BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15438
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/329 (58%), Positives = 225/329 (68%), Gaps = 37/329 (11%)
Query: 2 RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
+DV + + P L KHA+YI Y K+DYEYCMSEYLRMSG+YWG+T + L+ QL
Sbjct: 6 KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 65
Query: 62 MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
M ++ I FI C H CGGVSASI HDPH+LYTLSAVQI L + H + VDK+VAYV
Sbjct: 66 MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 125
Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
GSESHAG YCC GFL+IT LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
LASL ++GR WI+ LR FILA Q T F
Sbjct: 246 LASLKIIGRLHWIDREKLRSFILACQDEETGGF--------------------------- 278
Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAA 330
+DRP D+ DPFHTLFG+A
Sbjct: 279 ----------ADRPGDMVDPFHTLFGIAG 297
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/329 (58%), Positives = 225/329 (68%), Gaps = 37/329 (11%)
Query: 2 RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
+DV + + P L KHA+YI Y K+DYEYCMSEYLRMSG+YWG+T + L+ QL
Sbjct: 5 KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 64
Query: 62 MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
M ++ I FI C H CGGVSASI HDPH+LYTLSAVQI L + H + VDK+VAYV
Sbjct: 65 MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 124
Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 125 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 184
Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
GSESHAG YCC GFL+IT LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 185 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 244
Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
LASL ++GR WI+ LR FILA Q T F
Sbjct: 245 LASLKIIGRLHWIDREKLRSFILACQDEETGGF--------------------------- 277
Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAA 330
+DRP D+ DPFHTLFG+A
Sbjct: 278 ----------ADRPGDMVDPFHTLFGIAG 296
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 117/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R + YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPTLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 134 QSPDGGFGGGPGQYPHLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G + AV L ++G +A IN K
Sbjct: 117 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTTAAVNALCIIGTEEAYNVINREK 176
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 177 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 236
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 237 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 283
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 117/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R + YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPTLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E + +K++ Y+ L+QPDGSF
Sbjct: 134 QSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 117/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R + YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPTLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E + +K++ Y+ L+QPDGSF
Sbjct: 134 QSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 56 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 112
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 113 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 172
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 173 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 232
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 233 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292
Query: 251 G 251
Sbjct: 293 A 293
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 96 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 155
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 156 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 215
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 216 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 262
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ R YW + +L LLD + +PQ D F+ C
Sbjct: 56 KHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 112
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 113 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 172
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 173 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 232
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 233 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292
Query: 251 G 251
Sbjct: 293 A 293
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 96 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 155
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 156 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 215
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 216 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 262
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ R YW + +L LLD + +PQ D F+ C
Sbjct: 55 KHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 111
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 112 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 171
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 172 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 231
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 232 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 291
Query: 251 G 251
Sbjct: 292 A 292
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 95 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 154
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 155 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 214
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 215 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 261
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 115/241 (47%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ R YW + +L LLD + +PQ D F+ C
Sbjct: 56 KHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 112
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 113 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 172
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 173 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 232
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 233 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292
Query: 251 G 251
Sbjct: 293 A 293
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 96 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 155
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 156 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 215
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 216 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 262
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 80 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 136
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 137 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 196
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 197 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 256
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 257 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 316
Query: 251 G 251
Sbjct: 317 A 317
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 120 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 179
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 180 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 239
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 240 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 286
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 134 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 117 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 176
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 177 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 236
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 237 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 283
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 76 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 132
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 133 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 192
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 193 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 252
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 253 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 312
Query: 251 G 251
Sbjct: 313 A 313
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 116 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 175
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 176 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 235
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 236 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 282
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E V +K++ Y+ L+QPDGSF
Sbjct: 134 QSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 111 PVDKIVA-----YVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSK 162
P+ +IVA ++ Q PDG F G ++ AV L ++G +A IN K
Sbjct: 117 PIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREK 176
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222
++++ S DG F G E YC S+T + + A W+A Q
Sbjct: 177 LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWE 236
Query: 223 GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
GG+ G P Y++ LA+L +L + +N +L +++ + Q+R
Sbjct: 237 GGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVTSRQMR 283
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E + +K++ Y+ L+QPDGSF
Sbjct: 134 QSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFD---FITQC 74
KH Y+K+ D C+ + R YW + +L LLD + +PQ D F+ C
Sbjct: 77 KHFHYLKRGLRQLTDAYECL-DASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELC 133
Query: 75 IHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKIVAYVSKLQQPDGSFFG 131
P GG PH+ T +AV C+I E + +K++ Y+ L+QPDGSF
Sbjct: 134 QSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLM 193
Query: 132 DMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191
+ GEVD R ++CA + SL + E+I C N++GG G PG E+H G T+
Sbjct: 194 HVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTF 253
Query: 192 CCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250
C + L I ++ L W+ RQ+ GG GR KL D CYS+W L +L R
Sbjct: 254 CGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
Query: 251 G 251
Sbjct: 314 A 314
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 135/291 (46%), Gaps = 39/291 (13%)
Query: 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFI- 71
+FL +H + ++ + Y E R++ ++ ++ L +LD LD + +D I ++I
Sbjct: 19 DFLRDRHVRFFQRCLQVLPE-RYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIY 77
Query: 72 ---------TQCIHPCG-------GVSASISHDP---------HILYTLSAVQIACLINR 106
+ CG G+ + S +P HI T + ++CLI
Sbjct: 78 SLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTG--LSCLIIL 135
Query: 107 EHELP-VDK--IVAYVSKLQQPDGSFFGDMYG-EVDTRFSFCAVACLSLLGKLDAINLSK 162
+L VDK +A + LQ DGSF G E D RF +CA +L +++ K
Sbjct: 136 GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKK 195
Query: 163 AVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI----DADKLAWWLAER 218
A+ +I ++D G G ESH G T+C + L + G L E+ + +++ W R
Sbjct: 196 AISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR 255
Query: 219 QLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVR 269
Q G +GRP K D CYS+WV A+L +L + N R +IL++Q R
Sbjct: 256 Q--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDR 304
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 117/279 (41%), Gaps = 57/279 (20%)
Query: 20 AEYIKKYSD--NKEDYEYCMSEYLRMSG------------MYWGITTLSLLD-QLDDMPQ 64
+E+ K+YS +E ++ S + ++ G ++W + +L LL LD +
Sbjct: 52 SEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTK 111
Query: 65 DTIFDFITQCIHPCGGVSA--SISHDPHILYTLSAV-QIACLIN-------REHELPVDK 114
D + + + P GG + S PH+L T ++V +A N ++
Sbjct: 112 DRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQS 171
Query: 115 IVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFD 174
I + + ++PDG F GEVD R ++C + +LL + L +F+ +C ++
Sbjct: 172 IYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYE 231
Query: 175 GGFG------------------SRPG-----SESHAGLTYCCVG--FLSITGHLH----E 205
GGF S P +E+H G T C + FL + L
Sbjct: 232 GGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLS 291
Query: 206 IDADKLAWWLAERQ---LPSGGLNGRPEKLPDVCYSWWV 241
IDA+ W +Q + GG GR KL D CYSWWV
Sbjct: 292 IDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWV 330
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 76/201 (37%), Gaps = 65/201 (32%)
Query: 103 LINREHELPVDKIVAYVSKLQQPDGSFFG---------------DMYGEVDTRFSFCAVA 147
+INR+ KI+ ++ K Q DG G YGE D R + A+
Sbjct: 114 IINRK------KIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALL 167
Query: 148 CLSLLGKLDA-------------INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCV 194
L+ D I+L +FIL N +GGF S ESH G T+C +
Sbjct: 168 IRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAI 227
Query: 195 GFLSITGH-LHEIDADKLAWWLAERQ----------------------------LPSGGL 225
L + + L ++ + K WL RQ + GG
Sbjct: 228 ASLKLLNYPLEKLKSTK--EWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGF 285
Query: 226 NGRPEKLPDVCYSWWVLASLH 246
NGR KL D CYSWW SL+
Sbjct: 286 NGRENKLSDTCYSWWCTGSLY 306
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 25/182 (13%)
Query: 70 FITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSF 129
FI I+ GG S++I + H+ +T A+ L+N P++K+ + L +
Sbjct: 199 FILDRININGGFSSTIMDESHLGFTFCAIASLKLLN----YPLEKLKSTKEWLIHRQVDY 254
Query: 130 FGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGL 189
++Y + +D GGF R S
Sbjct: 255 PENLYPKDGNGDGNGNGDNYEYYRNIDI-----------------GGFNGRENKLSDTCY 297
Query: 190 TYCCVGFLSI--TGHLHEIDADKLAWWLAERQLPS--GGLNGRPEKLPDVCYSWWVLASL 245
++ C G L + +D +K +L + GG P+ PD +S+ LASL
Sbjct: 298 SWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASL 357
Query: 246 HM 247
+
Sbjct: 358 SL 359
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 112 VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAIN--LSKAVEFILS 169
+ + V Y+ + Q+PDGS+FG +G + V+ L +G +D + KA++++
Sbjct: 468 IRRAVEYLKREQKPDGSWFG-RWGVNYLYGTGAVVSALKAVG-IDTREPYIQKALDWVEQ 525
Query: 170 CCNFDGGFG-----------SRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218
N DGG+G + G+ + + + + ++ G A + +L E
Sbjct: 526 HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIA-GGRAESEAARRGVQYLVET 584
Query: 219 QLPSGGLN 226
Q P GG +
Sbjct: 585 QRPDGGWD 592
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 112 VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAIN--LSKAVEFILS 169
+ + V Y+ + Q+PDGS+FG +G + V+ L +G +D + KA++++
Sbjct: 468 IRRAVEYLKREQKPDGSWFG-RWGVNYLYGTGAVVSALKAVG-IDTREPYIQKALDWVEQ 525
Query: 170 CCNFDGGFG-----------SRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218
N DGG+G + G+ + + + + ++ G A + +L E
Sbjct: 526 HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIA-GGRAESEAARRGVQYLVET 584
Query: 219 QLPSGGLN 226
Q P GG +
Sbjct: 585 QRPDGGWD 592
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 112 VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAIN--LSKAVEFILS 169
+ + V Y+ + Q+PDGS+FG +G + V+ L +G +D + KA++++
Sbjct: 468 IRRAVEYLKREQKPDGSWFG-RWGVNYLYGTGAVVSALKAVG-IDTREPYIQKALDWVEQ 525
Query: 170 CCNFDGGFG-----------SRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218
N DGG+G + G+ + + + + ++ G A + +L E
Sbjct: 526 HQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIA-GGRAESEAARRGVQYLVET 584
Query: 219 QLPSGGLN 226
Q P GG +
Sbjct: 585 QRPDGGWD 592
>pdb|3NXD|C Chain C, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|B Chain B, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|A Chain A, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|D Chain D, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXD|E Chain E, Jc Polyomavirus Vp1 In Complex With Lstc
pdb|3NXG|A Chain A, Jc Polyomavirus Vp1
pdb|3NXG|B Chain B, Jc Polyomavirus Vp1
pdb|3NXG|C Chain C, Jc Polyomavirus Vp1
pdb|3NXG|D Chain D, Jc Polyomavirus Vp1
pdb|3NXG|E Chain E, Jc Polyomavirus Vp1
Length = 272
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 92 LYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGS------FFGDMYG--EVDTRFSF 143
++ +A + ++N EH+ +DK AY + PD + +FG + G V
Sbjct: 152 IFPKNATVQSQVMNTEHKAYLDKNKAYPVECWVPDPTRNENTRYFGTLTGGENVPPVLHI 211
Query: 144 CAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLT 190
A LL + L K LS + G F +R GS+ GL+
Sbjct: 212 TNTATTVLLDEFGVGPLCKGDNLYLSAVDVCGMFTNRSGSQQWRGLS 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,742,530
Number of Sequences: 62578
Number of extensions: 451196
Number of successful extensions: 1272
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1120
Number of HSP's gapped (non-prelim): 58
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)