:Q90476
Bgee:Q90476 Uniprot:Q90476
Length = 405
Score = 121 (47.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 167 NNENDDQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
Score = 76 (31.8 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P++LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY 118
Score = 62 (26.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCERPI-LDRFLLNVLDRAWHIKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRRFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPNDLVRRARS 81
>UNIPROTKB|B7ZP59 [details] [associations]
symbol:lhx1 "Homeobox protein" species:8355 "Xenopus
laevis" [GO:0001071 "nucleic acid binding transcription factor
activity" evidence=ISS] [GO:0001655 "urogenital system development"
evidence=ISS] [GO:0001657 "ureteric bud development" evidence=ISS]
[GO:0001702 "gastrulation with mouth forming second" evidence=ISS]
[GO:0001705 "ectoderm formation" evidence=ISS] [GO:0001706
"endoderm formation" evidence=ISS] [GO:0001764 "neuron migration"
evidence=ISS] [GO:0001822 "kidney development" evidence=ISS]
[GO:0003714 "transcription corepressor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0007267 "cell-cell
signaling" evidence=ISS] [GO:0007389 "pattern specification
process" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=ISS] [GO:0009791 "post-embryonic development"
evidence=ISS] [GO:0009880 "embryonic pattern specification"
evidence=ISS] [GO:0009948 "anterior/posterior axis specification"
evidence=ISS] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISS] [GO:0009953 "dorsal/ventral pattern
formation" evidence=ISS] [GO:0010468 "regulation of gene
expression" evidence=ISS] [GO:0010842 "retina layer formation"
evidence=ISS] [GO:0021527 "spinal cord association neuron
differentiation" evidence=ISS] [GO:0021549 "cerebellum development"
evidence=ISS] [GO:0021702 "cerebellar Purkinje cell
differentiation" evidence=ISS] [GO:0021871 "forebrain
regionalization" evidence=ISS] [GO:0021937 "cerebellar Purkinje
cell-granule cell precursor cell signaling involved in regulation
of granule cell precursor cell proliferation" evidence=ISS]
[GO:0040019 "positive regulation of embryonic development"
evidence=ISS] [GO:0043234 "protein complex" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0048646 "anatomical structure
formation involved in morphogenesis" evidence=ISS] [GO:0048703
"embryonic viscerocranium morphogenesis" evidence=ISS] [GO:0060059
"embryonic retina morphogenesis in camera-type eye" evidence=ISS]
[GO:0060322 "head development" evidence=ISS] [GO:0060429
"epithelium development" evidence=ISS] [GO:0061205 "paramesonephric
duct development" evidence=ISS] [GO:0072049 "comma-shaped body
morphogenesis" evidence=ISS] [GO:0072050 "S-shaped body
morphogenesis" evidence=ISS] [GO:0072077 "renal vesicle
morphogenesis" evidence=ISS] [GO:0072178 "nephric duct
morphogenesis" evidence=ISS] [GO:0090009 "primitive streak
formation" evidence=ISS] [GO:0090190 "positive regulation of
branching involved in ureteric bud morphogenesis" evidence=ISS]
[GO:2000543 "positive regulation of gastrulation" evidence=ISS]
[GO:2000744 "positive regulation of anterior head development"
evidence=ISS] [GO:2000768 "positive regulation of nephron tubule
epithelial cell differentiation" evidence=ISS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0001764
GO:GO:0045893 GO:GO:0043234 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0006366 GO:GO:0009791
GO:GO:0090190 GO:GO:0010842 GO:GO:0009953 GO:GO:0040019
GO:GO:0009880 GO:GO:0001657 GO:GO:0021527 GO:GO:0021702
GO:GO:0090009 GO:GO:0060059 GO:GO:2000768 GO:GO:0048703
GO:GO:0060322 GO:GO:0001071 GO:GO:0001706 GO:GO:0001705
GO:GO:2000543 GO:GO:0072049 GO:GO:0072050 CTD:3975
HOVERGEN:HBG006263 KO:K09372 GO:GO:0021937 GO:GO:0021871
GO:GO:0072178 GO:GO:0061205 GO:GO:2000744 GO:GO:0072077
RefSeq:NP_001084128.1 UniGene:Xl.32655 GeneID:399323
KEGG:xla:399323 Xenbase:XB-GENE-856460 EMBL:BC169338 EMBL:BC169340
SMR:B7ZP59 Uniprot:B7ZP59
Length = 403
Score = 121 (47.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 83 SKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
Score = 75 (31.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 63 (27.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCERPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRRFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|P29674 [details] [associations]
symbol:lhx1 "LIM/homeobox protein Lhx1" species:8355
"Xenopus laevis" [GO:0003002 "regionalization" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0009798 "axis specification" evidence=IMP] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0030903 "notochord
development" evidence=IMP] [GO:0035565 "regulation of pronephros
size" evidence=IGI] [GO:0039003 "pronephric field specification"
evidence=IGI] [GO:0039020 "pronephric nephron tubule development"
evidence=IGI] [GO:0042074 "cell migration involved in gastrulation"
evidence=IMP] [GO:0043009 "chordate embryonic development"
evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0048793 "pronephros development" evidence=IGI;IMP] [GO:0072080
"nephron tubule development" evidence=IGI] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0022008 GO:GO:0009952 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045944 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667 Gene3D:2.10.110.10
GO:GO:0007517 GO:GO:0042074 GO:GO:0009798 GO:GO:0043009
GO:GO:0030903 GO:GO:0039020 GO:GO:0035565 CTD:3975
HOVERGEN:HBG006263 KO:K09372 EMBL:X63889 EMBL:AF013242 PIR:S23802
RefSeq:NP_001084128.1 UniGene:Xl.32655 ProteinModelPortal:P29674
SMR:P29674 GeneID:399323 KEGG:xla:399323 Xenbase:XB-GENE-856460
GO:GO:0039003 Uniprot:P29674
Length = 403
Score = 121 (47.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 83 SKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+++ D G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NENDDQNLGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQ 224
Score = 75 (31.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC++ + P +LV + +L GE+ ++I + + C+ DY
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
Score = 63 (27.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 4 CAGCERPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKNDFFRRFG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCAGCAQGISPSDLVRRARS 81
>UNIPROTKB|P37137 [details] [associations]
symbol:lhx5 "LIM/homeobox protein Lhx5" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 KO:K09372 CTD:64211 EMBL:L42546 EMBL:BC084744
EMBL:Z11587 PIR:S23803 RefSeq:NP_001084038.1 UniGene:Xl.1047
ProteinModelPortal:P37137 SMR:P37137 GeneID:399270 KEGG:xla:399270
Xenbase:XB-GENE-865965 Uniprot:P37137
Length = 402
Score = 118 (46.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 82 SSKSHDGRRGPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++++ + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 168 NNENEEQNSGTKRRGPRTTIKAKQLETLKAAFIATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 77 (32.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GCS + P +LV K + +L GE+ ++I + + C+ DY
Sbjct: 63 KCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
Score = 52 (23.4 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ ++G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHVKCVQCCECKCNLT--EKCFSREGKLYCKTDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G + GI P DL+ +++
Sbjct: 62 TKCAGCSLGISPSDLVRKARN 82
>UNIPROTKB|L7N0D8 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 Ensembl:ENSCAFT00000020228 Uniprot:L7N0D8
Length = 403
Score = 134 (52.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ-SRP 140
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ S P
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVSAP 211
Query: 141 IP 142
P
Sbjct: 212 RP 213
Score = 60 (26.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 94 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>UNIPROTKB|E2QZZ9 [details] [associations]
symbol:LHX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104177
EMBL:AAEX03006759 EMBL:AAEX03006760 EMBL:AAEX03006761
Ensembl:ENSCAFT00000031319 Uniprot:E2QZZ9
Length = 397
Score = 133 (51.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRP 140
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ P
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVAP 210
Score = 60 (26.2 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 94 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>ZFIN|ZDB-GENE-980526-116 [details] [associations]
symbol:lhx1b "LIM homeobox 1b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-116 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HSSP:P06601 GeneTree:ENSGT00700000104177
eggNOG:NOG257130 HOGENOM:HOG000231630 HOVERGEN:HBG006263
EMBL:BX255908 EMBL:AF001299 EMBL:BC162280 EMBL:BC162303
IPI:IPI00505711 RefSeq:NP_571282.1 UniGene:Dr.277
Ensembl:ENSDART00000021159 GeneID:30454 KEGG:dre:30454 CTD:30454
InParanoid:O13106 OrthoDB:EOG49CQ7Z NextBio:20806849 Uniprot:O13106
Length = 402
Score = 119 (46.9 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 78 DLITSSKSHDGRR-GPKR--PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVR 134
D T + +D + G KR PRT + +Q KA+F +PKP R +RE LA++TGL++R
Sbjct: 161 DKETCNNENDEQNLGGKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMR 220
Query: 135 IVQ 137
++Q
Sbjct: 221 VIQ 223
Score = 73 (30.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
Y KC GC++ + P +LV K +L GE+ +++ + + C+ DY
Sbjct: 59 YGTKCGGCAQGISPSDLVRKARSKVFHLNCFTCIMCNKQLSTGEELYILDEYKFVCKEDY 118
Score = 60 (26.2 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 20/81 (24%), Positives = 35/81 (43%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L ++ ++G+L+C+ D+ +
Sbjct: 4 CAGCERPI-LDRFLLSVLDRAWHAKCVQCCDCKCSLT--DRCFSREGRLYCKNDFFRRYG 60
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G AQGI P DL+ ++S
Sbjct: 61 TKCGGCAQGISPSDLVRKARS 81
>UNIPROTKB|O97581 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0045893 GO:GO:0046872
GO:GO:0003677 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006263 EMBL:AF063245 UniGene:Ssc.26829
ProteinModelPortal:O97581 SMR:O97581 Uniprot:O97581
Length = 383
Score = 129 (50.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 132 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 187
Score = 60 (26.2 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 74 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 131
>UNIPROTKB|Q9UBR4 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=TAS]
[GO:0009887 "organ morphogenesis" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0045893 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 EMBL:CH471090 GO:GO:0045944
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0005667 GO:GO:0009887 Gene3D:2.10.110.10 GO:GO:0008045
GO:GO:0021983 GO:GO:0048839 GO:GO:0021527 EMBL:AL138781
GO:GO:0000988 GO:GO:0021521 Orphanet:226307 eggNOG:NOG275246
HOGENOM:HOG000231629 KO:K09374 GO:GO:0021520 HOVERGEN:HBG006263
CTD:8022 OMA:PLCAGCN EMBL:AF156888 EMBL:AF156889 EMBL:AH008761
EMBL:AF096169 EMBL:AF214637 EMBL:AF367089 EMBL:AF367085
EMBL:AF367086 EMBL:AF367087 EMBL:AF367088 IPI:IPI00002747
IPI:IPI00220680 RefSeq:NP_055379.1 RefSeq:NP_835258.1
UniGene:Hs.148427 ProteinModelPortal:Q9UBR4 SMR:Q9UBR4
STRING:Q9UBR4 PhosphoSite:Q9UBR4 DMDM:12643415 PRIDE:Q9UBR4
DNASU:8022 Ensembl:ENST00000371746 Ensembl:ENST00000371748
GeneID:8022 KEGG:hsa:8022 UCSC:uc004cha.3 GeneCards:GC09M139088
HGNC:HGNC:6595 MIM:221750 MIM:600577 neXtProt:NX_Q9UBR4
Orphanet:231720 PharmGKB:PA30366 OrthoDB:EOG4SBDZ0 ChiTaRS:LHX3
GenomeRNAi:8022 NextBio:30588 ArrayExpress:Q9UBR4 Bgee:Q9UBR4
CleanEx:HS_LHX3 Genevestigator:Q9UBR4 GermOnline:ENSG00000107187
GO:GO:0021526 Uniprot:Q9UBR4
Length = 397
Score = 129 (50.5 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 147 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 202
Score = 60 (26.2 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 89 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 146
>MGI|MGI:102673 [details] [associations]
symbol:Lhx3 "LIM homeobox protein 3" species:10090 "Mus
musculus" [GO:0001076 "RNA polymerase II transcription factor
binding transcription factor activity" evidence=IPI] [GO:0001890
"placenta development" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009953 "dorsal/ventral pattern formation"
evidence=IMP] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IGI] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IDA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IGI] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IDA] [GO:0021983
"pituitary gland development" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IMP] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IGI;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:102673 GO:GO:0043066 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0001890 GO:GO:0021983
GO:GO:0048839 GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
eggNOG:NOG275246 GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629
KO:K09374 GO:GO:0021520 PDB:2RGT PDBsum:2RGT PDB:2JTN PDBsum:2JTN
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN OrthoDB:EOG4SBDZ0
GO:GO:0021526 EMBL:L33776 EMBL:L38857 EMBL:L38249 EMBL:L38248
IPI:IPI00118214 IPI:IPI00263557 PIR:I59360 RefSeq:NP_001034742.1
UniGene:Mm.386765 ProteinModelPortal:P50481 SMR:P50481
MINT:MINT-7009840 STRING:P50481 PhosphoSite:P50481 PRIDE:P50481
Ensembl:ENSMUST00000028302 Ensembl:ENSMUST00000054099 GeneID:16871
KEGG:mmu:16871 EvolutionaryTrace:P50481 NextBio:290838 Bgee:P50481
CleanEx:MM_LHX3 Genevestigator:P50481 GermOnline:ENSMUSG00000026934
Uniprot:P50481
Length = 400
Score = 129 (50.5 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 150 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Score = 60 (26.2 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 92 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>UNIPROTKB|G3V8E3 [details] [associations]
symbol:Lhx3 "Protein Lhx3" species:10116 "Rattus
norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 RefSeq:XP_002726117.1 RefSeq:XP_002729190.1
UniGene:Rn.198623 PRIDE:G3V8E3 Ensembl:ENSRNOT00000025047
GeneID:170671 KEGG:rno:170671 NextBio:621169 Uniprot:G3V8E3
Length = 400
Score = 129 (50.5 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 150 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 205
Score = 60 (26.2 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 92 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>UNIPROTKB|P53412 [details] [associations]
symbol:LHX3 "LIM/homeobox protein Lhx3" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0008045 "motor neuron axon guidance"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048839 "inner ear development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0043066 GO:GO:0030154 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0000988 eggNOG:NOG275246
GeneTree:ENSGT00700000104177 HOGENOM:HOG000231629 KO:K09374
HOVERGEN:HBG006263 EMBL:L35570 IPI:IPI00651346 PIR:I50376
RefSeq:NP_001025506.1 UniGene:Gga.91 ProteinModelPortal:P53412
SMR:P53412 STRING:P53412 Ensembl:ENSGALT00000002663 GeneID:373940
KEGG:gga:373940 CTD:8022 InParanoid:P53412 OMA:PLCAGCN
NextBio:20813472 ArrayExpress:P53412 Uniprot:P53412
Length = 395
Score = 124 (48.7 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K ++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 144 TAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Score = 65 (27.9 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 86 KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
>UNIPROTKB|G3V9E7 [details] [associations]
symbol:Lhx3 "RCG45383, isoform CRA_b" species:10116 "Rattus
norvegicus" [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0008045 "motor
neuron axon guidance" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0021520 "spinal cord motor neuron cell fate
specification" evidence=IEA] [GO:0021521 "ventral spinal cord
interneuron specification" evidence=IEA] [GO:0021526 "medial motor
column neuron differentiation" evidence=IEA] [GO:0021527 "spinal
cord association neuron differentiation" evidence=IEA] [GO:0021983
"pituitary gland development" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0048839 "inner ear development" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:71078 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 EMBL:CH474001 GeneTree:ENSGT00700000104177
KO:K09374 CTD:8022 OMA:PLCAGCN UniGene:Rn.198623 GeneID:170671
KEGG:rno:170671 NextBio:621169 RefSeq:XP_001059910.2
RefSeq:XP_001078243.2 Ensembl:ENSRNOT00000045587 Uniprot:G3V9E7
Length = 402
Score = 129 (50.5 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Score = 60 (26.2 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 94 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>UNIPROTKB|Q2TEA4 [details] [associations]
symbol:Lhx3 "LIM homeodomain 3 protein b isoform"
species:9913 "Bos taurus" [GO:0048839 "inner ear development"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021527
"spinal cord association neuron differentiation" evidence=IEA]
[GO:0021526 "medial motor column neuron differentiation"
evidence=IEA] [GO:0021521 "ventral spinal cord interneuron
specification" evidence=IEA] [GO:0021520 "spinal cord motor neuron
cell fate specification" evidence=IEA] [GO:0008045 "motor neuron
axon guidance" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0001890 "placenta development"
evidence=IEA] [GO:0000988 "protein binding transcription factor
activity" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0043066
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0045944
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
Gene3D:2.10.110.10 GO:GO:0008045 GO:GO:0021983 GO:GO:0048839
GO:GO:0021527 GO:GO:0000988 GO:GO:0021521
GeneTree:ENSGT00700000104177 KO:K09374 GO:GO:0021520
HOVERGEN:HBG006263 CTD:8022 OMA:PLCAGCN GO:GO:0021526
EMBL:DAAA02032311 EMBL:AY923832 EMBL:AY923833 IPI:IPI00687531
IPI:IPI01028343 RefSeq:NP_001033709.1 UniGene:Bt.45155
Ensembl:ENSBTAT00000055580 GeneID:539213 KEGG:bta:539213
NextBio:20877851 Uniprot:Q2TEA4
Length = 403
Score = 129 (50.5 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K+++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 152 TAKQREAEATAKRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQ 207
Score = 60 (26.2 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + P ++V + D +L G++F +++ +L C+ DYE
Sbjct: 94 KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>ZFIN|ZDB-GENE-980526-484 [details] [associations]
symbol:lhx5 "LIM homeobox 5" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IMP;IDA] [GO:0001654 "eye development" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-484 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0030900 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0001654
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
HOVERGEN:HBG006263 KO:K09372 OrthoDB:EOG405S1F EMBL:L42547
EMBL:BC098523 IPI:IPI00509409 RefSeq:NP_571293.1 UniGene:Dr.75068
ProteinModelPortal:P52889 SMR:P52889 STRING:P52889
Ensembl:ENSDART00000080693 GeneID:30465 KEGG:dre:30465 CTD:64211
InParanoid:P52889 OMA:SHQGQEM NextBio:20806859 Bgee:P52889
Uniprot:P52889
Length = 399
Score = 115 (45.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
RRGP RT + +Q KA+F +PKP R +RE LA++TGL++R++Q
Sbjct: 180 RRGP---RTTIKAKQLETLKAAFVATPKPTRHIREQLAQETGLNMRVIQ 225
Score = 73 (30.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQ-FVIKQGQLFCRPDY 61
KC GC + + P +LV + +L GE+ +VI + + C+ DY
Sbjct: 63 KCAGCLQGISPSDLVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
Score = 58 (25.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV- 65
C GC + D ++ LD L E+ + G+L+C+ D+ +
Sbjct: 5 CAGCERPI-LDRFLLNVLDRAWHAKCVQCCECNCNLT--EKCFSRDGKLYCKIDFFRRFG 61
Query: 66 EMLQGYAQGI-PFDLITSSKS 85
G QGI P DL+ ++S
Sbjct: 62 TKCAGCLQGISPSDLVRRARS 82
>RGD|620843 [details] [associations]
symbol:Lmx1b "LIM homeobox transcription factor 1 beta"
species:10116 "Rattus norvegicus" [GO:0001764 "neuron migration"
evidence=ISO] [GO:0002930 "trabecular meshwork development"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008219 "cell death" evidence=ISO] [GO:0008283
"cell proliferation" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0021587 "cerebellum morphogenesis"
evidence=ISO] [GO:0021954 "central nervous system neuron
development" evidence=ISO] [GO:0030182 "neuron differentiation"
evidence=ISO] [GO:0030199 "collagen fibril organization"
evidence=ISO] [GO:0030901 "midbrain development" evidence=ISO]
[GO:0035108 "limb morphogenesis" evidence=ISO] [GO:0035265 "organ
growth" evidence=ISO] [GO:0043010 "camera-type eye development"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0071542
"dopaminergic neuron differentiation" evidence=ISO]
InterPro:IPR001356 InterPro:IPR009057 Pfam:PF00046 RGD:620843
GO:GO:0005634 GO:GO:0007411 GO:GO:0001764 GO:GO:0001558
GO:GO:0008283 GO:GO:0008219 GO:GO:0071542 GO:GO:0043565
GO:GO:0030199 GO:GO:0045944 GO:GO:0045665 GO:GO:0003700
Gene3D:1.10.10.60 GO:GO:0043010 GO:GO:0030901 GO:GO:0035265
GO:GO:0009953 GO:GO:0021954 GO:GO:0035108 GO:GO:0021542
GO:GO:0021587 HOGENOM:HOG000231629 eggNOG:NOG243427
OrthoDB:EOG4QFWDN UniGene:Rn.92364 EMBL:AF390073 IPI:IPI00373601
STRING:Q91XM6 UCSC:RGD:620843 InParanoid:Q91XM6 ArrayExpress:Q91XM6
Genevestigator:Q91XM6 Uniprot:Q91XM6
Length = 38
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/37 (83%), Positives = 34/37 (91%)
Query: 101 TQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
TQQRRAFKASFE+S KPCRKVRE LA +TGLSVR+VQ
Sbjct: 1 TQQRRAFKASFEVSSKPCRKVRETLAAETGLSVRVVQ 37
>UNIPROTKB|P36200 [details] [associations]
symbol:lhx3 "LIM/homeobox protein Lhx3" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 KO:K09374 HOVERGEN:HBG006263
CTD:8022 EMBL:Z22702 EMBL:Z11589 PIR:S38821 RefSeq:NP_001081623.1
UniGene:Xl.32 ProteinModelPortal:P36200 SMR:P36200 GeneID:397959
KEGG:xla:397959 Xenbase:XB-GENE-865930 Uniprot:P36200
Length = 395
Score = 124 (48.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K ++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 144 TAKQREAESTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSSETGLDMRVVQ 199
Score = 61 (26.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V + + +L G++F +++ +L C+ DYE
Sbjct: 86 KCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
Score = 56 (24.8 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
+ +C GC++ + D ++K LD ++Q E+ + ++C+ D+ K
Sbjct: 25 IPQCAGCNQHI-VDRFILKVLDRHWHSKCLKCND--CQIQLAEKCFSRGDSVYCKDDFFK 81
Query: 64 EV-EMLQGYAQGIP 76
QGIP
Sbjct: 82 RFGTKCAACQQGIP 95
>ZFIN|ZDB-GENE-980526-131 [details] [associations]
symbol:lhx3 "LIM homeobox 3" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-980526-131 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG275246 KO:K09374 HOVERGEN:HBG006263 CTD:8022 EMBL:U34590
IPI:IPI00486105 RefSeq:NP_571283.1 UniGene:Dr.570
ProteinModelPortal:Q90421 SMR:Q90421 STRING:Q90421 GeneID:30455
KEGG:dre:30455 NextBio:20806850 Uniprot:Q90421
Length = 398
Score = 122 (48.0 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 82 SSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++K + KRPRT +T +Q K ++ SPKP R VRE L+ +TGL +R+VQ
Sbjct: 144 TAKQREADSTAKRPRTTITAKQLETLKNAYNNSPKPARHVREQLSTETGLDMRVVQ 199
Score = 62 (26.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF-VIKQGQLFCRPDYE 62
KC C + + P ++V + D +L G+++ +++ +L C+ DYE
Sbjct: 86 KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYE 143
>WB|WBGene00003000 [details] [associations]
symbol:lin-11 species:6239 "Caenorhabditis elegans"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0001708 "cell
fate specification" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0045595 "regulation of cell differentiation"
evidence=IMP] [GO:0030334 "regulation of cell migration"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0001708 GO:GO:0018991
GO:GO:0040010 GO:GO:0045595 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0030334 Gene3D:2.10.110.10 GO:GO:0007413 GO:GO:0040026
GeneTree:ENSGT00700000104177 eggNOG:NOG257130 HOGENOM:HOG000231630
KO:K09372 EMBL:Z80221 EMBL:X54355 PIR:T27509 RefSeq:NP_492696.1
ProteinModelPortal:P20154 SMR:P20154 STRING:P20154
EnsemblMetazoa:ZC247.3 GeneID:172893 KEGG:cel:CELE_ZC247.3
UCSC:ZC247.3 CTD:172893 WormBase:ZC247.3 InParanoid:P20154
OMA:NDQQFYP NextBio:877423 Uniprot:P20154
Length = 405
Score = 110 (43.8 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 85 SHDGRRGPKR-PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S D +R PRT + +Q K +F +PKP R +RE LA +TGL++R++Q
Sbjct: 233 SDDSNSAKRRGPRTTIKAKQLETLKNAFAATPKPTRHIREQLAAETGLNMRVIQ 286
Score = 74 (31.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLF-CRPDY 61
Y ++C GC KL ++LV + D L G+Q I +G F C+ D+
Sbjct: 123 YSQRCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDF 182
Query: 62 E 62
+
Sbjct: 183 Q 183
>WB|WBGene00000438 [details] [associations]
symbol:ceh-14 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0040040 "thermosensory behavior" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 149 (57.5 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 41/134 (30%), Positives = 63/134 (47%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF--VIKQGQLFCRPDYEK 63
KC C+E + PD +V K ++ L+ GE+F + +L C+ DYE+
Sbjct: 106 KCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQ 165
Query: 64 EVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVRE 123
+ +G DG KRPRT ++ + K +++ S KP R VRE
Sbjct: 166 ARDKHCNELEG------------DGSN--KRPRTTISAKSLETLKQAYQTSSKPARHVRE 211
Query: 124 GLARDTGLSVRIVQ 137
LA +TGL +R+VQ
Sbjct: 212 QLASETGLDMRVVQ 225
>UNIPROTKB|P20271 [details] [associations]
symbol:ceh-14 "Homeobox protein ceh-14" species:6239
"Caenorhabditis elegans" [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0016048 "detection of
temperature stimulus" evidence=IMP] Pfam:PF00412 InterPro:IPR001841
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00184
SMART:SM00389 GO:GO:0005634 GO:GO:0030182 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0040040 EMBL:FO081392
GO:GO:0016048 EMBL:AF244368 PIR:S05710 RefSeq:NP_509273.1
UniGene:Cel.18140 ProteinModelPortal:P20271 SMR:P20271
IntAct:P20271 STRING:P20271 PaxDb:P20271 EnsemblMetazoa:F46C8.5
GeneID:181012 KEGG:cel:CELE_F46C8.5 UCSC:F46C8.5 CTD:181012
WormBase:F46C8.5 eggNOG:NOG275246 GeneTree:ENSGT00700000104177
HOGENOM:HOG000231629 InParanoid:P20271 KO:K09374 OMA:PIESING
NextBio:911980 Uniprot:P20271
Length = 351
Score = 149 (57.5 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 41/134 (30%), Positives = 63/134 (47%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQF--VIKQGQLFCRPDYEK 63
KC C+E + PD +V K ++ L+ GE+F + +L C+ DYE+
Sbjct: 106 KCSSCNEGIVPDHVVRKASNHVYHVECFQCFICKRSLETGEEFYLIADDARLVCKDDYEQ 165
Query: 64 EVEMLQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVRE 123
+ +G DG KRPRT ++ + K +++ S KP R VRE
Sbjct: 166 ARDKHCNELEG------------DGSN--KRPRTTISAKSLETLKQAYQTSSKPARHVRE 211
Query: 124 GLARDTGLSVRIVQ 137
LA +TGL +R+VQ
Sbjct: 212 QLASETGLDMRVVQ 225
>UNIPROTKB|F1NL26 [details] [associations]
symbol:F1NL26 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AADN02026365 EMBL:AADN02026363
EMBL:AADN02026364 IPI:IPI01017195 Ensembl:ENSGALT00000038819
Uniprot:F1NL26
Length = 234
Score = 125 (49.1 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 35/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 89 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 148
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ GI + S+ + KR RT T +Q + +A F P +
Sbjct: 149 ENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 208
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 209 QKLADMTGLSRRVIQ 223
>UNIPROTKB|F1NLU0 [details] [associations]
symbol:F1NLU0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021799
"cerebral cortex radially oriented cell migration" evidence=IEA]
[GO:0021800 "cerebral cortex tangential migration" evidence=IEA]
[GO:0021853 "cerebral cortex GABAergic interneuron migration"
evidence=IEA] [GO:0021877 "forebrain neuron fate commitment"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 OMA:PATDQVM
EMBL:AADN02026365 EMBL:AADN02026363 EMBL:AADN02026364
IPI:IPI00603083 Ensembl:ENSGALT00000002057 Uniprot:F1NLU0
Length = 354
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 35/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 135 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 194
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ GI + S+ + KR RT T +Q + +A F P +
Sbjct: 195 ENLKRAAENGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 254
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 255 QKLADMTGLSRRVIQ 269
>ZFIN|ZDB-GENE-041025-1 [details] [associations]
symbol:lhx6 "LIM homeobox 6" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-041025-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 CTD:26468 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
EMBL:BX571668 EMBL:BC162225 EMBL:AY664403 IPI:IPI00495496
RefSeq:NP_001004015.1 UniGene:Dr.33994 STRING:Q6BDC4
Ensembl:ENSDART00000021100 GeneID:445565 KEGG:dre:445565
InParanoid:Q6BDC4 NextBio:20832189 Uniprot:Q6BDC4
Length = 375
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ V
Sbjct: 157 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMV 216
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 217 ENLKRAAESGSGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 276
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 277 QKLADMTGLSRRVIQ 291
>UNIPROTKB|J9P8Y1 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03006908 EMBL:AAEX03006909
Ensembl:ENSCAFT00000045524 Uniprot:J9P8Y1
Length = 353
Score = 123 (48.4 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 218
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 219 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 278
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 279 QKLADMTGLSRRVIQ 293
>UNIPROTKB|E2RA99 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 CTD:26468 KO:K09375 OMA:PATDQVM
EMBL:AAEX03006908 EMBL:AAEX03006909 RefSeq:XP_548475.3
Ensembl:ENSCAFT00000032295 GeneID:491354 KEGG:cfa:491354
Uniprot:E2RA99
Length = 363
Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 130 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 189
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 190 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 249
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 250 QKLADMTGLSRRVIQ 264
>UNIPROTKB|Q9UPM6 [details] [associations]
symbol:LHX6 "LIM/homeobox protein Lhx6" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0021877 "forebrain
neuron fate commitment" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=ISS] [GO:0021800 "cerebral cortex
tangential migration" evidence=ISS] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=ISS] [GO:0048469 "cell
maturation" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 EMBL:CH471090
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 eggNOG:NOG264882 GO:GO:0048469 GO:GO:0021799
EMBL:AB031041 EMBL:AB031042 EMBL:AK126982 EMBL:AK289827
EMBL:AK297175 EMBL:AK299709 EMBL:AK313808 EMBL:AL162424
EMBL:AL136570 EMBL:BC103936 EMBL:BC103937 IPI:IPI00294419
IPI:IPI00513787 IPI:IPI00852614 IPI:IPI00853518 PIR:T46907
RefSeq:NP_001229262.1 RefSeq:NP_001229263.1 RefSeq:NP_001229264.1
RefSeq:NP_055183.2 RefSeq:NP_954629.2 UniGene:Hs.103137
ProteinModelPortal:Q9UPM6 SMR:Q9UPM6 STRING:Q9UPM6 DMDM:90185239
PRIDE:Q9UPM6 DNASU:26468 Ensembl:ENST00000340587
Ensembl:ENST00000373754 Ensembl:ENST00000373755
Ensembl:ENST00000394319 Ensembl:ENST00000541397
Ensembl:ENST00000559895 GeneID:26468 KEGG:hsa:26468 UCSC:uc004blx.4
UCSC:uc004bly.4 UCSC:uc010mvw.3 CTD:26468 GeneCards:GC09M124964
HGNC:HGNC:21735 HPA:HPA047854 MIM:608215 neXtProt:NX_Q9UPM6
PharmGKB:PA134949308 HOGENOM:HOG000038965 HOVERGEN:HBG006261
InParanoid:Q9UPM6 KO:K09375 OMA:PATDQVM OrthoDB:EOG4GTKD8
PhylomeDB:Q9UPM6 GenomeRNAi:26468 NextBio:48705 ArrayExpress:Q9UPM6
Bgee:Q9UPM6 CleanEx:HS_LHX6 Genevestigator:Q9UPM6
GermOnline:ENSG00000106852 Uniprot:Q9UPM6
Length = 363
Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 130 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 189
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 190 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 249
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 250 QKLADMTGLSRRVIQ 264
>MGI|MGI:1306803 [details] [associations]
symbol:Lhx6 "LIM homeobox protein 6" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0021799 "cerebral cortex radially
oriented cell migration" evidence=IMP] [GO:0021800 "cerebral cortex
tangential migration" evidence=IMP] [GO:0021853 "cerebral cortex
GABAergic interneuron migration" evidence=IMP] [GO:0021877
"forebrain neuron fate commitment" evidence=IGI] [GO:0021884
"forebrain neuron development" evidence=IGI] [GO:0021895 "cerebral
cortex neuron differentiation" evidence=IGI] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048469 "cell maturation" evidence=IMP]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1306803 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0021884
GO:GO:0021877 GO:GO:0021853 GO:GO:0021800 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
HOGENOM:HOG000038965 HOVERGEN:HBG006261 KO:K09375 OrthoDB:EOG4GTKD8
EMBL:AJ000337 EMBL:AB031040 EMBL:AB031039 EMBL:AL773525
EMBL:BC065077 IPI:IPI00457813 IPI:IPI00457814 RefSeq:NP_001076595.1
RefSeq:NP_001076596.1 RefSeq:NP_032526.2 UniGene:Mm.12881
ProteinModelPortal:Q9R1R0 SMR:Q9R1R0 STRING:Q9R1R0 PRIDE:Q9R1R0
Ensembl:ENSMUST00000112961 Ensembl:ENSMUST00000112963
Ensembl:ENSMUST00000112966 Ensembl:ENSMUST00000148852 GeneID:16874
KEGG:mmu:16874 InParanoid:Q6P1H2 NextBio:290850 Bgee:Q9R1R0
Genevestigator:Q9R1R0 Uniprot:Q9R1R0
Length = 363
Score = 123 (48.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 130 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 189
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 190 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 249
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 250 QKLADMTGLSRRVIQ 264
>RGD|1306174 [details] [associations]
symbol:Lhx6 "LIM homeobox 6" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0021799 "cerebral
cortex radially oriented cell migration" evidence=ISO] [GO:0021800
"cerebral cortex tangential migration" evidence=ISO] [GO:0021853
"cerebral cortex GABAergic interneuron migration" evidence=ISO]
[GO:0021877 "forebrain neuron fate commitment" evidence=ISO]
[GO:0021884 "forebrain neuron development" evidence=ISO]
[GO:0021895 "cerebral cortex neuron differentiation" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0048469 "cell maturation" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:1306174 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
IPI:IPI00948544 Ensembl:ENSRNOT00000068564 UCSC:RGD:1306174
Uniprot:D4A2X8
Length = 389
Score = 123 (48.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 156 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 215
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 216 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 275
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 276 QKLADMTGLSRRVIQ 290
>UNIPROTKB|E1B8I6 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0021884 GO:GO:0021877 GO:GO:0021853 GO:GO:0021800
GeneTree:ENSGT00700000104050 GO:GO:0048469 GO:GO:0021799 CTD:26468
KO:K09375 OMA:PATDQVM EMBL:DAAA02032024 EMBL:DAAA02032025
IPI:IPI00716181 RefSeq:NP_001179777.1 UniGene:Bt.32055
Ensembl:ENSBTAT00000007266 GeneID:541261 KEGG:bta:541261
NextBio:20879100 Uniprot:E1B8I6
Length = 392
Score = 123 (48.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 34/135 (25%), Positives = 59/135 (43%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 159 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 218
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 219 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTL 278
Query: 123 EGLARDTGLSVRIVQ 137
+ LA TGLS R++Q
Sbjct: 279 QKLADMTGLSRRVIQ 293
>ZFIN|ZDB-GENE-040624-1 [details] [associations]
symbol:isl1l "islet1, like" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-040624-1 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671
HOGENOM:HOG000236304 eggNOG:NOG295777 EMBL:AY423019 IPI:IPI00495237
RefSeq:NP_001002043.1 UniGene:Dr.156646 ProteinModelPortal:Q6TEN0
SMR:Q6TEN0 GeneID:415131 KEGG:dre:415131 CTD:415131
NextBio:20818810 Uniprot:Q6TEN0
Length = 323
Score = 121 (47.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 38/142 (26%), Positives = 62/142 (43%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L KC C + E VM++ N L G+++V++ GQL C +
Sbjct: 76 LSTSKCAKCDKAFISKEFVMRSQVNIYHVQCFRCEGCNRPLLSGDEYVLQDGQLLCTDHH 135
Query: 62 EK--EVEMLQGYAQGIPFDLITSSKSHDG--RRGPK--RPRTILTTQQRRAFKASFEISP 115
K + Q G P + I S+ S RR + R RT+L+ Q + + +P
Sbjct: 136 NKLMSASINQQKEAGDPSEEIKSTLSWSSMQRRSERATRVRTVLSETQLCMLQTCYTANP 195
Query: 116 KPCRKVREGLARDTGLSVRIVQ 137
+P ++E L TGLS R+++
Sbjct: 196 RPDALMKEQLVEMTGLSPRVIR 217
>FB|FBgn0013751 [details] [associations]
symbol:Awh "Arrowhead" species:7227 "Drosophila melanogaster"
[GO:0007444 "imaginal disc development" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
EMBL:AE014296 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0007444 EMBL:U82539 EMBL:AY071197
EMBL:BT025230 RefSeq:NP_523907.2 RefSeq:NP_728906.1 UniGene:Dm.6063
ProteinModelPortal:Q8IRC7 SMR:Q8IRC7 PRIDE:Q8IRC7
EnsemblMetazoa:FBtr0073156 GeneID:38451 KEGG:dme:Dmel_CG1072
UCSC:CG1072-RA CTD:38451 FlyBase:FBgn0013751 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 HOGENOM:HOG000214908 InParanoid:Q8IRC7
OMA:IHDRYLL OrthoDB:EOG42BVRJ PhylomeDB:Q8IRC7 GenomeRNAi:38451
NextBio:808729 Bgee:Q8IRC7 GermOnline:CG1072 Uniprot:Q8IRC7
Length = 275
Score = 111 (44.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 36/133 (27%), Positives = 56/133 (42%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C + + V + + G +L GEQF + ++ C+ Y + V
Sbjct: 68 KCSKCCRGISASDWVRRARELVFHLACFACDQCGRQLSTGEQFALMDDRVLCKAHYLETV 127
Query: 66 EM-LQGYAQGIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREG 124
E +G D SK+ KR RT T +Q + +A+F+I P + E
Sbjct: 128 EGGTTSSDEGCDGDGYHKSKT-------KRVRTTFTEEQLQVLQANFQIDSNPDGQDLER 180
Query: 125 LARDTGLSVRIVQ 137
+A TGLS R+ Q
Sbjct: 181 IASVTGLSKRVTQ 193
>ZFIN|ZDB-GENE-031008-2 [details] [associations]
symbol:lhx8a "LIM homeobox 8a" species:7955 "Danio
rerio" [GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-031008-2
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
HOVERGEN:HBG006261 KO:K09375 EMBL:BC117601 EMBL:AY664404
IPI:IPI00487481 RefSeq:NP_001003980.1 UniGene:Dr.82056
STRING:Q6BDC3 GeneID:378959 KEGG:dre:378959 CTD:378959
InParanoid:Q6BDC3 NextBio:20813902 Uniprot:Q6BDC3
Length = 332
Score = 112 (44.5 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 33/139 (23%), Positives = 58/139 (41%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + ++ V + N +L GE+F + ++ CR Y+
Sbjct: 108 YGTRCAHCGRNIHSNDWVRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYD 167
Query: 63 KEVEMLQGYAQ---GIPFDLITSSKSHDGRRGP-KRPRTILTTQQRRAFKASFEISPKPC 118
++ L+ + G+ + S+ + P KR RT T Q + +A F P
Sbjct: 168 CMLDNLKRAMENGKGVNVEGAVPSEQEVNQPKPAKRARTSFTADQLQVMQAQFAQDNNPD 227
Query: 119 RKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 228 AQTLQKLAERTGLSRRVIQ 246
>UNIPROTKB|P53410 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 HOVERGEN:HBG004671 EMBL:L35568
IPI:IPI00574086 PIR:I50370 UniGene:Gga.790
ProteinModelPortal:P53410 SMR:P53410 Uniprot:P53410
Length = 319
Score = 111 (44.1 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 36/149 (24%), Positives = 62/149 (41%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C +LVM+ D+ G +L G+QF +++ L CR D+
Sbjct: 47 LFGIKCAQCRAAFSSSDLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCRADH 106
Query: 62 EKEVE--MLQG----------YAQGIPFDLI-TSSKSHDGRRGPKRPRTILTTQQRRAFK 108
+ +G A+ +P +SH R RT+L +Q +
Sbjct: 107 GPPPDGAAARGPRSPAPPPAHLAEPVPGRPPGPRPQSHKAAEKTTRVRTVLNEKQLHTLR 166
Query: 109 ASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+ +P+P ++E L TGLS R+++
Sbjct: 167 TCYAANPRPDALMKEQLVEMTGLSPRVIR 195
>UNIPROTKB|J9PBA6 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:AAEX03004901 EMBL:AAEX03004902
Ensembl:ENSCAFT00000043981 Uniprot:J9PBA6
Length = 295
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 71 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 130
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 131 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 189
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 190 DAQTLQKLAERTGLSRRVIQ 209
>UNIPROTKB|C8YLT4 [details] [associations]
symbol:Lhx8 "LIM homeobox 8" species:9823 "Sus scrofa"
[GO:0005634 "nucleus" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] [GO:0021884 "forebrain
neuron development" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0007611 "learning or memory"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 eggNOG:NOG264882
GeneTree:ENSGT00700000104050 KO:K09375 CTD:431707 OMA:MYWKSDQ
EMBL:CU929623 EMBL:FJ587986 RefSeq:NP_001159787.1 UniGene:Ssc.78542
Ensembl:ENSSSCT00000004181 GeneID:100310798 KEGG:ssc:100310798
Uniprot:C8YLT4
Length = 295
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 71 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 130
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 131 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 189
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 190 DAQTLQKLAERTGLSRRVIQ 209
>ZFIN|ZDB-GENE-081105-153 [details] [associations]
symbol:lhx8b "LIM homeobox 8b" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-081105-153 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CR388090
IPI:IPI00635015 Ensembl:ENSDART00000061776 Uniprot:F1QST6
Length = 295
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/134 (24%), Positives = 55/134 (41%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C C E L + V + N +L GE+F + +L CR Y ++
Sbjct: 85 CSCCRETLHSSDWVHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGEKLLCRIHYSSMLD 144
Query: 67 MLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVRE 123
L A+ + + ++ ++ KR RT T Q + +A F P ++ +
Sbjct: 145 KLNRPAEKGKSVSPEKALAAGCEIKQKPSKRARTSFTADQLQVMQAQFVQDNNPDAQMLQ 204
Query: 124 GLARDTGLSVRIVQ 137
LA TGLS R++Q
Sbjct: 205 SLAEQTGLSRRVIQ 218
>UNIPROTKB|E9PGE3 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884 KO:K09375
EMBL:AC099786 RefSeq:NP_001243043.1 UniGene:Hs.403934 GeneID:431707
KEGG:hsa:431707 CTD:431707 HGNC:HGNC:28838 GenomeRNAi:431707
IPI:IPI00480117 ProteinModelPortal:E9PGE3 SMR:E9PGE3
Ensembl:ENST00000356261 ArrayExpress:E9PGE3 Bgee:E9PGE3
Uniprot:E9PGE3
Length = 346
Score = 107 (42.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 122 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 182 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 240
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 241 DAQTLQKLAERTGLSRRVIQ 260
>UNIPROTKB|F1P4G9 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0042475 "odontogenesis of
dentin-containing tooth" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AADN02012385
IPI:IPI00572692 Ensembl:ENSGALT00000018546 Uniprot:F1P4G9
Length = 347
Score = 107 (42.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 33/140 (23%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 123 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + G+ + L+T + + KR RT T Q + +A F P
Sbjct: 183 CMLDNLKREVENGNGVSMEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 241
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 242 DAQTLQKLAERTGLSRRVIQ 261
>UNIPROTKB|Q68G74 [details] [associations]
symbol:LHX8 "LIM/homeobox protein Lhx8" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007611 "learning or memory" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0021884
"forebrain neuron development" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0008585 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
eggNOG:NOG264882 HSSP:P06601 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 EMBL:AC099786 EMBL:BC040321
IPI:IPI00470355 RefSeq:NP_001001933.1 RefSeq:NP_001243043.1
UniGene:Hs.403934 ProteinModelPortal:Q68G74 SMR:Q68G74
STRING:Q68G74 PhosphoSite:Q68G74 DMDM:296434566 PRIDE:Q68G74
DNASU:431707 Ensembl:ENST00000294638 GeneID:431707 KEGG:hsa:431707
UCSC:uc001dgo.3 CTD:431707 GeneCards:GC01P075594 HGNC:HGNC:28838
MIM:604425 neXtProt:NX_Q68G74 PharmGKB:PA142671553
InParanoid:Q68G74 OMA:MYWKSDQ OrthoDB:EOG48WC27 GenomeRNAi:431707
NextBio:108706 ArrayExpress:Q68G74 Bgee:Q68G74 CleanEx:HS_LHX8
Genevestigator:Q68G74 Uniprot:Q68G74
Length = 356
Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 132 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 192 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 250
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 251 DAQTLQKLAERTGLSRRVIQ 270
>UNIPROTKB|E2REU0 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:AAEX03004901
EMBL:AAEX03004902 Ensembl:ENSCAFT00000032488 Uniprot:E2REU0
Length = 379
Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 34/140 (24%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 155 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 214
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 215 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 273
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 274 DAQTLQKLAERTGLSRRVIQ 293
>ZFIN|ZDB-GENE-060531-41 [details] [associations]
symbol:si:ch211-236k19.2 "si:ch211-236k19.2"
species:7955 "Danio rerio" [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 ZFIN:ZDB-GENE-060531-41
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 EMBL:BX255921 IPI:IPI01006880
Ensembl:ENSDART00000073963 OMA:ANDWIRR Uniprot:F6P152
Length = 255
Score = 104 (41.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 32/133 (24%), Positives = 57/133 (42%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ ++ + + ++ +L GE+F + + Q+ CR Y+ +
Sbjct: 62 KCARCGHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFGLMENQVLCRVHYDITL 121
Query: 66 EMLQGYAQ-GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREG 124
LQ + G L + + KRPRT T++Q + + F P +
Sbjct: 122 LNLQQLSDNGNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQTHFIRDKNPDAATLQR 181
Query: 125 LARDTGLSVRIVQ 137
LA TGLS R++Q
Sbjct: 182 LADTTGLSRRVIQ 194
>UNIPROTKB|F1SLQ9 [details] [associations]
symbol:LHX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0048469 "cell
maturation" evidence=IEA] [GO:0021884 "forebrain neuron
development" evidence=IEA] [GO:0021877 "forebrain neuron fate
commitment" evidence=IEA] [GO:0021853 "cerebral cortex GABAergic
interneuron migration" evidence=IEA] [GO:0021800 "cerebral cortex
tangential migration" evidence=IEA] [GO:0021799 "cerebral cortex
radially oriented cell migration" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021884 GO:GO:0021877 GO:GO:0021853
GO:GO:0021800 GeneTree:ENSGT00700000104050 GO:GO:0048469
GO:GO:0021799 OMA:PATDQVM EMBL:CU041257 Ensembl:ENSSSCT00000006081
Uniprot:F1SLQ9
Length = 362
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 33/135 (24%), Positives = 58/135 (42%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEV 65
KC C ++ + V + N +L GE+F + + ++ CR Y+ +
Sbjct: 149 KCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI 208
Query: 66 EMLQGYAQ---GIPFDLITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVR 122
E L+ A+ G+ + S+ + KR RT T +Q + +A F P +
Sbjct: 209 ENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQVNNPDAQTL 268
Query: 123 EGLARDTGLSVRIVQ 137
+ A TGLS R++Q
Sbjct: 269 QK-ADMTGLSRRVLQ 282
>MGI|MGI:1096343 [details] [associations]
symbol:Lhx8 "LIM homeobox protein 8" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IMP] [GO:0021879 "forebrain neuron differentiation"
evidence=IMP] [GO:0021884 "forebrain neuron development"
evidence=IGI] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1096343 GO:GO:0005634 GO:GO:0008585
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0007611
Gene3D:2.10.110.10 GO:GO:0042475 EMBL:CH466532 GO:GO:0021884
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOGENOM:HOG000038965
HOVERGEN:HBG006261 KO:K09375 CTD:431707 OMA:MYWKSDQ
OrthoDB:EOG48WC27 EMBL:D49658 EMBL:AB007596 EMBL:AJ000338
EMBL:AK165733 EMBL:BC125281 EMBL:BC125283 EMBL:BC144768
IPI:IPI00132791 RefSeq:NP_034843.2 UniGene:Mm.15530
ProteinModelPortal:O35652 SMR:O35652 STRING:O35652
PhosphoSite:O35652 PRIDE:O35652 Ensembl:ENSMUST00000177846
GeneID:16875 KEGG:mmu:16875 InParanoid:Q3TMT2 NextBio:290860
Bgee:O35652 CleanEx:MM_LHX8 Genevestigator:O35652
GermOnline:ENSMUSG00000028201 Uniprot:O35652
Length = 367
Score = 103 (41.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 33/140 (23%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR ++
Sbjct: 153 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 213 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 271
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 272 DAQTLQKLAERTGLSRRVIQ 291
>UNIPROTKB|G3V6V6 [details] [associations]
symbol:Lhx8 "RCG29002" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007611 "learning or memory" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0021884 "forebrain neuron development"
evidence=IEA] [GO:0042475 "odontogenesis of dentin-containing
tooth" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:1308749 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050 EMBL:CH473952
OMA:MYWKSDQ Ensembl:ENSRNOT00000009370 Uniprot:G3V6V6
Length = 367
Score = 103 (41.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 33/140 (23%), Positives = 59/140 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR ++
Sbjct: 153 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKP 117
++ L+ + GI + L+T + + KR RT T Q + +A F P
Sbjct: 213 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQVMQAQFAQDNNP 271
Query: 118 CRKVREGLARDTGLSVRIVQ 137
+ + LA TGLS R++Q
Sbjct: 272 DAQTLQKLAERTGLSRRVIQ 291
>UNIPROTKB|Q68EY3 [details] [associations]
symbol:lhx9 "LIM/homeobox protein Lhx9" species:8355
"Xenopus laevis" [GO:0003714 "transcription corepressor activity"
evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0008045
KO:K09373 HOVERGEN:HBG006262 HSSP:P61969 EMBL:BC080067
RefSeq:NP_001087527.1 UniGene:Xl.28959 ProteinModelPortal:Q68EY3
SMR:Q68EY3 GeneID:447351 KEGG:xla:447351 CTD:447351
Xenbase:XB-GENE-866119 Uniprot:Q68EY3
Length = 331
Score = 76 (31.8 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
VK+C C + E+VM+ ++ L G+QF +K+ ++CR +E
Sbjct: 131 VKRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHFEL 190
Query: 64 EVE 66
V+
Sbjct: 191 LVQ 193
Score = 71 (30.1 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 269 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 313
>ZFIN|ZDB-GENE-990415-133 [details] [associations]
symbol:isl2b "islet2b" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 ZFIN:ZDB-GENE-990415-133 GO:GO:0007275 GO:GO:0005634
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
eggNOG:NOG264882 GeneTree:ENSGT00700000104050 HOVERGEN:HBG004671
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38454 EMBL:AL845510
EMBL:BC095011 EMBL:U09404 IPI:IPI00485578 PIR:I51735
RefSeq:NP_571039.1 UniGene:Dr.20916 ProteinModelPortal:P53407
SMR:P53407 STRING:P53407 Ensembl:ENSDART00000055936 GeneID:30151
KEGG:dre:30151 CTD:30151 InParanoid:P53407 OMA:HAHKQAE
NextBio:20806624 Bgee:P53407 Uniprot:P53407
Length = 358
Score = 78 (32.5 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 81 TSSKSHDGRRGPK--RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
T ++H ++ K R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 178 TPHRNHVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 69 (29.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C+ +LVM+ D+ +L G++F ++ +L CR D+
Sbjct: 84 LFGIKCAKCTLGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRADH 143
Query: 62 EKEVE 66
+E
Sbjct: 144 GLALE 148
>UNIPROTKB|E1BBB7 [details] [associations]
symbol:LHX8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0042475
"odontogenesis of dentin-containing tooth" evidence=IEA]
[GO:0021884 "forebrain neuron development" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEA] [GO:0007611
"learning or memory" evidence=IEA] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0007611 Gene3D:2.10.110.10 GO:GO:0042475 GO:GO:0021884
GeneTree:ENSGT00700000104050 OMA:MYWKSDQ EMBL:DAAA02008298
IPI:IPI00713787 Ensembl:ENSBTAT00000025544 Uniprot:E1BBB7
Length = 371
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 34/142 (23%), Positives = 60/142 (42%)
Query: 3 YVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYE 62
Y +C C + + V + N +L GE+F + + ++ CR Y+
Sbjct: 153 YGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 212
Query: 63 KEVEMLQGYAQ---GIPFD--LITSSKSHDGRRGPKRPRTILTTQQ--RRAFKASFEISP 115
++ L+ + GI + L+T + + KR RT T Q ++ +A F
Sbjct: 213 CMLDNLKREVENGNGISVEGALLTEQDVNHPKPA-KRARTSFTADQLQKQVMQAQFAQDN 271
Query: 116 KPCRKVREGLARDTGLSVRIVQ 137
P + + LA TGLS R++Q
Sbjct: 272 NPDAQTLQKLAERTGLSRRVIQ 293
>UNIPROTKB|D6RAK3 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HGNC:HGNC:6132 EMBL:AC010478 IPI:IPI00966565
Ensembl:ENST00000505475 Bgee:D6RAK3 Uniprot:D6RAK3
Length = 260
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 119 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 162
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 10 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 69
Query: 62 E 62
+
Sbjct: 70 D 70
>UNIPROTKB|E2R2S6 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AAEX03005042 SMR:E2R2S6 Ensembl:ENSCAFT00000018020
Uniprot:E2R2S6
Length = 330
Score = 74 (31.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q I
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQGEQI 316
Score = 72 (30.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
>RGD|621849 [details] [associations]
symbol:Isl2 "ISL LIM homeobox 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005622 "intracellular" evidence=ISO] [GO:0005634
"nucleus" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA;ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA;ISO] [GO:0048663
"neuron fate commitment" evidence=ISO] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576 GO:GO:0021520
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR
GO:GO:0021524 CTD:64843 EMBL:L35571 IPI:IPI00198543 PIR:A55198
RefSeq:NP_065204.1 UniGene:Rn.10026 PDB:1BW5 PDBsum:1BW5
ProteinModelPortal:P50480 SMR:P50480 STRING:P50480 PRIDE:P50480
GeneID:57233 KEGG:rno:57233 UCSC:RGD:621849 InParanoid:P50480
EvolutionaryTrace:P50480 NextBio:611298 ArrayExpress:P50480
Genevestigator:P50480 GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 76 (31.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 82 SSKSHDGRRGPK--RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S ++H ++ K R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 180 SLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 237
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C +LVM+ D+ +L G++F +++ +L CR D+
Sbjct: 84 LFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
Query: 62 EKEVEMLQGYAQGIP 76
+L+ A G P
Sbjct: 144 GL---LLERAAAGSP 155
>UNIPROTKB|P50480 [details] [associations]
symbol:Isl2 "Insulin gene enhancer protein ISL-2"
species:10116 "Rattus norvegicus" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:621849 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GO:GO:0031290 eggNOG:COG5576
GO:GO:0021520 HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304
OrthoDB:EOG4G4GQR GO:GO:0021524 CTD:64843 EMBL:L35571
IPI:IPI00198543 PIR:A55198 RefSeq:NP_065204.1 UniGene:Rn.10026
PDB:1BW5 PDBsum:1BW5 ProteinModelPortal:P50480 SMR:P50480
STRING:P50480 PRIDE:P50480 GeneID:57233 KEGG:rno:57233
UCSC:RGD:621849 InParanoid:P50480 EvolutionaryTrace:P50480
NextBio:611298 ArrayExpress:P50480 Genevestigator:P50480
GermOnline:ENSRNOG00000015336 Uniprot:P50480
Length = 360
Score = 76 (31.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 82 SSKSHDGRRGPK--RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
S ++H ++ K R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 180 SLRTHVHKQAEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 237
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C +LVM+ D+ +L G++F +++ +L CR D+
Sbjct: 84 LFGIKCAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
Query: 62 EKEVEMLQGYAQGIP 76
+L+ A G P
Sbjct: 144 GL---LLERAAAGSP 155
>UNIPROTKB|H0YL54 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:AL590115 HGNC:HGNC:14222
ProteinModelPortal:H0YL54 SMR:H0YL54 Ensembl:ENST00000561173
Bgee:H0YL54 Uniprot:H0YL54
Length = 336
Score = 74 (31.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q I
Sbjct: 274 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQGEQI 322
Score = 72 (30.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 136 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 195
Query: 64 EVEMLQG 70
+LQG
Sbjct: 196 ---LLQG 199
>WB|WBGene00002989 [details] [associations]
symbol:lim-7 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0060323 "head morphogenesis"
evidence=IMP] [GO:0007588 "excretion" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0035262 "gonad
morphogenesis" evidence=IMP] [GO:0060465 "pharynx development"
evidence=IMP] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0002119 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0040011 GO:GO:0007588
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GO:GO:0060465 GeneTree:ENSGT00700000104050 GO:GO:0035262
GO:GO:0060323 KO:K09370 HSSP:P50480 EMBL:U73946 EMBL:FO080336
PIR:T33049 RefSeq:NP_491668.1 UniGene:Cel.18382
ProteinModelPortal:G5EC36 SMR:G5EC36 IntAct:G5EC36
EnsemblMetazoa:C04F1.3 GeneID:172236 KEGG:cel:CELE_C04F1.3
CTD:172236 WormBase:C04F1.3 OMA:DEWDEER NextBio:874619
Uniprot:G5EC36
Length = 452
Score = 76 (31.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 2 LYVKKCLGCSEKLGPDELVMKT-LDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPD 60
L+ +C C +LVM+ N RLQ GE+F IK L+CR D
Sbjct: 113 LFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNCFACVACEKRLQTGEEFQIKNNSLYCRSD 172
Score = 71 (30.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L Q + + + I+ +P ++E L TGLS R+++
Sbjct: 267 RVRTVLNENQLKILRDCYSINSRPDATLKERLVEMTGLSARVIR 310
>ZFIN|ZDB-GENE-980526-562 [details] [associations]
symbol:isl2a "islet2a" species:7955 "Danio rerio"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IGI;IMP] [GO:0048665 "neuron fate specification"
evidence=IGI;IMP] [GO:0048675 "axon extension" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-562 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0048665 GeneTree:ENSGT00700000104050
GO:GO:0048676 eggNOG:COG5576 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR EMBL:D38453 EMBL:X88805
EMBL:U09403 IPI:IPI00483445 PIR:I51734 RefSeq:NP_571045.1
UniGene:Dr.281 ProteinModelPortal:P53406 SMR:P53406
Ensembl:ENSDART00000012862 GeneID:30157 KEGG:dre:30157 CTD:30157
InParanoid:P53406 OMA:RHDSAVQ NextBio:20806628 ArrayExpress:P53406
Bgee:P53406 Uniprot:P53406
Length = 359
Score = 75 (31.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 84 KSHDGRRGPK--RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++H ++ K R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 181 RNHVHKQSEKTTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 69 (29.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C+ +LVM+ DN L G++F ++ +L CR D+
Sbjct: 84 LFGIKCAKCNIGFCSSDLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADH 143
Query: 62 EKEVEMLQGYAQGIPFDLITSSKSH 86
+E + P ++ +S H
Sbjct: 144 GLLMERASAGSPISPGNIHSSRPLH 168
>UNIPROTKB|D6RBJ1 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 HOGENOM:HOG000236304 HGNC:HGNC:6132
EMBL:AC010478 IPI:IPI00966899 ProteinModelPortal:D6RBJ1 SMR:D6RBJ1
Ensembl:ENST00000511384 ArrayExpress:D6RBJ1 Bgee:D6RBJ1
Uniprot:D6RBJ1
Length = 326
Score = 72 (30.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 72 (30.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>UNIPROTKB|E1BSF2 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9031
"Gallus gallus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
Pfam:PF00046 PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071
SMART:SM00132 SMART:SM00389 GO:GO:0005634 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:AADN02033814 EMBL:AADN02033815 IPI:IPI00685016
Ensembl:ENSGALT00000034098 ArrayExpress:E1BSF2 Uniprot:E1BSF2
Length = 330
Score = 74 (31.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSRPI 141
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q I
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQGEQI 316
Score = 69 (29.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ ++ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
>UNIPROTKB|A6H796 [details] [associations]
symbol:ISL1 "ISL1 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148
GO:GO:0003215 GO:GO:0060384 GO:GO:0021520 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:DAAA02050419 EMBL:BC146163
IPI:IPI00854388 RefSeq:NP_001092600.1 UniGene:Bt.28168 SMR:A6H796
STRING:A6H796 Ensembl:ENSBTAT00000001638 GeneID:614040
KEGG:bta:614040 InParanoid:A6H796 NextBio:20898906 Uniprot:A6H796
Length = 349
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>UNIPROTKB|P61371 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0003266 "regulation of secondary heart
field cardioblast proliferation" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0008284 "positive regulation
of cell proliferation" evidence=IEA] [GO:0021520 "spinal cord motor
neuron cell fate specification" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021983 "pituitary
gland development" evidence=IEA] [GO:0031103 "axon regeneration"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=ISS] [GO:0010575 "positive
regulation vascular endothelial growth factor production"
evidence=ISS] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=ISS] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=ISS] [GO:0032755 "positive
regulation of interleukin-6 production" evidence=ISS] [GO:0045766
"positive regulation of angiogenesis" evidence=ISS] [GO:0071657
"positive regulation of granulocyte colony-stimulating factor
production" evidence=ISS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0001158 "enhancer sequence-specific DNA binding"
evidence=IDA;NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0021522
"spinal cord motor neuron differentiation" evidence=ISS]
[GO:0048762 "mesenchymal cell differentiation" evidence=ISS]
[GO:0031016 "pancreas development" evidence=ISS] [GO:1901258
"positive regulation of macrophage colony-stimulating factor
production" evidence=ISS] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=ISS] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=ISS] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=ISS] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=ISS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0048936 "peripheral nervous system
neuron axonogenesis" evidence=ISS] [GO:0048665 "neuron fate
specification" evidence=ISS] [GO:0021559 "trigeminal nerve
development" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0048880 "sensory system
development" evidence=ISS] [GO:0060384 "innervation" evidence=ISS]
[GO:0060413 "atrial septum morphogenesis" evidence=ISS] [GO:0060037
"pharyngeal system development" evidence=ISS] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=ISS]
[GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS]
[GO:0003151 "outflow tract morphogenesis" evidence=ISS] [GO:0003148
"outflow tract septum morphogenesis" evidence=ISS] [GO:0003139
"secondary heart field specification" evidence=IMP] [GO:0043425
"bHLH transcription factor binding" evidence=IPI] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=IPI] [GO:0060913 "cardiac cell fate
determination" evidence=IDA] [GO:0071385 "cellular response to
glucocorticoid stimulus" evidence=ISS] [GO:0032024 "positive
regulation of insulin secretion" evidence=IC] [GO:0090074 "negative
regulation of protein homodimerization activity" evidence=ISS]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISS] [GO:0030331 "estrogen receptor
binding" evidence=ISS] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0050728 GO:GO:0008270 GO:GO:0071385 GO:GO:0045665
GO:GO:0043524 GO:GO:0032755 GO:GO:0010575 GO:GO:0032024
GO:GO:0003700 GO:GO:0045766 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0021522
GO:GO:0060037 GO:GO:0090090 GO:GO:0032731 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0030331 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0048665 GO:GO:0032729
GO:GO:0032760 GO:GO:0016922 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0048762 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0032730 GO:GO:0032735 GO:GO:0071657
GO:GO:0060413 GO:GO:0033147 GO:GO:0003266 eggNOG:COG5576
GO:GO:0003148 GO:GO:0003215 GO:GO:0060384 GO:GO:0021520
GO:GO:0032725 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
EMBL:S70721 EMBL:U07559 EMBL:BC031213 IPI:IPI00025071 PIR:I53277
RefSeq:NP_002193.2 UniGene:Hs.505 ProteinModelPortal:P61371
SMR:P61371 IntAct:P61371 STRING:P61371 PhosphoSite:P61371
DMDM:47606423 PRIDE:P61371 DNASU:3670 Ensembl:ENST00000230658
GeneID:3670 KEGG:hsa:3670 UCSC:uc003jor.3 GeneCards:GC05P050714
HGNC:HGNC:6132 MIM:600366 neXtProt:NX_P61371 PharmGKB:PA29932
InParanoid:P61371 PhylomeDB:P61371 GenomeRNAi:3670 NextBio:14363
ArrayExpress:P61371 Bgee:P61371 CleanEx:HS_ISL1
Genevestigator:P61371 GermOnline:ENSG00000016082 GO:GO:0060913
GO:GO:0060379 GO:GO:0090074 GO:GO:0048880 GO:GO:0021524
Uniprot:P61371
Length = 349
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>MGI|MGI:101791 [details] [associations]
symbol:Isl1 "ISL1 transcription factor, LIM/homeodomain"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0001102 "RNA polymerase II activating transcription factor
binding" evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO;IDA] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=ISO] [GO:0001755 "neural
crest cell migration" evidence=IGI] [GO:0003007 "heart
morphogenesis" evidence=IGI] [GO:0003139 "secondary heart field
specification" evidence=ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IGI] [GO:0003151 "outflow tract
morphogenesis" evidence=IGI] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IGI] [GO:0003215 "cardiac right ventricle
morphogenesis" evidence=IGI] [GO:0003266 "regulation of secondary
heart field cardioblast proliferation" evidence=IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0010575 "positive regulation vascular
endothelial growth factor production" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IGI] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021524 "visceral motor neuron
differentiation" evidence=IGI] [GO:0021559 "trigeminal nerve
development" evidence=IMP] [GO:0021983 "pituitary gland
development" evidence=IMP] [GO:0030182 "neuron differentiation"
evidence=IGI;IMP] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0031016 "pancreas development" evidence=IMP]
[GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP]
[GO:0032024 "positive regulation of insulin secretion"
evidence=ISO] [GO:0032725 "positive regulation of granulocyte
macrophage colony-stimulating factor production" evidence=IDA]
[GO:0032729 "positive regulation of interferon-gamma production"
evidence=IDA] [GO:0032730 "positive regulation of interleukin-1
alpha production" evidence=IDA] [GO:0032731 "positive regulation of
interleukin-1 beta production" evidence=IDA] [GO:0032735 "positive
regulation of interleukin-12 production" evidence=IDA] [GO:0032755
"positive regulation of interleukin-6 production" evidence=IDA]
[GO:0032760 "positive regulation of tumor necrosis factor
production" evidence=IDA] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0042517 "positive regulation of tyrosine phosphorylation of
Stat3 protein" evidence=IDA] [GO:0043388 "positive regulation of
DNA binding" evidence=IDA] [GO:0043425 "bHLH transcription factor
binding" evidence=ISO] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043565 "sequence-specific DNA
binding" evidence=ISO] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IGI] [GO:0045766 "positive regulation of
angiogenesis" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter"
evidence=ISO;IGI;IDA;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0048663 "neuron fate commitment" evidence=IGI]
[GO:0048665 "neuron fate specification" evidence=IMP] [GO:0048762
"mesenchymal cell differentiation" evidence=IMP] [GO:0048880
"sensory system development" evidence=IMP] [GO:0048936 "peripheral
nervous system neuron axonogenesis" evidence=IMP] [GO:0050728
"negative regulation of inflammatory response" evidence=IMP]
[GO:0055010 "ventricular cardiac muscle tissue morphogenesis"
evidence=IGI] [GO:0060037 "pharyngeal system development"
evidence=IGI] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IMP] [GO:0060384 "innervation"
evidence=IMP] [GO:0060413 "atrial septum morphogenesis"
evidence=IGI] [GO:0060913 "cardiac cell fate determination"
evidence=ISO;IMP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IDA] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=ISO] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IGI] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:101791 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0001755 GO:GO:0050728
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0032755
GO:GO:0010575 GO:GO:0032024 GO:GO:0003700 GO:GO:0045766
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0032731
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0021559
GO:GO:0001158 GO:GO:0042517 GO:GO:0032729 GO:GO:0032760
GeneTree:ENSGT00700000104050 GO:GO:0031103 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0032730 GO:GO:0032735 GO:GO:0071657 GO:GO:0060413
GO:GO:0003266 eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 GO:GO:0032725 CTD:3670
HOVERGEN:HBG004671 KO:K09370 HOGENOM:HOG000236304 OMA:TDMGDMG
OrthoDB:EOG4G4GQR GO:GO:0048936 GO:GO:0060913 GO:GO:0060379
GO:GO:0048880 GO:GO:0021524 EMBL:AJ132765 EMBL:AB104633
IPI:IPI00121604 IPI:IPI00415262 RefSeq:NP_067434.3 UniGene:Mm.42242
PDB:2RGT PDBsum:2RGT ProteinModelPortal:P61372 SMR:P61372
MINT:MINT-4594016 STRING:P61372 PhosphoSite:P61372 PRIDE:P61372
Ensembl:ENSMUST00000036060 Ensembl:ENSMUST00000176044 GeneID:16392
KEGG:mmu:16392 UCSC:uc007ryf.2 InParanoid:P61372
EvolutionaryTrace:P61372 NextBio:289537 Bgee:P61372 CleanEx:MM_ISL1
Genevestigator:P61372 GermOnline:ENSMUSG00000042258 Uniprot:P61372
Length = 349
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>RGD|61957 [details] [associations]
symbol:Isl1 "ISL LIM homeobox 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA;ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA;ISO] [GO:0001158 "enhancer
sequence-specific DNA binding" evidence=IEA;ISO] [GO:0001755 "neural
crest cell migration" evidence=IEA;ISO] [GO:0003007 "heart
morphogenesis" evidence=ISO] [GO:0003139 "secondary heart field
specification" evidence=IEA;ISO] [GO:0003148 "outflow tract septum
morphogenesis" evidence=IEA;ISO] [GO:0003151 "outflow tract
morphogenesis" evidence=ISO] [GO:0003203 "endocardial cushion
morphogenesis" evidence=IEA;ISO] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA;ISO] [GO:0003266 "regulation
of secondary heart field cardioblast proliferation"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=IEA;ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0007507 "heart development"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA;ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010575 "positive regulation vascular endothelial
growth factor production" evidence=IEA;ISO] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IDA;IPI]
[GO:0021520 "spinal cord motor neuron cell fate specification"
evidence=IEA;ISO] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=ISO] [GO:0021524 "visceral motor neuron
differentiation" evidence=IEA;ISO] [GO:0021559 "trigeminal nerve
development" evidence=IEA;ISO] [GO:0021983 "pituitary gland
development" evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0031016 "pancreas development" evidence=IEA;ISO] [GO:0031103
"axon regeneration" evidence=IEP] [GO:0031290 "retinal ganglion cell
axon guidance" evidence=IEA;ISO] [GO:0032024 "positive regulation of
insulin secretion" evidence=IMP] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA;ISO] [GO:0032729 "positive regulation of
interferon-gamma production" evidence=IEA;ISO] [GO:0032730 "positive
regulation of interleukin-1 alpha production" evidence=IEA;ISO]
[GO:0032731 "positive regulation of interleukin-1 beta production"
evidence=IEA;ISO] [GO:0032735 "positive regulation of interleukin-12
production" evidence=IEA;ISO] [GO:0032755 "positive regulation of
interleukin-6 production" evidence=IEA;ISO] [GO:0032760 "positive
regulation of tumor necrosis factor production" evidence=IEA;ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IDA] [GO:0042517 "positive regulation of
tyrosine phosphorylation of Stat3 protein" evidence=IEA;ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA;ISO]
[GO:0043425 "bHLH transcription factor binding" evidence=IEA;ISO]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0045665 "negative regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045766 "positive regulation
of angiogenesis" evidence=IEA;ISO] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0048663 "neuron fate commitment" evidence=ISO] [GO:0048665
"neuron fate specification" evidence=ISO] [GO:0048762 "mesenchymal
cell differentiation" evidence=ISO] [GO:0048880 "sensory system
development" evidence=IEA;ISO] [GO:0048936 "peripheral nervous
system neuron axonogenesis" evidence=IEA;ISO] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA;ISO] [GO:0055010
"ventricular cardiac muscle tissue morphogenesis" evidence=IEA;ISO]
[GO:0060037 "pharyngeal system development" evidence=IEA;ISO]
[GO:0060379 "cardiac muscle cell myoblast differentiation"
evidence=IEA;ISO] [GO:0060384 "innervation" evidence=IEA;ISO]
[GO:0060413 "atrial septum morphogenesis" evidence=IEA;ISO]
[GO:0060913 "cardiac cell fate determination" evidence=IEA;ISO]
[GO:0071385 "cellular response to glucocorticoid stimulus"
evidence=IEP] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA;ISO] [GO:0090074
"negative regulation of protein homodimerization activity"
evidence=IDA] [GO:0090090 "negative regulation of canonical Wnt
receptor signaling pathway" evidence=IEA;ISO] [GO:1901258 "positive
regulation of macrophage colony-stimulating factor production"
evidence=ISO] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 RGD:61957 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0001755 GO:GO:0043565 GO:GO:0008270 GO:GO:0071385
GO:GO:0045944 GO:GO:0045665 GO:GO:0043524 GO:GO:0032024
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000122 Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090
GO:GO:0031016 GO:GO:0021983 GO:GO:0001105 GO:GO:0030331
GO:GO:0021559 GO:GO:0001158 GO:GO:0042517
GeneTree:ENSGT00700000104050 GO:GO:0016922 GO:GO:0031103
GO:GO:0055010 GO:GO:0003203 GO:GO:0003139 GO:GO:0031290
GO:GO:0043388 GO:GO:0060413 GO:GO:0033147 GO:GO:0003266
eggNOG:COG5576 GO:GO:0003148 GO:GO:0003215 GO:GO:0060384
GO:GO:0021520 CTD:3670 HOVERGEN:HBG004671 KO:K09370
HOGENOM:HOG000236304 OMA:TDMGDMG OrthoDB:EOG4G4GQR GO:GO:0048936
GO:GO:0060913 GO:GO:0060379 GO:GO:0090074 GO:GO:0048880
GO:GO:0021524 EMBL:S69329 EMBL:AY557632 EMBL:X53258 IPI:IPI00201439
IPI:IPI00417237 PIR:I67417 RefSeq:NP_059035.3 UniGene:Rn.36202
ProteinModelPortal:P61374 SMR:P61374 STRING:P61374
PhosphoSite:P61374 PRIDE:P61374 Ensembl:ENSRNOT00000017305
GeneID:64444 KEGG:rno:64444 InParanoid:P61374 NextBio:613174
Genevestigator:P61374 GermOnline:ENSRNOG00000012556 Uniprot:P61374
Length = 349
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 72 (30.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>UNIPROTKB|F1PP21 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10
GeneTree:ENSGT00700000104050 OMA:TDMGDMG EMBL:AAEX03003122
Ensembl:ENSCAFT00000029303 Uniprot:F1PP21
Length = 360
Score = 72 (30.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 193 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 72 (30.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 84 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 143
Query: 62 E 62
+
Sbjct: 144 D 144
>UNIPROTKB|F1SMF7 [details] [associations]
symbol:ISL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0071657 "positive regulation of granulocyte
colony-stimulating factor production" evidence=IEA] [GO:0060913
"cardiac cell fate determination" evidence=IEA] [GO:0060413 "atrial
septum morphogenesis" evidence=IEA] [GO:0060384 "innervation"
evidence=IEA] [GO:0060379 "cardiac muscle cell myoblast
differentiation" evidence=IEA] [GO:0060037 "pharyngeal system
development" evidence=IEA] [GO:0055010 "ventricular cardiac muscle
tissue morphogenesis" evidence=IEA] [GO:0050728 "negative
regulation of inflammatory response" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IEA]
[GO:0048880 "sensory system development" evidence=IEA] [GO:0045766
"positive regulation of angiogenesis" evidence=IEA] [GO:0045665
"negative regulation of neuron differentiation" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043425 "bHLH transcription factor binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0042517 "positive regulation of tyrosine
phosphorylation of Stat3 protein" evidence=IEA] [GO:0032760
"positive regulation of tumor necrosis factor production"
evidence=IEA] [GO:0032755 "positive regulation of interleukin-6
production" evidence=IEA] [GO:0032735 "positive regulation of
interleukin-12 production" evidence=IEA] [GO:0032731 "positive
regulation of interleukin-1 beta production" evidence=IEA]
[GO:0032730 "positive regulation of interleukin-1 alpha production"
evidence=IEA] [GO:0032729 "positive regulation of interferon-gamma
production" evidence=IEA] [GO:0032725 "positive regulation of
granulocyte macrophage colony-stimulating factor production"
evidence=IEA] [GO:0031290 "retinal ganglion cell axon guidance"
evidence=IEA] [GO:0031016 "pancreas development" evidence=IEA]
[GO:0021983 "pituitary gland development" evidence=IEA] [GO:0021559
"trigeminal nerve development" evidence=IEA] [GO:0021524 "visceral
motor neuron differentiation" evidence=IEA] [GO:0021520 "spinal
cord motor neuron cell fate specification" evidence=IEA]
[GO:0010575 "positive regulation vascular endothelial growth factor
production" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003266 "regulation of secondary heart field
cardioblast proliferation" evidence=IEA] [GO:0003215 "cardiac right
ventricle morphogenesis" evidence=IEA] [GO:0003203 "endocardial
cushion morphogenesis" evidence=IEA] [GO:0003148 "outflow tract
septum morphogenesis" evidence=IEA] [GO:0003139 "secondary heart
field specification" evidence=IEA] [GO:0001755 "neural crest cell
migration" evidence=IEA] [GO:0001158 "enhancer sequence-specific
DNA binding" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0001102 "RNA
polymerase II activating transcription factor binding"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0001755
GO:GO:0008270 GO:GO:0045665 GO:GO:0043524 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000122
Gene3D:2.10.110.10 GO:GO:0060037 GO:GO:0090090 GO:GO:0031016
GO:GO:0021983 GO:GO:0001105 GO:GO:0021559 GO:GO:0001158
GO:GO:0042517 GeneTree:ENSGT00700000104050 GO:GO:0055010
GO:GO:0003203 GO:GO:0003139 GO:GO:0031290 GO:GO:0043388
GO:GO:0060413 GO:GO:0003266 GO:GO:0003148 GO:GO:0003215
GO:GO:0060384 GO:GO:0021520 OMA:TDMGDMG GO:GO:0048936 GO:GO:0060913
GO:GO:0060379 GO:GO:0048880 GO:GO:0021524 EMBL:CU915536
Ensembl:ENSSSCT00000018387 Uniprot:F1SMF7
Length = 361
Score = 72 (30.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 195 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 238
Score = 72 (30.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 86 LYGIKCAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 145
Query: 62 E 62
+
Sbjct: 146 D 146
>WB|WBGene00003167 [details] [associations]
symbol:mec-3 species:6239 "Caenorhabditis elegans"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016358 "dendrite development"
evidence=IMP] [GO:0007638 "mechanosensory behavior" evidence=IMP]
[GO:0009612 "response to mechanical stimulus" evidence=IMP]
[GO:0030182 "neuron differentiation" evidence=IMP] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=IPI] [GO:0001190 "RNA polymerase II transcription factor
binding transcription factor activity involved in positive
regulation of transcription" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0016358 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0001190 GO:GO:0000977
GeneTree:ENSGT00700000104050 GO:GO:0007638 eggNOG:NOG257130
EMBL:L02877 EMBL:M20244 EMBL:Z81054 PIR:S28390 PIR:T20458
RefSeq:NP_001023111.1 RefSeq:NP_001023112.1 UniGene:Cel.19754
ProteinModelPortal:P09088 SMR:P09088 STRING:P09088 PaxDb:P09088
EnsemblMetazoa:F01D4.6a GeneID:177938 KEGG:cel:CELE_F01D4.6
UCSC:F01D4.6a CTD:177938 WormBase:F01D4.6a WormBase:F01D4.6b
HOGENOM:HOG000064530 InParanoid:P09088 KO:K09376 OMA:VIDSIGV
NextBio:899038 ArrayExpress:P09088 Uniprot:P09088
Length = 321
Score = 87 (35.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 89 RRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
RRGP RT + Q F +PKP + R LA +TGLS+R++Q
Sbjct: 217 RRGP---RTTIKQNQLDVLNEMFSNTPKPSKHARAKLALETGLSMRVIQ 262
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/83 (21%), Positives = 35/83 (42%)
Query: 6 KCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKE- 64
KC C+E++ D + + +DN E+ K G+++C Y K+
Sbjct: 28 KCNCCNEQIY-DRYIYR-MDNRSYHENCVKCTI-CESPLAEKCFWKNGRIYCSQHYYKDH 84
Query: 65 -VEMLQGYAQGI-PFDLITSSKS 85
+ G +G+ P D++ K+
Sbjct: 85 SIHRCAGCKKGVSPTDMVYKLKA 107
Score = 46 (21.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXX-GSRLQRGEQFVIKQGQLF--CRPD 60
+ +C GC + + P ++V K G L GEQ ++ + C
Sbjct: 86 IHRCAGCKKGVSPTDMVYKLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSCMSH 145
Query: 61 YEKEVE 66
Y +++
Sbjct: 146 YPPQMD 151
>ZFIN|ZDB-GENE-980526-112 [details] [associations]
symbol:isl1 "islet1" species:7955 "Danio rerio"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0048936
"peripheral nervous system neuron axonogenesis" evidence=IMP]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048665 "neuron fate specification" evidence=IGI;IMP]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0055011 "atrial cardiac muscle cell differentiation"
evidence=IMP] [GO:0055012 "ventricular cardiac muscle cell
differentiation" evidence=IMP] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389
ZFIN:ZDB-GENE-980526-112 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
Gene3D:2.10.110.10 GO:GO:0021522 GO:GO:0048665
GeneTree:ENSGT00700000104050 GO:GO:0031017 eggNOG:COG5576 CTD:3670
HOVERGEN:HBG004671 KO:K09370 EMBL:D21135 EMBL:AL954694
EMBL:BC060892 IPI:IPI00487340 PIR:I51739 RefSeq:NP_571037.1
UniGene:Dr.75106 ProteinModelPortal:P53405 SMR:P53405 STRING:P53405
Ensembl:ENSDART00000010896 GeneID:30147 KEGG:dre:30147
HOGENOM:HOG000236304 InParanoid:A2AWM5 OMA:TDMGDMG
OrthoDB:EOG4G4GQR NextBio:20806622 Bgee:P53405 GO:GO:0055011
GO:GO:0048936 Uniprot:P53405
Length = 349
Score = 73 (30.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 69 (29.3 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC C+ ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>UNIPROTKB|Q2KIA3 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
EMBL:BC112712 IPI:IPI00722914 RefSeq:NP_001039802.1
UniGene:Bt.97510 ProteinModelPortal:Q2KIA3 SMR:Q2KIA3
Ensembl:ENSBTAT00000043044 GeneID:532870 KEGG:bta:532870 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
InParanoid:Q2KIA3 OMA:HTEIGIY OrthoDB:EOG405S2K NextBio:20875832
Uniprot:Q2KIA3
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>UNIPROTKB|J9P4K0 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866536.1
ProteinModelPortal:J9P4K0 Ensembl:ENSCAFT00000048736 Uniprot:J9P4K0
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>UNIPROTKB|Q8TAP4 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 EMBL:CH471094 CTD:55885
eggNOG:NOG316748 HOGENOM:HOG000232175 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:AB044745 EMBL:AB044746
EMBL:AK095595 EMBL:AK294909 EMBL:AC007529 EMBL:AC007552
EMBL:BC026311 EMBL:BC050085 IPI:IPI00744307 RefSeq:NP_001001395.1
RefSeq:NP_001230538.1 RefSeq:NP_001230539.1 RefSeq:NP_001230540.1
RefSeq:NP_001230542.1 RefSeq:NP_061110.2 UniGene:Hs.504908
ProteinModelPortal:Q8TAP4 SMR:Q8TAP4 IntAct:Q8TAP4
MINT:MINT-2874669 STRING:Q8TAP4 PhosphoSite:Q8TAP4 DMDM:34098603
PRIDE:Q8TAP4 DNASU:55885 Ensembl:ENST00000261169
Ensembl:ENST00000320122 Ensembl:ENST00000354662
Ensembl:ENST00000441439 Ensembl:ENST00000447609
Ensembl:ENST00000534946 Ensembl:ENST00000535535
Ensembl:ENST00000537304 Ensembl:ENST00000540445
Ensembl:ENST00000540848 Ensembl:ENST00000541846 GeneID:55885
KEGG:hsa:55885 UCSC:uc001rdk.2 GeneCards:GC12M016701 HGNC:HGNC:6643
MIM:180386 neXtProt:NX_Q8TAP4 PharmGKB:PA30409 InParanoid:Q8TAP4
PhylomeDB:Q8TAP4 GenomeRNAi:55885 NextBio:61212 ArrayExpress:Q8TAP4
Bgee:Q8TAP4 CleanEx:HS_LMO3 Genevestigator:Q8TAP4
GermOnline:ENSG00000048540 Uniprot:Q8TAP4
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>UNIPROTKB|A9ED84 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 HOVERGEN:HBG054231
OMA:HTEIGIY OrthoDB:EOG405S2K EMBL:CU915363 EMBL:AB304400
RefSeq:NP_001106155.1 UniGene:Ssc.8086 SMR:A9ED84
Ensembl:ENSSSCT00000000642 GeneID:100127154 KEGG:ssc:100127154
eggNOG:NOG315878 Uniprot:A9ED84
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>MGI|MGI:102810 [details] [associations]
symbol:Lmo3 "LIM domain only 3" species:10090 "Mus musculus"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
MGI:MGI:102810 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 GeneTree:ENSGT00680000099670
CTD:55885 eggNOG:NOG316748 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AK034177 EMBL:BC057086 IPI:IPI00406211 RefSeq:NP_997105.1
UniGene:Mm.490545 ProteinModelPortal:Q8BZL8 SMR:Q8BZL8
STRING:Q8BZL8 PhosphoSite:Q8BZL8 PRIDE:Q8BZL8
Ensembl:ENSMUST00000161450 Ensembl:ENSMUST00000162772
Ensembl:ENSMUST00000163024 GeneID:109593 KEGG:mmu:109593
UCSC:uc009enl.1 InParanoid:Q8BZL8 NextBio:362405 Bgee:Q8BZL8
CleanEx:MM_LMO3 Genevestigator:Q8BZL8 GermOnline:ENSMUSG00000030226
Uniprot:Q8BZL8
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>RGD|1561357 [details] [associations]
symbol:RGD1561357 "similar to LIM domain only 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:1561357 GO:GO:0046872 GO:GO:0008270
Gene3D:2.10.110.10 OMA:HTEIGIY IPI:IPI00480651
RefSeq:XP_003749911.1 ProteinModelPortal:F2Z3R1 SMR:F2Z3R1
Ensembl:ENSRNOT00000010623 GeneID:497798 KEGG:rno:497798 CTD:497798
Uniprot:F2Z3R1
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>RGD|621166 [details] [associations]
symbol:Lmo1 "LIM domain only 1" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] Pfam:PF00412 InterPro:IPR001781
PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132 RGD:621166
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:2.10.110.10 eggNOG:NOG316748 HOGENOM:HOG000232175
HOVERGEN:HBG054231 OrthoDB:EOG405S2K EMBL:AF353304 IPI:IPI00197708
UniGene:Rn.25503 ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5
UCSC:RGD:621166 InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>UNIPROTKB|Q99MB5 [details] [associations]
symbol:Lmo3 "LIM domain only protein 3" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 RGD:621166 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:2.10.110.10 eggNOG:NOG316748
HOGENOM:HOG000232175 HOVERGEN:HBG054231 OrthoDB:EOG405S2K
EMBL:AF353304 IPI:IPI00197708 UniGene:Rn.25503
ProteinModelPortal:Q99MB5 SMR:Q99MB5 STRING:Q99MB5 UCSC:RGD:621166
InParanoid:Q99MB5 Genevestigator:Q99MB5
GermOnline:ENSRNOG00000008041 Uniprot:Q99MB5
Length = 145
Score = 92 (37.4 bits), Expect = 0.00047, P = 0.00047
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 135
Query: 67 MLQGYA 72
M +GYA
Sbjct: 136 MKEGYA 141
>UNIPROTKB|Q58CW3 [details] [associations]
symbol:LHX9 "LIM homeobox 9" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OrthoDB:EOG4G4GQK
IPI:IPI00692674 UniGene:Bt.31799 CTD:56956 EMBL:DAAA02043909
EMBL:DAAA02043910 EMBL:BT021834 IPI:IPI00903761
RefSeq:NP_001019715.1 SMR:Q58CW3 Ensembl:ENSBTAT00000017945
GeneID:515012 KEGG:bta:515012 InParanoid:Q58CW3 NextBio:20871620
Uniprot:Q58CW3
Length = 378
Score = 72 (30.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 111 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 170
Query: 64 EVEMLQG 70
+LQG
Sbjct: 171 ---LLQG 174
Score = 71 (30.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 249 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 293
>UNIPROTKB|P50211 [details] [associations]
symbol:ISL1 "Insulin gene enhancer protein ISL-1"
species:9031 "Gallus gallus" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0007275 GO:GO:0005634 GO:GO:0045892
GO:GO:0046872 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:L35567
IPI:IPI00598855 PIR:I50369 RefSeq:NP_990745.1 UniGene:Gga.1507
ProteinModelPortal:P50211 SMR:P50211 GeneID:396383 KEGG:gga:396383
CTD:3670 HOVERGEN:HBG004671 KO:K09370 NextBio:20816425
Uniprot:P50211
Length = 349
Score = 72 (30.4 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 183 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 226
Score = 70 (29.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
LY KC CS ++ VM+ +L G++F +++ LFCR D+
Sbjct: 74 LYGIKCAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADH 133
Query: 62 E 62
+
Sbjct: 134 D 134
>RGD|727956 [details] [associations]
symbol:Lhx9 "LIM homeobox 9" species:10116 "Rattus norvegicus"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0008585 "female gonad development"
evidence=IEA;ISO] [GO:0035262 "gonad morphogenesis"
evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] Pfam:PF00412 InterPro:IPR001356
InterPro:IPR001781 InterPro:IPR009057 InterPro:IPR017970
Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478 PROSITE:PS50023
PROSITE:PS50071 SMART:SM00132 SMART:SM00389 EMBL:AY273890
RGD:727956 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892 GO:GO:0008585
GO:GO:0046872 GO:GO:0008283 GO:GO:0043565 GO:GO:0008270
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584
Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262
HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG HSSP:P61969
CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 72 (30.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 121 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 180
Query: 64 EVEMLQG 70
+LQG
Sbjct: 181 ---LLQG 184
Score = 71 (30.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 259 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303
>UNIPROTKB|Q80W90 [details] [associations]
symbol:Lhx9 "LIM/homeobox protein Lhx9" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 EMBL:AY273890 RGD:727956 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
HSSP:P61969 CTD:56956 EMBL:BC128722 EMBL:AF527619 IPI:IPI00208402
IPI:IPI00327074 RefSeq:NP_852032.1 UniGene:Rn.150335
ProteinModelPortal:Q80W90 SMR:Q80W90 STRING:Q80W90
Ensembl:ENSRNOT00000013873 GeneID:289048 KEGG:rno:289048
UCSC:RGD:727956 InParanoid:Q811Z4 NextBio:629139
ArrayExpress:Q80W90 Genevestigator:Q80W90 Uniprot:Q80W90
Length = 388
Score = 72 (30.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 121 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 180
Query: 64 EVEMLQG 70
+LQG
Sbjct: 181 ---LLQG 184
Score = 71 (30.1 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 259 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 303
>UNIPROTKB|F1NBH3 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 OMA:HTEIGIY EMBL:AADN02006566
EMBL:AADN02006567 EMBL:AADN02006568 IPI:IPI00590236
Ensembl:ENSGALT00000009596 Uniprot:F1NBH3
Length = 147
Score = 92 (37.4 bits), Expect = 0.00052, P = 0.00052
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 79 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 137
Query: 67 MLQGYA 72
M +GYA
Sbjct: 138 MKEGYA 143
>UNIPROTKB|E1BM60 [details] [associations]
symbol:ISL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0045665 "negative
regulation of neuron differentiation" evidence=IEA] [GO:0031290
"retinal ganglion cell axon guidance" evidence=IEA] [GO:0021524
"visceral motor neuron differentiation" evidence=IEA] [GO:0021520
"spinal cord motor neuron cell fate specification" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0046872 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 GeneTree:ENSGT00700000104050
GO:GO:0031290 GO:GO:0021520 GO:GO:0021524 OMA:RHDSAVQ
EMBL:DAAA02052446 IPI:IPI00701951 UniGene:Bt.34422
Ensembl:ENSBTAT00000022147 NextBio:20928153 Uniprot:E1BM60
Length = 359
Score = 72 (30.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 193 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 70 (29.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C +LVM+ D+ +L G++F +++ +L CR D+
Sbjct: 84 LFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
Query: 62 EKEVEMLQGYAQGIP 76
+L+ A G P
Sbjct: 144 GL---LLERAAAGSP 155
>UNIPROTKB|Q96A47 [details] [associations]
symbol:ISL2 "Insulin gene enhancer protein ISL-2"
species:9606 "Homo sapiens" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0021520 "spinal cord motor neuron cell
fate specification" evidence=IEA] [GO:0021524 "visceral motor
neuron differentiation" evidence=IEA] [GO:0031290 "retinal ganglion
cell axon guidance" evidence=IEA] [GO:0045665 "negative regulation
of neuron differentiation" evidence=IEA] [GO:0048935 "peripheral
nervous system neuron development" evidence=TAS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0048666 "neuron development" evidence=TAS] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0043565
GO:GO:0008270 GO:GO:0045665 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 Gene3D:2.10.110.10 EMBL:CH471136 GO:GO:0031290
GO:GO:0048935 eggNOG:COG5576 GO:GO:0021520 HOVERGEN:HBG004671
KO:K09370 HOGENOM:HOG000236304 OrthoDB:EOG4G4GQR GO:GO:0021524
OMA:RHDSAVQ EMBL:AK001022 EMBL:BC011967 EMBL:BC012136
IPI:IPI00059240 RefSeq:NP_665804.1 UniGene:Hs.444677
ProteinModelPortal:Q96A47 SMR:Q96A47 STRING:Q96A47
PhosphoSite:Q96A47 DMDM:20978495 PRIDE:Q96A47 DNASU:64843
Ensembl:ENST00000290759 GeneID:64843 KEGG:hsa:64843 UCSC:uc002bbw.1
CTD:64843 GeneCards:GC15P076629 HGNC:HGNC:18524 MIM:609481
neXtProt:NX_Q96A47 PharmGKB:PA38566 InParanoid:Q96A47
PhylomeDB:Q96A47 GenomeRNAi:64843 NextBio:66950 Bgee:Q96A47
CleanEx:HS_ISL2 Genevestigator:Q96A47 GermOnline:ENSG00000159556
Uniprot:Q96A47
Length = 359
Score = 72 (30.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 193 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 236
Score = 70 (29.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 19/75 (25%), Positives = 33/75 (44%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDY 61
L+ KC C +LVM+ D+ +L G++F +++ +L CR D+
Sbjct: 84 LFGIKCAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
Query: 62 EKEVEMLQGYAQGIP 76
+L+ A G P
Sbjct: 144 GL---LLERAAAGSP 155
>UNIPROTKB|A0JNI8 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9913 "Bos
taurus" [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0008045 "motor neuron axon guidance"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045 eggNOG:NOG240987
GeneTree:ENSGT00680000099670 GO:GO:0035262 HOGENOM:HOG000034022
HOVERGEN:HBG006262 EMBL:BT026326 EMBL:BC126704 IPI:IPI00692674
IPI:IPI00839239 UniGene:Bt.31799 ProteinModelPortal:A0JNI8
SMR:A0JNI8 Ensembl:ENSBTAT00000043591 Ensembl:ENSBTAT00000054943
InParanoid:Q0V893 OMA:AAMLFHG Uniprot:A0JNI8
Length = 397
Score = 72 (30.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
>UNIPROTKB|E2R2S5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262
"gonad morphogenesis" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0008585 GO:GO:0046872
GO:GO:0008283 GO:GO:0043565 GO:GO:0008270 GO:GO:0003700
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 KO:K09373 GO:GO:0035262 OMA:AAMLFHG
CTD:56956 EMBL:AAEX03005042 RefSeq:XP_848787.1 SMR:E2R2S5
Ensembl:ENSCAFT00000018021 GeneID:490257 KEGG:cfa:490257
NextBio:20863313 Uniprot:E2R2S5
Length = 397
Score = 72 (30.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
>UNIPROTKB|Q9NQ69 [details] [associations]
symbol:LHX9 "LIM/homeobox protein Lhx9" species:9606 "Homo
sapiens" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0008585
"female gonad development" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008045 "motor neuron axon guidance" evidence=ISS] [GO:0003714
"transcription corepressor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISS]
Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0008585 GO:GO:0046872 GO:GO:0008283 GO:GO:0043565
GO:GO:0008270 EMBL:CH471067 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 KO:K09373 GO:GO:0035262 HOVERGEN:HBG006262
OrthoDB:EOG4G4GQK OMA:AAMLFHG CTD:56956 EMBL:AJ277915 EMBL:AJ277916
EMBL:AJ277917 EMBL:AJ277918 EMBL:AJ277919 EMBL:AJ277920
EMBL:AJ296272 EMBL:AY273889 EMBL:AL590115 EMBL:BC131622
IPI:IPI00328729 IPI:IPI00396103 IPI:IPI00642345 IPI:IPI00642361
RefSeq:NP_001014434.1 RefSeq:NP_064589.2 UniGene:Hs.442578
UniGene:Hs.706475 PDB:2DMQ PDBsum:2DMQ ProteinModelPortal:Q9NQ69
SMR:Q9NQ69 STRING:Q9NQ69 PhosphoSite:Q9NQ69 DMDM:224471883
PRIDE:Q9NQ69 Ensembl:ENST00000337020 Ensembl:ENST00000367387
Ensembl:ENST00000367390 Ensembl:ENST00000367391 GeneID:56956
KEGG:hsa:56956 UCSC:uc001gui.1 UCSC:uc001guk.1
GeneCards:GC01P197881 HGNC:HGNC:14222 HPA:HPA009695 MIM:606066
neXtProt:NX_Q9NQ69 PharmGKB:PA30368 PhylomeDB:Q9NQ69
EvolutionaryTrace:Q9NQ69 GenomeRNAi:56956 NextBio:62575
ArrayExpress:Q9NQ69 Bgee:Q9NQ69 CleanEx:HS_LHX9
Genevestigator:Q9NQ69 GermOnline:ENSG00000143355 Uniprot:Q9NQ69
Length = 397
Score = 72 (30.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
>UNIPROTKB|F1S5F5 [details] [associations]
symbol:LHX9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0035262 "gonad
morphogenesis" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0008283 "cell proliferation" evidence=IEA] [GO:0043565
"sequence-specific DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] Pfam:PF00412
InterPro:IPR001356 InterPro:IPR001781 InterPro:IPR009057
InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027 PROSITE:PS00478
PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132 SMART:SM00389
GO:GO:0005634 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 GO:GO:0035262 OMA:AAMLFHG
EMBL:FP325281 Ensembl:ENSSSCT00000011930 Uniprot:F1S5F5
Length = 397
Score = 72 (30.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
>MGI|MGI:1316721 [details] [associations]
symbol:Lhx9 "LIM homeobox protein 9" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0008585 "female gonad development" evidence=IMP] [GO:0035262
"gonad morphogenesis" evidence=IMP] [GO:0043565 "sequence-specific
DNA binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00412 InterPro:IPR001356 InterPro:IPR001781
InterPro:IPR009057 InterPro:IPR017970 Pfam:PF00046 PROSITE:PS00027
PROSITE:PS00478 PROSITE:PS50023 PROSITE:PS50071 SMART:SM00132
SMART:SM00389 MGI:MGI:1316721 GO:GO:0005634 GO:GO:0003714
GO:GO:0045892 GO:GO:0008585 GO:GO:0046872 GO:GO:0008283
GO:GO:0043565 GO:GO:0008270 GO:GO:0003700 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0008584 Gene3D:2.10.110.10 GO:GO:0008045
eggNOG:NOG240987 GeneTree:ENSGT00680000099670 KO:K09373
GO:GO:0035262 HOGENOM:HOG000034022 HOVERGEN:HBG006262 OMA:AAMLFHG
CTD:56956 EMBL:AJ243851 EMBL:AJ243852 EMBL:AJ243853 EMBL:AJ243854
EMBL:AJ243855 EMBL:AJ243856 EMBL:AJ243857 EMBL:AC154398
EMBL:BC072623 EMBL:AF134761 EMBL:AF113518 IPI:IPI00124662
IPI:IPI00227842 IPI:IPI00626920 IPI:IPI00830796
RefSeq:NP_001020736.1 RefSeq:NP_001036042.1 RefSeq:NP_034844.1
UniGene:Mm.250732 ProteinModelPortal:Q9WUH2 SMR:Q9WUH2
IntAct:Q9WUH2 MINT:MINT-1340747 STRING:Q9WUH2 PRIDE:Q9WUH2
Ensembl:ENSMUST00000019374 Ensembl:ENSMUST00000046870
Ensembl:ENSMUST00000093486 Ensembl:ENSMUST00000112026
Ensembl:ENSMUST00000112030 GeneID:16876 KEGG:mmu:16876
UCSC:uc007cvr.1 UCSC:uc007cvs.1 UCSC:uc007cvu.1 ChiTaRS:LHX9
NextBio:290864 Bgee:Q9WUH2 CleanEx:MM_LHX9 Genevestigator:Q9WUH2
GermOnline:ENSMUSG00000019230 Uniprot:Q9WUH2
Length = 397
Score = 72 (30.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEK 63
V++C C + E+VM+ D+ L G+ F +K ++CR +E
Sbjct: 130 VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET 189
Query: 64 EVEMLQG 70
+LQG
Sbjct: 190 ---LLQG 193
Score = 71 (30.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
KR RT Q R K+ F I+ P K + LA+ TGL+ R++Q
Sbjct: 268 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 312
>UNIPROTKB|E2RHK8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 EMBL:AAEX03015233
RefSeq:XP_003433617.1 ProteinModelPortal:E2RHK8
Ensembl:ENSCAFT00000020038 GeneID:486662 KEGG:cfa:486662
Uniprot:E2RHK8
Length = 156
Score = 92 (37.4 bits), Expect = 0.00073, P = 0.00073
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 88 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 146
Query: 67 MLQGYA 72
M +GYA
Sbjct: 147 MKEGYA 152
>UNIPROTKB|J9NZN8 [details] [associations]
symbol:LMO3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
Pfam:PF00412 InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023
SMART:SM00132 GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10
GeneTree:ENSGT00680000099670 CTD:55885 OMA:HTEIGIY
EMBL:AAEX03015233 GeneID:486662 KEGG:cfa:486662 RefSeq:XP_866550.2
Ensembl:ENSCAFT00000044444 Uniprot:J9NZN8
Length = 163
Score = 92 (37.4 bits), Expect = 0.00090, P = 0.00090
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 153
Query: 67 MLQGYA 72
M +GYA
Sbjct: 154 MKEGYA 159
>UNIPROTKB|B4DG90 [details] [associations]
symbol:LMO3 "LIM domain only protein 3" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] Pfam:PF00412
InterPro:IPR001781 PROSITE:PS00478 PROSITE:PS50023 SMART:SM00132
GO:GO:0046872 GO:GO:0008270 Gene3D:2.10.110.10 CTD:55885
HOGENOM:HOG000232175 HOVERGEN:HBG054231 EMBL:AC007529 EMBL:AC007552
RefSeq:NP_001001395.1 UniGene:Hs.504908 DNASU:55885 GeneID:55885
KEGG:hsa:55885 HGNC:HGNC:6643 GenomeRNAi:55885 NextBio:61212
EMBL:AK294474 EMBL:AK316021 IPI:IPI00910185 RefSeq:NP_001230541.1
SMR:B4DG90 STRING:B4DG90 Ensembl:ENST00000541295 UCSC:uc010shy.2
Uniprot:B4DG90
Length = 163
Score = 92 (37.4 bits), Expect = 0.00090, P = 0.00090
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 7 CLGCSEKLGPDELVMKTLDNXXXXXXXXXXXXGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
C CS+ + E+VM+ DN R G++F +K + C+ DYE+ +
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGL- 153
Query: 67 MLQGYA 72
M +GYA
Sbjct: 154 MKEGYA 159
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 143 131 0.00091 102 3 11 22 0.39 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 145
No. of states in DFA: 511 (54 KB)
Total size of DFA: 112 KB (2077 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.99u 0.08s 12.07t Elapsed: 00:00:19
Total cpu time: 12.01u 0.08s 12.09t Elapsed: 00:00:19
Start: Thu Aug 15 11:31:02 2013 End: Thu Aug 15 11:31:21 2013
WARNINGS ISSUED: 1