RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15437
(143 letters)
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 45.8 bits (108), Expect = 5e-08
Identities = 15/57 (26%), Positives = 22/57 (38%)
Query: 81 TSSKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
T+ S G P RT TT+Q + F + R R +A L+ V+
Sbjct: 16 TAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 44.4 bits (105), Expect = 1e-07
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 83 SKSHDGRRGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+ + R ++ R T Q + F + R R +AR L+ R V+
Sbjct: 4 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 31
Score = 42.8 bits (101), Expect = 2e-07
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 CLGCSEKLGPDELVMKTLDNVFHVQCF 33
C C + + ELVM+ NV+H++CF
Sbjct: 5 CSACGQSIPASELVMRAQGNVYHLKCF 31
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 42.9 bits (101), Expect = 3e-07
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+R RT T +Q A + FE + P RE LA L +Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 41.7 bits (98), Expect = 6e-07
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
K + + Q + FE R+ LA+ LS R V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 41.8 bits (98), Expect = 8e-07
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT+L +Q + + +P+P ++E L TGLS R+++
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 41.0 bits (96), Expect = 1e-06
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 95 PRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
PR + T QRR A F+ + +P ++++ +++ GL + V
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 40.9 bits (96), Expect = 1e-06
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 93 KRPRTILTTQQRRAFKASFEIS---PKPCRKVREGLARDTGLSVRIVQ 137
K R +L ++ P P ++ +A T L++ V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 40.6 bits (95), Expect = 2e-06
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
RPRT +++Q K F + + R+ L+ + GL+ ++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 39.5 bits (92), Expect = 6e-06
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+R RT + Q + +FE + P RE LA+ T L+ +Q
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 39.2 bits (91), Expect = 6e-06
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+R RT T+QQ + +A+F+ + P RE +A T L+ V+
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 39.6 bits (92), Expect = 8e-06
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 93 KRPRTILTTQQRRAFKASFE---ISPKPCRKVREGLARDTGLSVRIVQ 137
+R R Q F +P P + +E LA+ G++V V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 39.1 bits (91), Expect = 1e-05
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 92 PKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
P+R RT T+ Q + F L+ L V+
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 38.7 bits (90), Expect = 1e-05
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++ R + Q R + + + + R ++ T LS R +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 39.2 bits (91), Expect = 1e-05
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 81 TSSKSHDGRRGPKRPRTILTTQQRRAFKASFE----ISPKPCRKVREGLARDTGLSVRIV 136
+ S KR RT T +Q+ A E K E +TG+ +++
Sbjct: 6 SGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVL 65
Query: 137 Q 137
+
Sbjct: 66 K 66
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 37.6 bits (87), Expect = 3e-05
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+ RT ++ + A + F KP + +A + L +V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 37.4 bits (87), Expect = 3e-05
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R T Q + F + R+ R +A L+ R ++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 37.7 bits (87), Expect = 3e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
+ KR RT + + R + + F PKP + +A GL +V+
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 37.2 bits (86), Expect = 3e-05
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
RT + T R A + SF + KP + +A + +++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 37.2 bits (86), Expect = 4e-05
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++ ++ Q R + F K +E +A+ G++ V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 37.0 bits (85), Expect = 5e-05
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 92 PKRPRTILTTQQRRAFKASF-EISPKPCRKVREGLARDTGLSVRIVQ 137
R RT ++ + ++ ++ P ++ L+ L +
Sbjct: 7 GPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 36.4 bits (84), Expect = 8e-05
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++ R + + Q + F+ RE LA L+ V+
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 36.4 bits (84), Expect = 8e-05
Identities = 11/44 (25%), Positives = 14/44 (31%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
R RT T Q + F R R LA L ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 36.6 bits (84), Expect = 1e-04
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 90 RGPKRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++ R + T Q + F RE LA L+ V+
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 36.6 bits (84), Expect = 1e-04
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 94 RPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSR 139
R + ++ F + P RE +A ++ +
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKK 47
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 35.3 bits (81), Expect = 2e-04
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 93 KRPRTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQ 137
++PRT TT Q A + F R + L+ V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 33.2 bits (76), Expect = 0.001
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 100 TTQQRRAFKASF-EISPKPCRKVREGLARDTGLSVRIVQ 137
T Q + F I+ P K EGL++ VR +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 32.0 bits (73), Expect = 0.003
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 94 RPRTILTTQQRRAFKASFE-ISPKPCRKVREGLARDTGLSVRIVQ 137
+ + + + F ++ P K +GL++ SVR +Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 32.1 bits (73), Expect = 0.003
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 93 KRPRTILTTQQRRAFKASFE---ISPKPCRKVREGLARDTGLSVRIVQ 137
+ R T + R ++ F +P K E L ++T LS ++
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 31.9 bits (72), Expect = 0.004
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 93 KRPRTILTTQQRRAFKASFEISPK-PCRKVREGLARDTGLSVRIVQ 137
+T Q + +F K P +A + GL+ Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 30.5 bits (68), Expect = 0.015
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 96 RTILTTQQRRAFKASFEISPKPCRKVREGLARDTGLSVRIVQSR 139
R ++ ++E P ++ RE L + + I +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGV 44
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 29.2 bits (66), Expect = 0.019
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCF 33
++ KC GC+ + + + +D V+H +CF
Sbjct: 6 MFSPKCGGCNRPVLEN--YLSAMDTVWHPECF 35
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 29.3 bits (66), Expect = 0.020
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 33 FVCVVCGSRLQRGEQFVIKQGQLFCRPDYEK 63
FVC C + F +G+ +C D++
Sbjct: 1 FVCAQCFQQFP-EGLFYEFEGRKYCEHDFQM 30
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 28.6 bits (64), Expect = 0.034
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 2 LYVKKCLGCSEKLGPDELVMKTLDNVFHVQCF 33
KC GC + + + ++ V+H CF
Sbjct: 6 EDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 27.9 bits (62), Expect = 0.051
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 7 CLGCSEKLGPDELVMKTLDNVFHVQCF 33
C GC E + D + LD VFHV CF
Sbjct: 1 CGGCGEDVVGDGAGVVALDRVFHVGCF 27
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein
6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.4 bits (58), Expect = 0.19
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 34 VCVVCGSRLQRGEQFVIKQGQLFCRPDYEKEVE 66
VC C ++L RG+ F + + +C Y +E
Sbjct: 1 VCSTCRAQL-RGQHFYAVERRAYCEGCYVATLE 32
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 26.2 bits (58), Expect = 0.20
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 4 VKKCLGCSEKLGPDELVMKTLDNVFHVQC 32
K+C GC K+ D ++ +D+ +H +C
Sbjct: 2 WKRCAGCGGKIA-DRFLLYAMDSYWHSRC 29
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 24.4 bits (53), Expect = 1.4
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 2 LYVKKCLGCSEKL-GPDELVMKTLDNVFHVQC 32
LY +C C + + G V+ L +H C
Sbjct: 13 LYGTRCFSCDQFIEGE---VVSALGKTYHPDC 41
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima
[TaxId: 2336]}
Length = 451
Score = 26.5 bits (58), Expect = 1.4
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 54 QLFCRPDYEKEVEMLQGYAQGIPFDLITSSKSHDGRRG------PKRPRTILTTQQRRAF 107
++ D+ E++ G+ + IT S+S+ + P+
Sbjct: 50 EVEGATDHYV-WELM--RRCGVSEEYITGSRSNKEKWLALAKVFPRFVGNPTYEWIHLDL 106
Query: 108 KASFEISPKPCRK 120
F I +
Sbjct: 107 WRRFNIKKVISEE 119
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 23.9 bits (52), Expect = 2.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 35 CVVCGSRLQRGEQFVIKQGQLFCRPDYEK 63
C CG L+ K G+++C+ Y K
Sbjct: 2 CAKCGKSLESTTLAD-KDGEIYCKGCYAK 29
>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex
aeolicus [TaxId: 63363]}
Length = 152
Score = 24.6 bits (53), Expect = 4.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 6 KCLGCSEKLGPDEL 19
+ GC+ K+GP +L
Sbjct: 7 RSSGCAAKVGPGDL 20
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 22.4 bits (48), Expect = 6.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 35 CVVCGSRLQRGEQFVIKQGQLFCRPDYEK 63
C C + + FV ++G L+C YEK
Sbjct: 2 CAHCKNTMAY-IGFVEEKGALYCELCYEK 29
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 22.4 bits (48), Expect = 7.0
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 5 KKCLGCSEKLGPDELVMKTLDNVFHVQCF 33
+KC CS+ + + +++ + +H CF
Sbjct: 9 EKCATCSQPI--LDRILRAMGKAYHPGCF 35
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 30
Score = 21.8 bits (46), Expect = 9.4
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 5 KKCLGCSEKLGPDELVMKTLDNVFHVQCF 33
C C + + P E V LD +H CF
Sbjct: 3 PNCARCGKIVYPTEKV-NCLDKFWHKACF 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.429
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,496
Number of extensions: 22478
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 49
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.4 bits)