Query psy15438
Match_columns 358
No_of_seqs 239 out of 1628
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:03:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0366|consensus 100.0 2E-85 4.3E-90 585.9 23.3 316 2-356 6-321 (329)
2 PLN02710 farnesyltranstransfer 100.0 9.7E-79 2.1E-83 595.9 28.7 308 10-355 40-428 (439)
3 PLN03201 RAB geranylgeranyl tr 100.0 3.8E-78 8.2E-83 578.3 30.6 306 12-356 6-311 (316)
4 COG5029 CAL1 Prenyltransferase 100.0 4.9E-75 1.1E-79 532.7 20.9 306 11-355 23-333 (342)
5 KOG0365|consensus 100.0 1.2E-73 2.5E-78 527.3 20.4 303 13-355 72-408 (423)
6 cd02893 FTase Protein farnesyl 100.0 6.3E-71 1.4E-75 525.2 28.4 281 16-334 1-299 (299)
7 KOG0367|consensus 100.0 1.3E-70 2.7E-75 498.7 24.7 306 10-355 7-338 (347)
8 cd02895 GGTase-I Geranylgerany 100.0 2.8E-70 6.1E-75 522.2 28.2 281 16-334 1-307 (307)
9 cd02894 GGTase-II Geranylgeran 100.0 1.4E-69 3E-74 514.1 29.0 284 14-334 1-287 (287)
10 cd02890 PTase Protein prenyltr 100.0 9.1E-64 2E-68 474.1 28.0 281 16-334 1-286 (286)
11 cd02895 GGTase-I Geranylgerany 100.0 1.2E-47 2.6E-52 366.4 24.6 234 13-248 48-307 (307)
12 cd02894 GGTase-II Geranylgeran 100.0 2.8E-47 6E-52 361.5 24.4 235 13-248 48-287 (287)
13 PLN03201 RAB geranylgeranyl tr 100.0 4.5E-47 9.8E-52 363.6 24.2 238 61-336 7-244 (316)
14 cd02893 FTase Protein farnesyl 100.0 1.3E-46 2.7E-51 358.3 22.8 234 64-336 1-239 (299)
15 PLN02710 farnesyltranstransfer 100.0 1.3E-45 2.9E-50 362.1 22.7 236 61-336 43-283 (439)
16 cd02890 PTase Protein prenyltr 100.0 2.4E-44 5.2E-49 341.2 24.5 236 13-248 46-286 (286)
17 KOG0366|consensus 100.0 3.4E-40 7.3E-45 295.4 21.8 237 13-251 65-304 (329)
18 COG5029 CAL1 Prenyltransferase 100.0 2.5E-39 5.3E-44 297.5 18.3 239 13-251 74-317 (342)
19 KOG0367|consensus 100.0 2.5E-37 5.4E-42 281.5 21.8 239 13-251 57-322 (347)
20 cd00688 ISOPREN_C2_like This g 100.0 2.6E-32 5.6E-37 255.1 26.5 276 17-333 2-299 (300)
21 KOG0365|consensus 100.0 3.2E-32 6.9E-37 252.5 17.4 236 15-250 121-371 (423)
22 cd00688 ISOPREN_C2_like This g 99.9 2.3E-26 5E-31 214.9 21.6 234 12-247 50-299 (300)
23 cd02889 SQCY Squalene cyclase 99.9 4.5E-23 9.7E-28 200.2 22.9 253 17-279 2-316 (348)
24 TIGR03463 osq_cycl 2,3-oxidosq 99.9 2.7E-22 5.9E-27 208.3 23.7 258 15-279 277-602 (634)
25 TIGR01507 hopene_cyclase squal 99.9 1.2E-21 2.6E-26 203.4 27.1 259 14-279 287-596 (635)
26 cd02892 SQCY_1 Squalene cyclas 99.9 1.7E-21 3.7E-26 203.4 25.4 259 15-280 279-603 (634)
27 TIGR01787 squalene_cyclas squa 99.9 3.1E-21 6.7E-26 200.2 24.0 258 15-279 268-586 (621)
28 cd02889 SQCY Squalene cyclase 99.9 3.1E-20 6.7E-25 180.4 22.2 240 65-336 2-293 (348)
29 TIGR03463 osq_cycl 2,3-oxidosq 99.9 2E-20 4.3E-25 194.4 19.2 214 15-229 329-606 (634)
30 PLN02993 lupeol synthase 99.8 1.2E-19 2.6E-24 189.2 21.7 258 15-279 390-720 (763)
31 PLN03012 Camelliol C synthase 99.8 2.5E-19 5.5E-24 186.4 23.9 258 15-279 390-720 (759)
32 TIGR01507 hopene_cyclase squal 99.8 1.4E-19 3.1E-24 188.0 19.8 213 15-228 337-599 (635)
33 cd02892 SQCY_1 Squalene cyclas 99.8 2.6E-19 5.5E-24 187.1 19.8 213 15-228 330-605 (634)
34 PF13249 Prenyltrans_2: Prenyl 99.8 5.4E-20 1.2E-24 149.8 8.3 109 68-179 1-113 (113)
35 COG1689 Uncharacterized protei 99.8 3.8E-18 8.3E-23 150.0 19.4 259 13-335 5-272 (274)
36 TIGR01787 squalene_cyclas squa 99.8 4.4E-18 9.5E-23 176.7 18.3 214 15-229 320-590 (621)
37 PLN03012 Camelliol C synthase 99.8 2.2E-18 4.9E-23 179.4 15.5 163 64-227 515-722 (759)
38 PLN02993 lupeol synthase 99.8 3E-18 6.4E-23 178.8 15.7 163 64-227 515-722 (763)
39 PF13249 Prenyltrans_2: Prenyl 99.8 1.3E-18 2.9E-23 141.6 8.6 108 116-226 1-112 (113)
40 cd02897 A2M_2 Proteins similar 99.7 2.9E-14 6.3E-19 135.7 24.8 229 32-279 12-276 (292)
41 cd02896 complement_C3_C4_C5 Pr 99.7 4.1E-14 8.9E-19 135.1 23.9 227 32-279 12-281 (297)
42 COG1689 Uncharacterized protei 99.5 7.1E-13 1.5E-17 117.0 15.1 213 61-336 5-226 (274)
43 cd02896 complement_C3_C4_C5 Pr 99.5 4E-12 8.6E-17 121.4 18.7 196 17-227 55-283 (297)
44 cd02897 A2M_2 Proteins similar 99.5 1E-11 2.2E-16 118.3 20.6 210 16-245 44-289 (292)
45 PF00432 Prenyltrans: Prenyltr 99.4 1.1E-12 2.4E-17 89.0 5.0 44 206-249 1-44 (44)
46 PF00432 Prenyltrans: Prenyltr 99.3 1.6E-12 3.4E-17 88.2 4.7 44 158-201 1-44 (44)
47 cd02891 A2M_like Proteins simi 99.3 1E-09 2.2E-14 103.3 23.2 228 32-279 12-266 (282)
48 KOG0497|consensus 99.3 2.2E-10 4.8E-15 116.2 18.0 235 37-279 412-719 (760)
49 PF13243 Prenyltrans_1: Prenyl 99.2 2.1E-11 4.6E-16 98.6 4.5 104 113-220 2-107 (109)
50 KOG0497|consensus 99.2 2.3E-10 4.9E-15 116.1 11.8 164 62-226 509-720 (760)
51 PF13243 Prenyltrans_1: Prenyl 99.1 6.7E-11 1.5E-15 95.7 4.5 104 65-172 2-107 (109)
52 PF07678 A2M_comp: A-macroglob 98.9 6.5E-08 1.4E-12 90.0 15.1 190 68-279 3-228 (246)
53 cd02891 A2M_like Proteins simi 98.8 8.7E-07 1.9E-11 83.4 20.7 213 12-245 47-279 (282)
54 PF07678 A2M_comp: A-macroglob 98.7 3.4E-07 7.3E-12 85.2 12.6 172 37-227 21-230 (246)
55 COG1657 SqhC Squalene cyclase 98.4 1E-06 2.2E-11 88.7 8.6 173 56-229 275-482 (517)
56 COG1657 SqhC Squalene cyclase 98.3 2.2E-06 4.7E-11 86.3 8.9 226 38-269 195-474 (517)
57 PLN02592 ent-copalyl diphospha 97.3 0.018 4E-07 61.7 19.1 257 17-337 75-376 (800)
58 PLN02279 ent-kaur-16-ene synth 97.3 0.042 9.1E-07 59.1 21.5 255 13-337 32-331 (784)
59 TIGR02474 pec_lyase pectate ly 96.9 0.0045 9.8E-08 58.5 8.8 90 92-181 44-160 (290)
60 TIGR02474 pec_lyase pectate ly 96.2 0.021 4.5E-07 54.1 8.2 67 64-131 69-158 (290)
61 KOG1366|consensus 95.9 0.16 3.4E-06 58.0 14.5 224 32-279 934-1194(1436)
62 PF01122 Cobalamin_bind: Eukar 91.4 0.77 1.7E-05 44.3 7.7 82 90-179 185-279 (326)
63 PF09492 Pec_lyase: Pectic aci 87.9 0.76 1.7E-05 43.6 4.6 82 92-173 39-147 (289)
64 PF01122 Cobalamin_bind: Eukar 87.2 2 4.2E-05 41.6 7.0 60 159-226 216-278 (326)
65 PF05817 Ribophorin_II: Oligos 85.6 54 0.0012 34.9 21.5 116 40-176 46-162 (636)
66 PLN02592 ent-copalyl diphospha 85.3 2.3 4.9E-05 46.1 7.0 76 139-216 97-174 (800)
67 PF10022 DUF2264: Uncharacteri 78.9 70 0.0015 31.5 18.1 227 14-249 73-345 (361)
68 PLN02279 ent-kaur-16-ene synth 77.9 3.8 8.3E-05 44.4 5.5 60 139-199 55-118 (784)
69 PF05817 Ribophorin_II: Oligos 71.6 80 0.0017 33.6 13.3 138 40-201 121-268 (636)
70 KOG1366|consensus 69.9 12 0.00026 43.3 7.1 92 137-228 943-1046(1436)
71 PF09492 Pec_lyase: Pectic aci 65.2 5.4 0.00012 38.0 2.8 84 138-221 37-147 (289)
72 PF07944 DUF1680: Putative gly 61.0 89 0.0019 32.3 11.1 92 189-285 238-352 (520)
73 PF07470 Glyco_hydro_88: Glyco 49.8 1.5E+02 0.0033 28.4 10.1 160 65-224 93-294 (336)
74 COG1331 Highly conserved prote 35.7 5.4E+02 0.012 27.6 11.9 42 112-153 298-344 (667)
75 cd00249 AGE AGE domain; N-acyl 34.2 4.3E+02 0.0094 25.4 14.8 69 64-132 16-100 (384)
76 PRK13617 psbV cytochrome c-550 33.8 57 0.0012 28.6 3.8 67 108-179 98-165 (170)
77 TIGR03046 PS_II_psbV2 photosys 29.1 94 0.002 26.8 4.3 54 158-227 96-152 (155)
78 PRK13621 psbV cytochrome c-550 28.8 1.1E+02 0.0023 26.9 4.6 56 157-228 106-164 (170)
79 PRK13621 psbV cytochrome c-550 28.3 98 0.0021 27.1 4.3 54 111-180 108-164 (170)
80 TIGR01535 glucan_glucosid gluc 25.8 5.3E+02 0.012 27.6 10.1 81 89-171 295-386 (648)
81 PF07470 Glyco_hydro_88: Glyco 25.8 2.1E+02 0.0044 27.4 6.7 65 112-176 217-294 (336)
82 TIGR03046 PS_II_psbV2 photosys 25.5 1.1E+02 0.0025 26.3 4.2 56 111-179 97-152 (155)
83 PF10022 DUF2264: Uncharacteri 25.1 6.7E+02 0.015 24.7 14.4 180 15-202 133-346 (361)
84 PF08157 NUC129: NUC129 domain 24.7 1.5E+02 0.0033 21.2 4.0 57 4-73 4-60 (63)
85 PF07944 DUF1680: Putative gly 23.7 2.4E+02 0.0051 29.2 7.0 55 125-179 44-104 (520)
86 PRK13619 psbV cytochrome c-550 21.8 1.5E+02 0.0032 25.7 4.1 64 108-179 90-156 (160)
87 COG2373 Large extracellular al 21.3 2E+02 0.0043 34.2 6.3 116 5-125 1144-1268(1621)
No 1
>KOG0366|consensus
Probab=100.00 E-value=2e-85 Score=585.90 Aligned_cols=316 Identities=59% Similarity=1.101 Sum_probs=308.5
Q ss_pred cccccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcc
Q psy15438 2 RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGV 81 (358)
Q Consensus 2 ~~~~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF 81 (358)
+||++..+.++++.++||++||....+++..+.|+..|+.|++.+||++++|++|+.++..++|+++.|+++||+++|||
T Consensus 6 ~dv~~~~d~~~~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGf 85 (329)
T KOG0366|consen 6 LDVREEKDAPDELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGF 85 (329)
T ss_pred ccccCcCCcHHHHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCc
Confidence 58999999999999999999999988888889999999999999999999999999998889999999999999999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHH
Q psy15438 82 SASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLS 161 (358)
Q Consensus 82 ~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~ 161 (358)
++.+|++||+.+|++||++|++++.++.+|++++..||..+|++||+|.+..+||.|+|++|||+++|++|+.++.++++
T Consensus 86 a~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve 165 (329)
T KOG0366|consen 86 AGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVE 165 (329)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHH
Q psy15438 162 KAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241 (358)
Q Consensus 162 ~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~ 241 (358)
++|+|+++|.|.|||||.+||.|||++..||++++|+++++++.+|.+.+.+||.+||.++||.||||+|.+|+|||||+
T Consensus 166 ~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWv 245 (329)
T KOG0366|consen 166 KAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245 (329)
T ss_pred HHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCCh
Q psy15438 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDP 321 (358)
Q Consensus 242 ~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~ 321 (358)
+++|.++|+.+|+|++++++||++||+. +.||| +|||+..+|+
T Consensus 246 lsSL~iigrl~wId~ekL~~FIl~cQd~-----~~GGf--------------------------------sDRpgd~~D~ 288 (329)
T KOG0366|consen 246 LSSLAIIGRLHWIDREKLTKFILACQDE-----ETGGF--------------------------------SDRPGDEVDI 288 (329)
T ss_pred HhHHHHhhhhhhccHHHHHHHHHhcCCC-----CCCCc--------------------------------CCCCCCcccH
Confidence 9999999999999999999999999998 78999 9999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCcCccccCCccccc
Q psy15438 322 FHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFH 356 (358)
Q Consensus 322 ~hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~~ 356 (358)
|||+|++|||||+++ ++|++|||.||||++++.
T Consensus 289 fHt~FgiAGLSLlg~--~~l~~idP~fcmp~~v~~ 321 (329)
T KOG0366|consen 289 FHTLFGIAGLSLLGY--PGLKPIDPIFCMPKEVLQ 321 (329)
T ss_pred HHHHHHHhhHhhhCC--CCceecCCcccCcHHHHh
Confidence 999999999999999 999999999999987653
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=9.7e-79 Score=595.92 Aligned_cols=308 Identities=28% Similarity=0.512 Sum_probs=287.6
Q ss_pred CccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCCCCCcccccCCCC
Q psy15438 10 LPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIHPCGGVSASISHD 88 (358)
Q Consensus 10 ~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~ 88 (358)
..+.|.++||++|+++++.. +|..|...|++|+|++||+|++|.+|+. ++..+++++++||++||+++|||++.+++.
T Consensus 40 ~~~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~ 118 (439)
T PLN02710 40 VMLELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQL 118 (439)
T ss_pred ccccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCC
Confidence 34689999999999999874 6899999999999999999999999997 566788999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcc---cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHH
Q psy15438 89 PHILYTLSAVQIACLINR---EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVE 165 (358)
Q Consensus 89 ~~~~~Ty~Al~~L~ll~~---~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~ 165 (358)
+|+.+||+|+++|.+|+. ++.+|++++++||++||++||||...+++|+|+|+||||++++.+|+.++.++.+++++
T Consensus 119 ~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~ 198 (439)
T PLN02710 119 PHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGD 198 (439)
T ss_pred ccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHH
Confidence 999999999999999974 57789999999999999999999999999999999999999999999988899999999
Q ss_pred HHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHHH
Q psy15438 166 FILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASL 245 (358)
Q Consensus 166 ~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L 245 (358)
||++||++||||+++|+.|+|++|||||+++|++|++++.+|.+++++||++||..+|||+|||||.+|+|||||++++|
T Consensus 199 ~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L 278 (439)
T PLN02710 199 YILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF 278 (439)
T ss_pred HHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHhCCCC-----------------------------------------------------------CCCHHHHHHHHHHh
Q psy15438 246 HMLGRGT-----------------------------------------------------------WINSAALRKFILAS 266 (358)
Q Consensus 246 ~ll~~~~-----------------------------------------------------------~~d~~~l~~~ll~~ 266 (358)
++|++.. ++|.++|++||+.|
T Consensus 279 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c 358 (439)
T PLN02710 279 ALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLC 358 (439)
T ss_pred HHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 9998542 36788999999999
Q ss_pred cCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCC---------
Q psy15438 267 QVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPP--------- 337 (358)
Q Consensus 267 Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~--------- 337 (358)
|+. +.||| +|+|++.||+|||||+|+|||++++.
T Consensus 359 ~q~-----~~GG~--------------------------------~DkPgk~~D~YHT~y~LsGLSl~q~~~~~~~~~~~ 401 (439)
T PLN02710 359 SQV-----LDGGL--------------------------------RDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPP 401 (439)
T ss_pred cCC-----CCCCc--------------------------------CCCCCCCCchhHHHHHHHHHHHHhhcccccCCCCC
Confidence 877 57999 99999999999999999999999751
Q ss_pred ---------CCCCCCcCccccCCcccc
Q psy15438 338 ---------TPDVLPVDPTYCMPVRTF 355 (358)
Q Consensus 338 ---------~~~~~~~~~~~~~~~~~~ 355 (358)
.+.|.|+||+|+||.+.+
T Consensus 402 ~~~~~~g~~~n~l~~~~p~~ni~~~~~ 428 (439)
T PLN02710 402 LPRHVLGPYSNLLEPIHPLYNVVLDKY 428 (439)
T ss_pred ccccccCCCccccCCCCCccCCCHHHH
Confidence 236999999999998654
No 3
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=3.8e-78 Score=578.30 Aligned_cols=306 Identities=56% Similarity=1.029 Sum_probs=290.3
Q ss_pred cccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCCCCCch
Q psy15438 12 KEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHI 91 (358)
Q Consensus 12 ~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~ 91 (358)
.++.++||++||.+++..+.++.+...+++|++.+||+|++|++|+.++..+++++++||++||+++|||++.+++++|+
T Consensus 6 ~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~ 85 (316)
T PLN03201 6 GELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHI 85 (316)
T ss_pred hhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcccH
Confidence 47899999999999887544455455689999999999999999998878899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcc
Q psy15438 92 LYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q 171 (358)
.+||+|+++|.+++.++.+|++++++||+++|++||||.+.+++|+|+|+||||++++.+++..+.++++++++||++||
T Consensus 86 ~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq 165 (316)
T PLN03201 86 LYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCK 165 (316)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 99999999999998888899999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhCCC
Q psy15438 172 NFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRG 251 (358)
Q Consensus 172 ~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~ 251 (358)
++||||+.+|++|+|+++||||+++|++++.++.+|.+++++||++||..+|||+|||||.+|+|||||++++|++|++.
T Consensus 166 ~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~ 245 (316)
T PLN03201 166 NFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRV 245 (316)
T ss_pred CCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHH
Q psy15438 252 TWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAAL 331 (358)
Q Consensus 252 ~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~L 331 (358)
+++|.+++++||++||++ +.||| +|+|++.||+|||||+|+||
T Consensus 246 ~~~d~~~l~~~i~~~q~~-----~~GGf--------------------------------~~~p~~~~D~~ht~~~l~~l 288 (316)
T PLN03201 246 HWIDKDKLAKFILDCQDD-----ENGGI--------------------------------SDRPDDAVDVFHTFFGVAGL 288 (316)
T ss_pred cccCHHHHHHHHHHHcCC-----CCCCc--------------------------------CCCcCCCCChhHHHHHHHHH
Confidence 999999999999999997 57999 99999999999999999999
Q ss_pred HhcCCCCCCCCCcCccccCCccccc
Q psy15438 332 TMLDPPTPDVLPVDPTYCMPVRTFH 356 (358)
Q Consensus 332 s~~~~~~~~~~~~~~~~~~~~~~~~ 356 (358)
|++++ ++|.+|||.++||.++++
T Consensus 289 sl~~~--~~l~~~~p~~~~~~~~~~ 311 (316)
T PLN03201 289 SLLGY--PGLKPIDPAYALPVDVVN 311 (316)
T ss_pred HhcCC--CCCCCCCCcccCCHHHHH
Confidence 99998 789999999999998764
No 4
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-75 Score=532.70 Aligned_cols=306 Identities=39% Similarity=0.737 Sum_probs=291.3
Q ss_pred ccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCC-CCChHHHHHHHHhcCCCCCcccccCCCCC
Q psy15438 11 PKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLD-DMPQDTIFDFITQCIHPCGGVSASISHDP 89 (358)
Q Consensus 11 ~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~-~~~~~~~i~~i~~~q~~dGGF~~~~~~~~ 89 (358)
...|..++|++|+........+..|+..+++++|++||..+++.+++..+ ..++|+.+.++++|+.+.|||++.+++++
T Consensus 23 ~l~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~ 102 (342)
T COG5029 23 HLQLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDS 102 (342)
T ss_pred ccccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccch
Confidence 35789999999999987766777888899999999999999999999866 67899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcc---cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHH
Q psy15438 90 HILYTLSAVQIACLINR---EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEF 166 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~---~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~ 166 (358)
|+.+|++|+++|+++++ +++++++++.+||.++|+|||+|.....+|+|.|+.|+|+.+++++|.++..+.+.+++|
T Consensus 103 hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdy 182 (342)
T COG5029 103 HLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDY 182 (342)
T ss_pred hHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 99999999999999964 567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhc-HHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHHH
Q psy15438 167 ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID-ADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASL 245 (358)
Q Consensus 167 L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~-~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L 245 (358)
|++|||+|||||..|+.|+|+++||||+++|+++++++.++ ++++++||.+||.++|||+||+||.+|+||+||++++|
T Consensus 183 l~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl 262 (342)
T COG5029 183 LKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSL 262 (342)
T ss_pred HHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchH
Confidence 99999999999999999999999999999999999999888 79999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHH
Q psy15438 246 HMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTL 325 (358)
Q Consensus 246 ~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~ 325 (358)
++|++.+++|.+++++||+.||++ ..||| +|+|++.||+|||+
T Consensus 263 ~il~~~~~in~e~L~~yiL~c~q~-----~sGGf--------------------------------sdrp~~~~D~yHt~ 305 (342)
T COG5029 263 AILGKLDFINTEELTDYILDCQQE-----TSGGF--------------------------------SDRPGEEPDVYHTC 305 (342)
T ss_pred HhcchhhhcCHHHHHHHHHhhccc-----CCCCC--------------------------------CCCCcccchHHHHH
Confidence 999999999999999999999988 57999 99999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCcCccccCCcccc
Q psy15438 326 FGVAALTMLDPPTPDVLPVDPTYCMPVRTF 355 (358)
Q Consensus 326 ~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~ 355 (358)
|+|+|||++++ +.|.||||.||||.+.+
T Consensus 306 ~~lagLsl~~~--k~l~~v~p~~clP~e~~ 333 (342)
T COG5029 306 FGLAGLSLIEY--KYLNPVDPIYCLPQEVT 333 (342)
T ss_pred HHHHHHHHhcc--CCCCCCCCcccCCHHHH
Confidence 99999999998 88999999999998764
No 5
>KOG0365|consensus
Probab=100.00 E-value=1.2e-73 Score=527.32 Aligned_cols=303 Identities=33% Similarity=0.604 Sum_probs=279.4
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCCCCCcccccCCCCCch
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIHPCGGVSASISHDPHI 91 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~ 91 (358)
.| ++||.+||.+.+.. +|..|...|++|.|+.||.+++|++|++ +++...+++++||..||.|.|||+++||+.+|+
T Consensus 72 ~~-r~kH~~YL~~~Lr~-Lp~~~~~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HL 149 (423)
T KOG0365|consen 72 IF-RQKHLMYLDKMLRQ-LPSQYTCLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHL 149 (423)
T ss_pred HH-HHHHHHHHHHHHHh-CCCcccccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 44 99999999998765 5888999999999999999999999995 566668899999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcc---cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHH
Q psy15438 92 LYTLSAVQIACLINR---EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFIL 168 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~---~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~ 168 (358)
+.||+||.+|.+++. ++.||++++.+||.+++++||||..+..||.|+|.+|||+++.+++|.+.++..+.+.+||.
T Consensus 150 A~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~ 229 (423)
T KOG0365|consen 150 APTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIA 229 (423)
T ss_pred hHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 999999999999974 57899999999999999999999999999999999999999999999988888999999999
Q ss_pred hcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC-CCCcccCCCCCCCChhHHHHHHHHHHH
Q psy15438 169 SCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL-PSGGLNGRPEKLPDVCYSWWVLASLHM 247 (358)
Q Consensus 169 s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~-~~GGf~gr~~k~~D~cys~w~~a~L~l 247 (358)
+||+++||||+.|+.|+|++|||||+|+|++|++.+..|.+++.+|..+||. .+|||+||.||.+|.|||||++|+..+
T Consensus 230 ~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~i 309 (423)
T KOG0365|consen 230 SCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPI 309 (423)
T ss_pred hcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHH
Confidence 9999999999999999999999999999999999999999999999999998 599999999999999999999999988
Q ss_pred hCCC-----C-----CCCHHHHHHHHHH-hcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCC
Q psy15438 248 LGRG-----T-----WINSAALRKFILA-SQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPL 316 (358)
Q Consensus 248 l~~~-----~-----~~d~~~l~~~ll~-~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (358)
+.+. + .+|.++|.+||+- ||.+ .||| +|||+
T Consensus 310 l~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~------~GGl--------------------------------rDKP~ 351 (423)
T KOG0365|consen 310 LQAFYSSAGHSLEHLLFNKEALQEYILLCCQSP------SGGL--------------------------------RDKPG 351 (423)
T ss_pred HHHHhcccccchhhhhcCHHHHHHHHHhhccCC------CCCc--------------------------------cCCCC
Confidence 8542 2 5789999999986 5655 7999 99999
Q ss_pred CCCChHHHHHHHHHHHhcCC------------------CCCCCCCcCccccCCcccc
Q psy15438 317 DIPDPFHTLFGVAALTMLDP------------------PTPDVLPVDPTYCMPVRTF 355 (358)
Q Consensus 317 ~~~D~~hT~~~l~~Ls~~~~------------------~~~~~~~~~~~~~~~~~~~ 355 (358)
|++|.|||||.|+|||+..+ ..+.|.|+||+|+||.+.+
T Consensus 352 K~~DfYHTCYcLsGLSiAq~y~~~~~d~~~~~~~ilg~~~n~L~p~~pvyni~~~~~ 408 (423)
T KOG0365|consen 352 KPRDFYHTCYCLSGLSIAQHYSCAPSDSPHNPDRILGSSKNSLLPVHPVYNIPIDSV 408 (423)
T ss_pred CCcchhhhhhHhcchhHHhhhccCCCCCCCCCcccccCchhhcCccCccccCCHHHH
Confidence 99999999999999998643 1245999999999998654
No 6
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=6.3e-71 Score=525.17 Aligned_cols=281 Identities=34% Similarity=0.622 Sum_probs=265.4
Q ss_pred hHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCCCCCcccccCCCCCchhHH
Q psy15438 16 GTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYT 94 (358)
Q Consensus 16 ~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~T 94 (358)
+++|++|+++++..+ |..|.+.|.+++|++||+|++|.+|+. .+..+++++++||++||+++|||++.+++++|+.+|
T Consensus 1 ~~~h~~~~~~~l~~~-p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~T 79 (299)
T cd02893 1 REKHIKYLKKSLRQL-PSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATT 79 (299)
T ss_pred ChHHHHHHHHHhhcC-CccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHH
Confidence 589999999998754 889999999999999999999999997 556678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc---cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcc
Q psy15438 95 LSAVQIACLINR---EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171 (358)
Q Consensus 95 y~Al~~L~ll~~---~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q 171 (358)
|+|+++|.+++. .+.+|++++++||+++|++||||...+++|+|+|+||||++++.+|+.+++++++++++||++||
T Consensus 80 y~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ 159 (299)
T cd02893 80 YAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQ 159 (299)
T ss_pred HHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC
Confidence 999999999975 56789999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCC-CCcccCCCCCCCChhHHHHHHHHHHHhCC
Q psy15438 172 NFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250 (358)
Q Consensus 172 ~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~-~GGf~gr~~k~~D~cys~w~~a~L~ll~~ 250 (358)
++||||+++|+.|+|+++||||+++|++++..+.+|.+++++||++||.+ +|||+|||||.+|+|||||++++|+++++
T Consensus 160 ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~ 239 (299)
T cd02893 160 TYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEA 239 (299)
T ss_pred CCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999988 99999999999999999999999999986
Q ss_pred C-------------CCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCC
Q psy15438 251 G-------------TWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLD 317 (358)
Q Consensus 251 ~-------------~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 317 (358)
. .++|.+++++||++||++ +.||| +|+|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~-----~~GGf--------------------------------~~~p~~ 282 (299)
T cd02893 240 ILNAEKKFDDSAEGTLFDQEALQEYILLCCQS-----EEGGL--------------------------------RDKPGK 282 (299)
T ss_pred HhcccccccccccccccCHHHHHHHHHHhcCC-----CCCCc--------------------------------CCCCCC
Confidence 3 468999999999988877 57999 899999
Q ss_pred CCChHHHHHHHHHHHhc
Q psy15438 318 IPDPFHTLFGVAALTML 334 (358)
Q Consensus 318 ~~D~~hT~~~l~~Ls~~ 334 (358)
.||+|||||+|++||+.
T Consensus 283 ~~D~yHT~~~l~~Lsl~ 299 (299)
T cd02893 283 PRDFYHTCYALSGLSIA 299 (299)
T ss_pred CCCchhHHHHHHHHhcC
Confidence 99999999999999973
No 7
>KOG0367|consensus
Probab=100.00 E-value=1.3e-70 Score=498.75 Aligned_cols=306 Identities=34% Similarity=0.592 Sum_probs=282.3
Q ss_pred CccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCC--------Ccc
Q psy15438 10 LPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPC--------GGV 81 (358)
Q Consensus 10 ~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~d--------GGF 81 (358)
-..++.++||++|++++++. .|..|.+.|.+|+.++||+|++|++|+.++.++++.+++||++.|-.. -||
T Consensus 7 ~~~~~~~~kH~~ff~RhL~l-lP~~y~shd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF 85 (347)
T KOG0367|consen 7 GTSRFERKKHIKFFERHLQL-LPSPYQSHDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGF 85 (347)
T ss_pred CcchhhHHHHHHHHHHHHHh-CCCcccccccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeee
Confidence 34589999999999999864 488999999999999999999999999999999999999999998321 267
Q ss_pred cccC----------CCCCchhHHHHHHHHHHHhc-ccCCCChHHHHHHHHhcCCCCCCccccc-CCCcccchhHHHHHHH
Q psy15438 82 SASI----------SHDPHILYTLSAVQIACLIN-REHELPVDKIVAYVSKLQQPDGSFFGDM-YGEVDTRFSFCAVACL 149 (358)
Q Consensus 82 ~~~~----------~~~~~~~~Ty~Al~~L~ll~-~~~~~~~~~~~~~l~s~Q~~dGgf~~~~-~~esd~~~ty~al~~l 149 (358)
.++. .+.||+++||+++++|.+|+ +++++|++.+++++..+|++||+|...+ ++|+|+|++|||++++
T Consensus 86 ~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ 165 (347)
T KOG0367|consen 86 RGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAIC 165 (347)
T ss_pred eeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHH
Confidence 6642 24689999999999999996 5799999999999999999999998754 6799999999999999
Q ss_pred HHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccC--Ch----hcHHHHHHHHHhcCCCCC
Q psy15438 150 SLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL--HE----IDADKLAWWLAERQLPSG 223 (358)
Q Consensus 150 ~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~--~~----~~~~~~~~wL~~~Q~~~G 223 (358)
++|+.++.+|.++++.||++||++||||+..|+.|+|+++||||+|+|++++++ +. .+++++++||.+||..+|
T Consensus 166 ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sg 245 (347)
T KOG0367|consen 166 YMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSG 245 (347)
T ss_pred HHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccC
Confidence 999988899999999999999999999999999999999999999999999986 22 358999999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCccccccccccccccccc
Q psy15438 224 GLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQ 303 (358)
Q Consensus 224 Gf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~ 303 (358)
||+||+||++|+||+||++++|++|+...++|.+++++||++||++ ..|||
T Consensus 246 GfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~-----~iGGF------------------------ 296 (347)
T KOG0367|consen 246 GFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDK-----LIGGF------------------------ 296 (347)
T ss_pred CcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhh-----hcCcc------------------------
Confidence 9999999999999999999999999999999999999999999999 67999
Q ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcCccccCCcccc
Q psy15438 304 GCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTF 355 (358)
Q Consensus 304 ~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~ 355 (358)
+|.|+..||++|||++++||+++++ +.+.||+|.++||.++.
T Consensus 297 --------sK~P~~~pD~~HsylG~~alal~ee--~~~~~v~p~l~~s~~~~ 338 (347)
T KOG0367|consen 297 --------SKWPEEDPDLLHSYLGLAALALLEE--KGLSPVCPSLNMSMRAS 338 (347)
T ss_pred --------cCCCccCchHHHHHHHHHHHHHhcC--CCCCCCCccccccHHHH
Confidence 9999999999999999999999999 99999999999998764
No 8
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=2.8e-70 Score=522.24 Aligned_cols=281 Identities=34% Similarity=0.596 Sum_probs=263.1
Q ss_pred hHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCC---CCChHHHHHHHHhcC----CCCCcccccCC--
Q psy15438 16 GTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLD---DMPQDTIFDFITQCI----HPCGGVSASIS-- 86 (358)
Q Consensus 16 ~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~---~~~~~~~i~~i~~~q----~~dGGF~~~~~-- 86 (358)
++||++|+++++.. .|..|...|.+|+|.+||+|++|.+|+... ..+|+++++||++|| +++|||+++++
T Consensus 1 ~~~H~~y~~~~l~~-lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~ 79 (307)
T cd02895 1 KKKHVKFFQRCLQL-LPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLG 79 (307)
T ss_pred ChHHHHHHHHHhhh-CCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCc
Confidence 47999999999864 588899999999999999999999999754 578899999999999 99999999876
Q ss_pred --------CCCchhHHHHHHHHHHHhcc-cCCCChHHHHHHHHhcCCCCCCccccc---CCCcccchhHHHHHHHHHhCC
Q psy15438 87 --------HDPHILYTLSAVQIACLINR-EHELPVDKIVAYVSKLQQPDGSFFGDM---YGEVDTRFSFCAVACLSLLGK 154 (358)
Q Consensus 87 --------~~~~~~~Ty~Al~~L~ll~~-~~~~~~~~~~~~l~s~Q~~dGgf~~~~---~~esd~~~ty~al~~l~ll~~ 154 (358)
+.+|+++||+|+++|.+|++ .+.+|++++++||++||++||||+..+ ++|+|+|+||||++++.+|+.
T Consensus 80 ~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~ 159 (307)
T cd02895 80 LPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDD 159 (307)
T ss_pred cccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCC
Confidence 47999999999999999964 556899999999999999999999987 889999999999999999998
Q ss_pred CC--hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCC---hhcHHHHHHHHHhcCCCCCcccCCC
Q psy15438 155 LD--AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLH---EIDADKLAWWLAERQLPSGGLNGRP 229 (358)
Q Consensus 155 ~~--~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~---~~~~~~~~~wL~~~Q~~~GGf~gr~ 229 (358)
.+ .++++++++||++||++||||+..|+.|+|+++||||+++|.+++.++ .++.+++++||++||..+|||+|||
T Consensus 160 ~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~ 239 (307)
T cd02895 160 WSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP 239 (307)
T ss_pred CccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCC
Confidence 76 578999999999999999999999999999999999999999999875 6899999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCccccccccccccccccccccccc
Q psy15438 230 EKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRT 309 (358)
Q Consensus 230 ~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (358)
+|++|+|||||++++|++|++.+++|.+++++||++||++ ..|||
T Consensus 240 ~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~-----~~GGf------------------------------ 284 (307)
T cd02895 240 NKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQS-----LVGGF------------------------------ 284 (307)
T ss_pred CCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCC-----CCCCc------------------------------
Confidence 9999999999999999999999999999999999999987 57999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHhc
Q psy15438 310 CISDRPLDIPDPFHTLFGVAALTML 334 (358)
Q Consensus 310 ~~~~~p~~~~D~~hT~~~l~~Ls~~ 334 (358)
+++|++.||++||||+|+||+|+
T Consensus 285 --~~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 285 --AKNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred --CCCCCCCCChhHHHHHHHHHHhC
Confidence 99999999999999999999985
No 9
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.4e-69 Score=514.13 Aligned_cols=284 Identities=58% Similarity=1.076 Sum_probs=271.3
Q ss_pred cchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcC-CCCCcccccCCCCCchh
Q psy15438 14 FLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCI-HPCGGVSASISHDPHIL 92 (358)
Q Consensus 14 l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q-~~dGGF~~~~~~~~~~~ 92 (358)
|.++||++|+++++....|..+...|++|++.+||+|++|++|+.++.++++++++||++|| +++|||++.+++++|+.
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~ 80 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL 80 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence 57899999999999866688899999999999999999999999877788999999999999 78999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCC--hHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhc
Q psy15438 93 YTLSAVQIACLINREHELP--VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSC 170 (358)
Q Consensus 93 ~Ty~Al~~L~ll~~~~~~~--~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~ 170 (358)
+||+|+++|.+++.++.++ ++++++||+++|++||||.+.+++|+|+++||||++++.+++..+.++++++++||++|
T Consensus 81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~ 160 (287)
T cd02894 81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC 160 (287)
T ss_pred HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence 9999999999998777788 99999999999999999999999999999999999999999988888999999999999
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhCC
Q psy15438 171 CNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGR 250 (358)
Q Consensus 171 Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~ 250 (358)
|++||||+++|++|+|+++||||+++|.++++.+.++.+++++||.+||.++|||+|||+|.+|+|||||++++|+++++
T Consensus 161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~ 240 (287)
T cd02894 161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGR 240 (287)
T ss_pred CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHH
Q psy15438 251 GTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAA 330 (358)
Q Consensus 251 ~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~ 330 (358)
.+++|.+++++||++||+. +.||| +++|++.||+|||||+|++
T Consensus 241 ~~~~~~~~l~~~l~~~q~~-----~~GGf--------------------------------~~~p~~~~D~~ht~~~l~~ 283 (287)
T cd02894 241 LHWINKNKLKNFILACQDE-----EDGGF--------------------------------ADRPGNMVDVFHTFFGLAG 283 (287)
T ss_pred ccccCHHHHHHHHHHhcCC-----CCCCc--------------------------------CCCCCCCCChhHHHHHHHH
Confidence 9999999999999999975 47999 8999999999999999999
Q ss_pred HHhc
Q psy15438 331 LTML 334 (358)
Q Consensus 331 Ls~~ 334 (358)
|||+
T Consensus 284 Lsl~ 287 (287)
T cd02894 284 LSLL 287 (287)
T ss_pred HHhC
Confidence 9986
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=9.1e-64 Score=474.13 Aligned_cols=281 Identities=45% Similarity=0.807 Sum_probs=264.8
Q ss_pred hHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcC-CCCCcccccCCCCCchhH
Q psy15438 16 GTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCI-HPCGGVSASISHDPHILY 93 (358)
Q Consensus 16 ~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q-~~dGGF~~~~~~~~~~~~ 93 (358)
++||++||++++... |..+...|++++|.+||+|++|.+|+. .+..+++++++||++|| +++|||++.++.++|+..
T Consensus 1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~ 79 (286)
T cd02890 1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS 79 (286)
T ss_pred ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence 489999999998755 788888999999999999999999997 56678999999999999 999999999989999999
Q ss_pred HHHHHHHHHHhcc--cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcc
Q psy15438 94 TLSAVQIACLINR--EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171 (358)
Q Consensus 94 Ty~Al~~L~ll~~--~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q 171 (358)
||+|+++|.+++. .+.++++++++||.++|++||||...+++++|+++||||++++.++|....++++++++||++||
T Consensus 80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999987 57789999999999999999999999999999999999999999999876789999999999999
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCC-cccCCCCCCCChhHHHHHHHHHHHhCC
Q psy15438 172 NFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSG-GLNGRPEKLPDVCYSWWVLASLHMLGR 250 (358)
Q Consensus 172 ~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~G-Gf~gr~~k~~D~cys~w~~a~L~ll~~ 250 (358)
++||||+.+|++|+|+++||||+++|.+++..+.++++++++||.+||..+| ||+|||+|.+|+|||||++++|++|++
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~ 239 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR 239 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccc
Confidence 9999999999999999999999999999999888899999999999999887 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHH
Q psy15438 251 GTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAA 330 (358)
Q Consensus 251 ~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~ 330 (358)
..++|.+++.+||+++|+. +.||| +++|++.||+|||||+|++
T Consensus 240 ~~~~~~~~l~~~l~~~~q~-----~~Ggf--------------------------------~~~~~~~~d~~~T~~~l~~ 282 (286)
T cd02890 240 LHLIDQEKLREYILSCQQS-----EVGGF--------------------------------SDKPGKPPDLYHTYYGLSG 282 (286)
T ss_pred ccccCHHHHHHHHHhhcCC-----CCCCc--------------------------------CCCCCCCCCchhHHHHHHH
Confidence 8889999999999965555 47999 8999999999999999999
Q ss_pred HHhc
Q psy15438 331 LTML 334 (358)
Q Consensus 331 Ls~~ 334 (358)
|+++
T Consensus 283 lsl~ 286 (286)
T cd02890 283 LSLL 286 (286)
T ss_pred HHcC
Confidence 9985
No 11
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=1.2e-47 Score=366.42 Aligned_cols=234 Identities=22% Similarity=0.338 Sum_probs=214.6
Q ss_pred ccchHHHHHHHHHhh----cCCCCcccccc------------ccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcC
Q psy15438 13 EFLGTKHAEYIKKYS----DNKEDYEYCMS------------EYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCI 75 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~----~~~~~~~~~~~------------~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q 75 (358)
..++++.++||.+++ .+ .++|... +..+++.+|||+++|.+|+. .+.++|+++++||++||
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~--~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q 125 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLP--RGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQ 125 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCC--CCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhC
Confidence 678899999999998 53 3344331 46899999999999999985 34578999999999999
Q ss_pred CCCCcccccC---CCCCchhHHHHHHHHHHHhcccC--CCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHH
Q psy15438 76 HPCGGVSASI---SHDPHILYTLSAVQIACLINREH--ELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLS 150 (358)
Q Consensus 76 ~~dGGF~~~~---~~~~~~~~Ty~Al~~L~ll~~~~--~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ 150 (358)
++||||++.+ +.++|+..||+|+++|.+|+..+ .+|++++++||.+||++||||+..|++|+|.++||||+++|.
T Consensus 126 ~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~ 205 (307)
T cd02895 126 LPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLS 205 (307)
T ss_pred CCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHH
Confidence 9999999987 78999999999999999998765 589999999999999999999999999999999999999999
Q ss_pred HhCCCC---hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC-CCCccc
Q psy15438 151 LLGKLD---AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL-PSGGLN 226 (358)
Q Consensus 151 ll~~~~---~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~-~~GGf~ 226 (358)
+||.++ .++.+++++||.+||+.+|||+++|++++|++||||++++|++|++.+.+|.+++.+||+++|. .+|||+
T Consensus 206 lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~ 285 (307)
T cd02895 206 LLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFA 285 (307)
T ss_pred HcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcC
Confidence 999865 6899999999999999999999999999999999999999999999888999999999999875 589999
Q ss_pred CCCCCCCChhHHHHHHHHHHHh
Q psy15438 227 GRPEKLPDVCYSWWVLASLHML 248 (358)
Q Consensus 227 gr~~k~~D~cys~w~~a~L~ll 248 (358)
++|++.+|++||||++++|+++
T Consensus 286 ~~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 286 KNPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCCCChhHHHHHHHHHHhC
Confidence 9999999999999999999875
No 12
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=2.8e-47 Score=361.49 Aligned_cols=235 Identities=26% Similarity=0.353 Sum_probs=216.4
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccc--cchHHHHHHHHHHHHHhCCCCCCC--hHHHHHHHHhcCCCCCcccccCCCC
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMSE--YLRMSGMYWGITTLSLLDQLDDMP--QDTIFDFITQCIHPCGGVSASISHD 88 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~~--~~~~~~~y~~l~~L~lL~~~~~~~--~~~~i~~i~~~q~~dGGF~~~~~~~ 88 (358)
.+++++|++||++++.. .+++|...+ ..++..||.++.+|.+++.++.++ ++++++||++||+++|||++.++.+
T Consensus 48 ~~~~~~~i~fl~~~q~~-~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e 126 (287)
T cd02894 48 RLNREEIIEFVKSCQDN-EDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGE 126 (287)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCC
Confidence 56899999999999842 244554332 457888999999999998666666 9999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHH
Q psy15438 89 PHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFIL 168 (358)
Q Consensus 89 ~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~ 168 (358)
+|+.+||+|+++|.+++..+.++++++++||.++|++||||...+++|+|+++||||+++|.++|..+..+++++++||.
T Consensus 127 ~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~ 206 (287)
T cd02894 127 VDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLC 206 (287)
T ss_pred chHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHH
Confidence 99999999999999998777889999999999999999999999999999999999999999999988889999999999
Q ss_pred hcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcC-CCCCcccCCCCCCCChhHHHHHHHHHHH
Q psy15438 169 SCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQ-LPSGGLNGRPEKLPDVCYSWWVLASLHM 247 (358)
Q Consensus 169 s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q-~~~GGf~gr~~k~~D~cys~w~~a~L~l 247 (358)
+||+++|||+++|++++|++||||++++|++++..+.+|.+++.+||+++| .++|||+++|+|.+|+|||||++++|++
T Consensus 207 ~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~Lsl 286 (287)
T cd02894 207 ERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSL 286 (287)
T ss_pred HhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHHHh
Confidence 999999999999999999999999999999999988889999999999999 4789999999999999999999999988
Q ss_pred h
Q psy15438 248 L 248 (358)
Q Consensus 248 l 248 (358)
|
T Consensus 287 ~ 287 (287)
T cd02894 287 L 287 (287)
T ss_pred C
Confidence 5
No 13
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=4.5e-47 Score=363.64 Aligned_cols=238 Identities=18% Similarity=0.323 Sum_probs=223.1
Q ss_pred CCChHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccc
Q psy15438 61 DMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTR 140 (358)
Q Consensus 61 ~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~ 140 (358)
...++++++|+.++|+.++.|........++..+|+++.+|.+|+.++.++++++++||.+||++||||++.++.++|++
T Consensus 7 ~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~ 86 (316)
T PLN03201 7 ELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPHIL 86 (316)
T ss_pred hccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCcccHH
Confidence 35689999999999998888875433446777899999999999988888999999999999999999999998899999
Q ss_pred hhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC
Q psy15438 141 FSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL 220 (358)
Q Consensus 141 ~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~ 220 (358)
+||+|+.+|.+++.++.++++++++||.++|++||||++.+++|+|+++||||+++|.+++..+.++++++++||.+||+
T Consensus 87 ~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~ 166 (316)
T PLN03201 87 YTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKN 166 (316)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC
Confidence 99999999999988878899999999999999999999999999999999999999999998878899999999999999
Q ss_pred CCCcccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccc
Q psy15438 221 PSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNR 300 (358)
Q Consensus 221 ~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~ 300 (358)
+||||+++|++++|.+||||++++|++++..+.+|.+.+++||..||.. .|||
T Consensus 167 ~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~------~GGf--------------------- 219 (316)
T PLN03201 167 FDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVK------SGGL--------------------- 219 (316)
T ss_pred CCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCC------CCCc---------------------
Confidence 9999999999999999999999999999998889999999999999987 5999
Q ss_pred cccccccccccCCCCCCCCChHHHHHHHHHHHhcCC
Q psy15438 301 IEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDP 336 (358)
Q Consensus 301 ~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~ 336 (358)
.++|+|.||.+||||++++|++++.
T Consensus 220 -----------~grp~k~~D~cys~w~~a~L~ll~~ 244 (316)
T PLN03201 220 -----------NGRPEKLPDVCYSWWVLSSLIIIDR 244 (316)
T ss_pred -----------CCCCCCCCchHHHHHHHHHHHHhcc
Confidence 8999999999999999999999976
No 14
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=1.3e-46 Score=358.33 Aligned_cols=234 Identities=21% Similarity=0.332 Sum_probs=217.1
Q ss_pred hHHHHHHHHhcCC-CCCcccccCCCCCchhHHHHHHHHHHHhcc-cCCCChHHHHHHHHhcCCCCCCcccccCCCcccch
Q psy15438 64 QDTIFDFITQCIH-PCGGVSASISHDPHILYTLSAVQIACLINR-EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRF 141 (358)
Q Consensus 64 ~~~~i~~i~~~q~-~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~-~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ 141 (358)
++++++|++++.. .+++|...++ +++..||+++.+|.+|+. +..++++++++||.++|++||||.+.++.++|+++
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~d~--~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~ 78 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSLDA--SRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT 78 (299)
T ss_pred ChHHHHHHHHHhhcCCcccccccc--ccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence 5789999999876 5677776654 578889999999999986 66678899999999999999999999999999999
Q ss_pred hHHHHHHHHHhCC---CChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhc
Q psy15438 142 SFCAVACLSLLGK---LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218 (358)
Q Consensus 142 ty~al~~l~ll~~---~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~ 218 (358)
||+|+.+|.+++. .+.++.+++++||++||++||||+..|++|+|.++||||++++.+++..+..+++++++||.+|
T Consensus 79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c 158 (299)
T cd02893 79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC 158 (299)
T ss_pred HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence 9999999999986 4567889999999999999999999999999999999999999999987777899999999999
Q ss_pred CCCCCcccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccc
Q psy15438 219 QLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVR 298 (358)
Q Consensus 219 Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~ 298 (358)
|+.+|||+++|++++|+|||||++++|++|++.+.+|.+++++||++||++ ..|||
T Consensus 159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~-----~~GGf------------------- 214 (299)
T cd02893 159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMR-----FEGGF------------------- 214 (299)
T ss_pred CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCC-----CCCCc-------------------
Confidence 999999999999999999999999999999998889999999999999987 57999
Q ss_pred cccccccccccccCCCCCCCCChHHHHHHHHHHHhcCC
Q psy15438 299 NRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDP 336 (358)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~ 336 (358)
.++|+|.||++||||++++|++++.
T Consensus 215 -------------~grp~k~~D~cys~w~~a~l~ll~~ 239 (299)
T cd02893 215 -------------QGRTNKLVDGCYSFWVGGSLPILEA 239 (299)
T ss_pred -------------CCCCCCCCccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999975
No 15
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.3e-45 Score=362.08 Aligned_cols=236 Identities=17% Similarity=0.275 Sum_probs=216.4
Q ss_pred CCChHHHHHHHHhcCCCC-CcccccCCCCCchhHHHHHHHHHHHhcc-cCCCChHHHHHHHHhcCCCCCCcccccCCCcc
Q psy15438 61 DMPQDTIFDFITQCIHPC-GGVSASISHDPHILYTLSAVQIACLINR-EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVD 138 (358)
Q Consensus 61 ~~~~~~~i~~i~~~q~~d-GGF~~~~~~~~~~~~Ty~Al~~L~ll~~-~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd 138 (358)
...++++++|++++-..- ..|... ..+.++.||+++.+|.+|+. ++..+++++++||.+||++||||++.|+.++|
T Consensus 43 ~l~~~~H~~yl~~~l~~lp~~~~~l--Da~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~h 120 (439)
T PLN02710 43 ELWREKHLEYLTRGLRQLGPSFSVL--DANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH 120 (439)
T ss_pred cccHHHHHHHHHHHhhcCChhhhhh--hhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCcc
Confidence 467999999999876432 223322 23678899999999999986 67778999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhCC---CChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHH
Q psy15438 139 TRFSFCAVACLSLLGK---LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWL 215 (358)
Q Consensus 139 ~~~ty~al~~l~ll~~---~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL 215 (358)
+++||+|+.+|.+||. ++.++++++++||++||++||||+..+++|+|+.+||||++++.+++.++..+++++++||
T Consensus 121 l~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I 200 (439)
T PLN02710 121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYI 200 (439)
T ss_pred HHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHH
Confidence 9999999999999985 4567999999999999999999999999999999999999999999988888899999999
Q ss_pred HhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCccccccccc
Q psy15438 216 AERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCT 295 (358)
Q Consensus 216 ~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~ 295 (358)
++||+.+|||+++|++++|+|||||++++|++|++.+.+|.+++++||++||+. .|||
T Consensus 201 ~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~------~GGF---------------- 258 (439)
T PLN02710 201 LSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGV------EGGF---------------- 258 (439)
T ss_pred HHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCc------CCCc----------------
Confidence 999999999999999999999999999999999999899999999999999987 5999
Q ss_pred ccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCC
Q psy15438 296 QVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDP 336 (358)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~ 336 (358)
.+||+|.+|.+||||++++|+|++.
T Consensus 259 ----------------~GR~nKl~D~CYSfW~~a~L~lL~~ 283 (439)
T PLN02710 259 ----------------QGRTNKLVDGCYSFWQGGVFALLQQ 283 (439)
T ss_pred ----------------CCCCCCCCCchhhHHHHHHHHHHHH
Confidence 8999999999999999999999975
No 16
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=2.4e-44 Score=341.20 Aligned_cols=236 Identities=24% Similarity=0.446 Sum_probs=218.7
Q ss_pred ccchHHHHHHHHHhh-cCCCCccccccccchHHHHHHHHHHHHHhCC--CCCCChHHHHHHHHhcCCCCCcccccCCCCC
Q psy15438 13 EFLGTKHAEYIKKYS-DNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ--LDDMPQDTIFDFITQCIHPCGGVSASISHDP 89 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~-~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~--~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~ 89 (358)
..+++++++||++++ +....+++...+.+++..||+++.+|.+++. .+.++++++++||.++|+++|||+..++.++
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~ 125 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV 125 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence 568999999999999 7554444444567899999999999999997 4677899999999999999999999888899
Q ss_pred chhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHh
Q psy15438 90 HILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILS 169 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s 169 (358)
|+..||+|+++|.+++.....+++++++||.++|++||||+..|++|+|+++||||+++|.+++..+.++++++++||.+
T Consensus 126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~ 205 (286)
T cd02890 126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE 205 (286)
T ss_pred hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 99999999999999987767899999999999999999999999999999999999999999999888999999999999
Q ss_pred cccCCC-CCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHH-hcCCCCCcccCCCCCCCChhHHHHHHHHHHH
Q psy15438 170 CCNFDG-GFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLA-ERQLPSGGLNGRPEKLPDVCYSWWVLASLHM 247 (358)
Q Consensus 170 ~Q~~dG-Gf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~-~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~l 247 (358)
||+.+| ||+++|++++|++||||++++|.+++....++.+++.+||. .+|.++|||+++|++.+|+|||||++++|++
T Consensus 206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~lsl 285 (286)
T cd02890 206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGLSL 285 (286)
T ss_pred hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHHHc
Confidence 999987 99999999999999999999999999887789999999999 6788899999999999999999999999987
Q ss_pred h
Q psy15438 248 L 248 (358)
Q Consensus 248 l 248 (358)
+
T Consensus 286 ~ 286 (286)
T cd02890 286 L 286 (286)
T ss_pred C
Confidence 4
No 17
>KOG0366|consensus
Probab=100.00 E-value=3.4e-40 Score=295.45 Aligned_cols=237 Identities=21% Similarity=0.305 Sum_probs=223.3
Q ss_pred ccchHHHHHHHHHhhcCCCCcccccc--ccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCCCCCc
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMS--EYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPH 90 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~--~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~ 90 (358)
.+.+|+.+.|+++|+.+ .++|... -.+++..|..|++.|++....+..++++++.||...|++||.|.+....+-+
T Consensus 65 ~~~~eeiv~~v~~C~~~--~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvD 142 (329)
T KOG0366|consen 65 RMSREEIVSFVLSCQHE--DGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVD 142 (329)
T ss_pred hhhHHHHHHHHHheecC--CCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccc
Confidence 56799999999999984 3455332 2467888999999999999888899999999999999999999998878889
Q ss_pred hhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhc
Q psy15438 91 ILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSC 170 (358)
Q Consensus 91 ~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~ 170 (358)
.+.+|+|+++|.+|+.++.++++++++|+++|.|-||||+..|+.|||...+||++.+|+++|+++..+.+.+-.||..+
T Consensus 143 TRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceR 222 (329)
T KOG0366|consen 143 TRFSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCER 222 (329)
T ss_pred hhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC-CCCcccCCCCCCCChhHHHHHHHHHHHhC
Q psy15438 171 CNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL-PSGGLNGRPEKLPDVCYSWWVLASLHMLG 249 (358)
Q Consensus 171 Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~-~~GGf~gr~~k~~D~cys~w~~a~L~ll~ 249 (358)
|-+.||.+++|.+-+|++|+||++++|+++|+++++|.+++.+|++.+|. +.|||+.||+..+|+.||+.++|+|++||
T Consensus 223 Q~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg 302 (329)
T KOG0366|consen 223 QLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLG 302 (329)
T ss_pred cCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhC
Confidence 99999999999999999999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred CC
Q psy15438 250 RG 251 (358)
Q Consensus 250 ~~ 251 (358)
..
T Consensus 303 ~~ 304 (329)
T KOG0366|consen 303 YP 304 (329)
T ss_pred CC
Confidence 75
No 18
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=297.46 Aligned_cols=239 Identities=23% Similarity=0.388 Sum_probs=215.6
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHhcCCCCCcccccCCCCC
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL---DDMPQDTIFDFITQCIHPCGGVSASISHDP 89 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~ 89 (358)
...+|+-+-|+..+.....+++-......++..||++|++|.+++.+ +.++|+++.+||.++|+|||+|......+.
T Consensus 74 ~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gev 153 (342)
T COG5029 74 TVDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEV 153 (342)
T ss_pred hhhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcc
Confidence 45667777777777664323222233457899999999999999854 446788899999999999999999887888
Q ss_pred chhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhc-HHHHHHHHH
Q psy15438 90 HILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAIN-LSKAVEFIL 168 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~-~~~~v~~L~ 168 (358)
|.+..|+|+.+|.++++++..+.+..++||++|||.||||+..|+.|+|..+||||+++|++|+.++..+ +|+++.||.
T Consensus 154 Dtr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~ 233 (342)
T COG5029 154 DTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLA 233 (342)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 8889999999999999998899999999999999999999999999999999999999999999998888 799999999
Q ss_pred hcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCC-CCcccCCCCCCCChhHHHHHHHHHHH
Q psy15438 169 SCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPDVCYSWWVLASLHM 247 (358)
Q Consensus 169 s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~-~GGf~gr~~k~~D~cys~w~~a~L~l 247 (358)
++|-..|||++|+++.+|++|.||++++|+++++.+.+|.+++.+||+.||.+ .|||+.||++.+|+.||.+++++|++
T Consensus 234 ~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl 313 (342)
T COG5029 234 ERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313 (342)
T ss_pred HcccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998776 99999999999999999999999999
Q ss_pred hCCC
Q psy15438 248 LGRG 251 (358)
Q Consensus 248 l~~~ 251 (358)
++..
T Consensus 314 ~~~k 317 (342)
T COG5029 314 IEYK 317 (342)
T ss_pred hccC
Confidence 9865
No 19
>KOG0367|consensus
Probab=100.00 E-value=2.5e-37 Score=281.50 Aligned_cols=239 Identities=22% Similarity=0.357 Sum_probs=215.4
Q ss_pred ccchHHHHHHHHHhhcCCC---C---cccc------------ccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHh
Q psy15438 13 EFLGTKHAEYIKKYSDNKE---D---YEYC------------MSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQ 73 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~---~---~~~~------------~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~ 73 (358)
..+++.|++||.+.+..+. . .+|. ..+..++..||.++..|.+||. ++.+||+.+++++..
T Consensus 57 ~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~ 136 (347)
T KOG0367|consen 57 SVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSA 136 (347)
T ss_pred ccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHH
Confidence 3458999999999875431 1 1221 1234688999999999999996 577899999999999
Q ss_pred cCCCCCcccccC-CCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHh
Q psy15438 74 CIHPCGGVSASI-SHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLL 152 (358)
Q Consensus 74 ~q~~dGGF~~~~-~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll 152 (358)
||.+||.|.... |.++|++..|+|+++..+|+.++.+|.++++.||+++|+.||||+..|++|+|..+||||+++|+|+
T Consensus 137 ~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~ 216 (347)
T KOG0367|consen 137 CQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALM 216 (347)
T ss_pred hcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHH
Confidence 999999998764 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCC-CCcc
Q psy15438 153 GKL------DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGL 225 (358)
Q Consensus 153 ~~~------~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~-~GGf 225 (358)
+.+ +..+++++++|+..+|..+|||.+++++.+|.+|+||..++|.+|+....+|.+++..||..+|.+ -|||
T Consensus 217 ~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGF 296 (347)
T KOG0367|consen 217 GKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGF 296 (347)
T ss_pred hhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcc
Confidence 875 234689999999999999999999999999999999999999999998888999999999999987 5999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhCCC
Q psy15438 226 NGRPEKLPDVCYSWWVLASLHMLGRG 251 (358)
Q Consensus 226 ~gr~~k~~D~cys~w~~a~L~ll~~~ 251 (358)
+..|+..+|+.|||..+++|++++..
T Consensus 297 sK~P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 297 SKWPEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred cCCCccCchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999875
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=100.00 E-value=2.6e-32 Score=255.13 Aligned_cols=276 Identities=32% Similarity=0.472 Sum_probs=235.1
Q ss_pred HHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC------CCCChHHHHHHHHhcCCCCCcccccCCC-CC
Q psy15438 17 TKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL------DDMPQDTIFDFITQCIHPCGGVSASISH-DP 89 (358)
Q Consensus 17 ~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~------~~~~~~~~i~~i~~~q~~dGGF~~~~~~-~~ 89 (358)
++|++||.+.+... +..+......+++.+++++.++..++.. .....+++++||.++|+++|||+...+. .+
T Consensus 2 ~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~ 80 (300)
T cd00688 2 EKHLKYLLRYPYGD-GHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYP 80 (300)
T ss_pred hhHHHHHHHccccC-CCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCc
Confidence 68999999987632 2222333567889999999999998752 2245789999999999999999988766 79
Q ss_pred chhHHHHHHHHHHHhcc---cCCCChHHHHHHHHhcCCCCCCcccccCC-------CcccchhHHHHHHHHHhCCCC-hh
Q psy15438 90 HILYTLSAVQIACLINR---EHELPVDKIVAYVSKLQQPDGSFFGDMYG-------EVDTRFSFCAVACLSLLGKLD-AI 158 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~---~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~-------esd~~~ty~al~~l~ll~~~~-~~ 158 (358)
++..|+.++.+|..++. .....++++++||.++|++||||...... .++...|++++.+|.+++... ..
T Consensus 81 ~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~ 160 (300)
T cd00688 81 SLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDP 160 (300)
T ss_pred chHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH
Confidence 99999999999999875 34456889999999999999999876443 689999999999999998743 56
Q ss_pred cHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCC---CCCCCh
Q psy15438 159 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRP---EKLPDV 235 (358)
Q Consensus 159 ~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~---~k~~D~ 235 (358)
.++++++||.++|+.|||| .++.+++...|+|++.+|..++.......+++++||.++|..+|||.... .+.+|.
T Consensus 161 ~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~ 238 (300)
T cd00688 161 LIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDS 238 (300)
T ss_pred HHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCch
Confidence 8899999999999999999 67778999999999999999987545568899999999999999999875 789999
Q ss_pred hHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCC
Q psy15438 236 CYSWWVLASLHMLGRG-TWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDR 314 (358)
Q Consensus 236 cys~w~~a~L~ll~~~-~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (358)
++++|++.+|..++.. .....+++.+||++.|+. +||| ..+
T Consensus 239 ~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~------~G~w--------------------------------~~~ 280 (300)
T cd00688 239 CYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNE------DGGF--------------------------------SSK 280 (300)
T ss_pred HHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCC------CCCc--------------------------------CcC
Confidence 9999999999998863 334679999999998887 6999 788
Q ss_pred CCCCCChHHHHHHHHHHHh
Q psy15438 315 PLDIPDPFHTLFGVAALTM 333 (358)
Q Consensus 315 p~~~~D~~hT~~~l~~Ls~ 333 (358)
|.+.+|.+||+++|.+|+.
T Consensus 281 ~~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 281 PGKSYDTQHTVFALLALSL 299 (300)
T ss_pred CCCCCcchhhHHHHHHHhc
Confidence 8999999999999999985
No 21
>KOG0365|consensus
Probab=100.00 E-value=3.2e-32 Score=252.49 Aligned_cols=236 Identities=20% Similarity=0.366 Sum_probs=206.6
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHhcCCCCCcccccCCCCCch
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL---DDMPQDTIFDFITQCIHPCGGVSASISHDPHI 91 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~ 91 (358)
-.++.+.|+.+++.....++-......++..||-++++|.+++.. +.++|+++.+||.++.++||||....+.+.|+
T Consensus 121 v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~Dv 200 (423)
T KOG0365|consen 121 VKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDV 200 (423)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchH
Confidence 467899999999875433333334567899999999999999953 56899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcc
Q psy15438 92 LYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q 171 (358)
+..|+|+++..+++-....-.+...+||.+||+.+|||++.|+-|.|..+|||+++++.+|+..+..|.+++.+|..++|
T Consensus 201 Rs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQ 280 (423)
T KOG0365|consen 201 RSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQ 280 (423)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhh
Confidence 99999999999998543334678899999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCCCCCCCCCcccHHHHHHHHHHhcccC-----C-----hhcHHHHHHHHH-hcCCCCCcccCCCCCCCChhHHH
Q psy15438 172 N-FDGGFGSRPGSESHAGLTYCCVGFLSITGHL-----H-----EIDADKLAWWLA-ERQLPSGGLNGRPEKLPDVCYSW 239 (358)
Q Consensus 172 ~-~dGGf~~~pg~esh~~~T~calasL~llg~~-----~-----~~~~~~~~~wL~-~~Q~~~GGf~gr~~k~~D~cys~ 239 (358)
. .+|||.++.++-.|++|+||.-++..++.+. + ..+.+.+.+|++ .||.++|||...|+|+.|.+||.
T Consensus 281 m~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTC 360 (423)
T KOG0365|consen 281 MRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTC 360 (423)
T ss_pred hhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhh
Confidence 7 7999999999999999999998888777542 1 247888999975 56999999999999999999999
Q ss_pred HHHHHHHHhCC
Q psy15438 240 WVLASLHMLGR 250 (358)
Q Consensus 240 w~~a~L~ll~~ 250 (358)
|++..|++...
T Consensus 361 YcLsGLSiAq~ 371 (423)
T KOG0365|consen 361 YCLSGLSIAQH 371 (423)
T ss_pred hHhcchhHHhh
Confidence 99999986543
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.95 E-value=2.3e-26 Score=214.89 Aligned_cols=234 Identities=24% Similarity=0.305 Sum_probs=200.0
Q ss_pred cccchHHHHHHHHHhhcCCCCccccccc-cchHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHhcCCCCCcccccCCC
Q psy15438 12 KEFLGTKHAEYIKKYSDNKEDYEYCMSE-YLRMSGMYWGITTLSLLDQL---DDMPQDTIFDFITQCIHPCGGVSASISH 87 (358)
Q Consensus 12 ~~l~~~~h~~yl~~~~~~~~~~~~~~~~-~~~~~~~y~~l~~L~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~~~~ 87 (358)
....++++++||.+.+.....+++.... ..+++.|++++.+|..++.. .....+++++||.++|+++|||......
T Consensus 50 ~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 50 ADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred chHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 4567899999999988754444444333 67899999999999999863 2345788999999999999999876543
Q ss_pred -------CCchhHHHHHHHHHHHhcccC-CCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhc
Q psy15438 88 -------DPHILYTLSAVQIACLINREH-ELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAIN 159 (358)
Q Consensus 88 -------~~~~~~Ty~Al~~L~ll~~~~-~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~ 159 (358)
.+++..|+.++.+|.+++... ..+++++++||.++|++|||| .+++++++..|++++.+|.+++......
T Consensus 130 ~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~ 207 (300)
T cd00688 130 NHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPD 207 (300)
T ss_pred CCcccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHH
Confidence 688999999999999987543 457899999999999999999 5778899999999999999998755678
Q ss_pred HHHHHHHHHhcccCCCCCCCCC---CCCCcccHHHHHHHHHHhcccC-ChhcHHHHHHHHHhcCCCCCcccCCCCCCCCh
Q psy15438 160 LSKAVEFILSCCNFDGGFGSRP---GSESHAGLTYCCVGFLSITGHL-HEIDADKLAWWLAERQLPSGGLNGRPEKLPDV 235 (358)
Q Consensus 160 ~~~~v~~L~s~Q~~dGGf~~~p---g~esh~~~T~calasL~llg~~-~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~ 235 (358)
++++++||.++|..+|||...+ ..+++..+|++++.+|..++.. .....+++++||+++|..+|||.+++.+.+|+
T Consensus 208 ~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~ 287 (300)
T cd00688 208 AKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDT 287 (300)
T ss_pred HHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcc
Confidence 9999999999999999999875 6788999999999999988764 34568899999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q psy15438 236 CYSWWVLASLHM 247 (358)
Q Consensus 236 cys~w~~a~L~l 247 (358)
++|+|++.+|..
T Consensus 288 ~~t~~al~aL~~ 299 (300)
T cd00688 288 QHTVFALLALSL 299 (300)
T ss_pred hhhHHHHHHHhc
Confidence 999999998864
No 23
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.91 E-value=4.5e-23 Score=200.24 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=192.3
Q ss_pred HHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHhcC--------------CCCCc
Q psy15438 17 TKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL--DDMPQDTIFDFITQCI--------------HPCGG 80 (358)
Q Consensus 17 ~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~--~~~~~~~~i~~i~~~q--------------~~dGG 80 (358)
++-++||.+.|.. .+.+..+.+.++.|.+++.+|...+.. .....+++++||.+.| .++||
T Consensus 2 ~~~~~~L~~~Q~~---dG~W~~~~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 2 RRALDFLLSLQAP---DGHWPGEYSQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred chHHHHHHHhccC---CCCccccCCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 6789999999874 233333338889999999999988863 2234689999999999 68999
Q ss_pred ccccCC--CCCchhHHHHHHHHHHHhcccC-------CCChHHHHHHHHhcCCCCCCcccccC-----------------
Q psy15438 81 VSASIS--HDPHILYTLSAVQIACLINREH-------ELPVDKIVAYVSKLQQPDGSFFGDMY----------------- 134 (358)
Q Consensus 81 F~~~~~--~~~~~~~Ty~Al~~L~ll~~~~-------~~~~~~~~~~l~s~Q~~dGgf~~~~~----------------- 134 (358)
|+.... ..++...|..++.+|..++... ...++++++||.++|++||||.....
T Consensus 79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~ 158 (348)
T cd02889 79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDI 158 (348)
T ss_pred CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCC
Confidence 886542 2356668877888887776432 22467899999999999999985321
Q ss_pred --CCcccchhHHHHHHHHHhCCCCh-------hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccC-C
Q psy15438 135 --GEVDTRFSFCAVACLSLLGKLDA-------INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL-H 204 (358)
Q Consensus 135 --~esd~~~ty~al~~l~ll~~~~~-------~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~-~ 204 (358)
..+++..|..++.+|..++.... ..++++++||+++|++||||....+ ..+...|.+++.+|..+|.. .
T Consensus 159 ~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~ 237 (348)
T cd02889 159 MIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWG-VCFIYGTWFALEALAAAGEDEN 237 (348)
T ss_pred ccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCC-CcchHHHHHHHHHHHHcCCCcC
Confidence 12456667788888887776322 3578999999999999999975443 23555678888888888763 2
Q ss_pred hhcHHHHHHHHHhcCCCCCcccCC----------CCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCcc
Q psy15438 205 EIDADKLAWWLAERQLPSGGLNGR----------PEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYF 274 (358)
Q Consensus 205 ~~~~~~~~~wL~~~Q~~~GGf~gr----------~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~ 274 (358)
...++++++||.++|.++|||... +...+|+..|.|++.+|...+..+....+++.+||.++|++
T Consensus 238 ~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~----- 312 (348)
T cd02889 238 SPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQE----- 312 (348)
T ss_pred cHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-----
Confidence 346788999999999999999763 23467899999999999888765444578889999999998
Q ss_pred ccCCc
Q psy15438 275 EMGVF 279 (358)
Q Consensus 275 ~~GGf 279 (358)
+|||
T Consensus 313 -dG~f 316 (348)
T cd02889 313 -DGDW 316 (348)
T ss_pred -CCCc
Confidence 6999
No 24
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.90 E-value=2.7e-22 Score=208.33 Aligned_cols=258 Identities=17% Similarity=0.146 Sum_probs=189.5
Q ss_pred chHHHHHHHHHhhcCCCCccc-cccccchHHHHHHHHHHHHHhCCCCC---CChHHHHHHHHhcCC--------------
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEY-CMSEYLRMSGMYWGITTLSLLDQLDD---MPQDTIFDFITQCIH-------------- 76 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~-~~~~~~~~~~~y~~l~~L~lL~~~~~---~~~~~~i~~i~~~q~-------------- 76 (358)
...||+++|.+.+-..++.+. .+.-.+..|.|-+++.+|...+..+. ...+++.+||+++|.
T Consensus 277 ~~~k~l~~l~~~~~~~~~~g~~~q~~~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~ 356 (634)
T TIGR03463 277 EVAAHLEGLEDYRYEDDDRGLRYNGYNSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP 356 (634)
T ss_pred HHHHHHHHHHhhEEEcCCCCEEEeeCCCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence 578999999987643323122 22112455999999999987663221 224689999999994
Q ss_pred CCCcccccC--CCCCchhHHHHHHHHHHHhccc--------CCCChHHHHHHHHhcCCCCCCcccccC------------
Q psy15438 77 PCGGVSASI--SHDPHILYTLSAVQIACLINRE--------HELPVDKIVAYVSKLQQPDGSFFGDMY------------ 134 (358)
Q Consensus 77 ~dGGF~~~~--~~~~~~~~Ty~Al~~L~ll~~~--------~~~~~~~~~~~l~s~Q~~dGgf~~~~~------------ 134 (358)
+.|||+... ...|+...|-.++.+|..+... +....+++++||+++||+||||+....
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~ 436 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP 436 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence 578888764 4568889998788887765431 112356889999999999999994321
Q ss_pred ---------CCcccchhHHHHHHHHHhCCCCh--------hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHH
Q psy15438 135 ---------GEVDTRFSFCAVACLSLLGKLDA--------INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFL 197 (358)
Q Consensus 135 ---------~esd~~~ty~al~~l~ll~~~~~--------~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL 197 (358)
..+.+..|..++.+|..++...+ ..++++++||++.|++||||.+..+. .....|++|+.+|
T Consensus 437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~-~~~Y~T~~al~aL 515 (634)
T TIGR03463 437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGV-CFTYGTFHGVMGL 515 (634)
T ss_pred HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCC-CCcHHHHHHHHHH
Confidence 12344455566667766654221 24789999999999999999877663 3444689999999
Q ss_pred HhcccC-ChhcHHHHHHHHHhcCCCCCcccCCC----------CCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Q psy15438 198 SITGHL-HEIDADKLAWWLAERQLPSGGLNGRP----------EKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILAS 266 (358)
Q Consensus 198 ~llg~~-~~~~~~~~~~wL~~~Q~~~GGf~gr~----------~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~ 266 (358)
..+|.. ....++++++||+++|++||||.++. +..+++..|.|++.+|...|.......++.++||++.
T Consensus 516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSR 595 (634)
T ss_pred HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 988863 34568999999999999999998642 3357789999999999998865444578999999999
Q ss_pred cCCCCCccccCCc
Q psy15438 267 QVRNTFYFEMGVF 279 (358)
Q Consensus 267 Q~~~~~~~~~GGf 279 (358)
|++ +||+
T Consensus 596 Q~~------dG~W 602 (634)
T TIGR03463 596 QQE------DGRW 602 (634)
T ss_pred CCC------CCCC
Confidence 998 6999
No 25
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.90 E-value=1.2e-21 Score=203.44 Aligned_cols=259 Identities=17% Similarity=0.095 Sum_probs=189.1
Q ss_pred cchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCC-------------CCC
Q psy15438 14 FLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIH-------------PCG 79 (358)
Q Consensus 14 l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~-------------~dG 79 (358)
-.+.||+++|.+.....++........+.+|.|-+++.+|...|- .+.....++.+||+++|. +.|
T Consensus 287 ~~~~~~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~G 366 (635)
T TIGR01507 287 AFIKLGWEGIDLYGVELDDSWMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPG 366 (635)
T ss_pred HHHHHHHHHHHHheEecCCceEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCC
Confidence 357789999988755432222222235789999999999998883 223346899999999972 368
Q ss_pred ccccc--CCCCCchhHHHHHHHHHHHhcc--c--CCCChHHHHHHHHhcCCCCCCcccccC------------C------
Q psy15438 80 GVSAS--ISHDPHILYTLSAVQIACLINR--E--HELPVDKIVAYVSKLQQPDGSFFGDMY------------G------ 135 (358)
Q Consensus 80 GF~~~--~~~~~~~~~Ty~Al~~L~ll~~--~--~~~~~~~~~~~l~s~Q~~dGgf~~~~~------------~------ 135 (358)
||+.. +...|++..|..++.+|..++. . .....+++++||.++|++||||..... +
T Consensus 367 GW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~ 446 (635)
T TIGR01507 367 GWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVT 446 (635)
T ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCcccccccc
Confidence 87776 3446999999888888877631 1 123578999999999999999975321 1
Q ss_pred -CcccchhHHHHHHHHHhCC-CChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccC-ChhcHHHHH
Q psy15438 136 -EVDTRFSFCAVACLSLLGK-LDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL-HEIDADKLA 212 (358)
Q Consensus 136 -esd~~~ty~al~~l~ll~~-~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~-~~~~~~~~~ 212 (358)
.+++--|-.++.++...+. .+...++++++||++.|++||||-++.+. .+...|..++.+|...|.. ....+++++
T Consensus 447 D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg~-~~~Y~T~~al~aL~~~g~~~~~~~i~rAv 525 (635)
T TIGR01507 447 DPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWGV-NYLYGTGAVLSALKAVGIDTREPYIQKAL 525 (635)
T ss_pred CCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCCC-ccccHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 1233335555555655543 23457899999999999999998656553 3455577788888877642 234578999
Q ss_pred HHHHhcCCCCCcccCCC----------CCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 213 WWLAERQLPSGGLNGRP----------EKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 213 ~wL~~~Q~~~GGf~gr~----------~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
+||+++|++||||.... ...+|+..|.|++.+|...+..+....++.++||+++|++ +||+
T Consensus 526 ~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~------dG~W 596 (635)
T TIGR01507 526 AWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRP------DGGW 596 (635)
T ss_pred HHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC------CCCC
Confidence 99999999999997432 2357888999999999998865444578999999999998 6999
No 26
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.89 E-value=1.7e-21 Score=203.37 Aligned_cols=259 Identities=18% Similarity=0.167 Sum_probs=193.1
Q ss_pred chHHHHHHHHHhhcCC-CCccccccccchHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHhcCC--------------C
Q psy15438 15 LGTKHAEYIKKYSDNK-EDYEYCMSEYLRMSGMYWGITTLSLLDQLDD--MPQDTIFDFITQCIH--------------P 77 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~-~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~--~~~~~~i~~i~~~q~--------------~ 77 (358)
...+|+++|.+..-.. +..-....+.+.+|.|-+++.+|.-.+..+. ...+++++||.++|. +
T Consensus 279 ~~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~ 358 (634)
T cd02892 279 AFKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR 358 (634)
T ss_pred HHHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence 5779999998865322 2222333456789999999999987774312 235789999999985 4
Q ss_pred CCcccccC--CCCCchhHHHHHHHHHHHhcccC-------CCChHHHHHHHHhcCCCCCCccccc-CC------------
Q psy15438 78 CGGVSASI--SHDPHILYTLSAVQIACLINREH-------ELPVDKIVAYVSKLQQPDGSFFGDM-YG------------ 135 (358)
Q Consensus 78 dGGF~~~~--~~~~~~~~Ty~Al~~L~ll~~~~-------~~~~~~~~~~l~s~Q~~dGgf~~~~-~~------------ 135 (358)
.|||+... ...|++..|..++.+|..+.... ...++++++||.++|++||||.... ..
T Consensus 359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e 438 (634)
T cd02892 359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE 438 (634)
T ss_pred CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence 67776542 34578889988888888776432 1235789999999999999998421 10
Q ss_pred --------CcccchhHHHHHHHHHhCCCCh-------hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhc
Q psy15438 136 --------EVDTRFSFCAVACLSLLGKLDA-------INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSIT 200 (358)
Q Consensus 136 --------esd~~~ty~al~~l~ll~~~~~-------~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~ll 200 (358)
.+.+..|..++.+|.+++.... ..++++++||+++|++||||.++.+. .....|+.++.+|..+
T Consensus 439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL~~~ 517 (634)
T cd02892 439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWGV-CYIYGTWFALEALAAA 517 (634)
T ss_pred hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCCC-ccHHHHHHHHHHHHHh
Confidence 2344558888888888876432 35889999999999999999776653 4455688889999988
Q ss_pred ccC--ChhcHHHHHHHHHhcCCCCCcccCCC----------CCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Q psy15438 201 GHL--HEIDADKLAWWLAERQLPSGGLNGRP----------EKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQV 268 (358)
Q Consensus 201 g~~--~~~~~~~~~~wL~~~Q~~~GGf~gr~----------~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~ 268 (358)
|.. ....++++++||+++|.+||||...+ ...+++..|.|++.+|...+..+....+++.+||+++|+
T Consensus 518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~ 597 (634)
T cd02892 518 GEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQL 597 (634)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCC
Confidence 864 23568899999999999999997532 235678899999999988876544457888999999999
Q ss_pred CCCCccccCCcc
Q psy15438 269 RNTFYFEMGVFS 280 (358)
Q Consensus 269 ~~~~~~~~GGf~ 280 (358)
+ +|||.
T Consensus 598 ~------~G~w~ 603 (634)
T cd02892 598 P------DGDWP 603 (634)
T ss_pred C------CCCCC
Confidence 8 69993
No 27
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.88 E-value=3.1e-21 Score=200.18 Aligned_cols=258 Identities=19% Similarity=0.152 Sum_probs=185.6
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC--CC--CCChHHHHHHHHhcCCCC------------
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ--LD--DMPQDTIFDFITQCIHPC------------ 78 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~--~~--~~~~~~~i~~i~~~q~~d------------ 78 (358)
...+|++.|.+.+-...++.....-.+.+|.|-+++.+|...|. .+ ....+++++||.++|..+
T Consensus 268 ~~~~~l~~l~~~~~~~~dg~~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~ 347 (621)
T TIGR01787 268 AFQKHLQRIDDYLWLQLDGMKMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHN 347 (621)
T ss_pred HHHHHHHHHhhcEEEeCCccEEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCC
Confidence 45788888887633222222222336889999999999987763 22 224589999999999755
Q ss_pred ---Cccccc--CCCCCchhHHHHHHHHHHHhcc----cCCCChHHHHHHHHhcCCCCCCcccccC---------------
Q psy15438 79 ---GGVSAS--ISHDPHILYTLSAVQIACLINR----EHELPVDKIVAYVSKLQQPDGSFFGDMY--------------- 134 (358)
Q Consensus 79 ---GGF~~~--~~~~~~~~~Ty~Al~~L~ll~~----~~~~~~~~~~~~l~s~Q~~dGgf~~~~~--------------- 134 (358)
|||+.. ....|++..|-+++.++.++.. ......+++++||.++|++||||.....
T Consensus 348 ~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~ 427 (621)
T TIGR01787 348 LKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEV 427 (621)
T ss_pred CCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhh
Confidence 776654 2345788888666655544432 1223456899999999999999985321
Q ss_pred -C-----CcccchhHHHHHHHHHhCCC---ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCCh
Q psy15438 135 -G-----EVDTRFSFCAVACLSLLGKL---DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE 205 (358)
Q Consensus 135 -~-----esd~~~ty~al~~l~ll~~~---~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~ 205 (358)
+ .+....|..++.+|..++.- ....++++++||+++|++||+|.++.+. .....|.+++.+|..+|....
T Consensus 428 f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~~ 506 (621)
T TIGR01787 428 FGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTYR 506 (621)
T ss_pred hccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCccc
Confidence 1 11223466777777766521 1346899999999999999999877664 234457888888988886422
Q ss_pred --hcHHHHHHHHHhcCCCCCcccCCCC----------CCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCc
Q psy15438 206 --IDADKLAWWLAERQLPSGGLNGRPE----------KLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFY 273 (358)
Q Consensus 206 --~~~~~~~~wL~~~Q~~~GGf~gr~~----------k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~ 273 (358)
..++++++||+++|++||||+.... ..+|+..|.|++.+|...+.......++.++||+++|++
T Consensus 507 ~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~---- 582 (621)
T TIGR01787 507 NCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRP---- 582 (621)
T ss_pred CCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCC----
Confidence 4578999999999999999985432 357899999999999888765434578999999999998
Q ss_pred cccCCc
Q psy15438 274 FEMGVF 279 (358)
Q Consensus 274 ~~~GGf 279 (358)
+|||
T Consensus 583 --dG~w 586 (621)
T TIGR01787 583 --DGDW 586 (621)
T ss_pred --CCCC
Confidence 6999
No 28
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.86 E-value=3.1e-20 Score=180.35 Aligned_cols=240 Identities=21% Similarity=0.206 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcc--cCCCChHHHHHHHHhcC--------------CCCCC
Q psy15438 65 DTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINR--EHELPVDKIVAYVSKLQ--------------QPDGS 128 (358)
Q Consensus 65 ~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~--~~~~~~~~~~~~l~s~Q--------------~~dGg 128 (358)
++.++||.+.|++||||+... +++..|..++.+|...+. .....++++++||.+.| .++||
T Consensus 2 ~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Gg 78 (348)
T cd02889 2 RRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGG 78 (348)
T ss_pred chHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCc
Confidence 578999999999999998765 888999888888877664 23345789999999999 68999
Q ss_pred cccccC--CCcccchhHHHHHHHHHhCCC-------ChhcHHHHHHHHHhcccCCCCCCCC-CC----------------
Q psy15438 129 FFGDMY--GEVDTRFSFCAVACLSLLGKL-------DAINLSKAVEFILSCCNFDGGFGSR-PG---------------- 182 (358)
Q Consensus 129 f~~~~~--~esd~~~ty~al~~l~ll~~~-------~~~~~~~~v~~L~s~Q~~dGGf~~~-pg---------------- 182 (358)
|..... +..+...|..++.++..++.. ....++++++||+++|+.||||... +.
T Consensus 79 w~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~ 158 (348)
T cd02889 79 WAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDI 158 (348)
T ss_pred CcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCC
Confidence 986432 224444555566666555433 2456889999999999999999743 21
Q ss_pred --CCCcccHHHHHHHHHHhcccCCh-------hcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhCCCC-
Q psy15438 183 --SESHAGLTYCCVGFLSITGHLHE-------IDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGT- 252 (358)
Q Consensus 183 --~esh~~~T~calasL~llg~~~~-------~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~- 252 (358)
..+++..|..++.+|..++.... ..++++++||.+.|.++|||.++.+. ..+..+.+++.+|...|...
T Consensus 159 ~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~-~~~y~ta~a~~aL~~~g~~~~ 237 (348)
T cd02889 159 MIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWGV-CFIYGTWFALEALAAAGEDEN 237 (348)
T ss_pred ccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCCC-cchHHHHHHHHHHHHcCCCcC
Confidence 23566778999999988886432 23678999999999999999765432 34556677788888887642
Q ss_pred CCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHHH
Q psy15438 253 WINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALT 332 (358)
Q Consensus 253 ~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls 332 (358)
....+++.+||+++|++ +|||.... ..|. .. ...|+..+|+..|.|+|.+|.
T Consensus 238 ~~~~~~~~~~L~~~Q~~------dG~w~~~~----~~~~----------------~~--~~~~~~~~~~~~Ta~al~aL~ 289 (348)
T cd02889 238 SPYVRKACDWLLSKQNP------DGGWGESY----ESYE----------------DP--SYAGGGRSTVVQTAWALLALM 289 (348)
T ss_pred cHHHHHHHHHHHHccCC------CCCcCCcc----cccc----------------cc--cccCCCCCcHHHHHHHHHHHH
Confidence 12468899999999998 69993100 0000 00 113456789999999999998
Q ss_pred hcCC
Q psy15438 333 MLDP 336 (358)
Q Consensus 333 ~~~~ 336 (358)
..+.
T Consensus 290 ~~g~ 293 (348)
T cd02889 290 AAGE 293 (348)
T ss_pred hcCC
Confidence 8754
No 29
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.85 E-value=2e-20 Score=194.43 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=159.5
Q ss_pred chHHHHHHHHHhhcCC------------CCccc--cc--cccchHHHHHHHHHHHHHhCCC----C----CCChHHHHHH
Q psy15438 15 LGTKHAEYIKKYSDNK------------EDYEY--CM--SEYLRMSGMYWGITTLSLLDQL----D----DMPQDTIFDF 70 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~------------~~~~~--~~--~~~~~~~~~y~~l~~L~lL~~~----~----~~~~~~~i~~ 70 (358)
..+|..+||.++|... .++++ .. ......-.|--+|.+|..+... + ....+++++|
T Consensus 329 ~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~ 408 (634)
T TIGR03463 329 MLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEF 408 (634)
T ss_pred HHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHH
Confidence 4578999999987411 12222 21 1112222344466666554321 1 1234678999
Q ss_pred HHhcCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhcccCC--------CChHHHHHHHHh
Q psy15438 71 ITQCIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINREHE--------LPVDKIVAYVSK 121 (358)
Q Consensus 71 i~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~~~--------~~~~~~~~~l~s 121 (358)
|+++|++||||+.... ..+.+..|-.+|.+|..+..... ..++++++||++
T Consensus 409 Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~ 488 (634)
T TIGR03463 409 ILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRS 488 (634)
T ss_pred HHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence 9999999999994321 24688899999999988753221 136789999999
Q ss_pred cCCCCCCcccccCCCcccchhHHHHHHHHHhCC-CChhcHHHHHHHHHhcccCCCCCCCC----------CCCCCcccHH
Q psy15438 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGK-LDAINLSKAVEFILSCCNFDGGFGSR----------PGSESHAGLT 190 (358)
Q Consensus 122 ~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~-~~~~~~~~~v~~L~s~Q~~dGGf~~~----------pg~esh~~~T 190 (358)
.|++||||.+ .++....+.|++++.+|..+|. .+...++++++||+++|++||||+.. ++.++++..|
T Consensus 489 ~Q~~dGsW~g-~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~T 567 (634)
T TIGR03463 489 RQREDGSFPG-SWGVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMT 567 (634)
T ss_pred hcCCCCCccc-cCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHH
Confidence 9999999976 3566778889999999998886 34577999999999999999999863 3457889999
Q ss_pred HHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCC
Q psy15438 191 YCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRP 229 (358)
Q Consensus 191 ~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~ 229 (358)
.||+.+|...|..+...++++++||+++|.++|||...+
T Consensus 568 A~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~ 606 (634)
T TIGR03463 568 SWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREP 606 (634)
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 999999999987666678999999999999999998654
No 30
>PLN02993 lupeol synthase
Probab=99.84 E-value=1.2e-19 Score=189.20 Aligned_cols=258 Identities=20% Similarity=0.142 Sum_probs=182.7
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHhcCCC---------------
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL--DDMPQDTIFDFITQCIHP--------------- 77 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~--~~~~~~~~i~~i~~~q~~--------------- 77 (358)
...+|++=|.+.+-..+++-..+.-.+.+|.|-|++.+|...|-. .....+++.+||++.|..
T Consensus 390 ~~~~~l~ri~d~lw~~edgm~~q~~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~ 469 (763)
T PLN02993 390 HFKKHLARIPDYMWVAEDGMKMQSFGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHIS 469 (763)
T ss_pred HHHHHHHHhhhcEEEeCCceEEcCCCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCC
Confidence 455666666554332222222222278999999999999988732 223467899999998852
Q ss_pred CCccccc--CCCCCchhHHHHHHHHHHHhcccC------CC---ChHHHHHHHHhcCCCCCCccccc-------------
Q psy15438 78 CGGVSAS--ISHDPHILYTLSAVQIACLINREH------EL---PVDKIVAYVSKLQQPDGSFFGDM------------- 133 (358)
Q Consensus 78 dGGF~~~--~~~~~~~~~Ty~Al~~L~ll~~~~------~~---~~~~~~~~l~s~Q~~dGgf~~~~------------- 133 (358)
.|||+.+ ....|+..+|-.++.++.+|...+ .+ ...++++||+++||+||||+...
T Consensus 470 ~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ 549 (763)
T PLN02993 470 KGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNP 549 (763)
T ss_pred CCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCH
Confidence 3777665 455789999987877655553221 12 35689999999999999997631
Q ss_pred -----CCCcccchhH---HHHHHHHHhCCCC--------hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHH
Q psy15438 134 -----YGEVDTRFSF---CAVACLSLLGKLD--------AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFL 197 (358)
Q Consensus 134 -----~~esd~~~ty---~al~~l~ll~~~~--------~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL 197 (358)
+-..|..+++ .++.+|.+++... ...++++++||++.|++||||.++.+. .....|++|+.+|
T Consensus 550 ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv-~y~YgT~~aL~aL 628 (763)
T PLN02993 550 TDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGI-CFIYATWFALGGL 628 (763)
T ss_pred HHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCccccccc-ccCcHHHHHHHHH
Confidence 0012333444 4556666655321 245789999999999999999888764 3455688999999
Q ss_pred HhcccCCh--hcHHHHHHHHHhcCCCCCcccCCCC------------CCCChhHHHHHHHHHHHhCCCCCC--CHHHHHH
Q psy15438 198 SITGHLHE--IDADKLAWWLAERQLPSGGLNGRPE------------KLPDVCYSWWVLASLHMLGRGTWI--NSAALRK 261 (358)
Q Consensus 198 ~llg~~~~--~~~~~~~~wL~~~Q~~~GGf~gr~~------------k~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~ 261 (358)
...|+... ..++|+++||+++|++||||+.... ..+-+..|.|++.+|...|..... -.++.++
T Consensus 629 ~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~ 708 (763)
T PLN02993 629 AAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAK 708 (763)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 98887532 4689999999999999999986431 245668999999999888864321 2578999
Q ss_pred HHHHhcCCCCCccccCCc
Q psy15438 262 FILASQVRNTFYFEMGVF 279 (358)
Q Consensus 262 ~ll~~Q~~~~~~~~~GGf 279 (358)
||++.|++ +|++
T Consensus 709 ~L~~~Q~~------~G~W 720 (763)
T PLN02993 709 LIITSQLE------NGDF 720 (763)
T ss_pred HHHhccCC------CCCC
Confidence 99999998 6998
No 31
>PLN03012 Camelliol C synthase
Probab=99.84 E-value=2.5e-19 Score=186.40 Aligned_cols=258 Identities=19% Similarity=0.154 Sum_probs=180.9
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHhcCCC---------------
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD--MPQDTIFDFITQCIHP--------------- 77 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~--~~~~~~i~~i~~~q~~--------------- 77 (358)
...+|++=|.+.+-..+++-..+.-.+.+|.|-+++.+|...+-.++ ....++.+||++.|..
T Consensus 390 ~~k~hl~ri~d~lw~~~dGm~~q~~gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~ 469 (759)
T PLN03012 390 HFKKHLLRISDYLWIAEDGMKMQSFGSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHIS 469 (759)
T ss_pred HHHHHHHHhhhcEEEeCCceEEcCCCCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCC
Confidence 35566665555432222222222227899999999999988773221 2357899999998852
Q ss_pred CCccccc--CCCCCchhHHHHHHHHHHHhccc------CCC---ChHHHHHHHHhcCCCCCCccccc-------------
Q psy15438 78 CGGVSAS--ISHDPHILYTLSAVQIACLINRE------HEL---PVDKIVAYVSKLQQPDGSFFGDM------------- 133 (358)
Q Consensus 78 dGGF~~~--~~~~~~~~~Ty~Al~~L~ll~~~------~~~---~~~~~~~~l~s~Q~~dGgf~~~~------------- 133 (358)
.|||+.+ ....|+..+|.-++.++.++... ..+ ...++++||+++||+||||+...
T Consensus 470 ~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp 549 (759)
T PLN03012 470 KGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNP 549 (759)
T ss_pred CCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcCh
Confidence 3676655 34568888997777664444211 112 35689999999999999996531
Q ss_pred ---CCC--cccch---hHHHHHHHHHhCCCC--------hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHH
Q psy15438 134 ---YGE--VDTRF---SFCAVACLSLLGKLD--------AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFL 197 (358)
Q Consensus 134 ---~~e--sd~~~---ty~al~~l~ll~~~~--------~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL 197 (358)
.+. .|..+ |-.++.+|.+++... ...+.++++||++.|++||||.++.+.. ....|++||.+|
T Consensus 550 ~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~-y~YgT~~aL~aL 628 (759)
T PLN03012 550 TEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGIC-FTYGTWFALAGL 628 (759)
T ss_pred hhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCccccccc-CCcHHHHHHHHH
Confidence 111 12222 444556666665421 2457899999999999999999998864 344588889999
Q ss_pred HhcccCCh--hcHHHHHHHHHhcCCCCCcccCCCCC------------CCChhHHHHHHHHHHHhCCCCC--CCHHHHHH
Q psy15438 198 SITGHLHE--IDADKLAWWLAERQLPSGGLNGRPEK------------LPDVCYSWWVLASLHMLGRGTW--INSAALRK 261 (358)
Q Consensus 198 ~llg~~~~--~~~~~~~~wL~~~Q~~~GGf~gr~~k------------~~D~cys~w~~a~L~ll~~~~~--~d~~~l~~ 261 (358)
...|+... .-++|+++||+++|++||||.+.... .+-+..|.|++.+|...|..+. ...++.++
T Consensus 629 ~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~ 708 (759)
T PLN03012 629 AAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAK 708 (759)
T ss_pred HHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 98887432 45899999999999999999976532 3556899999999988886432 23688999
Q ss_pred HHHHhcCCCCCccccCCc
Q psy15438 262 FILASQVRNTFYFEMGVF 279 (358)
Q Consensus 262 ~ll~~Q~~~~~~~~~GGf 279 (358)
||++.|.+ +|+|
T Consensus 709 ~Ll~~Q~~------dG~W 720 (759)
T PLN03012 709 LIINSQLE------NGDF 720 (759)
T ss_pred HHHHcccC------CCCC
Confidence 99999998 6999
No 32
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.83 E-value=1.4e-19 Score=187.96 Aligned_cols=213 Identities=22% Similarity=0.221 Sum_probs=161.6
Q ss_pred chHHHHHHHHHhhcCC-----------CCcc--ccc--cccchHHHHHHHHHHHHHhCCCC----CCChHHHHHHHHhcC
Q psy15438 15 LGTKHAEYIKKYSDNK-----------EDYE--YCM--SEYLRMSGMYWGITTLSLLDQLD----DMPQDTIFDFITQCI 75 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~-----------~~~~--~~~--~~~~~~~~~y~~l~~L~lL~~~~----~~~~~~~i~~i~~~q 75 (358)
...|..+||++.|... .+++ |.. ...+.++.|-.+|.+|..++..+ ....+++++||+++|
T Consensus 337 ~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Q 416 (635)
T TIGR01507 337 ALVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQ 416 (635)
T ss_pred HHHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhc
Confidence 5679999999886421 1222 221 12467889999999998875211 124578999999999
Q ss_pred CCCCcccccCC-------------------CCCchhHHHHHHHHHHHhccc-CCCChHHHHHHHHhcCCCCCCcccccCC
Q psy15438 76 HPCGGVSASIS-------------------HDPHILYTLSAVQIACLINRE-HELPVDKIVAYVSKLQQPDGSFFGDMYG 135 (358)
Q Consensus 76 ~~dGGF~~~~~-------------------~~~~~~~Ty~Al~~L~ll~~~-~~~~~~~~~~~l~s~Q~~dGgf~~~~~~ 135 (358)
++||||+.... ..|.+..|-.++.+|...+.. ....++++++||++.|++||||.+. ++
T Consensus 417 n~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~-wg 495 (635)
T TIGR01507 417 SSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGR-WG 495 (635)
T ss_pred CCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccC-CC
Confidence 99999975321 125667788888888887532 2334789999999999999998553 56
Q ss_pred CcccchhHHHHHHHHHhCC-CChhcHHHHHHHHHhcccCCCCCCCC----------CCCCCcccHHHHHHHHHHhcccCC
Q psy15438 136 EVDTRFSFCAVACLSLLGK-LDAINLSKAVEFILSCCNFDGGFGSR----------PGSESHAGLTYCCVGFLSITGHLH 204 (358)
Q Consensus 136 esd~~~ty~al~~l~ll~~-~~~~~~~~~v~~L~s~Q~~dGGf~~~----------pg~esh~~~T~calasL~llg~~~ 204 (358)
..++..|..++.+|...|. .....++++++||+++|+.||||+.. ..+++++..|.||+.+|...+..+
T Consensus 496 ~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~ 575 (635)
T TIGR01507 496 VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAE 575 (635)
T ss_pred CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCC
Confidence 6677777778888887765 23467899999999999999999853 224688899999999999988765
Q ss_pred hhcHHHHHHHHHhcCCCCCcccCC
Q psy15438 205 EIDADKLAWWLAERQLPSGGLNGR 228 (358)
Q Consensus 205 ~~~~~~~~~wL~~~Q~~~GGf~gr 228 (358)
...++++++||.++|+++|||...
T Consensus 576 ~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 576 SEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred cHHHHHHHHHHHHhcCCCCCCCCc
Confidence 567899999999999999999754
No 33
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.83 E-value=2.6e-19 Score=187.09 Aligned_cols=213 Identities=22% Similarity=0.266 Sum_probs=161.2
Q ss_pred chHHHHHHHHHhhc--CC----------CCccc--ccc--ccchHHHHHHHHHHHHHhCCCCC-------CChHHHHHHH
Q psy15438 15 LGTKHAEYIKKYSD--NK----------EDYEY--CMS--EYLRMSGMYWGITTLSLLDQLDD-------MPQDTIFDFI 71 (358)
Q Consensus 15 ~~~~h~~yl~~~~~--~~----------~~~~~--~~~--~~~~~~~~y~~l~~L~lL~~~~~-------~~~~~~i~~i 71 (358)
..+|.++||.+.|. .+ .++++ ... .....-.|-.+|.+|..++.... ...+++++||
T Consensus 330 ~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wL 409 (634)
T cd02892 330 ALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWL 409 (634)
T ss_pred HHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHH
Confidence 56789999998875 11 12222 111 12334468888888888875421 2346799999
Q ss_pred HhcCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhcccCC-------CChHHHHHHHHhcC
Q psy15438 72 TQCIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINREHE-------LPVDKIVAYVSKLQ 123 (358)
Q Consensus 72 ~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~~~-------~~~~~~~~~l~s~Q 123 (358)
+++|++||||..... ..+++..|.+++.+|..++.... ..++++++||++.|
T Consensus 410 l~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q 489 (634)
T cd02892 410 LGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQ 489 (634)
T ss_pred HhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHcc
Confidence 999999999974311 13677889999999998865322 24789999999999
Q ss_pred CCCCCcccccCCCcccchhHHHHHHHHHhCCC--ChhcHHHHHHHHHhcccCCCCCCCCC----------CCCCcccHHH
Q psy15438 124 QPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL--DAINLSKAVEFILSCCNFDGGFGSRP----------GSESHAGLTY 191 (358)
Q Consensus 124 ~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~--~~~~~~~~v~~L~s~Q~~dGGf~~~p----------g~esh~~~T~ 191 (358)
++||||.+ .++...+..|+.++.+|..+|.. ....++++++||+++|+.||||+..+ +.++++..|.
T Consensus 490 ~~DGsW~g-~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA 568 (634)
T cd02892 490 EPDGSWYG-RWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTA 568 (634)
T ss_pred CCCCCccc-cCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHH
Confidence 99999965 45566677788888888888763 34678999999999999999998532 3567888899
Q ss_pred HHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCC
Q psy15438 192 CCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGR 228 (358)
Q Consensus 192 calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr 228 (358)
+|+.+|...+..+...++++++||.++|.++|||...
T Consensus 569 ~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~ 605 (634)
T cd02892 569 WALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQE 605 (634)
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCc
Confidence 9999998888766667899999999999999999653
No 34
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.81 E-value=5.4e-20 Score=149.85 Aligned_cols=109 Identities=30% Similarity=0.462 Sum_probs=92.0
Q ss_pred HHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccCCCChHHH--HHHHHhcCCCCCCccccc-CCCcccchhHH
Q psy15438 68 FDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKI--VAYVSKLQQPDGSFFGDM-YGEVDTRFSFC 144 (358)
Q Consensus 68 i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~--~~~l~s~Q~~dGgf~~~~-~~esd~~~ty~ 144 (358)
|+||+++|++||||+.. +..+++..|+.|+.+|..++... +++++ ++||.++|++||||...+ +.++|++.|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 77899999999999999997654 48888 999999999999999988 45789999999
Q ss_pred HHHHHHHhCCCCh-hcHHHHHHHHHhcccCCCCCCC
Q psy15438 145 AVACLSLLGKLDA-INLSKAVEFILSCCNFDGGFGS 179 (358)
Q Consensus 145 al~~l~ll~~~~~-~~~~~~v~~L~s~Q~~dGGf~~ 179 (358)
+++++.+++.... +.++++++||+++|++||||++
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999987432 6789999999999999999974
No 35
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.81 E-value=3.8e-18 Score=150.04 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=185.4
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHh-cCCCCCcccccCCCCCch
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQ-CIHPCGGVSASISHDPHI 91 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~-~q~~dGGF~~~~~~~~~~ 91 (358)
-.+.++-+.||.+++.+...+.|++.-+..+..||+|+.++.+||. +...+|+.++||++ .|...+|+.
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~-evPr~EktiefL~d~~qt~~~~~a--------- 74 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH-EVPRKEKTIEFLYDQMQTAGVGVA--------- 74 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC-cCchHHHHHHHHHHHHHHhhhHHH---------
Confidence 4678899999999998766666666666668999999999999996 45679999999998 455555553
Q ss_pred hHHHHHHHHHHHhcccCCCChHH-HHHHHHhcCCC------CCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHH
Q psy15438 92 LYTLSAVQIACLINREHELPVDK-IVAYVSKLQQP------DGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAV 164 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~~~~~~~~~-~~~~l~s~Q~~------dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v 164 (358)
+|+..|.+|+..+ .++++ .+.+++-..-+ +||-.. -+.....+.||+...+|.+.|. .-.+.+.
T Consensus 75 ----~~~~~l~~lg~~d-~~r~~~~l~~~~~~~~e~Kf~~~lggs~~-f~t~~~Le~ty~~~~~l~~~n~---~~~eE~k 145 (274)
T COG1689 75 ----MAIEFLRILGAKD-LARNKMLLLFLKYNPLEEKFAVGLGGSEE-FGTATPLEATYWMMSALNMVNY---EYLEEMK 145 (274)
T ss_pred ----HHHHHHHHhcccc-cchhhHHHHHhhcCchhHHHhhhcCceee-cCCCchHHHHHHHHHHHHHhCc---CchHHHH
Confidence 4778888886432 23332 22233322211 233221 1223458889999999998874 2457777
Q ss_pred HHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCC-ChhHHHHHHH
Q psy15438 165 EFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLP-DVCYSWWVLA 243 (358)
Q Consensus 165 ~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~-D~cys~w~~a 243 (358)
+|+++-|+.+|++.+---.-+....||.|+-.|...+. .+.+..|=..| ..+|||+..|+..| =+.-||+++.
T Consensus 146 ~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~-----~~~v~~Fe~~c-~~~Ggf~~~P~syPPYiE~t~ya~r 219 (274)
T COG1689 146 EKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGP-----KEEVRHFELCC-GDWGGFTEVPNSYPPYIEPTFYALR 219 (274)
T ss_pred HHHHHHhhhhccccccccCCcchHHHHHHHHhhccccc-----hHHHHhHHhcc-ccCCCcccCCCCCCCccchHHHHHh
Confidence 88888888877665432233455667887766655443 34455664444 35799999999854 4778999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHH
Q psy15438 244 SLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFH 323 (358)
Q Consensus 244 ~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~h 323 (358)
+|.+|++. .-.++.++||.+.||+ +|||+ +..-...+-+..
T Consensus 220 ~lelL~~k--~~i~~~~rFI~slqN~------nGGFR-------------------------------RS~~~GISt~e~ 260 (274)
T COG1689 220 GLELLGGK--YCISDHIRFIRSLQNQ------NGGFR-------------------------------RSYELGISTFEN 260 (274)
T ss_pred HHHHHccC--cCchHHHHHHHHhhcC------CCCee-------------------------------eeEeccccchHH
Confidence 99999987 3358899999999999 79995 455567899999
Q ss_pred HHHHHHHHHhcC
Q psy15438 324 TLFGVAALTMLD 335 (358)
Q Consensus 324 T~~~l~~Ls~~~ 335 (358)
||+||+.|..+.
T Consensus 261 tYrAl~~L~~l~ 272 (274)
T COG1689 261 TYRALASLASLH 272 (274)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.78 E-value=4.4e-18 Score=176.73 Aligned_cols=214 Identities=19% Similarity=0.194 Sum_probs=154.1
Q ss_pred chHHHHHHHHHhhcCCC-------------Cccc--cccc--cchHHHHHHHHHHHHHhCC-CCCC---ChHHHHHHHHh
Q psy15438 15 LGTKHAEYIKKYSDNKE-------------DYEY--CMSE--YLRMSGMYWGITTLSLLDQ-LDDM---PQDTIFDFITQ 73 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~-------------~~~~--~~~~--~~~~~~~y~~l~~L~lL~~-~~~~---~~~~~i~~i~~ 73 (358)
..+|..+||.+.|.... |+++ ...+ ...+..+--.+.++.++.. .+.. ..+++++||.+
T Consensus 320 ~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~ 399 (621)
T TIGR01787 320 ALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILG 399 (621)
T ss_pred HHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHH
Confidence 57899999999886431 1222 1111 1244455555555544442 1222 24579999999
Q ss_pred cCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhccc-C--CCChHHHHHHHHhcCCCCCCc
Q psy15438 74 CIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINRE-H--ELPVDKIVAYVSKLQQPDGSF 129 (358)
Q Consensus 74 ~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~-~--~~~~~~~~~~l~s~Q~~dGgf 129 (358)
+|++||||+.... ..+.+..|..++.+|...+.. + ...++++++||.+.|++||+|
T Consensus 400 ~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw 479 (621)
T TIGR01787 400 MQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSW 479 (621)
T ss_pred HcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999985321 123346788899998877531 1 134789999999999999999
Q ss_pred ccccCCCcccchhHHHHHHHHHhCCCC--hhcHHHHHHHHHhcccCCCCCCCCC----------CCCCcccHHHHHHHHH
Q psy15438 130 FGDMYGEVDTRFSFCAVACLSLLGKLD--AINLSKAVEFILSCCNFDGGFGSRP----------GSESHAGLTYCCVGFL 197 (358)
Q Consensus 130 ~~~~~~esd~~~ty~al~~l~ll~~~~--~~~~~~~v~~L~s~Q~~dGGf~~~p----------g~esh~~~T~calasL 197 (358)
.+ .++...+..|..++.+|..+|... ...++++++||+++|+.||||+... ..++++..|.||+.+|
T Consensus 480 ~g-~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL 558 (621)
T TIGR01787 480 FG-RWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMAL 558 (621)
T ss_pred cc-cCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHH
Confidence 75 355555666777888888887642 2668999999999999999998643 2368899999999999
Q ss_pred HhcccCChhcHHHHHHHHHhcCCCCCcccCCC
Q psy15438 198 SITGHLHEIDADKLAWWLAERQLPSGGLNGRP 229 (358)
Q Consensus 198 ~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~ 229 (358)
...+......++++++||.++|.++|||....
T Consensus 559 ~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~ 590 (621)
T TIGR01787 559 IAAGEADSEAIERGVKYLLETQRPDGDWPQEY 590 (621)
T ss_pred HHcCccchHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 88886555568999999999999999997543
No 37
>PLN03012 Camelliol C synthase
Probab=99.78 E-value=2.2e-18 Score=179.38 Aligned_cols=163 Identities=25% Similarity=0.286 Sum_probs=131.3
Q ss_pred hHHHHHHHHhcCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhcccC------CC--ChHH
Q psy15438 64 QDTIFDFITQCIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINREH------EL--PVDK 114 (358)
Q Consensus 64 ~~~~i~~i~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~~------~~--~~~~ 114 (358)
..++++||+++|++||||+.... ..+....|-.+|.+|.++.... ++ .+++
T Consensus 515 l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~r 594 (759)
T PLN03012 515 LHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKK 594 (759)
T ss_pred HHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHH
Confidence 45799999999999999976532 1355667888999999886421 12 3678
Q ss_pred HHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCC--ChhcHHHHHHHHHhcccCCCCCCCCCC----------
Q psy15438 115 IVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL--DAINLSKAVEFILSCCNFDGGFGSRPG---------- 182 (358)
Q Consensus 115 ~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~--~~~~~~~~v~~L~s~Q~~dGGf~~~pg---------- 182 (358)
+++||++.|++||||.+. ++-..+..|+.|+.+|...|.. +...++++++||++.|++||||+....
T Consensus 595 Av~~L~~~Q~~DGsW~G~-Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~ 673 (759)
T PLN03012 595 AAEYIENIQMLDGSWYGN-WGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ 673 (759)
T ss_pred HHHHHHHhcCCCCCCccc-ccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence 999999999999999963 4555666788889999888863 336799999999999999999998642
Q ss_pred --CCCcccHHHHHHHHHHhcccCCh--hcHHHHHHHHHhcCCCCCcccC
Q psy15438 183 --SESHAGLTYCCVGFLSITGHLHE--IDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 183 --~esh~~~T~calasL~llg~~~~--~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
..|++..|.||+.+|...|..+. ..++|+++||+++|.++|+|.-
T Consensus 674 ~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q 722 (759)
T PLN03012 674 EGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQ 722 (759)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCC
Confidence 35888999999999999887432 3589999999999999999864
No 38
>PLN02993 lupeol synthase
Probab=99.78 E-value=3e-18 Score=178.83 Aligned_cols=163 Identities=25% Similarity=0.334 Sum_probs=133.9
Q ss_pred hHHHHHHHHhcCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhccc-C-----C--CChHH
Q psy15438 64 QDTIFDFITQCIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINRE-H-----E--LPVDK 114 (358)
Q Consensus 64 ~~~~i~~i~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~-~-----~--~~~~~ 114 (358)
..++++||+++||+||||+.... ..+.+..|-.+|.+|.+++.. + + ..+++
T Consensus 515 l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~r 594 (763)
T PLN02993 515 LYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEK 594 (763)
T ss_pred HHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHH
Confidence 35799999999999999987541 136778899999999998642 1 1 23578
Q ss_pred HHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCC--ChhcHHHHHHHHHhcccCCCCCCCCC-----------
Q psy15438 115 IVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL--DAINLSKAVEFILSCCNFDGGFGSRP----------- 181 (358)
Q Consensus 115 ~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~--~~~~~~~~v~~L~s~Q~~dGGf~~~p----------- 181 (358)
+++||++.|++||||.+ .++...++.|++|+.+|...|.. +.+.++++++||+++|+.||||+...
T Consensus 595 Av~yL~~~Q~~DGSW~G-~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~ 673 (763)
T PLN02993 595 AVQFIESKQTPDGSWYG-NWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPL 673 (763)
T ss_pred HHHHHHHhcCCCCCccc-ccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccC
Confidence 99999999999999987 47788888999999999888874 23679999999999999999998753
Q ss_pred -CCCCcccHHHHHHHHHHhcccCCh--hcHHHHHHHHHhcCCCCCcccC
Q psy15438 182 -GSESHAGLTYCCVGFLSITGHLHE--IDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 182 -g~esh~~~T~calasL~llg~~~~--~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
++.|++..|.||+.+|...|..+. ..++|+++||.++|.++|+|.-
T Consensus 674 ~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q 722 (763)
T PLN02993 674 EGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQ 722 (763)
T ss_pred CCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCC
Confidence 245888899999999998886433 3588999999999999998754
No 39
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.76 E-value=1.3e-18 Score=141.63 Aligned_cols=108 Identities=33% Similarity=0.486 Sum_probs=91.0
Q ss_pred HHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHH--HHHHHhcccCCCCCCCCC-CCCCcccHHHH
Q psy15438 116 VAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKA--VEFILSCCNFDGGFGSRP-GSESHAGLTYC 192 (358)
Q Consensus 116 ~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~--v~~L~s~Q~~dGGf~~~p-g~esh~~~T~c 192 (358)
|+||+++|++||||... +.++++..|+.|+.+|..++. ..+.+++ ++||.++|++||||+..| +.+++..+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~--~~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGE--EPDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTS--HHCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 788999999999999999986 3468888 999999999999999998 56688999999
Q ss_pred HHHHHHhcccCCh-hcHHHHHHHHHhcCCCCCccc
Q psy15438 193 CVGFLSITGHLHE-IDADKLAWWLAERQLPSGGLN 226 (358)
Q Consensus 193 alasL~llg~~~~-~~~~~~~~wL~~~Q~~~GGf~ 226 (358)
++++|.+++..+. ..++++++||+++|+++|||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999987543 568889999999999999996
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.67 E-value=2.9e-14 Score=135.65 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=153.3
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHH-------hcCCCCCcccccCCC--CCchhHHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFIT-------QCIHPCGGVSASISH--DPHILYTLSAVQIAC 102 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~-------~~q~~dGGF~~~~~~--~~~~~~Ty~Al~~L~ 102 (358)
|++......+++.-...++.-|...+..+...++++.+||. ++|++||||+...+. .++..-|.+++.+|.
T Consensus 12 P~gc~Eq~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~ 91 (292)
T cd02897 12 PYGCGEQNMVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFA 91 (292)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHH
Confidence 66655555577777777777777766555445667777776 589999999866433 678888988888887
Q ss_pred Hhccc---CCCChHHHHHHHHhcCCCCCCccccc--------CC-CcccchhHHHHHHHHHhCCC-ChhcHHHHHHHHHh
Q psy15438 103 LINRE---HELPVDKIVAYVSKLQQPDGSFFGDM--------YG-EVDTRFSFCAVACLSLLGKL-DAINLSKAVEFILS 169 (358)
Q Consensus 103 ll~~~---~~~~~~~~~~~l~s~Q~~dGgf~~~~--------~~-esd~~~ty~al~~l~ll~~~-~~~~~~~~v~~L~s 169 (358)
..... +...++++++||.+.|++||||.... ++ ++++..|-.++.+|...|.. ....++++++||.+
T Consensus 92 ~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~ 171 (292)
T cd02897 92 QARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEA 171 (292)
T ss_pred HHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHH
Confidence 76532 22346789999999999999998531 11 23344566666666666653 23568999999999
Q ss_pred cccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHh---cCCCCCcccCC----------C-CCCCCh
Q psy15438 170 CCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAE---RQLPSGGLNGR----------P-EKLPDV 235 (358)
Q Consensus 170 ~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~---~Q~~~GGf~gr----------~-~k~~D~ 235 (358)
.+.. ..+...+..+..+|.+.+.. ..++++++|.. ++...|+|... + ...+|+
T Consensus 172 ~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~v 238 (292)
T cd02897 172 ALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEV 238 (292)
T ss_pred hccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchH
Confidence 7764 12344456667778887732 23455555543 44445666421 1 234688
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 236 CYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 236 cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
.-|-|++.+|...+........++++||.++|++ .|||
T Consensus 239 e~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~------~Ggf 276 (292)
T cd02897 239 EMTAYALLALLSAGGEDLAEALPIVKWLAKQRNS------LGGF 276 (292)
T ss_pred HHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCC------CCCc
Confidence 8899998888777642233457788899999988 6999
No 41
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.65 E-value=4.1e-14 Score=135.06 Aligned_cols=227 Identities=14% Similarity=0.078 Sum_probs=156.5
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCCC---CCh-------HHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLDD---MPQ-------DTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIA 101 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~---~~~-------~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L 101 (358)
|++...+..+++.-..+++.=|.-.+..+. ..+ ++.++.++++|++||||+...+..++...|.+++.+|
T Consensus 12 P~GC~EQ~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l 91 (297)
T cd02896 12 PTGCGEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVF 91 (297)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHH
Confidence 666555555666666666666666554322 112 3455566788999999987766678888898888888
Q ss_pred HHhcccCCC---ChHHHHHHHHhcCCCCCCccccc--------CC----CcccchhHHHHHHHHHhCCCC-------hhc
Q psy15438 102 CLINREHEL---PVDKIVAYVSKLQQPDGSFFGDM--------YG----EVDTRFSFCAVACLSLLGKLD-------AIN 159 (358)
Q Consensus 102 ~ll~~~~~~---~~~~~~~~l~s~Q~~dGgf~~~~--------~~----esd~~~ty~al~~l~ll~~~~-------~~~ 159 (358)
........+ .++++++||.+.|++||+|.... ++ ++++..|-.++.+|.-.+... ...
T Consensus 92 ~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~ 171 (297)
T cd02896 92 SLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQS 171 (297)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHH
Confidence 877543233 35789999999999999998641 11 245555655665555544321 236
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCC-----------
Q psy15438 160 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGR----------- 228 (358)
Q Consensus 160 ~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr----------- 228 (358)
++++++||.+++.. ..+...+.-+..+|++.+.. ...++.+||.++|..+||+...
T Consensus 172 i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~~---~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~ 238 (297)
T cd02896 172 IRKAISYLENQLPN----------LQRPYALAITAYALALADSP---LSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVP 238 (297)
T ss_pred HHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCCh---hhHHHHHHHHHHhhhCCCcceeccCcCccCCCC
Confidence 78999999998763 11232233344567777653 5678899999999999988642
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 229 PEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 229 ~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
.....++.-|-|++.++...+. ......+++||.+.|+. .|||
T Consensus 239 ~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~~qr~~------~Ggf 281 (297)
T cd02896 239 GPSAITVETTAYALLALLKLGD--IEYANPIARWLTEQRNY------GGGF 281 (297)
T ss_pred CCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHHhcCCC------CCCe
Confidence 2234488999999888776664 34678999999998887 6999
No 42
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.50 E-value=7.1e-13 Score=117.00 Aligned_cols=213 Identities=19% Similarity=0.195 Sum_probs=151.6
Q ss_pred CCChHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhc-CCCCCCcccccCCCccc
Q psy15438 61 DMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKL-QQPDGSFFGDMYGEVDT 139 (358)
Q Consensus 61 ~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~-Q~~dGgf~~~~~~esd~ 139 (358)
.++.+++++||...|+.||||....+-...+..||.|+.++.+|+.. ...+++.++||.+. |..-+|
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~e-vPr~EktiefL~d~~qt~~~~----------- 72 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHE-VPRKEKTIEFLYDQMQTAGVG----------- 72 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCc-CchHHHHHHHHHHHHHHhhhH-----------
Confidence 35789999999999999999998776555589999999999999854 23589999999983 333333
Q ss_pred chhHHHHHHHHHhCCCChhcHHHH-HHHHHhcc------cCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHH
Q psy15438 140 RFSFCAVACLSLLGKLDAINLSKA-VEFILSCC------NFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLA 212 (358)
Q Consensus 140 ~~ty~al~~l~ll~~~~~~~~~~~-v~~L~s~Q------~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~ 212 (358)
.+.++-.+.++|.- ..+.++. +.++.-.. --+||--. -+.......|||...+|.+-+... .+...
T Consensus 73 --~a~~~~~l~~lg~~-d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~-f~t~~~Le~ty~~~~~l~~~n~~~---~eE~k 145 (274)
T COG1689 73 --VAMAIEFLRILGAK-DLARNKMLLLFLKYNPLEEKFAVGLGGSEE-FGTATPLEATYWMMSALNMVNYEY---LEEMK 145 (274)
T ss_pred --HHHHHHHHHHhccc-ccchhhHHHHHhhcCchhHHHhhhcCceee-cCCCchHHHHHHHHHHHHHhCcCc---hHHHH
Confidence 34566777777752 2333322 12221111 02343211 112223567999999999988532 34566
Q ss_pred HHHHhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccc
Q psy15438 213 WWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVD 292 (358)
Q Consensus 213 ~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~ 292 (358)
.|+.+-|+.+|++.+-.-+.+.+..||.++-+|...+ -.+..+.|-++|-+ .|||
T Consensus 146 ~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe~~c~~-------~Ggf------------- 200 (274)
T COG1689 146 EKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFELCCGD-------WGGF------------- 200 (274)
T ss_pred HHHHHHhhhhccccccccCCcchHHHHHHHHhhcccc-----chHHHHhHHhcccc-------CCCc-------------
Confidence 7888888888888877778888889988766665544 25788888888754 4999
Q ss_pred cccccccccccccccccccCCCCCCC-CChHHHHHHHHHHHhcCC
Q psy15438 293 YCTQVRNRIEQGCSVRTCISDRPLDI-PDPFHTLFGVAALTMLDP 336 (358)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~D~~hT~~~l~~Ls~~~~ 336 (358)
...|++. |.++.||||+.+|+||+.
T Consensus 201 -------------------~~~P~syPPYiE~t~ya~r~lelL~~ 226 (274)
T COG1689 201 -------------------TEVPNSYPPYIEPTFYALRGLELLGG 226 (274)
T ss_pred -------------------ccCCCCCCCccchHHHHHhHHHHHcc
Confidence 8999995 699999999999999986
No 43
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.46 E-value=4e-12 Score=121.41 Aligned_cols=196 Identities=14% Similarity=0.041 Sum_probs=134.6
Q ss_pred HHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHhcCCCCCcccccC--------
Q psy15438 17 TKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDM---PQDTIFDFITQCIHPCGGVSASI-------- 85 (358)
Q Consensus 17 ~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~---~~~~~i~~i~~~q~~dGGF~~~~-------- 85 (358)
++-++.+.+.+.....++.+.......|+|-|++.+|...++...+ ..+++++||.+.|++||+|....
T Consensus 55 ~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~ 134 (297)
T cd02896 55 RQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMT 134 (297)
T ss_pred HHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhcc
Confidence 3344444444544444555656678899999999999998754333 34679999999999999998542
Q ss_pred -C---CCCchhHHHHHHHHHHHhcccC-------CCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCC
Q psy15438 86 -S---HDPHILYTLSAVQIACLINREH-------ELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGK 154 (358)
Q Consensus 86 -~---~~~~~~~Ty~Al~~L~ll~~~~-------~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~ 154 (358)
+ .++++..|-+++.+|...+... ...++++++||.+.+.+ ..+...+..+..+|.+.|.
T Consensus 135 gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~~ 204 (297)
T cd02896 135 GGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALADS 204 (297)
T ss_pred CCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCC
Confidence 1 1357777866776666554321 12467899999998754 1233333333445555554
Q ss_pred CChhcHHHHHHHHHhcccCCCCCCCCC--------C---CCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCC
Q psy15438 155 LDAINLSKAVEFILSCCNFDGGFGSRP--------G---SESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSG 223 (358)
Q Consensus 155 ~~~~~~~~~v~~L~s~Q~~dGGf~~~p--------g---~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~G 223 (358)
....++.++|.+.|+.|||++... + ....+..|.+|+.++...+. .....+.++||.++|+..|
T Consensus 205 ---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~~qr~~~G 279 (297)
T cd02896 205 ---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLTEQRNYGG 279 (297)
T ss_pred ---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHHhcCCCCC
Confidence 367889999999999999987521 1 12256778888888776663 3357789999999999999
Q ss_pred cccC
Q psy15438 224 GLNG 227 (358)
Q Consensus 224 Gf~g 227 (358)
||..
T Consensus 280 gf~s 283 (297)
T cd02896 280 GFGS 283 (297)
T ss_pred Ceeh
Confidence 9985
No 44
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.45 E-value=1e-11 Score=118.27 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=137.0
Q ss_pred hHHHHHHHHH-------hhcCCCCccccccc--cchHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHhcCCCCCcccc
Q psy15438 16 GTKHAEYIKK-------YSDNKEDYEYCMSE--YLRMSGMYWGITTLSLLDQLDDM---PQDTIFDFITQCIHPCGGVSA 83 (358)
Q Consensus 16 ~~~h~~yl~~-------~~~~~~~~~~~~~~--~~~~~~~y~~l~~L~lL~~~~~~---~~~~~i~~i~~~q~~dGGF~~ 83 (358)
+++.++||.+ .+.....++++... .+..|+|.+++.+|...+....+ ..+++++||.+.|++||||..
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 5788888875 34433334434332 67889999999999988753222 357899999999999999985
Q ss_pred cC---------CCCCchhHHHHHHHHHHHhccc-CCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhC
Q psy15438 84 SI---------SHDPHILYTLSAVQIACLINRE-HELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLG 153 (358)
Q Consensus 84 ~~---------~~~~~~~~Ty~Al~~L~ll~~~-~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~ 153 (358)
.. +..+.+..|-.++.+|...+.. ....++++++||.+.+.+ ..++..+..+..+|.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~ 193 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG 193 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence 31 1234566787777777766532 223468999999987764 234444555566677777
Q ss_pred CCChhcHHHHHHHHHh---cccCCCCCCCC----------C-CCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcC
Q psy15438 154 KLDAINLSKAVEFILS---CCNFDGGFGSR----------P-GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQ 219 (358)
Q Consensus 154 ~~~~~~~~~~v~~L~s---~Q~~dGGf~~~----------p-g~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q 219 (358)
. ....++++++.+ .++.+|+|+.. + +..+++..|.+++.+|...+........+.++||.++|
T Consensus 194 ~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q 270 (292)
T cd02897 194 S---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR 270 (292)
T ss_pred C---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence 3 224455555544 34455677542 1 12356777888888887666323345677889999999
Q ss_pred CCCCcccCCCCCCCChhHHHHHHHHH
Q psy15438 220 LPSGGLNGRPEKLPDVCYSWWVLASL 245 (358)
Q Consensus 220 ~~~GGf~gr~~k~~D~cys~w~~a~L 245 (358)
+++|||..-. -|.+++-+|
T Consensus 271 ~~~Ggf~sTQ-------dt~~al~AL 289 (292)
T cd02897 271 NSLGGFSSTQ-------DTVVALQAL 289 (292)
T ss_pred CCCCCcccHH-------HHHHHHHHH
Confidence 9999997543 356655554
No 45
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.35 E-value=1.1e-12 Score=89.02 Aligned_cols=44 Identities=45% Similarity=0.849 Sum_probs=42.0
Q ss_pred hcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhC
Q psy15438 206 IDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLG 249 (358)
Q Consensus 206 ~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~ 249 (358)
+|++++++||.++|.++|||+++|++++|++||||++++|++||
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999986
No 46
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.33 E-value=1.6e-12 Score=88.25 Aligned_cols=44 Identities=52% Similarity=0.995 Sum_probs=42.1
Q ss_pred hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcc
Q psy15438 158 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITG 201 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg 201 (358)
++++++++||++||++||||+.+|+.++|+++||||+++|+++|
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999999986
No 47
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.29 E-value=1e-09 Score=103.35 Aligned_cols=228 Identities=16% Similarity=0.107 Sum_probs=137.5
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCCC-------CChHHHHHHHHhcCCCCCcccccCCC-CCchhHHHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLDD-------MPQDTIFDFITQCIHPCGGVSASISH-DPHILYTLSAVQIACL 103 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~-------~~~~~~i~~i~~~q~~dGGF~~~~~~-~~~~~~Ty~Al~~L~l 103 (358)
|++....-.++......+..-+...+.... ...++++++|.++|++||||+..++. .++...|.+++.+|..
T Consensus 12 PygC~EQ~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~ 91 (282)
T cd02891 12 PYGCGEQTMSRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQ 91 (282)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHH
Confidence 666444444555444444444444443221 12356889999999999999988876 7899999999999887
Q ss_pred hcccCCCC---hHHHHHHHHhcCCCCCCcccccC---------CCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcc
Q psy15438 104 INREHELP---VDKIVAYVSKLQQPDGSFFGDMY---------GEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171 (358)
Q Consensus 104 l~~~~~~~---~~~~~~~l~s~Q~~dGgf~~~~~---------~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q 171 (358)
......++ .+++++||.+.|++||+|..... ...+...|..++.+|...|......+.++++||.+..
T Consensus 92 a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~ 171 (282)
T cd02891 92 ARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQL 171 (282)
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhc
Confidence 65432233 78899999999999999986422 2344455666777777666644567899999999866
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCc-------ccCCCCCCCChhHHHHHHHH
Q psy15438 172 NFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGG-------LNGRPEKLPDVCYSWWVLAS 244 (358)
Q Consensus 172 ~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GG-------f~gr~~k~~D~cys~w~~a~ 244 (358)
.. ............+|.++|.. ...+++++.+.+.-...++ +.+..+...++--+.+++.+
T Consensus 172 ~~----------~~~~~~~a~la~al~~~g~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all~ 239 (282)
T cd02891 172 DG----------LLDPYALAILAYALALAGDS--TRADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALLA 239 (282)
T ss_pred cc----------CCChHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHHH
Confidence 53 11222334445566777641 2244455555444222222 11222233333344333333
Q ss_pred HHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 245 LHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 245 L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
. +........+.+.+||.+.+.. .|+|
T Consensus 240 ~--~~~~~~~~~~~~~~~L~~~~~~------~~~~ 266 (282)
T cd02891 240 L--LKLGDLEEAGPIAKWLAQQRNS------GGGF 266 (282)
T ss_pred H--HhcCChhhHHHHHHHHHHcCCC------CCCc
Confidence 3 3222223468899999985544 5777
No 48
>KOG0497|consensus
Probab=99.27 E-value=2.2e-10 Score=116.21 Aligned_cols=235 Identities=22% Similarity=0.274 Sum_probs=163.9
Q ss_pred ccccchHHHHHHHHHHHHHhCCCCCC--ChHHHHHHHHhcCC---CC------------CcccccCCCC--CchhHHHHH
Q psy15438 37 MSEYLRMSGMYWGITTLSLLDQLDDM--PQDTIFDFITQCIH---PC------------GGVSASISHD--PHILYTLSA 97 (358)
Q Consensus 37 ~~~~~~~~~~y~~l~~L~lL~~~~~~--~~~~~i~~i~~~q~---~d------------GGF~~~~~~~--~~~~~Ty~A 97 (358)
+.+ +.+|.+-++|.++-..+..++. ...++.+||.+.|. +. |||..+.... +-..+|-=|
T Consensus 412 ~~~-sQ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEa 490 (760)
T KOG0497|consen 412 GFN-SQLWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEA 490 (760)
T ss_pred ecc-hhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHH
Confidence 344 8899999999999887754322 24678899999883 32 3444333211 223455556
Q ss_pred HHHHHHhcc------cCCCChHH---HHHHHHhcCCCCCCcccc----------------cCCCcc-----cchhHHHHH
Q psy15438 98 VQIACLINR------EHELPVDK---IVAYVSKLQQPDGSFFGD----------------MYGEVD-----TRFSFCAVA 147 (358)
Q Consensus 98 l~~L~ll~~------~~~~~~~~---~~~~l~s~Q~~dGgf~~~----------------~~~esd-----~~~ty~al~ 147 (358)
+.+..+++. ...+++++ +++.|..+|..+|||..- +++..+ +.-|-.++.
T Consensus 491 l~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~ 570 (760)
T KOG0497|consen 491 LKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQ 570 (760)
T ss_pred HHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHH
Confidence 666666642 24567776 567799999999999742 122222 333455777
Q ss_pred HHHHhCCCC--------hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCC--hhcHHHHHHHHHh
Q psy15438 148 CLSLLGKLD--------AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLH--EIDADKLAWWLAE 217 (358)
Q Consensus 148 ~l~ll~~~~--------~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~--~~~~~~~~~wL~~ 217 (358)
+|....+.- ...++++++||.+.|.+||+|-++++. --...|+.|+.+|...|+.. -..++++++||++
T Consensus 571 aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~ 649 (760)
T KOG0497|consen 571 ALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLS 649 (760)
T ss_pred HHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHh
Confidence 777765531 135788999999999999999888772 11233567788888888742 2458899999999
Q ss_pred cCCCCCcccCCCCC------------CCChhHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 218 RQLPSGGLNGRPEK------------LPDVCYSWWVLASLHMLGRGTW--INSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 218 ~Q~~~GGf~gr~~k------------~~D~cys~w~~a~L~ll~~~~~--~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
.|.++|||+..+-. ...+-.|+|++.+|-+.++... .-..++.+.|...|.. +|-|
T Consensus 650 ~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~------nGdf 719 (760)
T KOG0497|consen 650 KQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLE------NGDF 719 (760)
T ss_pred hhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccc------cCCc
Confidence 99999999876532 3457799999999988887532 2468999999999987 6888
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.17 E-value=2.1e-11 Score=98.63 Aligned_cols=104 Identities=23% Similarity=0.396 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCC-ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHH
Q psy15438 113 DKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL-DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191 (358)
Q Consensus 113 ~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~-~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~ 191 (358)
+++++||.+.|++||||... . +.+...|++++.++..++.. ....++++++||+++|++||||+..+.. +...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~-~-~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~~--~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYN-W-GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGGE--YVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred cccccccccccccccccccc-c-cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCCC--CHHHHH
Confidence 57899999999999999864 2 36677888888888877642 3456899999999999999999987432 344566
Q ss_pred HHHHHHHhcccC-ChhcHHHHHHHHHhcCC
Q psy15438 192 CCVGFLSITGHL-HEIDADKLAWWLAERQL 220 (358)
Q Consensus 192 calasL~llg~~-~~~~~~~~~~wL~~~Q~ 220 (358)
.++.+|.+.+.. +...++++++||.+.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 667777666542 33458899999998874
No 50
>KOG0497|consensus
Probab=99.16 E-value=2.3e-10 Score=116.14 Aligned_cols=164 Identities=27% Similarity=0.371 Sum_probs=124.5
Q ss_pred CChHH---HHHHHHhcCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhccc-C-----C--
Q psy15438 62 MPQDT---IFDFITQCIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINRE-H-----E-- 109 (358)
Q Consensus 62 ~~~~~---~i~~i~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~-~-----~-- 109 (358)
.+.++ +++.|+.+|..+|||....- ..+-+-+|-+++++|...+.. + +
T Consensus 509 ~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~ 588 (760)
T KOG0497|consen 509 IDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIE 588 (760)
T ss_pred CCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHH
Confidence 45555 67778999999999976421 135677899999999988642 2 1
Q ss_pred CChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCC--ChhcHHHHHHHHHhcccCCCCCCCCC------
Q psy15438 110 LPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL--DAINLSKAVEFILSCCNFDGGFGSRP------ 181 (358)
Q Consensus 110 ~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~--~~~~~~~~v~~L~s~Q~~dGGf~~~p------ 181 (358)
-..+++++||.+.|.+||+|.++ ++-.-+..|+-|+-++...|.. +-..++++++||++.|+.|||||..+
T Consensus 589 ~~i~~av~~ie~~Q~~DGSWyGs-WgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~ 667 (760)
T KOG0497|consen 589 KSIEKAVEFIEKLQLPDGSWYGS-WGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEK 667 (760)
T ss_pred HHHHHHHHHHHHcCCCCCcccch-hhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccc
Confidence 13568999999999999999874 4433333444455566666652 34678999999999999999999864
Q ss_pred ------CCCCcccHHHHHHHHHHhcccCCh--hcHHHHHHHHHhcCCCCCccc
Q psy15438 182 ------GSESHAGLTYCCVGFLSITGHLHE--IDADKLAWWLAERQLPSGGLN 226 (358)
Q Consensus 182 ------g~esh~~~T~calasL~llg~~~~--~~~~~~~~wL~~~Q~~~GGf~ 226 (358)
|..+++..|.||+.+|.+.++... ....|++..|...|..+|-|.
T Consensus 668 ~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfp 720 (760)
T KOG0497|consen 668 RYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFP 720 (760)
T ss_pred cccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcc
Confidence 345888899999999999987643 368899999999999988775
No 51
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.11 E-value=6.7e-11 Score=95.67 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcc-cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhH
Q psy15438 65 DTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINR-EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSF 143 (358)
Q Consensus 65 ~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~-~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty 143 (358)
+++++||.+.|++||||....+ +++..|++++.+|..++. .....++++++||.++|++||||...+ ......|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred cccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHHH
Confidence 5789999999999999986533 678888888888888764 233457899999999999999999762 22333444
Q ss_pred HHHHHHHHhCC-CChhcHHHHHHHHHhccc
Q psy15438 144 CAVACLSLLGK-LDAINLSKAVEFILSCCN 172 (358)
Q Consensus 144 ~al~~l~ll~~-~~~~~~~~~v~~L~s~Q~ 172 (358)
.++.++.+.+. .+...++++++||++.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 55555544433 245679999999999864
No 52
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.87 E-value=6.5e-08 Score=89.95 Aligned_cols=190 Identities=21% Similarity=0.223 Sum_probs=117.0
Q ss_pred HHHHHhcCCCCCccccc-CCCCCchhHHHHHHHHHHHhcccCCCC---hHHHHHHHHhcCCCCCCcccccC-------CC
Q psy15438 68 FDFITQCIHPCGGVSAS-ISHDPHILYTLSAVQIACLINREHELP---VDKIVAYVSKLQQPDGSFFGDMY-------GE 136 (358)
Q Consensus 68 i~~i~~~q~~dGGF~~~-~~~~~~~~~Ty~Al~~L~ll~~~~~~~---~~~~~~~l~s~Q~~dGgf~~~~~-------~e 136 (358)
.+=+++.|++||||+.. ....++...|.+++.+|....+.-.+| +.++++||.+.|++||+|..... +.
T Consensus 3 Yqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~ 82 (246)
T PF07678_consen 3 YQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGG 82 (246)
T ss_dssp HHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGG
T ss_pred hHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCC
Confidence 34567889999999998 566789999988898888877654444 56889999999999999975311 11
Q ss_pred cccchhHHHHHHHHHhCC--C-------ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHH--HHHhcccCCh
Q psy15438 137 VDTRFSFCAVACLSLLGK--L-------DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVG--FLSITGHLHE 205 (358)
Q Consensus 137 sd~~~ty~al~~l~ll~~--~-------~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~cala--sL~llg~~~~ 205 (358)
.+-..+..|.+..+|+.. . ....++++++||.+.... ..-.|+- |+. +|.+.+ +.
T Consensus 83 ~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-----------~~~~Y~l-Al~aYAL~la~--~~ 148 (246)
T PF07678_consen 83 VEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN-----------IQDPYTL-ALVAYALALAG--DS 148 (246)
T ss_dssp GTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-----------TSSHHHH-HHHHHHHHHTT--TC
T ss_pred CCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc-----------cCCHHHH-HHHHHHHHhhc--cc
Confidence 122223333333334322 1 134688999999775211 0112322 233 345555 34
Q ss_pred hcHHHHHHHHHhcCCCCCcccCCCCC--------------CCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCC
Q psy15438 206 IDADKLAWWLAERQLPSGGLNGRPEK--------------LPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNT 271 (358)
Q Consensus 206 ~~~~~~~~wL~~~Q~~~GGf~gr~~k--------------~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~ 271 (358)
.+.+++.+-|.++...+||....+.. ..|+.-|-+++.++...+ +......+.+||.+.|+.
T Consensus 149 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~~--~~~~~~~iv~WL~~qr~~-- 224 (246)
T PF07678_consen 149 PQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKRG--DLEEASPIVRWLISQRNS-- 224 (246)
T ss_dssp HHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCTTT--
T ss_pred chHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhcCC--
Confidence 45677777787776655554222211 134666767665555553 334578999999998887
Q ss_pred CccccCCc
Q psy15438 272 FYFEMGVF 279 (358)
Q Consensus 272 ~~~~~GGf 279 (358)
.|||
T Consensus 225 ----~Ggf 228 (246)
T PF07678_consen 225 ----GGGF 228 (246)
T ss_dssp ----TSST
T ss_pred ----CCcc
Confidence 7999
No 53
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.80 E-value=8.7e-07 Score=83.41 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=128.9
Q ss_pred cccchHHHHHHHHHhhcCCCCccccccc-cchHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHhcCCCCCcccccCC-
Q psy15438 12 KEFLGTKHAEYIKKYSDNKEDYEYCMSE-YLRMSGMYWGITTLSLLDQLDDM---PQDTIFDFITQCIHPCGGVSASIS- 86 (358)
Q Consensus 12 ~~l~~~~h~~yl~~~~~~~~~~~~~~~~-~~~~~~~y~~l~~L~lL~~~~~~---~~~~~i~~i~~~q~~dGGF~~~~~- 86 (358)
..-.+++-++.|.+.+...+.++++... .+.+|.|.+++.+|...+....+ ..+++++||.+.|+++|+|.....
T Consensus 47 ~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~ 126 (282)
T cd02891 47 ALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPV 126 (282)
T ss_pred HHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCc
Confidence 3446677888888888766666666555 77899999999999987653222 267899999999999999976432
Q ss_pred --------CCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChh
Q psy15438 87 --------HDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAI 158 (358)
Q Consensus 87 --------~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~ 158 (358)
..+.+..|..++.+|...+........++++||.+.... ..+.........++.+.|. ..
T Consensus 127 ~~~~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~ 194 (282)
T cd02891 127 IHREMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--ST 194 (282)
T ss_pred cCHhhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cH
Confidence 235556787777777766643334577899999986643 1122223334455566664 23
Q ss_pred cHHHHHHHHHhcccCCCCC-------CCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCC
Q psy15438 159 NLSKAVEFILSCCNFDGGF-------GSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEK 231 (358)
Q Consensus 159 ~~~~~v~~L~s~Q~~dGGf-------~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k 231 (358)
..+++++-|...-...++. ....+.....-.|..+ .|..+...+.....+++.||.+.+...|+|..
T Consensus 195 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~a--ll~~~~~~~~~~~~~~~~~L~~~~~~~~~~~s---- 268 (282)
T cd02891 195 RADEALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYA--LLALLKLGDLEEAGPIAKWLAQQRNSGGGFLS---- 268 (282)
T ss_pred HHHHHHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHH--HHHHHhcCChhhHHHHHHHHHHcCCCCCCccc----
Confidence 3455555555543333321 1111221222223333 33333321233567899999986666777754
Q ss_pred CCChhHHHHHHHHH
Q psy15438 232 LPDVCYSWWVLASL 245 (358)
Q Consensus 232 ~~D~cys~w~~a~L 245 (358)
+--|.|++-+|
T Consensus 269 ---Tq~t~~al~AL 279 (282)
T cd02891 269 ---TQDTVVALQAL 279 (282)
T ss_pred ---HHHHHHHHHHH
Confidence 33466665554
No 54
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.65 E-value=3.4e-07 Score=85.17 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=109.3
Q ss_pred ccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHhcCCCCCcccccCC---------CCCchhHHHHHHHHHHHh
Q psy15438 37 MSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQCIHPCGGVSASIS---------HDPHILYTLSAVQIACLI 104 (358)
Q Consensus 37 ~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~~q~~dGGF~~~~~---------~~~~~~~Ty~Al~~L~ll 104 (358)
...++..|+|-|++..|....+.-.++ .+++++||.+.|++||.|..... ...++..| |...++++
T Consensus 21 ~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lT--A~VliAL~ 98 (246)
T PF07678_consen 21 SDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALT--AYVLIALL 98 (246)
T ss_dssp TTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHH--HHHHHHHH
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeeh--HHHHHHHH
Confidence 456788999999999999998764443 46899999999999999975321 12345555 55445554
Q ss_pred ccc---------CCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHH-HHH--HHHHhCCCChhcHHHHHHHHHhccc
Q psy15438 105 NRE---------HELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFC-AVA--CLSLLGKLDAINLSKAVEFILSCCN 172 (358)
Q Consensus 105 ~~~---------~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~-al~--~l~ll~~~~~~~~~~~v~~L~s~Q~ 172 (358)
... ....++++++||.+.. ......|. |+. +|.+.+ +....+++.+-|.+...
T Consensus 99 e~~~~~~~~~~~~~~~i~kA~~~L~~~~-------------~~~~~~Y~lAl~aYAL~la~--~~~~~~~~~~~L~~~a~ 163 (246)
T PF07678_consen 99 EAGSLCDSEKPEYENAINKALNYLERHL-------------DNIQDPYTLALVAYALALAG--DSPQASKLLNKLNSMAT 163 (246)
T ss_dssp HCHCCHTTTHHCHHHHHHHHHHHHHHHH-------------GCTSSHHHHHHHHHHHHHTT--TCHHHHHHHHHHHCHCE
T ss_pred hhhhhccccchhhHHHHHHHHHHHHHhc-------------cccCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHhhh
Confidence 321 1234678999997651 11222333 333 344444 45777888899988877
Q ss_pred CCCCCCCCCCCC--------------CcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccC
Q psy15438 173 FDGGFGSRPGSE--------------SHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 173 ~dGGf~~~pg~e--------------sh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
.+|+...-+..+ .++..|.+|+.++... .+.......++||.+.|+..|||..
T Consensus 164 ~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 164 TEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGGGFGS 230 (246)
T ss_dssp ETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTSSTSS
T ss_pred hccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCCccCc
Confidence 776642211111 2345566666444333 3445677899999999999999975
No 55
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.38 E-value=1e-06 Score=88.69 Aligned_cols=173 Identities=18% Similarity=0.203 Sum_probs=114.9
Q ss_pred hCCCCCCChHHHHHHHHhcCCCCCcccccCC-------------------CCCchhHHHHHHHHHHHhccc-C---CCCh
Q psy15438 56 LDQLDDMPQDTIFDFITQCIHPCGGVSASIS-------------------HDPHILYTLSAVQIACLINRE-H---ELPV 112 (358)
Q Consensus 56 L~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~-------------------~~~~~~~Ty~Al~~L~ll~~~-~---~~~~ 112 (358)
....+..+-++.++||..+|+..|||...+. ..+.+..|-.-+..|+.++.. + ....
T Consensus 275 ~~~~~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i 354 (517)
T COG1657 275 IGVQSLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPI 354 (517)
T ss_pred HhhcchhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcc
Confidence 3333445566799999999999999976431 112333444445555555432 2 3568
Q ss_pred HHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCC--hhcHHHHHHHHHhcccCCCCCCCCCCCC------
Q psy15438 113 DKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLD--AINLSKAVEFILSCCNFDGGFGSRPGSE------ 184 (358)
Q Consensus 113 ~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~--~~~~~~~v~~L~s~Q~~dGGf~~~pg~e------ 184 (358)
++++.||.+.|.++|.|.+. ++..-+..+.-++.++++.|..+ ...+.+++.|+.++|.+||||+.....-
T Consensus 355 ~~a~e~LL~~Q~~~GsW~g~-w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~ 433 (517)
T COG1657 355 ERALEWLLSDQEPDGSWYGR-WGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYT 433 (517)
T ss_pred cHHHhhhhhhccccCceeeE-EEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccc
Confidence 89999999999999999863 33334444445556666666532 3468899999999999999999753322
Q ss_pred ----CcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCC
Q psy15438 185 ----SHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRP 229 (358)
Q Consensus 185 ----sh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~ 229 (358)
+-.-.|-||+..+....+.....+++.++.+.++|.++|-+..++
T Consensus 434 ~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~~ 482 (517)
T COG1657 434 GTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREAE 482 (517)
T ss_pred cccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccce
Confidence 222335677766665555444446778899999999887666544
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.30 E-value=2.2e-06 Score=86.34 Aligned_cols=226 Identities=19% Similarity=0.160 Sum_probs=139.0
Q ss_pred cccchHHHHHHHHHHHHHhCCCCC--CChHHHHHHHHhcC------------CCCCcccccCC--CCCchhHHHHHHHHH
Q psy15438 38 SEYLRMSGMYWGITTLSLLDQLDD--MPQDTIFDFITQCI------------HPCGGVSASIS--HDPHILYTLSAVQIA 101 (358)
Q Consensus 38 ~~~~~~~~~y~~l~~L~lL~~~~~--~~~~~~i~~i~~~q------------~~dGGF~~~~~--~~~~~~~Ty~Al~~L 101 (358)
...+..|.+.|....+.--+..+. ...-++..|+...| ...|||+.... ..++...|-.++..+
T Consensus 195 ~l~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al 274 (517)
T COG1657 195 LLGSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLDKQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRAL 274 (517)
T ss_pred ccccccccchhhhhhhhhcCccccchHhHHhhhhhhHHHHHHHhhccccccccCCCccceeecccCCCCchhhhHHHHHH
Confidence 345667888888888776663211 12233334443332 23566665543 568888886666666
Q ss_pred HHhcccCCCChHHHHHHHHhcCCCCCCcccccC------------C----Ccccchh---HHHHHHHHHhCCC-C---hh
Q psy15438 102 CLINREHELPVDKIVAYVSKLQQPDGSFFGDMY------------G----EVDTRFS---FCAVACLSLLGKL-D---AI 158 (358)
Q Consensus 102 ~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~------------~----esd~~~t---y~al~~l~ll~~~-~---~~ 158 (358)
....+. .+.+++++|+..+|+..|||..... + +.+.... -..+.++..++.. + ..
T Consensus 275 ~~~~~~--~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~ 352 (517)
T COG1657 275 IGVQSL--PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQ 352 (517)
T ss_pred Hhhcch--hhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCC
Confidence 555433 4567799999999999999986421 0 1111111 1133334444432 2 36
Q ss_pred cHHHHHHHHHhcccCCCCCCCCCCCCCcccHH---HHHHHHHHhcccCC--hhcHHHHHHHHHhcCCCCCcccCCCCCCC
Q psy15438 159 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLT---YCCVGFLSITGHLH--EIDADKLAWWLAERQLPSGGLNGRPEKLP 233 (358)
Q Consensus 159 ~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T---~calasL~llg~~~--~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~ 233 (358)
.++++++||++.|.++|.|-++.+ .+++ .-++.+|++.+..+ ..-+.+++.||..+|.++|||+.--...+
T Consensus 353 ~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~ 428 (517)
T COG1657 353 PIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAIS 428 (517)
T ss_pred cccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccc
Confidence 799999999999999999887764 3444 44455566666543 23478899999999999999998777666
Q ss_pred ChhHH----------HHHHHHHHHhCCCCCCCHHHHHHHHHHhcCC
Q psy15438 234 DVCYS----------WWVLASLHMLGRGTWINSAALRKFILASQVR 269 (358)
Q Consensus 234 D~cys----------~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~ 269 (358)
|..|+ -|++..+..-.....--.+...+++.+.|.+
T Consensus 429 ~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~ 474 (517)
T COG1657 429 DPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEP 474 (517)
T ss_pred ccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCC
Confidence 65443 3666554433332111134456677777766
No 57
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.32 E-value=0.018 Score=61.70 Aligned_cols=257 Identities=14% Similarity=0.162 Sum_probs=136.5
Q ss_pred HHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCC--CCCchhHH
Q psy15438 17 TKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASIS--HDPHILYT 94 (358)
Q Consensus 17 ~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~--~~~~~~~T 94 (358)
+..++-|++.+....++. -+.....|-| |+-.--++......=-+.++||+..|.+||||+.... ..-.+..|
T Consensus 75 ~~~~~~ir~~l~~~~~g~----~S~S~YDTAW-VAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~T 149 (800)
T PLN02592 75 KERVKTVKSMLSSMEDGE----ISISAYDTAW-VALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINT 149 (800)
T ss_pred HHHHHHHHHHHhcccCCC----cCCcHHHhHH-HhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhH
Confidence 345666666555432311 1344566888 2222222211112224799999999999999987532 12457888
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHhcC---C-CC-----CCcccc---------------cCCCcccchhHHHHHHHH
Q psy15438 95 LSAVQIACLINREHELPVDKIVAYVSKLQ---Q-PD-----GSFFGD---------------MYGEVDTRFSFCAVACLS 150 (358)
Q Consensus 95 y~Al~~L~ll~~~~~~~~~~~~~~l~s~Q---~-~d-----Ggf~~~---------------~~~esd~~~ty~al~~l~ 150 (358)
.+||.+|.--+. ....+++.+.||.+.- . ++ =||.-. |....++...+. .-.+.
T Consensus 150 LAcvlAL~~w~~-~~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~-~r~~k 227 (800)
T PLN02592 150 LACVVALKSWNL-HPEKCEKGMSFFRENICKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYA-QRNLK 227 (800)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHH-hhHHH
Confidence 888877754321 1223467778877532 0 10 133210 111110100000 00000
Q ss_pred HhCCCCh-------h----cHHHH--HHH--HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHH
Q psy15438 151 LLGKLDA-------I----NLSKA--VEF--ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWL 215 (358)
Q Consensus 151 ll~~~~~-------~----~~~~~--v~~--L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL 215 (358)
+ .+... . ..|.. ++| ++..|..||+|..+|- .|.+++. .. --+++.+||
T Consensus 228 L-~r~~~~~~~~~p~~llhslEgl~~~dw~~v~~~q~~~GS~~~SPS------aTAaaL~-----~~----~d~~cl~YL 291 (800)
T PLN02592 228 L-TRIPKDIMHKVPTTLLHSLEGMPGLDWEKLLKLQCQDGSFLFSPS------STAFALM-----QT----KDENCLEYL 291 (800)
T ss_pred H-hhCchhhhccCcchHHHHHhccccCCHHHHhcccCCCCCccCCch------HHHHHHh-----cc----CchHHHHHH
Confidence 0 00000 0 00111 122 5667888999998774 3544432 11 125678898
Q ss_pred HhcCCCCCcccCCCCC-CCChhHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHhcCCCCCccccC-CccCCCCCCccccc
Q psy15438 216 AERQLPSGGLNGRPEK-LPDVCYSWWVLASLHMLGRGTWI--NSAALRKFILASQVRNTFYFEMG-VFSDKIPVCGVHYV 291 (358)
Q Consensus 216 ~~~Q~~~GGf~gr~~k-~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~~ll~~Q~~~~~~~~~G-Gf~~~~p~~~~~~~ 291 (358)
.+....-| +|.|.- +.|....-|.+-+|.-||-.... ..+.+.++|.++-.. .| |+
T Consensus 292 ~~~~~k~~--GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~------~g~~~------------ 351 (800)
T PLN02592 292 NKAVQRFN--GGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTE------NGICW------------ 351 (800)
T ss_pred HHHHHHcC--CCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhh------cCccc------------
Confidence 76544322 235655 56888889999999999864322 235566666665333 12 33
Q ss_pred ccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCC
Q psy15438 292 DYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
.. +...+|++.|-.+.-.|.+.|++
T Consensus 352 --------------------a~-~~~~~Dld~TALaFRLLRqhGy~ 376 (800)
T PLN02592 352 --------------------AR-NSHVHDIDDTAMGFRLLRLHGHQ 376 (800)
T ss_pred --------------------cc-CCCcCCHHHHHHHHHHHHHcCCC
Confidence 21 12357999999999999999983
No 58
>PLN02279 ent-kaur-16-ene synthase
Probab=97.29 E-value=0.042 Score=59.09 Aligned_cols=255 Identities=13% Similarity=0.024 Sum_probs=139.9
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCCC----C
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISH----D 88 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~----~ 88 (358)
.+..+.+++-|++.+.+.+ -+.....|-|....=.. +......=.++++||+..|.+||+|+..+.. .
T Consensus 32 ~~~~~~~~~~i~~~l~~~e-------~s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~ 103 (784)
T PLN02279 32 NVSFEGTKERIKKMFDKVE-------LSVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVK 103 (784)
T ss_pred cccchhHHHHHHHHhccCc-------CCCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhH
Confidence 4566888999998876431 12334567776554443 3222222357999999999999999865322 2
Q ss_pred CchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcC----CCC----CCccc-ccC--------CCcccchhHHHHHH-H-
Q psy15438 89 PHILYTLSAVQIACLINREHELPVDKIVAYVSKLQ----QPD----GSFFG-DMY--------GEVDTRFSFCAVAC-L- 149 (358)
Q Consensus 89 ~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q----~~d----Ggf~~-~~~--------~esd~~~ty~al~~-l- 149 (358)
-.+.+|.++|.+|.--+.- ...+++.+.||.+-- ..+ =||.- .|. | -+..+--..+.. +
T Consensus 104 D~ll~TlAcvlAL~~w~~~-~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~g-l~~~~~~~~l~~~~~ 181 (784)
T PLN02279 104 DALSSTLASILALKKWGVG-EEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLD-LNLPLGSEVVDAMLH 181 (784)
T ss_pred HhhHHHHHHHHHHHHHhcC-cccchhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcC-CCCCCChHHHHHHHH
Confidence 3567898888877654321 223455667776321 111 12321 010 0 000000011100 0
Q ss_pred ----HHhC--------CCCh--hcHHH---HHHH--HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHH
Q psy15438 150 ----SLLG--------KLDA--INLSK---AVEF--ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK 210 (358)
Q Consensus 150 ----~ll~--------~~~~--~~~~~---~v~~--L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~ 210 (358)
.+.. .... -..|. .++| |+..|..||+|..+|. .|.+++. .. -| ++
T Consensus 182 ~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SPs------aTAa~l~-----~~---~~-~~ 246 (784)
T PLN02279 182 KRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPS------TTAAAFS-----HL---QN-AG 246 (784)
T ss_pred hhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCcH------HHHHHHH-----cc---CC-hH
Confidence 0000 0000 00111 1122 5677889999998764 3444432 11 12 67
Q ss_pred HHHHHHhcCCCCCcccCCCCC-CCChhHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHhcCCCCCccccCCccCCCCCCc
Q psy15438 211 LAWWLAERQLPSGGLNGRPEK-LPDVCYSWWVLASLHMLGRGTWI--NSAALRKFILASQVRNTFYFEMGVFSDKIPVCG 287 (358)
Q Consensus 211 ~~~wL~~~Q~~~GGf~gr~~k-~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~ 287 (358)
+.+||.+.+...| ++.|+- +.|....-|.+-+|.-+|-...+ ..+.+.+.+.++... |+
T Consensus 247 ~~~yL~~~~~~~~--g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~-------~~--------- 308 (784)
T PLN02279 247 CLRYLRSLLQKFG--NAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQ-------GE--------- 308 (784)
T ss_pred HHHHHHHHHHhcC--CCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcc-------cc---------
Confidence 8889977655433 256665 56888999999999999864322 123344444332211 11
Q ss_pred ccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCC
Q psy15438 288 VHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
++..+|++.|-.+.--|.+.|++
T Consensus 309 ---------------------------~~~~~Dl~~tAl~FRLLR~hGy~ 331 (784)
T PLN02279 309 ---------------------------EEIFLDLATCALAFRILRLNGYD 331 (784)
T ss_pred ---------------------------cCCCCCHHHHHHHHHHHHHcCCC
Confidence 23357999999999999999873
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.92 E-value=0.0045 Score=58.54 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhccc-----CCCChHHHHHHHHhcCCCCCCcccc-cC-CCcccchhHH---HHHHHHHhCC-------
Q psy15438 92 LYTLSAVQIACLINRE-----HELPVDKIVAYVSKLQQPDGSFFGD-MY-GEVDTRFSFC---AVACLSLLGK------- 154 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~~-----~~~~~~~~~~~l~s~Q~~dGgf~~~-~~-~esd~~~ty~---al~~l~ll~~------- 154 (358)
..|+..+.-|+-+-.. .+....++++||++.|.++|||... |. +...-..||. .+.++.+|..
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDP 123 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCC
Confidence 3566677777665211 1223578999999999999999864 21 1222222332 2233333311
Q ss_pred ---CC-------hhcHHHHHHHHHhcccCCCCCCCCC
Q psy15438 155 ---LD-------AINLSKAVEFILSCCNFDGGFGSRP 181 (358)
Q Consensus 155 ---~~-------~~~~~~~v~~L~s~Q~~dGGf~~~p 181 (358)
.+ ...++++++||+++|-.+||+-..+
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~W 160 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVW 160 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCch
Confidence 01 2357899999999998888665443
No 60
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.19 E-value=0.021 Score=54.07 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=42.2
Q ss_pred hHHHHHHHHhcCCCCCcccccCC----CC-----CchhHHHHHHHHHHHhccc----C----------CCChHHHHHHHH
Q psy15438 64 QDTIFDFITQCIHPCGGVSASIS----HD-----PHILYTLSAVQIACLINRE----H----------ELPVDKIVAYVS 120 (358)
Q Consensus 64 ~~~~i~~i~~~q~~dGGF~~~~~----~~-----~~~~~Ty~Al~~L~ll~~~----~----------~~~~~~~~~~l~ 120 (358)
-+++++||++.|+++|||..... .. .|-.+. ..+..|..+... . ....+|+++||+
T Consensus 69 ~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~-~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~IL 147 (290)
T TIGR02474 69 ARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMV-NVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECIL 147 (290)
T ss_pred HHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHH-HHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999986431 11 222222 344444333110 1 113578999999
Q ss_pred hcCCCCCCccc
Q psy15438 121 KLQQPDGSFFG 131 (358)
Q Consensus 121 s~Q~~dGgf~~ 131 (358)
+.|-++||+..
T Consensus 148 ktQ~~~gg~~t 158 (290)
T TIGR02474 148 KTQVVQNGKLT 158 (290)
T ss_pred HhhcccCCcCC
Confidence 99999887653
No 61
>KOG1366|consensus
Probab=95.86 E-value=0.16 Score=58.01 Aligned_cols=224 Identities=18% Similarity=0.205 Sum_probs=120.7
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHh-------cCCCCCcccccCC--CCCchhHHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQ-------CIHPCGGVSASIS--HDPHILYTLSAVQIAC 102 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~-------~q~~dGGF~~~~~--~~~~~~~Ty~Al~~L~ 102 (358)
|++...++-..+.-.++.+.=|...+......+++++++|.. .+++||.|...-. ..+..+-|.+.+.++.
T Consensus 934 P~GcGEQnMi~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~ 1013 (1436)
T KOG1366|consen 934 PYGCGEQNMINFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFS 1013 (1436)
T ss_pred CCCcccceeecccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhh
Confidence 666555555555667788888888887766677888888863 3478999876544 3344444544444444
Q ss_pred Hhccc---CCCChHHHHHHHHhcCCCCCCccccc--------CCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcc
Q psy15438 103 LINRE---HELPVDKIVAYVSKLQQPDGSFFGDM--------YGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171 (358)
Q Consensus 103 ll~~~---~~~~~~~~~~~l~s~Q~~dGgf~~~~--------~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q 171 (358)
.-.+. +.--..++++|+...|.++|+|.... ++..+. .+..+...-.++.. +...+.++++|+.+.-
T Consensus 1014 ~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~-~~l~~~~l~~~~~~-~~~~~~~a~~~~~~~~ 1091 (1436)
T KOG1366|consen 1014 QAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDI-VALTAIVLSVILDV-DNASIQKAVAYLEESL 1091 (1436)
T ss_pred hccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCCc-ceeeeEeeeeeccc-hhhHHHHHHHHHhhcc
Confidence 44332 22235789999999999999997531 233333 11111111111110 1234667777776533
Q ss_pred cCCCCCCCCCCCCCcccHHHHHHH--HHHhcccCChhcHHHHHHHHHhcCCCCC----cccC----------CC-CCCCC
Q psy15438 172 NFDGGFGSRPGSESHAGLTYCCVG--FLSITGHLHEIDADKLAWWLAERQLPSG----GLNG----------RP-EKLPD 234 (358)
Q Consensus 172 ~~dGGf~~~pg~esh~~~T~cala--sL~llg~~~~~~~~~~~~wL~~~Q~~~G----Gf~g----------r~-~k~~D 234 (358)
+.+ .. +. +| .|+. ||.+.+.. .....+.. |...-...| .|.. .+ ....|
T Consensus 1092 --~~~-~~------~~-~~-~a~~ayAl~l~~sp--~a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~ 1157 (1436)
T KOG1366|consen 1092 --DSG-SM------DV-YT-VAITAYALQLAKSP--QAAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSPQARSID 1157 (1436)
T ss_pred --Ccc-cc------cc-ch-HHHHHHHHHhccCc--hHHHHHHh-hhhhhcccCCceeeeeccccccCcccCCCccchhh
Confidence 222 11 11 11 1222 33333332 11221111 221111111 1110 11 12356
Q ss_pred hhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 235 VCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 235 ~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
+..|-+++-++.++.+.+ -...+.+||.+-|+. .|||
T Consensus 1158 VE~tsYaLL~~~~~~~~~--~~~pivrWl~~qr~~------~GGf 1194 (1436)
T KOG1366|consen 1158 VETTAYALLAYLLLAQVD--YALPIVRWLVEQRNA------LGGF 1194 (1436)
T ss_pred ccchHHHHHHHHHhcccC--cCchhHhhhhhhhcc------cCce
Confidence 777777777777777654 457899999998887 7999
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=91.41 E-value=0.77 Score=44.32 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHHhcccCCC----------ChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCC-C--
Q psy15438 90 HILYTLSAVQIACLINREHEL----------PVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL-D-- 156 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~~~~~----------~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~-~-- 156 (358)
.+..+..|+.+|..+.+.... ..+++++.|.+.|.+||.|+ ++++|--|+.+|...+.. .
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~ 257 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSES 257 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHH
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcch
Confidence 455664455555555321111 24677888999999999998 456677777777666552 2
Q ss_pred hhcHHHHHHHHHhcccCCCCCCC
Q psy15438 157 AINLSKAVEFILSCCNFDGGFGS 179 (358)
Q Consensus 157 ~~~~~~~v~~L~s~Q~~dGGf~~ 179 (358)
..+..++.++|++.. .+|.|..
T Consensus 258 ~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 258 EWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHHHHHH-TTTTT-S
T ss_pred hhHHHHHHHHHHHHh-hcCCCCC
Confidence 257889999999855 5899964
No 63
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=87.90 E-value=0.76 Score=43.64 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcccC-----CCChHHHHHHHHhcCCCCCCcccc-cC-CCcccchhH---HHHHHHHHh----CC---
Q psy15438 92 LYTLSAVQIACLINREH-----ELPVDKIVAYVSKLQQPDGSFFGD-MY-GEVDTRFSF---CAVACLSLL----GK--- 154 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~~~-----~~~~~~~~~~l~s~Q~~dGgf~~~-~~-~esd~~~ty---~al~~l~ll----~~--- 154 (358)
..|...+.-|+-+-... +....++++||++.|-++|||... |. +..+-..|| ..+.++.+| ..
T Consensus 39 ~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~ 118 (289)
T PF09492_consen 39 DATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGD 118 (289)
T ss_dssp GTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TT
T ss_pred hhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCC
Confidence 35666777777653221 123578999999999999999864 32 112222233 223344444 11
Q ss_pred C---C-------hhcHHHHHHHHHhcccC
Q psy15438 155 L---D-------AINLSKAVEFILSCCNF 173 (358)
Q Consensus 155 ~---~-------~~~~~~~v~~L~s~Q~~ 173 (358)
. + ...+++++++|+++|-.
T Consensus 119 ~~~v~~~~~~r~~~A~~kgi~ciL~tQi~ 147 (289)
T PF09492_consen 119 FAFVDESLRARARAAVDKGIDCILKTQIR 147 (289)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHHS-E
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 1 13578899999999973
No 64
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=87.18 E-value=2 Score=41.60 Aligned_cols=60 Identities=23% Similarity=0.181 Sum_probs=42.3
Q ss_pred cHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCCh---hcHHHHHHHHHhcCCCCCccc
Q psy15438 159 NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE---IDADKLAWWLAERQLPSGGLN 226 (358)
Q Consensus 159 ~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~---~~~~~~~~wL~~~Q~~~GGf~ 226 (358)
.++++++.|++.|.+||-||. ..+|--|+.+|...+.... .+-.++.++|+.. .++|.|+
T Consensus 216 ~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~ 278 (326)
T PF01122_consen 216 AIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQ 278 (326)
T ss_dssp HHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-
T ss_pred HHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCC
Confidence 367788889999999999984 5678889999988886432 3567788888774 3578886
No 65
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=85.63 E-value=54 Score=34.91 Aligned_cols=116 Identities=13% Similarity=0.192 Sum_probs=80.4
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHH
Q psy15438 40 YLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYV 119 (358)
Q Consensus 40 ~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l 119 (358)
.+.+..+||++.+|..||.. ..+.+++.+++.+.-.+. ..++...|.|+.+...|+.... -..++.+-+
T Consensus 46 ~~dLes~yyav~glk~Lg~~-~~~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~~-~~~~~~~~l 114 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIK-VPDSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKVS-VSNEVKSLL 114 (636)
T ss_pred cccHHHHHHHHhhHHHhCCC-CCChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCccc-CcHHHHHHH
Confidence 46678899999999999963 334788999998764331 1357888999999998874322 133444444
Q ss_pred HhcCCCCCCcccccCCCcccchhHHHHHHHHHhCC-CChhcHHHHHHHHHhcccCCCC
Q psy15438 120 SKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGK-LDAINLSKAVEFILSCCNFDGG 176 (358)
Q Consensus 120 ~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~-~~~~~~~~~v~~L~s~Q~~dGG 176 (358)
...-++ ++++...|.++.++..+|. .+..+.++.++-|...+..|.+
T Consensus 115 ~~~l~~----------~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdds 162 (636)
T PF05817_consen 115 KAALSE----------DSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDDS 162 (636)
T ss_pred HHHhcC----------CccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccccc
Confidence 443322 2355568999999999985 2235788888888877776543
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=85.29 E-value=2.3 Score=46.08 Aligned_cols=76 Identities=13% Similarity=0.057 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCCC--CcccHHHHHHHHHHhcccCChhcHHHHHHHHH
Q psy15438 139 TRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSE--SHAGLTYCCVGFLSITGHLHEIDADKLAWWLA 216 (358)
Q Consensus 139 ~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~e--sh~~~T~calasL~llg~~~~~~~~~~~~wL~ 216 (358)
++-|.++.++-. ++....+....+++||++.|.+|||||..+..- --...|..||-||.--+. ....+++++.||.
T Consensus 97 ~YDTAWVAmVp~-~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fi~ 174 (800)
T PLN02592 97 AYDTAWVALVED-INGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNL-HPEKCEKGMSFFR 174 (800)
T ss_pred HHHhHHHhhccc-CCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 344555332222 222234567899999999999999998753211 112345555555533221 1122455556654
No 67
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.91 E-value=70 Score=31.54 Aligned_cols=227 Identities=17% Similarity=0.209 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHhhc---CCCCcccccc--cc-chHHHHHHHHHHHHHhC-----CCCCCChHHHHHHHHhcCCCCCccc
Q psy15438 14 FLGTKHAEYIKKYSD---NKEDYEYCMS--EY-LRMSGMYWGITTLSLLD-----QLDDMPQDTIFDFITQCIHPCGGVS 82 (358)
Q Consensus 14 l~~~~h~~yl~~~~~---~~~~~~~~~~--~~-~~~~~~y~~l~~L~lL~-----~~~~~~~~~~i~~i~~~q~~dGGF~ 82 (358)
-.+++.+++..+.+. .+....|+.. +. .++.-+-....+|.+.. .++...|+++++||.+.....-.
T Consensus 73 ~~~~~~~~~~~~gi~~GtdP~spdyw~~~~~~dQ~~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~~-- 150 (361)
T PF10022_consen 73 KLREKLRELYRKGIANGTDPKSPDYWGFIGDYDQRLVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKPP-- 150 (361)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCccccCCcccchhhHhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCCc--
Confidence 345566666555432 3333445432 22 44444444444444433 34566789999999986543221
Q ss_pred ccCCCCCchhHHHHHHHHHHHhc-ccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhH----HHHHHHHHhCCCCh
Q psy15438 83 ASISHDPHILYTLSAVQIACLIN-REHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSF----CAVACLSLLGKLDA 157 (358)
Q Consensus 83 ~~~~~~~~~~~Ty~Al~~L~ll~-~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty----~al~~l~ll~~~~~ 157 (358)
...++......-..|..++ ..+....+..++-+.+....||=|+-.+...-|-...| +.+..+.+.+..++
T Consensus 151 ----~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYns~aih~y~l~~~~~~~~~~~ 226 (361)
T PF10022_consen 151 ----DNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFDYYNSWAIHPYLLLYARLMGDEDP 226 (361)
T ss_pred ----cchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCcchHHHHHHHHHHHHHHHhcccCH
Confidence 1234444433444444444 23334456667777777777775554454445554433 23333444454332
Q ss_pred ----hcHHHHHHHHHhcc---cCCCCCCCCCCCCCcccHHHHH---HHHHHhcccCCh-h-c-------HHHHHHHHHhc
Q psy15438 158 ----INLSKAVEFILSCC---NFDGGFGSRPGSESHAGLTYCC---VGFLSITGHLHE-I-D-------ADKLAWWLAER 218 (358)
Q Consensus 158 ----~~~~~~v~~L~s~Q---~~dGGf~~~pg~esh~~~T~ca---lasL~llg~~~~-~-~-------~~~~~~wL~~~ 218 (358)
.-.+++.+|..... .+||.+- |-+.| ..|=|.+ ++++++++.++. + + ..+.++|-.++
T Consensus 227 ~~~~~~~~Ra~~fa~~~~~~f~~dG~~~--~~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~lr~~~~~ 303 (361)
T PF10022_consen 227 ERAARYRQRAQRFAEDYERMFSPDGAAP--PFGRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVLRWWLEQ 303 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcC--Ccccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 23455666665543 3677653 22222 2232333 444455555221 1 1 23344444444
Q ss_pred -CCC--CC----cccCCCCCCCC----hhHHHHHHHHHHHhC
Q psy15438 219 -QLP--SG----GLNGRPEKLPD----VCYSWWVLASLHMLG 249 (358)
Q Consensus 219 -Q~~--~G----Gf~gr~~k~~D----~cys~w~~a~L~ll~ 249 (358)
... +| ||.+..-..++ +-+.||+..++..|+
T Consensus 304 p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~ 345 (361)
T PF10022_consen 304 PGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLG 345 (361)
T ss_pred CCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhc
Confidence 332 33 66664333333 447899999887665
No 68
>PLN02279 ent-kaur-16-ene synthase
Probab=77.94 E-value=3.8 Score=44.39 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCCC---Cc-ccHHHHHHHHHHh
Q psy15438 139 TRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSE---SH-AGLTYCCVGFLSI 199 (358)
Q Consensus 139 ~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~e---sh-~~~T~calasL~l 199 (358)
+.-|.|+.++-.. +....+....+++||++.|.+||+||..+... -| ...|..||-||.-
T Consensus 55 ~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~ 118 (784)
T PLN02279 55 SYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKK 118 (784)
T ss_pred hhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHH
Confidence 3345554444333 43345678899999999999999998643211 12 2456666666654
No 69
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=71.61 E-value=80 Score=33.64 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=74.5
Q ss_pred cchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccCCCC--hHHHH
Q psy15438 40 YLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELP--VDKIV 116 (358)
Q Consensus 40 ~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~--~~~~~ 116 (358)
.+.+..+|+++.+|..||. .+..+.++++.-|...+..| ..+..+-.|+.+++.|....... .+++-
T Consensus 121 ~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~~s~g~al~~aa~L~~~a~l~~~~~~ie 190 (636)
T PF05817_consen 121 DSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSLLSLGYALHAAAQLSKQADLADIVERIE 190 (636)
T ss_pred CccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHhhccchhhhHHHHHHH
Confidence 3555669999999999984 33457888888888777664 34555556777777775321111 12222
Q ss_pred HHHHhcCCCCCCcccccCCCcccchhHHHHHHHH----HhCCC---ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccH
Q psy15438 117 AYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLS----LLGKL---DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGL 189 (358)
Q Consensus 117 ~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~----ll~~~---~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~ 189 (358)
+=+...-.-||.+-.+.+| +..|-..+.+.. ..|.. +...+-+..+||+++++.+ +..-
T Consensus 191 D~v~qaDEv~~~~LqFegg---Ls~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~v~-----------s~k~ 256 (636)
T PF05817_consen 191 DAVAQADEVDGKYLQFEGG---LSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRSVQ-----------SPKD 256 (636)
T ss_pred HHHHhhhhhcccceeecCC---chhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCCCC-----------CHHH
Confidence 2222222234444433333 223333332222 23442 2334556778999987642 2333
Q ss_pred HHHHHHHHHhcc
Q psy15438 190 TYCCVGFLSITG 201 (358)
Q Consensus 190 T~calasL~llg 201 (358)
.|..+.+|..+.
T Consensus 257 a~~l~~al~~L~ 268 (636)
T PF05817_consen 257 AFNLLEALKSLS 268 (636)
T ss_pred HHHHHHHHHHHh
Confidence 455555665553
No 70
>KOG1366|consensus
Probab=69.89 E-value=12 Score=43.32 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=60.0
Q ss_pred cccchhHHHHHHHHHhCCCChhcHHHHHHHHHh-------cccCCCCCCCCCC--CCCcccHHHHHHHHHHhcccCChh-
Q psy15438 137 VDTRFSFCAVACLSLLGKLDAINLSKAVEFILS-------CCNFDGGFGSRPG--SESHAGLTYCCVGFLSITGHLHEI- 206 (358)
Q Consensus 137 sd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s-------~Q~~dGGf~~~pg--~esh~~~T~calasL~llg~~~~~- 206 (358)
.....++.++-=|...+.+++.-.++++++|.. -+..||.|+..-. ....++-|..++-++....+.-.+
T Consensus 943 i~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id 1022 (1436)
T KOG1366|consen 943 INFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFID 1022 (1436)
T ss_pred ecccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEec
Confidence 344445555555555566766777788888764 3558999875433 334455666677777666543222
Q ss_pred --cHHHHHHHHHhcCCCCCcccCC
Q psy15438 207 --DADKLAWWLAERQLPSGGLNGR 228 (358)
Q Consensus 207 --~~~~~~~wL~~~Q~~~GGf~gr 228 (358)
-+.++..||.++|.++|-|...
T Consensus 1023 ~~~i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1023 PNVITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred HHHHHHHHHHHHHhhccCceEecc
Confidence 3678899999999998888644
No 71
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=65.21 E-value=5.4 Score=37.99 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=44.9
Q ss_pred ccchhHHHHHHHHHhCC-C-C---hhcHHHHHHHHHhcccCCCCCCCC-CCCC-CcccHHH---HHHHHHHhccc-----
Q psy15438 138 DTRFSFCAVACLSLLGK-L-D---AINLSKAVEFILSCCNFDGGFGSR-PGSE-SHAGLTY---CCVGFLSITGH----- 202 (358)
Q Consensus 138 d~~~ty~al~~l~ll~~-~-~---~~~~~~~v~~L~s~Q~~dGGf~~~-pg~e-sh~~~T~---calasL~llg~----- 202 (358)
|-..|+..+.-|.-+-. . + ....+++++||++.|.++|||-.. |... =|...|| ..+..|.+|..
T Consensus 37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~ 116 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK 116 (289)
T ss_dssp GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence 55567766655543311 1 1 245789999999999999999875 3211 1222233 23344444321
Q ss_pred CC--h----------hcHHHHHHHHHhcCCC
Q psy15438 203 LH--E----------IDADKLAWWLAERQLP 221 (358)
Q Consensus 203 ~~--~----------~~~~~~~~wL~~~Q~~ 221 (358)
.+ . ..+++++++|+..|..
T Consensus 117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~ 147 (289)
T PF09492_consen 117 GDFAFVDESLRARARAAVDKGIDCILKTQIR 147 (289)
T ss_dssp TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-E
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11 0 1367899999999973
No 72
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=60.99 E-value=89 Score=32.28 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcccCC-hh-cHHHHHHHHHhcCC-CCCcccCC--------CCCC------CChhHHHHHHHH----HHH
Q psy15438 189 LTYCCVGFLSITGHLH-EI-DADKLAWWLAERQL-PSGGLNGR--------PEKL------PDVCYSWWVLAS----LHM 247 (358)
Q Consensus 189 ~T~calasL~llg~~~-~~-~~~~~~~wL~~~Q~-~~GGf~gr--------~~k~------~D~cys~w~~a~----L~l 247 (358)
|.+.+++-++.+...+ .. ..+++.+.+..++. ..||++.. +... ..+|.++=.+-. +.+
T Consensus 238 y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~ 317 (520)
T PF07944_consen 238 YLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRL 317 (520)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhc
Confidence 4455555555543321 11 24455555665543 47888877 2222 346655432222 222
Q ss_pred hCCCCCCCH--HHHHHHHHHhcCCCCCccccCCccCCCCC
Q psy15438 248 LGRGTWINS--AALRKFILASQVRNTFYFEMGVFSDKIPV 285 (358)
Q Consensus 248 l~~~~~~d~--~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~ 285 (358)
-|...+.|. +.+.+-|+..|++ +.|.|.+-.|-
T Consensus 318 tgd~~yaD~~Er~lyN~~la~~~~-----d~~~~~Y~~pl 352 (520)
T PF07944_consen 318 TGDARYADYYERALYNALLAGQSP-----DGGSFFYFNPL 352 (520)
T ss_pred CCCchHHHHHHHHHhcccccccCC-----CCCeeEEecCC
Confidence 233333342 5566677887888 55567555554
No 73
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=49.79 E-value=1.5e+02 Score=28.36 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=81.5
Q ss_pred HHHHHHHHhcC-C-CCCcccccCC--CCCchhHHHHHHHHHHHhccc------CCCChHHHHHHHHhcCCC-CCCcccc-
Q psy15438 65 DTIFDFITQCI-H-PCGGVSASIS--HDPHILYTLSAVQIACLINRE------HELPVDKIVAYVSKLQQP-DGSFFGD- 132 (358)
Q Consensus 65 ~~~i~~i~~~q-~-~dGGF~~~~~--~~~~~~~Ty~Al~~L~ll~~~------~~~~~~~~~~~l~s~Q~~-dGgf~~~- 132 (358)
.++.+|++..+ + ++|+|..... ....+...|+++-.|...... -....+.+..+...+.++ +|-|...
T Consensus 93 ~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~ 172 (336)
T PF07470_consen 93 IQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGY 172 (336)
T ss_dssp HHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEE
T ss_pred HHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeecc
Confidence 45667666544 3 5899865322 223455666677777665321 112234455566667766 4555321
Q ss_pred -cCCCc------ccchhHHHHHHH----HHhCCCC------hhcHHHHHHHHHhcccCCCCCCCC---CC--CCCcccHH
Q psy15438 133 -MYGEV------DTRFSFCAVACL----SLLGKLD------AINLSKAVEFILSCCNFDGGFGSR---PG--SESHAGLT 190 (358)
Q Consensus 133 -~~~es------d~~~ty~al~~l----~ll~~~~------~~~~~~~v~~L~s~Q~~dGGf~~~---pg--~esh~~~T 190 (358)
..+.. =.|..-+++.++ ..|.... ....++.++.|.+.|..||.|... |. ...++..|
T Consensus 173 ~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSat 252 (336)
T PF07470_consen 173 TYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSAT 252 (336)
T ss_dssp ETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHH
T ss_pred CCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHH
Confidence 11221 133333444433 3332211 123456778888999999988653 33 34445445
Q ss_pred HHHHHHHHh---cccCCh----hcHHHHHHHHHhc-CCCCCc
Q psy15438 191 YCCVGFLSI---TGHLHE----IDADKLAWWLAER-QLPSGG 224 (358)
Q Consensus 191 ~calasL~l---lg~~~~----~~~~~~~~wL~~~-Q~~~GG 224 (358)
.....+|.. .+-++. ...+++.+.|.++ -.++|-
T Consensus 253 A~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 253 AMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 444444421 232322 2356788888888 455554
No 74
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.66 E-value=5.4e+02 Score=27.60 Aligned_cols=42 Identities=24% Similarity=0.591 Sum_probs=28.3
Q ss_pred hHHHHHHHHh-cCCCCCCccccc----CCCcccchhHHHHHHHHHhC
Q psy15438 112 VDKIVAYVSK-LQQPDGSFFGDM----YGEVDTRFSFCAVACLSLLG 153 (358)
Q Consensus 112 ~~~~~~~l~s-~Q~~dGgf~~~~----~~esd~~~ty~al~~l~ll~ 153 (358)
.+.+++||.+ +..++|||..+. .++....+|+..--+-.+||
T Consensus 298 a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg 344 (667)
T COG1331 298 AEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG 344 (667)
T ss_pred HHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc
Confidence 4678888876 566799997643 44555666776666666666
No 75
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=34.15 E-value=4.3e+02 Score=25.40 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=35.6
Q ss_pred hHHHHHHHHhc--CCCCCcccccCCC-------CCchhHHHHHHHHHHHh----cccC-CCChHHHHHHHHhc-CCCC-C
Q psy15438 64 QDTIFDFITQC--IHPCGGVSASISH-------DPHILYTLSAVQIACLI----NREH-ELPVDKIVAYVSKL-QQPD-G 127 (358)
Q Consensus 64 ~~~~i~~i~~~--q~~dGGF~~~~~~-------~~~~~~Ty~Al~~L~ll----~~~~-~~~~~~~~~~l~s~-Q~~d-G 127 (358)
.+.+++|.... ..+.|||...... .-++..+-..|-+++.. ++.. ..-.+++++||.+. ..++ |
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~G 95 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHG 95 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCC
Confidence 35777777763 3457998764321 12232222233333322 2111 11245788888884 4456 9
Q ss_pred Ccccc
Q psy15438 128 SFFGD 132 (358)
Q Consensus 128 gf~~~ 132 (358)
||...
T Consensus 96 g~~~~ 100 (384)
T cd00249 96 GWYFA 100 (384)
T ss_pred CEEEE
Confidence 98653
No 76
>PRK13617 psbV cytochrome c-550; Provisional
Probab=33.82 E-value=57 Score=28.57 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCC-CCCC
Q psy15438 108 HELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDG-GFGS 179 (358)
Q Consensus 108 ~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dG-Gf~~ 179 (358)
.+-+++.+++||+.-+..||.+.......+-.+. .+.-.+..+++.+++.+..||+.....+| .||+
T Consensus 98 ~r~nv~aLv~yikdP~sydg~~s~~e~~P~~~~~-----~imP~~~~LsdeeL~alAayLl~~~k~~~~~wgg 165 (170)
T PRK13617 98 ARDNVDALVDYLKDPTSYDGEYSIADLHPSMRSA-----DLYPAMRDLNDEDLRLMAGYILVAPKVQGTQWGG 165 (170)
T ss_pred CCCCHHHHHHHHhChHhhcchhhccccCcccccc-----ccCcccCCCCHHHHHHHHHHHHhcccccccccCC
Confidence 3457999999999999999986542111000000 00011223578899999999999877666 6765
No 77
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=29.11 E-value=94 Score=26.81 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=36.7
Q ss_pred hcHHHHHHHHHhcccCCCC---CCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccC
Q psy15438 158 INLSKAVEFILSCCNFDGG---FGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q~~dGG---f~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
.+++.+++|+++-+..+|. |+.++-. ...+...+++.++.||+..-...+||++
T Consensus 96 d~I~~Lv~~iknP~s~kG~~~~~~~~mp~----------------~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 96 DTIQSLVAYQRDPMSYDGSEESYGCRPVP----------------EDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHHhhCCcccCcccccccccCCc----------------ccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 4678999999999998873 2221110 0335566788999999876545678875
No 78
>PRK13621 psbV cytochrome c-550; Provisional
Probab=28.81 E-value=1.1e+02 Score=26.90 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=38.4
Q ss_pred hhcHHHHHHHHHhcccCCCC---CCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCC
Q psy15438 157 AINLSKAVEFILSCCNFDGG---FGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGR 228 (358)
Q Consensus 157 ~~~~~~~v~~L~s~Q~~dGG---f~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr 228 (358)
..+++.+++|+++-+.++|. |+.++-.. +.+...+.+.++.||+..-...+||++.
T Consensus 106 rd~I~~LV~~iknPms~kg~~~~~~~~mps~----------------~~LSdeEL~aIAaYLL~qA~~~~~Wg~~ 164 (170)
T PRK13621 106 RDNIAALVAYQRDPMSYDGSEESYGCRQVPE----------------DWMTDEELQNLAAFILRAAQKAPGWGTE 164 (170)
T ss_pred hHHHHHHHHHhhCCCCCCcccccccccCCcc----------------CCCCHHHHHHHHHHHHhhhhhccCCCCc
Confidence 45678999999999998873 33332110 3456678899999998764445777653
No 79
>PRK13621 psbV cytochrome c-550; Provisional
Probab=28.34 E-value=98 Score=27.10 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=37.6
Q ss_pred ChHHHHHHHHhcCCCCCC---cccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCCC
Q psy15438 111 PVDKIVAYVSKLQQPDGS---FFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSR 180 (358)
Q Consensus 111 ~~~~~~~~l~s~Q~~dGg---f~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~ 180 (358)
+++.+++|++.-+..||. |...+. . ...++..+++.++.||+..-...+||++.
T Consensus 108 ~I~~LV~~iknPms~kg~~~~~~~~mp------s----------~~~LSdeEL~aIAaYLL~qA~~~~~Wg~~ 164 (170)
T PRK13621 108 NIAALVAYQRDPMSYDGSEESYGCRQV------P----------EDWMTDEELQNLAAFILRAAQKAPGWGTE 164 (170)
T ss_pred HHHHHHHHhhCCCCCCcccccccccCC------c----------cCCCCHHHHHHHHHHHHhhhhhccCCCCc
Confidence 347788899888877773 222211 0 04467889999999999876667888763
No 80
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=25.82 E-value=5.3e+02 Score=27.60 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=48.2
Q ss_pred CchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccc--cCCCc-----ccchhHHHHHHHHHhCCCC----h
Q psy15438 89 PHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGD--MYGEV-----DTRFSFCAVACLSLLGKLD----A 157 (358)
Q Consensus 89 ~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~--~~~es-----d~~~ty~al~~l~ll~~~~----~ 157 (358)
-.++..+..+.+|..++... ..++.++||.+.|.++|.|-.. +.|+. .+-.+-..+.++..+.+.. .
T Consensus 295 vW~RD~a~~a~AL~~~G~~~--~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~ 372 (648)
T TIGR01535 295 VWPRDLYQVANAFLAAGDVD--SALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYD 372 (648)
T ss_pred EehhhHHHHHHHHHHCCCHH--HHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHH
Confidence 45677777777777776432 4678999999999999987431 22322 1111222222223332211 2
Q ss_pred hcHHHHHHHHHhcc
Q psy15438 158 INLSKAVEFILSCC 171 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q 171 (358)
..++++++||.+.-
T Consensus 373 ~~vk~aadfl~~~~ 386 (648)
T TIGR01535 373 KMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHHHcC
Confidence 45889999999863
No 81
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=25.82 E-value=2.1e+02 Score=27.44 Aligned_cols=65 Identities=28% Similarity=0.326 Sum_probs=39.9
Q ss_pred hHHHHHHHHhcCCCCCCcccc---cC--CCcccchhHHHHHHH-H-H-hCCCCh----hcHHHHHHHHHhc-ccCCCC
Q psy15438 112 VDKIVAYVSKLQQPDGSFFGD---MY--GEVDTRFSFCAVACL-S-L-LGKLDA----INLSKAVEFILSC-CNFDGG 176 (358)
Q Consensus 112 ~~~~~~~l~s~Q~~dGgf~~~---~~--~esd~~~ty~al~~l-~-l-l~~~~~----~~~~~~v~~L~s~-Q~~dGG 176 (358)
.+++++.|...|.+||.|... |. ...|+..|-.++.+| . + .+.++. +..+++.+.|.+. -++||-
T Consensus 217 ~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 217 AKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 356778899999999999764 22 334555444433333 2 1 233422 3567888999998 677776
No 82
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=25.49 E-value=1.1e+02 Score=26.30 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCC
Q psy15438 111 PVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGS 179 (358)
Q Consensus 111 ~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~ 179 (358)
.++.+++|++.-+..+|.-.... .++- . ...+++.+++.++.||+..-...+||++
T Consensus 97 ~I~~Lv~~iknP~s~kG~~~~~~---~~mp-~---------~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 97 TIQSLVAYQRDPMSYDGSEESYG---CRPV-P---------EDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred HHHHHHHHhhCCcccCccccccc---ccCC-c---------ccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 35778899988888777421110 0000 0 0346788999999999987767788875
No 83
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.08 E-value=6.7e+02 Score=24.69 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=82.9
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCCCCCcccccCCCCCc---
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIHPCGGVSASISHDPH--- 90 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~--- 90 (358)
.+++.+++|++......+ +.|-++..-..-..|.-+|. .+....+..++-|.+....||=|+-++...-|
T Consensus 133 ~k~~l~~wL~~~~~~~~~------~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYn 206 (361)
T PF10022_consen 133 EKENLVDWLKQIRGIKPP------DNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFDYYN 206 (361)
T ss_pred HHHHHHHHHHhcCcCCCc------cchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCcchH
Confidence 567778888865432211 12322222222333333332 22233466777777777777766555532211
Q ss_pred -hhHHHHHHHHHHHhcccCC----CChHHHHHHHHhc---CCCCCCcccccCCCcc-cchh-HHHHHHHHHhCCC-----
Q psy15438 91 -ILYTLSAVQIACLINREHE----LPVDKIVAYVSKL---QQPDGSFFGDMYGEVD-TRFS-FCAVACLSLLGKL----- 155 (358)
Q Consensus 91 -~~~Ty~Al~~L~ll~~~~~----~~~~~~~~~l~s~---Q~~dGgf~~~~~~esd-~~~t-y~al~~l~ll~~~----- 155 (358)
.+.=++.+..+.+..+.+. .-++++.+|.... -.+||.+. +.|-|- -|+. ...++++.+.+.+
T Consensus 207 s~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~--~~GRSltYRfA~~a~~~~~a~~~~lp~~~~ 284 (361)
T PF10022_consen 207 SWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP--PFGRSLTYRFAAFAFLAAAALAGVLPEPLI 284 (361)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC--CccccHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 1122223333333333221 1234444444433 35888776 334332 2222 2233444555552
Q ss_pred Chh----cHHHHHHHHHhc-cc--CCC----CCCCC-C---CCCCcccHHHHHHHHHHhccc
Q psy15438 156 DAI----NLSKAVEFILSC-CN--FDG----GFGSR-P---GSESHAGLTYCCVGFLSITGH 202 (358)
Q Consensus 156 ~~~----~~~~~v~~L~s~-Q~--~dG----Gf~~~-p---g~esh~~~T~calasL~llg~ 202 (358)
++- ...+.++|..+. .. .|| ||.+. + ..-+-.++-|||..++..|+-
T Consensus 285 ~~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~L 346 (361)
T PF10022_consen 285 SPGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGL 346 (361)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcC
Confidence 111 233445555554 33 344 45442 1 122556778999888866654
No 84
>PF08157 NUC129: NUC129 domain; InterPro: IPR012579 This C-terminal domain is found in a novel family of hypothetical nucleolar proteins [].; GO: 0005634 nucleus
Probab=24.73 E-value=1.5e+02 Score=21.25 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=36.5
Q ss_pred cccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHh
Q psy15438 4 VDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQ 73 (358)
Q Consensus 4 ~~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~ 73 (358)
|.+|+.....+..+...+||.+++-- |+ .+|.. ++=+--|..-....+..+++|+.+
T Consensus 4 ~rlKd~~l~~~~QqaAk~Fi~~~LYG--pg------snRTT-----~N~flSL~NKr~~vKkAAvQFv~k 60 (63)
T PF08157_consen 4 VRLKDQSLRDSQQQAAKDFIQSRLYG--PG------SNRTT-----VNEFLSLANKRLPVKKAAVQFVNK 60 (63)
T ss_pred EEeccchhhhHHHHHHHHHHHHhccC--CC------CCccc-----HHHHhhhhhcccccHHHHHHHHhh
Confidence 67888888889999999999998752 22 23321 111111222234567889999865
No 85
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=23.71 E-value=2.4e+02 Score=29.15 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=31.8
Q ss_pred CCCCcc----cccCCCcccchhHHHHHHHHH-hCCCC-hhcHHHHHHHHHhcccCCCCCCC
Q psy15438 125 PDGSFF----GDMYGEVDTRFSFCAVACLSL-LGKLD-AINLSKAVEFILSCCNFDGGFGS 179 (358)
Q Consensus 125 ~dGgf~----~~~~~esd~~~ty~al~~l~l-l~~~~-~~~~~~~v~~L~s~Q~~dGGf~~ 179 (358)
+-|||. +.....+++..-..|++-+.. .+... ...+++.|++|.+||.+||=++.
T Consensus 44 ~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~ 104 (520)
T PF07944_consen 44 AYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGT 104 (520)
T ss_pred cCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecc
Confidence 456666 333445666654445443333 23211 13467789999999999985544
No 86
>PRK13619 psbV cytochrome c-550; Provisional
Probab=21.75 E-value=1.5e+02 Score=25.73 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHh---CCCChhcHHHHHHHHHhcccCCCCCCC
Q psy15438 108 HELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLL---GKLDAINLSKAVEFILSCCNFDGGFGS 179 (358)
Q Consensus 108 ~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll---~~~~~~~~~~~v~~L~s~Q~~dGGf~~ 179 (358)
++-+++.+++|++.=-..||.........+ +....+. -.++..+......||+..-...|+||+
T Consensus 90 ~RdnV~aLVdymk~PtsyDG~~~~a~~hps--------i~~~di~P~mr~LtdedL~~iAg~IL~~pk~~~~WGG 156 (160)
T PRK13619 90 PRDNVLALVDYLKHPTSYDGEDDYSELHPN--------VSRPDIFPELRNFTEDDLYDVAGYMLVAPKLDERWGG 156 (160)
T ss_pred CcccHHHHHHHHhCCcccccchhhhhhccc--------ccccccccccCCCCHHHHHHHHHHHHhccccccccCC
Confidence 456789999999999889997653211100 0001111 124677888999999988777788885
No 87
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=21.29 E-value=2e+02 Score=34.25 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=60.7
Q ss_pred ccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCC---CChHHHHHHHHhcCCCCCcc
Q psy15438 5 DLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD---MPQDTIFDFITQCIHPCGGV 81 (358)
Q Consensus 5 ~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~---~~~~~~i~~i~~~q~~dGGF 81 (358)
.+.-+..+.++.++-+++|.+. |+++..+-.++.--.-+.=......+..+. ...+.++.-|.++|..+|+|
T Consensus 1144 ~l~ls~~~~~~~~~~~~~L~~Y-----Pygc~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F 1218 (1621)
T COG2373 1144 QLQLSGTPAADIAALLDVLDDY-----PYGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAF 1218 (1621)
T ss_pred EEEeccCccccHHHHHHHHHhC-----CccchhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCce
Confidence 3333444567777766666643 666544434442111111111111111111 12356778888899999999
Q ss_pred cccCC-CCCchhHHHHHHHHHHHhccc----CCCChHHHHH-HHHhcCCC
Q psy15438 82 SASIS-HDPHILYTLSAVQIACLINRE----HELPVDKIVA-YVSKLQQP 125 (358)
Q Consensus 82 ~~~~~-~~~~~~~Ty~Al~~L~ll~~~----~~~~~~~~~~-~l~s~Q~~ 125 (358)
+...+ .+++..-|-.++..|.--.+. +....+++.+ +++.+|++
T Consensus 1219 ~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1219 GLWGGNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred eecCCCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHHhCc
Confidence 98876 667887776666655433321 2222344433 45555654
Done!