Query psy15438
Match_columns 358
No_of_seqs 239 out of 1628
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:04:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 3.7E-81 1.3E-85 601.6 32.8 317 1-356 5-321 (331)
2 3dra_B Geranylgeranyltransfera 100.0 5E-78 1.7E-82 586.5 21.5 307 12-356 2-382 (390)
3 1n4q_B Geranyltransferase type 100.0 2.9E-77 1E-81 581.9 26.5 304 11-356 17-352 (377)
4 3q7a_B Farnesyltransferase bet 100.0 1.1E-74 3.7E-79 575.5 21.9 287 12-336 59-423 (520)
5 2h6f_B Protein farnesyltransfe 100.0 1.4E-71 4.7E-76 551.5 23.4 307 11-355 70-408 (437)
6 3dss_B Geranylgeranyl transfer 100.0 3.2E-46 1.1E-50 358.8 26.6 239 13-251 65-304 (331)
7 2h6f_B Protein farnesyltransfe 100.0 2E-44 6.9E-49 357.0 18.2 237 61-336 72-313 (437)
8 1n4q_B Geranyltransferase type 100.0 2.5E-41 8.5E-46 329.0 25.1 236 14-251 67-335 (377)
9 3dra_B Geranylgeranyltransfera 100.0 1.4E-41 4.6E-46 330.6 22.6 237 13-250 52-362 (390)
10 3q7a_B Farnesyltransferase bet 100.0 2.3E-40 7.8E-45 329.3 17.1 256 13-269 108-441 (520)
11 2sqc_A Squalene-hopene cyclase 99.9 1.4E-23 4.7E-28 217.8 25.3 258 15-279 282-591 (631)
12 1w6k_A Lanosterol synthase; cy 99.9 7.9E-24 2.7E-28 222.4 21.4 257 15-279 357-687 (732)
13 2sqc_A Squalene-hopene cyclase 99.9 1E-21 3.6E-26 203.7 21.3 222 15-237 332-606 (631)
14 1w6k_A Lanosterol synthase; cy 99.9 6.9E-21 2.4E-25 200.1 20.7 222 15-237 410-701 (732)
15 2wy7_A Complement C3D fragment 99.6 1.7E-13 5.6E-18 130.2 23.0 224 32-279 14-273 (310)
16 1qqf_A Protein (complement C3D 99.6 1.9E-13 6.6E-18 127.6 21.1 216 41-279 7-257 (277)
17 1hzf_A Complement factor C4A; 99.4 5E-11 1.7E-15 115.7 21.4 228 32-279 51-343 (367)
18 1qqf_A Protein (complement C3D 99.3 3.3E-11 1.1E-15 112.4 18.0 200 21-245 45-270 (277)
19 2wy7_A Complement C3D fragment 99.3 7.8E-11 2.7E-15 111.7 18.4 192 18-227 58-275 (310)
20 2pn5_A TEP1R, thioester-contai 99.2 1.1E-09 3.8E-14 122.3 20.4 224 32-279 835-1085(1325)
21 2hr0_B Complement C3 alpha' ch 99.1 2.4E-09 8.1E-14 115.4 21.2 225 32-279 259-518 (915)
22 4acq_A Alpha-2-macroglobulin; 99.0 9.3E-09 3.2E-13 115.4 19.8 234 32-279 946-1225(1451)
23 1hzf_A Complement factor C4A; 99.0 2.2E-08 7.4E-13 97.1 19.7 200 15-227 92-345 (367)
24 2b39_A C3; thioester, immune d 98.7 7E-07 2.4E-11 101.8 22.0 225 32-279 1006-1265(1661)
25 1r76_A Pectate lyase; A-helica 98.7 4.3E-08 1.5E-12 95.0 9.8 162 64-226 83-334 (408)
26 4fxk_B Complement C4-A alpha c 98.6 8.5E-06 2.9E-10 86.1 24.8 100 32-131 328-440 (767)
27 2hr0_B Complement C3 alpha' ch 98.6 1.5E-06 5E-11 93.7 18.5 188 23-227 308-520 (915)
28 1gxm_A Pectate lyase; mechanis 98.5 8.2E-08 2.8E-12 90.6 5.3 155 66-221 35-252 (332)
29 2pn5_A TEP1R, thioester-contai 98.5 2.9E-06 9.8E-11 94.8 17.9 207 16-247 867-1100(1325)
30 4acq_A Alpha-2-macroglobulin; 98.4 3.3E-06 1.1E-10 94.9 17.5 217 21-247 990-1243(1451)
31 3cu7_A Complement C5; Mg domai 98.4 3.7E-06 1.3E-10 96.0 16.3 228 32-279 1004-1284(1676)
32 2bb6_A TCII, TC II, transcobal 98.2 6.2E-06 2.1E-10 80.3 11.5 134 44-198 137-282 (414)
33 1r76_A Pectate lyase; A-helica 98.2 9E-06 3.1E-10 78.8 12.4 160 112-279 83-333 (408)
34 2bb6_A TCII, TC II, transcobal 98.0 1.7E-05 5.9E-10 77.2 10.2 118 97-226 140-269 (414)
35 4fxk_B Complement C4-A alpha c 98.0 0.00075 2.6E-08 71.2 22.1 202 15-227 362-622 (767)
36 3prx_B Cobra venom factor; imm 97.9 1.3E-06 4.4E-11 98.9 0.0 230 18-279 981-1247(1642)
37 2b39_A C3; thioester, immune d 97.9 0.00037 1.3E-08 79.5 19.3 195 16-227 1041-1267(1661)
38 1gxm_A Pectate lyase; mechanis 97.8 1.5E-05 5.3E-10 75.1 5.3 155 114-269 35-252 (332)
39 3cu7_A Complement C5; Mg domai 97.7 0.00087 3E-08 76.5 19.0 210 15-244 1041-1299(1676)
40 3sdr_A Alpha-bisabolene syntha 97.6 0.0011 3.7E-08 70.1 15.3 237 40-337 80-364 (817)
41 3p5p_A Taxadiene synthase; cla 97.5 0.0011 3.6E-08 69.7 14.2 261 15-337 9-312 (764)
42 2pmv_A Gastric intrinsic facto 97.5 0.0002 6.8E-09 69.3 7.4 113 64-198 132-258 (399)
43 3s9v_A Abietadiene synthase, c 97.2 0.0067 2.3E-07 63.9 16.4 257 15-337 32-336 (785)
44 2pmv_A Gastric intrinsic facto 97.2 0.0011 3.7E-08 64.2 9.5 115 96-226 117-245 (399)
45 3prx_B Cobra venom factor; imm 97.1 6.8E-05 2.3E-09 85.0 0.0 191 16-228 1025-1250(1642)
46 3pya_A ENT-copalyl diphosphate 96.9 0.026 8.7E-07 58.8 16.3 255 15-337 10-311 (727)
47 3sdr_A Alpha-bisabolene syntha 89.4 0.41 1.4E-05 50.6 5.8 62 156-218 99-162 (817)
48 3s9v_A Abietadiene synthase, c 88.1 0.54 1.8E-05 49.5 5.7 78 89-171 54-136 (785)
49 3p5p_A Taxadiene synthase; cla 88.0 0.68 2.3E-05 48.6 6.4 61 157-218 52-114 (764)
50 3pya_A ENT-copalyl diphosphate 81.5 1.8 6.3E-05 45.0 6.0 60 158-218 50-111 (727)
51 3k11_A Putative glycosyl hydro 71.9 31 0.001 33.6 11.4 162 65-226 171-372 (445)
52 3pmm_A Putative cytoplasmic pr 58.2 69 0.0024 30.2 10.8 162 66-227 137-341 (382)
53 3k11_A Putative glycosyl hydro 38.4 1.6E+02 0.0056 28.4 10.0 67 112-178 296-372 (445)
54 1wgn_A UBAP1, ubiquitin associ 35.0 38 0.0013 23.5 3.4 28 191-222 34-61 (63)
55 3pmm_A Putative cytoplasmic pr 34.8 1E+02 0.0036 29.0 7.8 69 112-180 265-342 (382)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=3.7e-81 Score=601.64 Aligned_cols=317 Identities=63% Similarity=1.171 Sum_probs=305.5
Q ss_pred CcccccCCCCccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCc
Q psy15438 1 MRDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGG 80 (358)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGG 80 (358)
.+||+++++.+.+|.++||++||+++....+|.+|+..|++|+|.+||+|++|++|++++..+|+++++||++||+++||
T Consensus 5 ~~~~~~~~~~~~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGG 84 (331)
T 3dss_B 5 QKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGG 84 (331)
T ss_dssp CCCCCCCTTSCCSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSC
T ss_pred ccceeCCCCCchhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCC
Confidence 48999999999999999999999998766778999999999999999999999999988888999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcH
Q psy15438 81 VSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINL 160 (358)
Q Consensus 81 F~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~ 160 (358)
|++.+++++|+.+||+|+++|.+++.++.+|++++++||+++|++||||.+.+++|+|+++||||+++|.++|.++.+++
T Consensus 85 F~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~ 164 (331)
T 3dss_B 85 VSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINV 164 (331)
T ss_dssp BBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHH
Q psy15438 161 SKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWW 240 (358)
Q Consensus 161 ~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w 240 (358)
+++++||++||++||||+.+|+.|+|+++||||+++|.++++++.++++++++||.++|.++|||+|||+|++|+|||||
T Consensus 165 ~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w 244 (331)
T 3dss_B 165 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWW 244 (331)
T ss_dssp HHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHH
T ss_pred HHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCC
Q psy15438 241 VLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPD 320 (358)
Q Consensus 241 ~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D 320 (358)
++++|+++|+.+++|.+++++||++||++ +.||| +++|++.||
T Consensus 245 ~l~~L~llg~~~~~~~~~~~~fil~cQ~~-----~~GGf--------------------------------~~~pg~~~d 287 (331)
T 3dss_B 245 VLASLKIIGRLHWIDREKLRSFILACQDE-----ETGGF--------------------------------ADRPGDMVD 287 (331)
T ss_dssp HHHHHHHTTCGGGSCHHHHHHHHHHTBCT-----TTCCB--------------------------------CSSTTSCCB
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHhcCC-----CCCCc--------------------------------CCCCCCCCC
Confidence 99999999998899999999999999998 45999 899999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCcCccccCCccccc
Q psy15438 321 PFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFH 356 (358)
Q Consensus 321 ~~hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~~ 356 (358)
++||||+|+||+++++ ++|.+|||+||||.++++
T Consensus 288 ~~hT~~~l~~Ls~~g~--~~l~~~~p~~~~~~~~~~ 321 (331)
T 3dss_B 288 PFHTLFGIAGLSLLGE--EQIKPVSPVFCMPEEVLQ 321 (331)
T ss_dssp HHHHHHHHHHHHHTTC--TTSCCBCTTTSSBHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CCCCCCCccccCCHHHHH
Confidence 9999999999999998 899999999999988764
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=5e-78 Score=586.52 Aligned_cols=307 Identities=24% Similarity=0.411 Sum_probs=278.3
Q ss_pred cccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHhcCCC----CCcccccC
Q psy15438 12 KEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL--DDMPQDTIFDFITQCIHP----CGGVSASI 85 (358)
Q Consensus 12 ~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~--~~~~~~~~i~~i~~~q~~----dGGF~~~~ 85 (358)
.+|+++||++|+++++.. +|..|.+.|++|+|++||+|++|++|+.+ ...+++++++||++||.+ .|||++++
T Consensus 2 ~~l~~~kHiky~~~~L~~-Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~ 80 (390)
T 3dra_B 2 NQLLINKHEKFFNRCLIG-LPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTH 80 (390)
T ss_dssp CCCCHHHHHHHHHHHHHC-CCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSG
T ss_pred ccccHHHHHHHHHHHHHh-CCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCc
Confidence 368999999999999874 68889999999999999999999999986 345688999999999765 39999985
Q ss_pred -----C---CCCchhHHHHHHHHHHHhcc--cCCCChHHHHHHHHhcCC---C-CCCccccc-----------CCCcccc
Q psy15438 86 -----S---HDPHILYTLSAVQIACLINR--EHELPVDKIVAYVSKLQQ---P-DGSFFGDM-----------YGEVDTR 140 (358)
Q Consensus 86 -----~---~~~~~~~Ty~Al~~L~ll~~--~~~~~~~~~~~~l~s~Q~---~-dGgf~~~~-----------~~esd~~ 140 (358)
+ +.+|+.+||+||++|++|++ ++++|++++++||.++|+ + ||||...+ ++|.|+|
T Consensus 81 ~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R 160 (390)
T 3dra_B 81 YFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLR 160 (390)
T ss_dssp GGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHH
T ss_pred cCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHH
Confidence 5 57999999999999999976 478999999999999999 6 99999553 7899999
Q ss_pred hhHHHHHHHHHhCCCC-------------hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhc
Q psy15438 141 FSFCAVACLSLLGKLD-------------AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEID 207 (358)
Q Consensus 141 ~ty~al~~l~ll~~~~-------------~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~ 207 (358)
++|||++++++|+..+ .++++++++||++||++||||+..|+.|||+++|||||++|++|+++ ..+
T Consensus 161 ~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d 239 (390)
T 3dra_B 161 VCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEK 239 (390)
T ss_dssp HHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGG
T ss_pred HHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-ccc
Confidence 9999999999999876 58899999999999999999999999999999999999999999997 478
Q ss_pred HHHHHHHHHhcCC----------------------------CCCcccCCCCCCCChhHHHHHHHHHHHhCC--CCCCCHH
Q psy15438 208 ADKLAWWLAERQL----------------------------PSGGLNGRPEKLPDVCYSWWVLASLHMLGR--GTWINSA 257 (358)
Q Consensus 208 ~~~~~~wL~~~Q~----------------------------~~GGf~gr~~k~~D~cys~w~~a~L~ll~~--~~~~d~~ 257 (358)
.+++++||++||. ++|||+|||||.+|+|||||++++|.+|++ .+++|.+
T Consensus 240 ~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~ 319 (390)
T 3dra_B 240 LKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLN 319 (390)
T ss_dssp CHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGSCHH
T ss_pred HHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhccccccccCHH
Confidence 9999999999998 479999999999999999999999999995 5789999
Q ss_pred HHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCC
Q psy15438 258 ALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 258 ~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
++++||+.||+.. +.||| +|+|+++||+|||||+|+|||+++++
T Consensus 320 ~l~~yiL~c~Q~~----~~GGf--------------------------------~d~Pg~~pD~yHT~~gLagLsl~~~~ 363 (390)
T 3dra_B 320 KAEDYLLNKTQNQ----LFGGF--------------------------------GRDPDSTPDPMHSYLALASLSLWNHE 363 (390)
T ss_dssp HHHHHHHHTTBCT----TTCSB--------------------------------CSSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC----CCCCc--------------------------------CCCCCCCCchHHHHHHHHHHHHcCCc
Confidence 9999999985540 37999 99999999999999999999999864
Q ss_pred CCCCCCcCccccCCccccc
Q psy15438 338 TPDVLPVDPTYCMPVRTFH 356 (358)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~ 356 (358)
.++|.+|||+||||.++++
T Consensus 364 ~~~l~~vdp~~~ip~~~~~ 382 (390)
T 3dra_B 364 KFALQEINPILTITKESYQ 382 (390)
T ss_dssp HHTCCCEETTTTEEHHHHH
T ss_pred cCCCceeCchhcCCHHHHH
Confidence 4689999999999998764
No 3
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=2.9e-77 Score=581.95 Aligned_cols=304 Identities=28% Similarity=0.507 Sum_probs=283.8
Q ss_pred ccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCC---------CCCcc
Q psy15438 11 PKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIH---------PCGGV 81 (358)
Q Consensus 11 ~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~---------~dGGF 81 (358)
+..|.++||++||++++.. +|..|...|++|+|++||+|++|++|+.++.++++++++||+++|+ ++|||
T Consensus 17 ~~~l~~~~H~~y~~~~l~~-lp~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF 95 (377)
T 1n4q_B 17 RLDFLRDRHVRFFQRCLQV-LPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGF 95 (377)
T ss_dssp -CCCCHHHHHHHHHHHHHE-ECGGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEE
T ss_pred ccccCHHHHHHHHHHHhhc-CCccccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCcc
Confidence 3579999999999999864 4778999999999999999999999998777789999999999998 68999
Q ss_pred cccCCC-----------------CCchhHHHHHHHHHHHhc-ccCCCChHHHHHHHHhcCCCCCCcccc-cCCCcccchh
Q psy15438 82 SASISH-----------------DPHILYTLSAVQIACLIN-REHELPVDKIVAYVSKLQQPDGSFFGD-MYGEVDTRFS 142 (358)
Q Consensus 82 ~~~~~~-----------------~~~~~~Ty~Al~~L~ll~-~~~~~~~~~~~~~l~s~Q~~dGgf~~~-~~~esd~~~t 142 (358)
++.+.. .+|+.+||+||++|.+++ .+++++++++++||+++|++||||.+. .+++.|+|+|
T Consensus 96 ~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~Dirft 175 (377)
T 1n4q_B 96 RGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFV 175 (377)
T ss_dssp CSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHH
T ss_pred CCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHH
Confidence 998754 489999999999999997 578899999999999999999999987 6899999999
Q ss_pred HHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChh----cHHHHHHHHHhc
Q psy15438 143 FCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI----DADKLAWWLAER 218 (358)
Q Consensus 143 y~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~----~~~~~~~wL~~~ 218 (358)
|||++++.++|..+.++++++++||++||++||||+..|+.|+|+++||||+++|.+++..+.. +++++++||.+|
T Consensus 176 Y~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~r 255 (377)
T 1n4q_B 176 YCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR 255 (377)
T ss_dssp HHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhc
Confidence 9999999999988888999999999999999999999999999999999999999999986544 789999999999
Q ss_pred CCCCCcccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccc
Q psy15438 219 QLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVR 298 (358)
Q Consensus 219 Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~ 298 (358)
| +|||+|||||.+|+|||||++++|.+|++.+++|.+++++||++||++ +.|||
T Consensus 256 Q--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~-----~~GGf------------------- 309 (377)
T 1n4q_B 256 Q--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDR-----LVGGF------------------- 309 (377)
T ss_dssp B--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCT-----TTCSB-------------------
T ss_pred C--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCC-----CCCCc-------------------
Confidence 9 899999999999999999999999999999999999999999999998 68999
Q ss_pred cccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCCCCCCCCcCccccCCccccc
Q psy15438 299 NRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTFH 356 (358)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~~~~~~~~~~~~~~~~~~~~ 356 (358)
+|+|++.||+|||||+|+|||++++ ++|.+|||+||||.++++
T Consensus 310 -------------~~~p~~~~D~~HT~~~LagLsl~~~--~~l~~i~p~~~i~~~~~~ 352 (377)
T 1n4q_B 310 -------------AKWPDSHPDALHAYFGICGLSLMEE--SGICKVHPALNVSTRTSE 352 (377)
T ss_dssp -------------CSSTTSCCBHHHHHHHHHHHHHTTC--TTCCCEETTTTEEHHHHH
T ss_pred -------------CCCCCCCCCHHHHHHHHHHHHhcCC--CCCCCCCCcccCCHHHHH
Confidence 8999999999999999999999998 899999999999987653
No 4
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.1e-74 Score=575.49 Aligned_cols=287 Identities=26% Similarity=0.461 Sum_probs=265.1
Q ss_pred cccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCC-CCCCChHHHHHHHHhcCCCCCcccccC--CCC
Q psy15438 12 KEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ-LDDMPQDTIFDFITQCIHPCGGVSASI--SHD 88 (358)
Q Consensus 12 ~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~-~~~~~~~~~i~~i~~~q~~dGGF~~~~--~~~ 88 (358)
.+|++++|++||++++. .+|..|.+.|.+|+|++||+|++|.+|+. .+..+++++++||++||+++|||++.+ ++.
T Consensus 59 ~~L~~~~Hi~yl~~~L~-~LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~ 137 (520)
T 3q7a_B 59 SGLRKQEHTQFLASSFF-QLPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI 137 (520)
T ss_dssp CCCCHHHHHHHHHHHHS-CBCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSC
T ss_pred cccCHHHHHHHHHHHhh-hCChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence 37999999999999984 56889999999999999999999999994 555678999999999999999999999 899
Q ss_pred CchhHHHHHHHHHHHhcc------cCCCC--hHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcH
Q psy15438 89 PHILYTLSAVQIACLINR------EHELP--VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINL 160 (358)
Q Consensus 89 ~~~~~Ty~Al~~L~ll~~------~~~~~--~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~ 160 (358)
+|+.+||+||++|.+++. ++++| ++++++||+++|++||||.+..+|+.|+|+||||++++.+||.++.+++
T Consensus 138 ~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v 217 (520)
T 3q7a_B 138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELL 217 (520)
T ss_dssp CCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999975 34577 9999999999999999999988999999999999999999999888999
Q ss_pred HHHHHHHHhcccCCCCCCC-----------------------CCCCCCcccHHHHHHHHHHhcccCC------hhcHHHH
Q psy15438 161 SKAVEFILSCCNFDGGFGS-----------------------RPGSESHAGLTYCCVGFLSITGHLH------EIDADKL 211 (358)
Q Consensus 161 ~~~v~~L~s~Q~~dGGf~~-----------------------~pg~esh~~~T~calasL~llg~~~------~~~~~~~ 211 (358)
+++++||++||++||||+. .|+.|+|++||||||++|++|++++ .+|.+++
T Consensus 218 ~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l 297 (520)
T 3q7a_B 218 HNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAA 297 (520)
T ss_dssp TTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHH
T ss_pred HHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHH
Confidence 9999999999999999999 6899999999999999999999963 5789999
Q ss_pred HHHHHhcCC---CCCcccCCCCCCCChhHHHHHHHHHHHhCCC--------------------------------CCCCH
Q psy15438 212 AWWLAERQL---PSGGLNGRPEKLPDVCYSWWVLASLHMLGRG--------------------------------TWINS 256 (358)
Q Consensus 212 ~~wL~~~Q~---~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~--------------------------------~~~d~ 256 (358)
++||.+||. ++|||+|||||++|+|||||++++|.+|++. .++|.
T Consensus 298 ~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~ 377 (520)
T 3q7a_B 298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNR 377 (520)
T ss_dssp HHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHHC---------------------CCCSSCH
T ss_pred HHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccCH
Confidence 999999997 4699999999999999999999999999753 35899
Q ss_pred HHHHHHHH-HhcCCCCCccc--cCCccCCCCCCcccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHh
Q psy15438 257 AALRKFIL-ASQVRNTFYFE--MGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTM 333 (358)
Q Consensus 257 ~~l~~~ll-~~Q~~~~~~~~--~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~ 333 (358)
++|++||+ .||++ . .||| +|+|++.||+|||||+|+|||+
T Consensus 378 ~~L~~yIL~~~Q~~-----~~~~GGf--------------------------------~DkPg~~pD~yHT~y~LaGLSl 420 (520)
T 3q7a_B 378 VALQEFTLVAAQQD-----PGSTGGL--------------------------------RDKPGKRPDQYHTCNNLSGLSI 420 (520)
T ss_dssp HHHHHHHHHTTBCC-----TTSSCCB--------------------------------CSSTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-----CCCCCCC--------------------------------CCCCCCCcchhHHHHHHHHHHH
Confidence 99999999 57887 3 3999 9999999999999999999999
Q ss_pred cCC
Q psy15438 334 LDP 336 (358)
Q Consensus 334 ~~~ 336 (358)
+++
T Consensus 421 ~qh 423 (520)
T 3q7a_B 421 AQH 423 (520)
T ss_dssp HHS
T ss_pred hCC
Confidence 853
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=1.4e-71 Score=551.49 Aligned_cols=307 Identities=29% Similarity=0.516 Sum_probs=280.3
Q ss_pred ccccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC-CCCChHHHHHHHHhcCCCCCcccccCCCCC
Q psy15438 11 PKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL-DDMPQDTIFDFITQCIHPCGGVSASISHDP 89 (358)
Q Consensus 11 ~~~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~-~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~ 89 (358)
...|.+++|++||+++++. .+.+|...|.++.|++||+|++|++|+.. +...++++++||+++|++||||++.+.+.+
T Consensus 70 ~~~l~~~~hi~~l~~~lq~-~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~ 148 (437)
T 2h6f_B 70 RLVLQREKHFHYLKRGLRQ-LTDAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYP 148 (437)
T ss_dssp CCCCCHHHHHHHHHHHTTE-ECGGGGGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCB
T ss_pred cccccHHHHHHHHHHcCCC-CCCCcccccCCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCc
Confidence 3589999999999999432 37788888999999999999999999963 445678999999999999999999998899
Q ss_pred chhHHHHHHHHHHHhcc---cCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHH
Q psy15438 90 HILYTLSAVQIACLINR---EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEF 166 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~---~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~ 166 (358)
|+..||+||++|.+++. .+.++++++++||+++|++||||.+.+++++|+++||||++++.++|..+...++++++|
T Consensus 149 ~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~ 228 (437)
T 2h6f_B 149 HLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEW 228 (437)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHH
T ss_pred chhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999975 477899999999999999999999999999999999999999999998877889999999
Q ss_pred HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC-CCCcccCCCCCCCChhHHHHHHHHH
Q psy15438 167 ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL-PSGGLNGRPEKLPDVCYSWWVLASL 245 (358)
Q Consensus 167 L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~-~~GGf~gr~~k~~D~cys~w~~a~L 245 (358)
|++||++||||+.+|+.|+|+++|||||++|.++|+.+.++++++++||++||. ++|||+|||||.+|+|||||++++|
T Consensus 229 L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L 308 (437)
T 2h6f_B 229 IARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLL 308 (437)
T ss_dssp HHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHH
T ss_pred HHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999888899999999999998 7999999999999999999999999
Q ss_pred HHhCCC-------------CCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCcccccccccccccccccccccccccC
Q psy15438 246 HMLGRG-------------TWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCIS 312 (358)
Q Consensus 246 ~ll~~~-------------~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (358)
.+|++. .++|.+++++||+.||+. +.||| +
T Consensus 309 ~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~-----~~GGf--------------------------------~ 351 (437)
T 2h6f_B 309 PLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQC-----PAGGL--------------------------------L 351 (437)
T ss_dssp HHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBC-----TTSCB--------------------------------C
T ss_pred HHHhhhhhcccccccccccccCCHHHHHHHHHHHccC-----CCCCc--------------------------------c
Confidence 999752 258999999999985444 37999 9
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCC--------------CCCCCCcCccccCCcccc
Q psy15438 313 DRPLDIPDPFHTLFGVAALTMLDPP--------------TPDVLPVDPTYCMPVRTF 355 (358)
Q Consensus 313 ~~p~~~~D~~hT~~~l~~Ls~~~~~--------------~~~~~~~~~~~~~~~~~~ 355 (358)
|+|++.||+|||||+|+|||++++. .+.|.+|||+||||.+.+
T Consensus 352 d~Pg~~~D~yHT~y~L~gLsl~~~~~~~~~~~~~~~~~~~~~l~~i~p~~~i~~~~~ 408 (437)
T 2h6f_B 352 DKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKV 408 (437)
T ss_dssp SSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccccccccccccccCCcccCccccCCcccCCHHHH
Confidence 9999999999999999999999741 268999999999997654
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=3.2e-46 Score=358.76 Aligned_cols=239 Identities=19% Similarity=0.277 Sum_probs=222.1
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCCCCCchh
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHIL 92 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~ 92 (358)
..++++.++||+++|.+...++......+++..||.+|.+|.+++..+.++++++++||.++|++||||.+.+..++|+.
T Consensus 65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~ 144 (331)
T 3dss_B 65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR 144 (331)
T ss_dssp GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence 56899999999999975333332333468899999999999999987788999999999999999999999887889999
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhccc
Q psy15438 93 YTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCN 172 (358)
Q Consensus 93 ~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~ 172 (358)
.||+|+.+|.+++..+.++++++++||++||++||||+..|+.|+|+.+||||+++|.+++..+.++++++++||.++|+
T Consensus 145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~ 224 (331)
T 3dss_B 145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224 (331)
T ss_dssp HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence 99999999999998878899999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCC-CcccCCCCCCCChhHHHHHHHHHHHhCCC
Q psy15438 173 FDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPS-GGLNGRPEKLPDVCYSWWVLASLHMLGRG 251 (358)
Q Consensus 173 ~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~-GGf~gr~~k~~D~cys~w~~a~L~ll~~~ 251 (358)
+||||+++|++++|++||||++++|.++++.+.++++++++||+++|+++ |||+.+|++.+|++||||++++|++++..
T Consensus 225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~ 304 (331)
T 3dss_B 225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEE 304 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999988889999999999999986 99999999999999999999999999974
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2e-44 Score=356.97 Aligned_cols=237 Identities=21% Similarity=0.301 Sum_probs=218.3
Q ss_pred CCChHHHHHHHHhc-CCCCCcccccCCCCCchhHHHHHHHHHHHhcc-cCCCChHHHHHHHHhcCCCCCCcccccCCCcc
Q psy15438 61 DMPQDTIFDFITQC-IHPCGGVSASISHDPHILYTLSAVQIACLINR-EHELPVDKIVAYVSKLQQPDGSFFGDMYGEVD 138 (358)
Q Consensus 61 ~~~~~~~i~~i~~~-q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~-~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd 138 (358)
...++++++||++| |+.+|||+..+...++ .+|+++.+|.+|+. .+..+++++++||.++|++||||.+.++++++
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~D~~r~~--l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECLDASRPW--LCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGGTTCHHH--HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred cccHHHHHHHHHHcCCCCCCCcccccCCCcc--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence 46799999999999 8999999998776544 47889999999984 34456889999999999999999999999999
Q ss_pred cchhHHHHHHHHHhCCC---ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHH
Q psy15438 139 TRFSFCAVACLSLLGKL---DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWL 215 (358)
Q Consensus 139 ~~~ty~al~~l~ll~~~---~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL 215 (358)
+..||+|+.+|.++|.. +.++++++++||+++|++||||++.+++|+|.+.||||+++|.+++..+...++++++||
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L 229 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999863 567899999999999999999999999999999999999999999987767788999999
Q ss_pred HhcCCCCCcccCCCCCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCccCCCCCCccccccccc
Q psy15438 216 AERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCT 295 (358)
Q Consensus 216 ~~~Q~~~GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~ 295 (358)
+++|++||||+++|++.++++||||++++|.++|+.++++.+++++||+++|.+ +.|||
T Consensus 230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~-----~~GGf---------------- 288 (437)
T 2h6f_B 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMR-----FEGGF---------------- 288 (437)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCT-----TTCSB----------------
T ss_pred HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCC-----CCCCc----------------
Confidence 999999999999999999999999999999999998889999999999999996 47999
Q ss_pred ccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCC
Q psy15438 296 QVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDP 336 (358)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~ 336 (358)
.+||+|.+|++||||++++|++++.
T Consensus 289 ----------------~gRp~K~~D~cYSfw~~a~L~lL~~ 313 (437)
T 2h6f_B 289 ----------------QGRCNKLVDGCYSFWQAGLLPLLHR 313 (437)
T ss_dssp ----------------BSSTTSCBCTTHHHHTTTHHHHHHH
T ss_pred ----------------cCCCCCccchHHHHHHHHHHHHHhh
Confidence 8999999999999999999999963
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=2.5e-41 Score=329.04 Aligned_cols=236 Identities=16% Similarity=0.268 Sum_probs=214.6
Q ss_pred cchHHHHHHHHHhhcCC-------CCcccccc-------------------ccchHHHHHHHHHHHHHhCC-CCCCChHH
Q psy15438 14 FLGTKHAEYIKKYSDNK-------EDYEYCMS-------------------EYLRMSGMYWGITTLSLLDQ-LDDMPQDT 66 (358)
Q Consensus 14 l~~~~h~~yl~~~~~~~-------~~~~~~~~-------------------~~~~~~~~y~~l~~L~lL~~-~~~~~~~~ 66 (358)
+.+++.++||.++|..+ ..++|... |..++..||.+|.+|.+++. .+.+++++
T Consensus 67 ~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~ 146 (377)
T 1n4q_B 67 VNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEA 146 (377)
T ss_dssp SCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHH
T ss_pred cCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence 45899999999988732 13444332 34789999999999999994 56789999
Q ss_pred HHHHHHhcCCCCCccccc-CCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHH
Q psy15438 67 IFDFITQCIHPCGGVSAS-ISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCA 145 (358)
Q Consensus 67 ~i~~i~~~q~~dGGF~~~-~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~a 145 (358)
+++||+++|++||+|.+. ...+.++..||+|+.++.+++....++++++++||++||++||||+..|++|+|..+||||
T Consensus 147 ~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cA 226 (377)
T 1n4q_B 147 CLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCG 226 (377)
T ss_dssp HHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHH
T ss_pred HHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHH
Confidence 999999999999999987 5678999999999999999998777899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChh----cHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCC
Q psy15438 146 VACLSLLGKLDAI----NLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLP 221 (358)
Q Consensus 146 l~~l~ll~~~~~~----~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~ 221 (358)
+++|.+++..+.. +++++++||.++| +|||.++|++.+|++|+||+.++|.+|++.+.+|.+++.+||+.+|.+
T Consensus 227 laaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~ 304 (377)
T 1n4q_B 227 IASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDR 304 (377)
T ss_dssp HHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCT
T ss_pred HHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCC
Confidence 9999999986543 7899999999999 899999999999999999999999999998889999999999999998
Q ss_pred -CCcccCCCCCCCChhHHHHHHHHHHHhCCC
Q psy15438 222 -SGGLNGRPEKLPDVCYSWWVLASLHMLGRG 251 (358)
Q Consensus 222 -~GGf~gr~~k~~D~cys~w~~a~L~ll~~~ 251 (358)
+|||+.+|++.+|+.|||+++++|++++..
T Consensus 305 ~~GGf~~~p~~~~D~~HT~~~LagLsl~~~~ 335 (377)
T 1n4q_B 305 LVGGFAKWPDSHPDALHAYFGICGLSLMEES 335 (377)
T ss_dssp TTCSBCSSTTSCCBHHHHHHHHHHHHHTTCT
T ss_pred CCCCcCCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999864
No 9
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.4e-41 Score=330.55 Aligned_cols=237 Identities=20% Similarity=0.321 Sum_probs=210.7
Q ss_pred ccchHHHHHHHHHhhcCC--CCcccccc----------ccchHHHHHHHHHHHHHhCCC--CCCChHHHHHHHHhcCC--
Q psy15438 13 EFLGTKHAEYIKKYSDNK--EDYEYCMS----------EYLRMSGMYWGITTLSLLDQL--DDMPQDTIFDFITQCIH-- 76 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~--~~~~~~~~----------~~~~~~~~y~~l~~L~lL~~~--~~~~~~~~i~~i~~~q~-- 76 (358)
...+++.++||.+++... ...+|... +..+++.||+||.+|.+|+.. +.++|+++++||.+||+
T Consensus 52 ~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~ 131 (390)
T 3dra_B 52 NQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKD 131 (390)
T ss_dssp HHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCS
T ss_pred hHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCC
Confidence 446889999999987532 11344332 468999999999999999974 67899999999999998
Q ss_pred -C-CCcccccC-----------CCCCchhHHHHHHHHHHHhcccC-------------CCChHHHHHHHHhcCCCCCCcc
Q psy15438 77 -P-CGGVSASI-----------SHDPHILYTLSAVQIACLINREH-------------ELPVDKIVAYVSKLQQPDGSFF 130 (358)
Q Consensus 77 -~-dGGF~~~~-----------~~~~~~~~Ty~Al~~L~ll~~~~-------------~~~~~~~~~~l~s~Q~~dGgf~ 130 (358)
+ ||||...+ +.+.|++.||+|++++.+|+... .+|++++++||.+||+.||||+
T Consensus 132 ~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg 211 (390)
T 3dra_B 132 GINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFS 211 (390)
T ss_dssp STTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBC
T ss_pred CCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcC
Confidence 6 89999554 46899999999999999998665 6899999999999999999999
Q ss_pred cccCCCcccchhHHHHHHHHHhCCCChhcHHHHHHHHHhccc----------------------------CCCCCCCCCC
Q psy15438 131 GDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCN----------------------------FDGGFGSRPG 182 (358)
Q Consensus 131 ~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~----------------------------~dGGf~~~pg 182 (358)
..|+.|+|..+||||+++|.+|+.+ ..+.+++++||.++|. .+|||++||+
T Consensus 212 ~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~n 290 (390)
T 3dra_B 212 STIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGREN 290 (390)
T ss_dssp SSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTT
T ss_pred CCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCC
Confidence 9999999999999999999999986 5789999999999997 4799999999
Q ss_pred CCCcccHHHHHHHHHHhccc--CChhcHHHHHHHHHhc-CCC-CCcccCCCCCCCChhHHHHHHHHHHHhCC
Q psy15438 183 SESHAGLTYCCVGFLSITGH--LHEIDADKLAWWLAER-QLP-SGGLNGRPEKLPDVCYSWWVLASLHMLGR 250 (358)
Q Consensus 183 ~esh~~~T~calasL~llg~--~~~~~~~~~~~wL~~~-Q~~-~GGf~gr~~k~~D~cys~w~~a~L~ll~~ 250 (358)
+.+|++|+||++++|.+|++ .+.+|.+++.+||+.+ |.+ .|||+.+|++.+|++|||+++++|++++.
T Consensus 291 Kl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~ 362 (390)
T 3dra_B 291 KLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNH 362 (390)
T ss_dssp CCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCC
Confidence 99999999999999999995 5678999999999997 665 89999999999999999999999999974
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=2.3e-40 Score=329.29 Aligned_cols=256 Identities=16% Similarity=0.207 Sum_probs=219.2
Q ss_pred ccchHHHHHHHHHhhcCCCCccccc--cccchHHHHHHHHHHHHHhCCC------CCCC--hHHHHHHHHhcCCCCCccc
Q psy15438 13 EFLGTKHAEYIKKYSDNKEDYEYCM--SEYLRMSGMYWGITTLSLLDQL------DDMP--QDTIFDFITQCIHPCGGVS 82 (358)
Q Consensus 13 ~l~~~~h~~yl~~~~~~~~~~~~~~--~~~~~~~~~y~~l~~L~lL~~~------~~~~--~~~~i~~i~~~q~~dGGF~ 82 (358)
...+++.++||.+++.....++... .+..++..||.||.+|.+++.. +.++ |+++++||+++|++||+|.
T Consensus 108 ~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~ 187 (520)
T 3q7a_B 108 QGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFV 187 (520)
T ss_dssp HHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBB
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEe
Confidence 3468899999999987533332233 4578999999999999999964 2356 8999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCccc-----------------------ccCCCccc
Q psy15438 83 ASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFG-----------------------DMYGEVDT 139 (358)
Q Consensus 83 ~~~~~~~~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~-----------------------~~~~esd~ 139 (358)
+..+.+.++..||+|+.+|.+|+.....+++++++||++||++||||+. .|++|+|.
T Consensus 188 g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHg 267 (520)
T 3q7a_B 188 VCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHG 267 (520)
T ss_dssp SSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCH
T ss_pred cCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccch
Confidence 8877789999999999999999987667899999999999999999999 67999999
Q ss_pred chhHHHHHHHHHhCCC------ChhcHHHHHHHHHhccc---CCCCCCCCCCCCCcccHHHHHHHHHHhcccC-------
Q psy15438 140 RFSFCAVACLSLLGKL------DAINLSKAVEFILSCCN---FDGGFGSRPGSESHAGLTYCCVGFLSITGHL------- 203 (358)
Q Consensus 140 ~~ty~al~~l~ll~~~------~~~~~~~~v~~L~s~Q~---~dGGf~~~pg~esh~~~T~calasL~llg~~------- 203 (358)
.+|||||++|.+|+.+ +.++.+++++||..+|. ++|||.+||++.+|+||+||+.++|.+|++.
T Consensus 268 GyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~ 347 (520)
T 3q7a_B 268 GYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSR 347 (520)
T ss_dssp HHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhccccc
Confidence 9999999999999986 35789999999999996 4699999999999999999999999998864
Q ss_pred -------------------------ChhcHHHHHHHHH-hcCCCC---CcccCCCCCCCChhHHHHHHHHHHHhCCCCCC
Q psy15438 204 -------------------------HEIDADKLAWWLA-ERQLPS---GGLNGRPEKLPDVCYSWWVLASLHMLGRGTWI 254 (358)
Q Consensus 204 -------------------------~~~~~~~~~~wL~-~~Q~~~---GGf~gr~~k~~D~cys~w~~a~L~ll~~~~~~ 254 (358)
..+|.+++.+||+ .+|.+. |||..+|++.+|++|||+++++|++++.....
T Consensus 348 ~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~ 427 (520)
T 3q7a_B 348 KVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSH 427 (520)
T ss_dssp HC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEE
T ss_pred ccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Confidence 1368899999998 689987 99999999999999999999999999876444
Q ss_pred CHHHHHHHHHHhcCC
Q psy15438 255 NSAALRKFILASQVR 269 (358)
Q Consensus 255 d~~~l~~~ll~~Q~~ 269 (358)
+.+. .+.+....+.
T Consensus 428 ~~~~-~~~~~~~~~~ 441 (520)
T 3q7a_B 428 SPST-VSSNRLKFDA 441 (520)
T ss_dssp CHHH-HHHHHHHCCT
T ss_pred Chhh-HHHhhhcccc
Confidence 4444 4444444444
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.92 E-value=1.4e-23 Score=217.78 Aligned_cols=258 Identities=16% Similarity=0.099 Sum_probs=188.1
Q ss_pred chHHHHHHHHHhhcCCCCcccccc-ccchHHHHHHHHHHHHHhCCC-CCCChHHHHHHHHhcCCCC-------------C
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMS-EYLRMSGMYWGITTLSLLDQL-DDMPQDTIFDFITQCIHPC-------------G 79 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~-~~~~~~~~y~~l~~L~lL~~~-~~~~~~~~i~~i~~~q~~d-------------G 79 (358)
..++|++.|.+.+-...++++... -.+.+|.|.|++.+|..+|.. +....+++++||+++|..+ |
T Consensus 282 ~~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~G 361 (631)
T 2sqc_A 282 AFIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG 361 (631)
T ss_dssp HHHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCC
T ss_pred HHHHHHHHHHhceEEcCCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCC
Confidence 467788887776432222133222 247899999999999999953 3345789999999998642 4
Q ss_pred ccccc--CCCCCchhHHHHHHHHHHHhcccC----CCChHHHHHHHHhcCCCCCCcccccCC------------------
Q psy15438 80 GVSAS--ISHDPHILYTLSAVQIACLINREH----ELPVDKIVAYVSKLQQPDGSFFGDMYG------------------ 135 (358)
Q Consensus 80 GF~~~--~~~~~~~~~Ty~Al~~L~ll~~~~----~~~~~~~~~~l~s~Q~~dGgf~~~~~~------------------ 135 (358)
||+.. +...|++..|..++.+|..++... ...++++++||.++|++||||+.....
T Consensus 362 gW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~ 441 (631)
T 2sqc_A 362 GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT 441 (631)
T ss_dssp CBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred CCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence 44332 234588999988888888776421 124678999999999999999653210
Q ss_pred -CcccchhHHHHHHHHHhCCC-ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccC-ChhcHHHHH
Q psy15438 136 -EVDTRFSFCAVACLSLLGKL-DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHL-HEIDADKLA 212 (358)
Q Consensus 136 -esd~~~ty~al~~l~ll~~~-~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~-~~~~~~~~~ 212 (358)
.+++..|..++.+|..++.. ....++++++||+++|++||||.+.++. .+...|..++.+|..++.. ....+++++
T Consensus 442 d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg~-~~~y~Ta~~l~aL~~~g~~~~~~~i~rav 520 (631)
T 2sqc_A 442 DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGV-NYLYGTGAVVSALKAVGIDTREPYIQKAL 520 (631)
T ss_dssp CCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSBS-SHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCC-CchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 13445566777777777642 2457899999999999999999766653 2333455666677777653 235688999
Q ss_pred HHHHhcCCCCCcccCCC----------CCCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 213 WWLAERQLPSGGLNGRP----------EKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 213 ~wL~~~Q~~~GGf~gr~----------~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
+||+++|.+||||+..+ ...+|+..|+|++.+|..++..+....+++.+||.++|++ +|||
T Consensus 521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~------dGgw 591 (631)
T 2sqc_A 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP------DGGW 591 (631)
T ss_dssp HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCT------TSCC
T ss_pred HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCC------CCCc
Confidence 99999999999996542 3467999999999999999876444568899999999998 7999
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.92 E-value=7.9e-24 Score=222.39 Aligned_cols=257 Identities=16% Similarity=0.156 Sum_probs=191.5
Q ss_pred chHHHHHHHHHhhcCCCCccccccc--cchHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHhcCCCC----------
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSE--YLRMSGMYWGITTLSLLDQLDD----MPQDTIFDFITQCIHPC---------- 78 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~--~~~~~~~y~~l~~L~lL~~~~~----~~~~~~i~~i~~~q~~d---------- 78 (358)
...+|++.|.+.+-.. +.+..... .+.+|.|-|++.+|...+..+. ...+++++||+++|..+
T Consensus 357 ~~~~~l~~l~~~l~~~-~dG~~~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r 435 (732)
T 1w6k_A 357 AFQEHVSRIPDYLWMG-LDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYR 435 (732)
T ss_dssp HHHHHHHTSGGGEEEE-TTEEEECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTC
T ss_pred HHHHHHHHHHHhheeC-CCCceeCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCccccccc
Confidence 4667888887653321 22333332 3789999999999998874221 13478999999999755
Q ss_pred ----CcccccCC--CCCchhHHHHHHHHHHHhcccC-----CC---ChHHHHHHHHhcCCCCCCccccc-----------
Q psy15438 79 ----GGVSASIS--HDPHILYTLSAVQIACLINREH-----EL---PVDKIVAYVSKLQQPDGSFFGDM----------- 133 (358)
Q Consensus 79 ----GGF~~~~~--~~~~~~~Ty~Al~~L~ll~~~~-----~~---~~~~~~~~l~s~Q~~dGgf~~~~----------- 133 (358)
|||+.... ..|++..|..++.+|..+.... .+ .++++++||.++|++||||....
T Consensus 436 ~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i 515 (732)
T 1w6k_A 436 QMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELL 515 (732)
T ss_dssp CCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGG
T ss_pred CCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhC
Confidence 88876643 4589999999999998885422 22 35789999999999999996321
Q ss_pred -----CCC-----cccchhHHHHHHHHHhCCC--------ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHH
Q psy15438 134 -----YGE-----VDTRFSFCAVACLSLLGKL--------DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVG 195 (358)
Q Consensus 134 -----~~e-----sd~~~ty~al~~l~ll~~~--------~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~cala 195 (358)
.+. +.+..|..++.+|..++.. ....++++++||+++|++||||.++++. .+...|++++.
T Consensus 516 ~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~ 594 (732)
T 1w6k_A 516 NPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLE 594 (732)
T ss_dssp CCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHH
T ss_pred cchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHH
Confidence 111 1233455677777766531 1346899999999999999999987763 34456889999
Q ss_pred HHHhcccCCh-----hcHHHHHHHHHhcCCCCCcccCCC----------CCCCChhHHHHHHHHHHHhCCCCCCCHHHHH
Q psy15438 196 FLSITGHLHE-----IDADKLAWWLAERQLPSGGLNGRP----------EKLPDVCYSWWVLASLHMLGRGTWINSAALR 260 (358)
Q Consensus 196 sL~llg~~~~-----~~~~~~~~wL~~~Q~~~GGf~gr~----------~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~ 260 (358)
+|..+|.... ..++++++||+++|.++|||+... .+.+|++.|.|++.+|..++..+....++++
T Consensus 595 AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~~~~~i~r~v 674 (732)
T 1w6k_A 595 AFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQERGV 674 (732)
T ss_dssp HHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 9999987532 458899999999999999998643 4568999999999999888865444567889
Q ss_pred HHHHHhcCCCCCccccCCc
Q psy15438 261 KFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 261 ~~ll~~Q~~~~~~~~~GGf 279 (358)
+||.++|++ +|||
T Consensus 675 ~wL~~~Q~~------~Ggf 687 (732)
T 1w6k_A 675 RCLLEKQLP------NGDW 687 (732)
T ss_dssp HHHHHHCCT------TSCC
T ss_pred HHHHHhcCC------CCCc
Confidence 999999998 6999
No 13
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.88 E-value=1e-21 Score=203.71 Aligned_cols=222 Identities=21% Similarity=0.199 Sum_probs=164.6
Q ss_pred chHHHHHHHHHhhcCCC-----------Ccccc----ccccchHHHHHHHHHHHHHhCCCC----CCChHHHHHHHHhcC
Q psy15438 15 LGTKHAEYIKKYSDNKE-----------DYEYC----MSEYLRMSGMYWGITTLSLLDQLD----DMPQDTIFDFITQCI 75 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~-----------~~~~~----~~~~~~~~~~y~~l~~L~lL~~~~----~~~~~~~i~~i~~~q 75 (358)
..+|.++||++.+.... +.++. ......++.|.+++.+|..++... ....+++++||+++|
T Consensus 332 ~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q 411 (631)
T 2sqc_A 332 RLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQ 411 (631)
T ss_dssp HHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhc
Confidence 57799999999875321 11111 112356999999999999998632 123568999999999
Q ss_pred CCCCcccccCC-------------------CCCchhHHHHHHHHHHHhcc-cCCCChHHHHHHHHhcCCCCCCcccccCC
Q psy15438 76 HPCGGVSASIS-------------------HDPHILYTLSAVQIACLINR-EHELPVDKIVAYVSKLQQPDGSFFGDMYG 135 (358)
Q Consensus 76 ~~dGGF~~~~~-------------------~~~~~~~Ty~Al~~L~ll~~-~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~ 135 (358)
++||||+.... ..+++..|..++.+|..++. .....++++++||.++|++||||.+. ++
T Consensus 412 ~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~-wg 490 (631)
T 2sqc_A 412 SSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGR-WG 490 (631)
T ss_dssp CTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCS-SB
T ss_pred CCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCC-CC
Confidence 99999975321 12778899999999988864 22345789999999999999999643 22
Q ss_pred CcccchhHHHHHHHHHhCCC-ChhcHHHHHHHHHhcccCCCCCCCCC----------CCCCcccHHHHHHHHHHhcccCC
Q psy15438 136 EVDTRFSFCAVACLSLLGKL-DAINLSKAVEFILSCCNFDGGFGSRP----------GSESHAGLTYCCVGFLSITGHLH 204 (358)
Q Consensus 136 esd~~~ty~al~~l~ll~~~-~~~~~~~~v~~L~s~Q~~dGGf~~~p----------g~esh~~~T~calasL~llg~~~ 204 (358)
..++..|..++.+|..++.. +.+.++++++||+++|++||||+..+ +.++|+..|+||+.+|..++..+
T Consensus 491 ~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~ 570 (631)
T 2sqc_A 491 VNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAE 570 (631)
T ss_dssp SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSS
T ss_pred CCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCCCC
Confidence 22333344455556666642 34678999999999999999998643 45789999999999999999876
Q ss_pred hhcHHHHHHHHHhcCCCCCcccCCCCC---CCChhH
Q psy15438 205 EIDADKLAWWLAERQLPSGGLNGRPEK---LPDVCY 237 (358)
Q Consensus 205 ~~~~~~~~~wL~~~Q~~~GGf~gr~~k---~~D~cy 237 (358)
...++++++||.++|+++|||...... .+.+||
T Consensus 571 ~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~y 606 (631)
T 2sqc_A 571 SEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFY 606 (631)
T ss_dssp SHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEE
T ss_pred hHHHHHHHHHHHhccCCCCCcCCCCcccccccccce
Confidence 667899999999999999999877653 345553
No 14
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.86 E-value=6.9e-21 Score=200.08 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=169.4
Q ss_pred chHHHHHHHHHhhcCC--CC----------cc--cccc--ccchHHHHHHHHHHHHHhCCCC-----CCC---hHHHHHH
Q psy15438 15 LGTKHAEYIKKYSDNK--ED----------YE--YCMS--EYLRMSGMYWGITTLSLLDQLD-----DMP---QDTIFDF 70 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~--~~----------~~--~~~~--~~~~~~~~y~~l~~L~lL~~~~-----~~~---~~~~i~~ 70 (358)
..+|.++||+++|... .+ ++ |... ....+..|.+++.+|..++... ..+ .+++++|
T Consensus 410 ~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~w 489 (732)
T 1w6k_A 410 CLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAV 489 (732)
T ss_dssp HHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 5679999999887533 11 22 2211 2357889999999999886321 222 4789999
Q ss_pred HHhcCCCCCcccccCC---------------------CCCchhHHHHHHHHHHHhccc-C-------CCChHHHHHHHHh
Q psy15438 71 ITQCIHPCGGVSASIS---------------------HDPHILYTLSAVQIACLINRE-H-------ELPVDKIVAYVSK 121 (358)
Q Consensus 71 i~~~q~~dGGF~~~~~---------------------~~~~~~~Ty~Al~~L~ll~~~-~-------~~~~~~~~~~l~s 121 (358)
|+++|++||||+.... ..+.+..|.+++.+|..++.. + ...++++++||.+
T Consensus 490 Lls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~ 569 (732)
T 1w6k_A 490 LLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRR 569 (732)
T ss_dssp HHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHh
Confidence 9999999999964321 124677898999999887642 1 2347899999999
Q ss_pred cCCCCCCcccccCCCcccchhHHHHHHHHHhCCCCh-----hcHHHHHHHHHhcccCCCCCCCC----------CCCCCc
Q psy15438 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA-----INLSKAVEFILSCCNFDGGFGSR----------PGSESH 186 (358)
Q Consensus 122 ~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~-----~~~~~~v~~L~s~Q~~dGGf~~~----------pg~esh 186 (358)
+|++||||.+ .++..+...|++++.+|.++|.... ..++++++||+++|+.||||+.. ++.+++
T Consensus 570 ~Q~~DGsW~g-~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~ 648 (732)
T 1w6k_A 570 QQRADGSWEG-SWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQ 648 (732)
T ss_dssp HSCTTSCCCC-SSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCC
T ss_pred hcCCCCCccC-cCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCC
Confidence 9999999986 3556677788889999999987421 57899999999999999999864 356789
Q ss_pred ccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCC--CCChhH
Q psy15438 187 AGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEK--LPDVCY 237 (358)
Q Consensus 187 ~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k--~~D~cy 237 (358)
+..|.||+.+|..++..+...++++++||.++|.++|||...+.. .+.+||
T Consensus 649 v~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 649 IHNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA 701 (732)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence 999999999998888776677899999999999999999966532 344454
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.59 E-value=1.7e-13 Score=130.18 Aligned_cols=224 Identities=16% Similarity=0.087 Sum_probs=149.9
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCC---CCCChHH-------HHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQL---DDMPQDT-------IFDFITQCIHPCGGVSASISHDPHILYTLSAVQIA 101 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~---~~~~~~~-------~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L 101 (358)
|++...+..+++.-..+.+.-|...+.. ....+++ .+++++++|++||||+...+.+++...|.+++.+|
T Consensus 14 P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l 93 (310)
T 2wy7_A 14 PSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVF 93 (310)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHH
Confidence 6665555557777777777777776643 1222334 45569999999999999888889999999999999
Q ss_pred HHhcccCCCC---hHHHHHHHHh-cCCCCCCcccccC-------C------CcccchhHHHHHHHHHhC------CC-Ch
Q psy15438 102 CLINREHELP---VDKIVAYVSK-LQQPDGSFFGDMY-------G------EVDTRFSFCAVACLSLLG------KL-DA 157 (358)
Q Consensus 102 ~ll~~~~~~~---~~~~~~~l~s-~Q~~dGgf~~~~~-------~------esd~~~ty~al~~l~ll~------~~-~~ 157 (358)
........++ ++++++||.+ .|++||+|..... | ++++..|..++.+|...+ .. ..
T Consensus 94 ~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~ 173 (310)
T 2wy7_A 94 SLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLP 173 (310)
T ss_dssp HHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchH
Confidence 9887543344 4689999996 9999999976421 1 122333444454444332 11 13
Q ss_pred hcHHHHHHHHHhcccC-CCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCC-CCCh
Q psy15438 158 INLSKAVEFILSCCNF-DGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEK-LPDV 235 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q~~-dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k-~~D~ 235 (358)
+.++++++||.++|+. ++++ ...++.-+|.+.|.. .+.+++.|.++.. +|++-.+++. ..++
T Consensus 174 ~~i~~A~~~L~~~~~~~~~~y-----------~~a~~ayAL~l~g~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~v 237 (310)
T 2wy7_A 174 GSITKAGDFLEANYMNLQRSY-----------TVAIAGYALAQMGRL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNV 237 (310)
T ss_dssp HHHHHHHHHHHHHGGGCCCHH-----------HHHHHHHHHHHTTCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCHH-----------HHHHHHHHHHhcCCc----HHHHHHHHHHhcc-CCCCCCCCCCcccch
Confidence 5688999999999874 2211 122333455666754 3455666666533 4555444432 2267
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 236 CYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 236 cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
..|.|++.+|...+.. .+.+++++||.+.|++ +|||
T Consensus 238 e~Ta~aLlal~~~~~~--~~~~~~v~wL~~qq~~------~Ggw 273 (310)
T 2wy7_A 238 EATSYALLALLQLKDF--DFVPPVVRWLNEQRYY------GGGY 273 (310)
T ss_dssp HHHHHHHHHHHHHTCT--TTHHHHHHHHHHTTCC------CCST
T ss_pred HHHHHHHHHHHhcCCh--hhHHHHHHHHHHccCC------CCCe
Confidence 7889999888777653 5689999999999998 6999
No 16
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.58 E-value=1.9e-13 Score=127.57 Aligned_cols=216 Identities=14% Similarity=0.094 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHHHhCCC---CCCChHH-------HHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccCCC
Q psy15438 41 LRMSGMYWGITTLSLLDQL---DDMPQDT-------IFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHEL 110 (358)
Q Consensus 41 ~~~~~~y~~l~~L~lL~~~---~~~~~~~-------~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~~~ 110 (358)
+++....+.+.-|...+.. ....+++ .+++++++|++||||+..++.+++...|.+++.+|........+
T Consensus 7 ~~~~P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v 86 (277)
T 1qqf_A 7 IGMTPTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAI 86 (277)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCC
Confidence 4555566666666666542 1223444 44559999999999999888889999999999999988754334
Q ss_pred C---hHHHHHHHHh-cCCCCCCcccccC-------C------CcccchhHHHHHHHHHhC------CC-ChhcHHHHHHH
Q psy15438 111 P---VDKIVAYVSK-LQQPDGSFFGDMY-------G------EVDTRFSFCAVACLSLLG------KL-DAINLSKAVEF 166 (358)
Q Consensus 111 ~---~~~~~~~l~s-~Q~~dGgf~~~~~-------~------esd~~~ty~al~~l~ll~------~~-~~~~~~~~v~~ 166 (358)
+ ++++++||.+ .|++||+|..... | ++++..|..++.+|...+ .. ..+.++++++|
T Consensus 87 ~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~ 166 (277)
T 1qqf_A 87 DSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEY 166 (277)
T ss_dssp CHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHH
Confidence 4 4689999996 9999999976421 1 122333444454444332 11 13568899999
Q ss_pred HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCC-CCChhHHHHHHHHH
Q psy15438 167 ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEK-LPDVCYSWWVLASL 245 (358)
Q Consensus 167 L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k-~~D~cys~w~~a~L 245 (358)
|.++++.. .++........+|.+.|.. .+.+++.|.++.. +|++-++++. ..++.-|.|++.+|
T Consensus 167 L~~~~~~~----------~~~y~~a~~ayAl~l~g~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal 231 (277)
T 1qqf_A 167 LEASYLNL----------QRPYTVAIAGYALALMNKL----EEPYLTKFLNTAK-DRNRWEEPGQQLYNVEATSYALLAL 231 (277)
T ss_dssp HHHHHTTC----------CCHHHHHHHHHHHHHTTCC----CTTHHHHHHHHSB-TTTBCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccC----------CCHHHHHHHHHHHHHcCCh----HHHHHHHHHHhcc-CCCCCCCCCCccchhHHHHHHHHHH
Confidence 99998741 1121223344456667754 2345666666543 4555444442 23677888988888
Q ss_pred HHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 246 HMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 246 ~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
...+. ..+.+++++||.+.|++ +|||
T Consensus 232 ~~~~~--~~~~~~~v~wL~~qq~~------~Ggw 257 (277)
T 1qqf_A 232 LLLKD--FDSVPPVVRWLNDERYY------GGGY 257 (277)
T ss_dssp HHTTC--TTSHHHHHHHHHHCCCC------TTST
T ss_pred HhcCC--hhhHHHHHHHHHHccCC------CCCe
Confidence 77764 35789999999999998 6999
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.37 E-value=5e-11 Score=115.71 Aligned_cols=228 Identities=14% Similarity=0.015 Sum_probs=140.5
Q ss_pred CccccccccchHHHHHHHHHHHHHhCC---CCCC-------ChHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQ---LDDM-------PQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIA 101 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~---~~~~-------~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L 101 (358)
|++......++..-..+++..|.-.+. ++.. ..++.++||+++|++||||+...+..++...|.+++.+|
T Consensus 51 P~Gc~EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l 130 (367)
T 1hzf_A 51 PRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL 130 (367)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHH
Confidence 666544444565555566666665443 2211 134678899999999999988877677788888888888
Q ss_pred HHhcccCCC---ChHHHHHHHHhcCCCCCCcccccC------------CCcccchhHHHHHHHHHhCCC-----------
Q psy15438 102 CLINREHEL---PVDKIVAYVSKLQQPDGSFFGDMY------------GEVDTRFSFCAVACLSLLGKL----------- 155 (358)
Q Consensus 102 ~ll~~~~~~---~~~~~~~~l~s~Q~~dGgf~~~~~------------~esd~~~ty~al~~l~ll~~~----------- 155 (358)
......-.+ ..+++++||.+.|++||+|..... .++++..|.+++.+|...+..
T Consensus 131 ~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~ 210 (367)
T 1hzf_A 131 SLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQ 210 (367)
T ss_dssp HHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhh
Confidence 887654233 357899999999999999976411 123455566666666544321
Q ss_pred -ChhcHHHHHHHHHhc--ccCCCCCCCCCCCCCcccHH-HHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCc--ccCCC
Q psy15438 156 -DAINLSKAVEFILSC--CNFDGGFGSRPGSESHAGLT-YCCVGFLSITGHLHEIDADKLAWWLAERQLPSGG--LNGRP 229 (358)
Q Consensus 156 -~~~~~~~~v~~L~s~--Q~~dGGf~~~pg~esh~~~T-~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GG--f~gr~ 229 (358)
....++++++||.+. ++.. +. |+ ..+..+|.+.+... ...+.+.+-|.+.-..+|+ +-+++
T Consensus 211 ~~~~~i~ra~~yL~~~~~~~~~-----------~~-y~~Al~ayAL~l~~~~~-~~~~~~~~~L~~~a~~~~~~~~W~~~ 277 (367)
T 1hzf_A 211 RVEASISKASSFLGEKASAGLL-----------GA-HAAAITAYALTLTKAPA-DLRGVAHNNLMAMAQETGDNLYWGSV 277 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-----------CH-HHHHHHHHHHHHTTCCH-HHHHHHHHHHHTTCEECSSCEECC--
T ss_pred hhHHHHHHHHHHHHHhhhcccC-----------CH-HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhhhcCCCCccCCC
Confidence 123578899999887 3321 11 22 22223455555431 1233445556655333343 21221
Q ss_pred C----------------------CC-CChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 230 E----------------------KL-PDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 230 ~----------------------k~-~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
. .. .++.-|.|++.+|...+.. ......+++||.+.|+. .|||
T Consensus 278 ~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~-~~~~~~iv~WL~~qrn~------~Ggw 343 (367)
T 1hzf_A 278 TGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSF------QGGF 343 (367)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTS------TTCS
T ss_pred CCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccCc-hhhhHHHHHHHHhCcCC------CCCc
Confidence 0 01 2677788888887655432 23468899999999988 6999
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.35 E-value=3.3e-11 Score=112.35 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=129.5
Q ss_pred HHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHh-cCCCCCcccccCCC---------
Q psy15438 21 EYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQ-CIHPCGGVSASISH--------- 87 (358)
Q Consensus 21 ~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~-~q~~dGGF~~~~~~--------- 87 (358)
+.+.+++...+.++.+.......|.|-+++.+|..+++...++ .+++++||.+ .|++||+|......
T Consensus 45 ~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~ 124 (277)
T 1qqf_A 45 TQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGF 124 (277)
T ss_dssp HHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGG
T ss_pred HHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCC
Confidence 3366666654445545556688999999999999998643344 3589999996 99999999764321
Q ss_pred ----CCchhHHHHHHHHHHHhcc-----cC--CCChHHHHHHHHhcCCC-CCCcccccCCCcccchhHHHHHHHHHhCCC
Q psy15438 88 ----DPHILYTLSAVQIACLINR-----EH--ELPVDKIVAYVSKLQQP-DGSFFGDMYGEVDTRFSFCAVACLSLLGKL 155 (358)
Q Consensus 88 ----~~~~~~Ty~Al~~L~ll~~-----~~--~~~~~~~~~~l~s~Q~~-dGgf~~~~~~esd~~~ty~al~~l~ll~~~ 155 (358)
++++..|..++.+|...+. .+ ...++++++||.++++. +++|. ...+..+|.+.|..
T Consensus 125 ~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~-----------~a~~ayAl~l~g~~ 193 (277)
T 1qqf_A 125 RNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYT-----------VAIAGYALALMNKL 193 (277)
T ss_dssp GSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHH-----------HHHHHHHHHHTTCC
T ss_pred CCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHH-----------HHHHHHHHHHcCCh
Confidence 2345567666666654432 11 12467899999998764 22222 22333445566653
Q ss_pred ChhcHHHHHHHHHhcccCCCCCCCCCCCC-CcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCCCCCCCC
Q psy15438 156 DAINLSKAVEFILSCCNFDGGFGSRPGSE-SHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPD 234 (358)
Q Consensus 156 ~~~~~~~~v~~L~s~Q~~dGGf~~~pg~e-sh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D 234 (358)
.+.+++.+.++.. +|++...++.. ..+..|.+|+.+|...+. ..+.+++++||.++|+++|||..
T Consensus 194 ----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s------- 259 (277)
T 1qqf_A 194 ----EEPYLTKFLNTAK-DRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS------- 259 (277)
T ss_dssp ----CTTHHHHHHHHSB-TTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------
T ss_pred ----HHHHHHHHHHhcc-CCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------
Confidence 3456677776554 66665555431 134456777777766654 35688999999999999999986
Q ss_pred hhHHHHHHHHH
Q psy15438 235 VCYSWWVLASL 245 (358)
Q Consensus 235 ~cys~w~~a~L 245 (358)
+-.|.+++-+|
T Consensus 260 Tq~T~~aL~AL 270 (277)
T 1qqf_A 260 TQATFMVFQAL 270 (277)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 33455555444
No 19
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.31 E-value=7.8e-11 Score=111.68 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=124.8
Q ss_pred HHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHh-cCCCCCcccccCCC------
Q psy15438 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQ-CIHPCGGVSASISH------ 87 (358)
Q Consensus 18 ~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~-~q~~dGGF~~~~~~------ 87 (358)
+-++.+.+++...+.++.+.......|.|-+++.+|..+.+...++ .+++++||.+ .|++||+|....+.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~ 137 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 137 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence 3333466666654445545555678999999999999998643343 3589999996 99999999764321
Q ss_pred -------CCchhHHHHHHHHHHHhcc-----cC--CCChHHHHHHHHhcCCC-CCCcccccCCCcccchhHHHHHHHHHh
Q psy15438 88 -------DPHILYTLSAVQIACLINR-----EH--ELPVDKIVAYVSKLQQP-DGSFFGDMYGEVDTRFSFCAVACLSLL 152 (358)
Q Consensus 88 -------~~~~~~Ty~Al~~L~ll~~-----~~--~~~~~~~~~~l~s~Q~~-dGgf~~~~~~esd~~~ty~al~~l~ll 152 (358)
++++..|..++.+|...+. .+ ...++++++||.++|+. +++|. .-.+..+|.+.
T Consensus 138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~-----------~a~~ayAL~l~ 206 (310)
T 2wy7_A 138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYT-----------VAIAGYALAQM 206 (310)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHH-----------HHHHHHHHHHT
T ss_pred CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHH-----------HHHHHHHHHhc
Confidence 2345567666666655432 11 12467899999998764 22222 22233345556
Q ss_pred CCCChhcHHHHHHHHHhcccCCCCCCCCCCCC-CcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccC
Q psy15438 153 GKLDAINLSKAVEFILSCCNFDGGFGSRPGSE-SHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 153 ~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~e-sh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
|.. .+.+++.|.++.. +|++...++.. ..+..|.+|+.+|...+. ..+++++++||.++|+++|||..
T Consensus 207 g~~----~~~~l~~l~~~~~-~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s 275 (310)
T 2wy7_A 207 GRL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS 275 (310)
T ss_dssp TCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC
T ss_pred CCc----HHHHHHHHHHhcc-CCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec
Confidence 653 4566677776543 56555555431 134567777777766654 35688999999999999999975
No 20
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=1.1e-09 Score=122.31 Aligned_cols=224 Identities=10% Similarity=0.081 Sum_probs=143.1
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCCCCChHH-------HHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHh
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDT-------IFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLI 104 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~~~-------~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll 104 (358)
|++...+..+++....+++.-|.-.+..+...+++ .+++++++|++||||+..++..++.+.|.+++.+|..+
T Consensus 835 PyGC~EQ~~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a 914 (1325)
T 2pn5_A 835 PTGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTA 914 (1325)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHH
Confidence 55555555567666666666665555433222334 45566899999999999998889999999999999988
Q ss_pred cccCC-CC---hHHHHHHHHhcCCCCCCcccccC-------CCcccchhHHHHHHHHHhCC--C---ChhcHHHHHHHHH
Q psy15438 105 NREHE-LP---VDKIVAYVSKLQQPDGSFFGDMY-------GEVDTRFSFCAVACLSLLGK--L---DAINLSKAVEFIL 168 (358)
Q Consensus 105 ~~~~~-~~---~~~~~~~l~s~Q~~dGgf~~~~~-------~esd~~~ty~al~~l~ll~~--~---~~~~~~~~v~~L~ 168 (358)
..... ++ .+++++||.+.|++||+|..... |+.+...+|++.+..+|+.. . ....++++++||.
T Consensus 915 ~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~ 994 (1325)
T 2pn5_A 915 VKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLS 994 (1325)
T ss_dssp TTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHH
T ss_pred HhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHH
Confidence 65432 44 56899999999999999975311 22233445554333344433 1 1235788999999
Q ss_pred hcccC-CCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC--CCC-cccCCCCCCCChhHHHHHHHH
Q psy15438 169 SCCNF-DGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL--PSG-GLNGRPEKLPDVCYSWWVLAS 244 (358)
Q Consensus 169 s~Q~~-dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~--~~G-Gf~gr~~k~~D~cys~w~~a~ 244 (358)
+.|+. +++|+ -.++.-+|.+.+.. ..+++++.|.++.. .++ +... ....++.-|-|++.+
T Consensus 995 ~~~~~~~~~~~-----------~a~~ayaL~l~g~~---~~~~~l~~L~~~~~~~~~~~~~~w--~~~s~ve~tA~aLla 1058 (1325)
T 2pn5_A 995 NQFGSINNAYD-----------LSIATYAMMLNGHT---MKEEALNKLIDMSFIDADKNERFW--NTTNPIETTAYALLS 1058 (1325)
T ss_dssp HHGGGCCCHHH-----------HHHHHHHHHHHTCT---THHHHHHHHHHTCEEETTTTEEEC--CSSSHHHHHHHHHHH
T ss_pred HhhcccCCHHH-----------HHHHHHHHHhcCCc---hHHHHHHHHHhhhhhccCCCcccC--CCCCchHHHHHHHHH
Confidence 98764 33332 11222256666653 25666777776532 221 2111 123467778888877
Q ss_pred HHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 245 LHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 245 L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
|...+.. ....++.+||++.|+. .|||
T Consensus 1059 ll~~~~~--~~~~~~v~wL~~q~~~------~g~w 1085 (1325)
T 2pn5_A 1059 FVMAEKY--TDGIPVMNWLVNQRYV------TGSF 1085 (1325)
T ss_dssp HHHTTCH--HHHHHHHHHHHTTCCT------TSSC
T ss_pred Hhhhccc--hhhHHHHHHHHhccCC------CCCc
Confidence 7666532 3457889999998887 6999
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.14 E-value=2.4e-09 Score=115.44 Aligned_cols=225 Identities=15% Similarity=0.084 Sum_probs=143.8
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCC---CCCh-------HHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLD---DMPQ-------DTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIA 101 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~---~~~~-------~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L 101 (358)
|++...+..+++....+++.-|...+... ...+ ++.+++++++|++||||+...+..++.+-|.+++..|
T Consensus 259 PyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l 338 (915)
T 2hr0_B 259 PSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVF 338 (915)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHH
T ss_pred CCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHH
Confidence 66655555677666666766666655321 1112 3456678899999999999887778888888888888
Q ss_pred HHhcccCCCC---hHHHHHHHHh-cCCCCCCccccc--------CC-----CcccchhHHHHHHHHHhCCC-------Ch
Q psy15438 102 CLINREHELP---VDKIVAYVSK-LQQPDGSFFGDM--------YG-----EVDTRFSFCAVACLSLLGKL-------DA 157 (358)
Q Consensus 102 ~ll~~~~~~~---~~~~~~~l~s-~Q~~dGgf~~~~--------~~-----esd~~~ty~al~~l~ll~~~-------~~ 157 (358)
........++ .+++++||.+ .|.+||+|.... ++ ++++..|..++.+|...+.. ..
T Consensus 339 ~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~ 418 (915)
T 2hr0_B 339 SLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLP 418 (915)
T ss_dssp HTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHH
T ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccch
Confidence 7775433333 5788999995 999999996531 11 23444455566666555432 12
Q ss_pred hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCc-ccCCCCCCCChh
Q psy15438 158 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGG-LNGRPEKLPDVC 236 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GG-f~gr~~k~~D~c 236 (358)
..+.++++||.+.+..- .++........+|.+.|.. .+.+++.|.+... +|. |.+......|+.
T Consensus 419 ~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~g~~----a~~~l~~L~~~~~-~~~~w~~~~~~~~~ve 483 (915)
T 2hr0_B 419 GSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMGRL----KGPLLNKFLTTAK-DKNRWEDPGKQLYNVE 483 (915)
T ss_dssp HHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTTTCC----CHHHHHHHHHTSB-TTTBCCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHcCCh----HHHHHHHHHhhcc-CCCCCCCCCCCccchH
Confidence 35778999999876531 0111112222356666653 3455666666432 343 332211223677
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 237 YSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 237 ys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
-|.|++.+|...+.. ....++.+||++.|+. .|||
T Consensus 484 ~TayaLlall~~~~~--~~~~~~v~wL~~qq~~------~Ggw 518 (915)
T 2hr0_B 484 ATSYALLALLQLKDF--DFVPPVVRWLNEQRYY------GGGY 518 (915)
T ss_dssp HHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCS------SSSC
T ss_pred HHHHHHHHHHhcCCh--hhHHHHHHHHHhcccC------CCCc
Confidence 788998888777754 3578899999998888 6999
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.01 E-value=9.3e-09 Score=115.39 Aligned_cols=234 Identities=16% Similarity=0.129 Sum_probs=149.1
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHhcCCCCCcccccCC----CCCchhHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQ-------DTIFDFITQCIHPCGGVSASIS----HDPHILYTLSAVQI 100 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~~-------~~~i~~i~~~q~~dGGF~~~~~----~~~~~~~Ty~Al~~ 100 (358)
|++...+..+++.-..+++.-|...+.++...+ ++.++|++++|++||||+...+ ..++.+-|..++..
T Consensus 946 PyGC~EQ~ms~~~P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~ 1025 (1451)
T 4acq_A 946 PYGCGEXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKT 1025 (1451)
T ss_dssp CCSSTTTTHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHH
T ss_pred CCCchhhhhhhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHH
Confidence 666555556676666666666666555432222 3567899999999999998754 34778888888888
Q ss_pred HHHhccc---CCCChHHHHHHHHhcCCCCCCcccc-c-------CC-CcccchhHHHHHHHHHhCCC-ChhcHHHHHHHH
Q psy15438 101 ACLINRE---HELPVDKIVAYVSKLQQPDGSFFGD-M-------YG-EVDTRFSFCAVACLSLLGKL-DAINLSKAVEFI 167 (358)
Q Consensus 101 L~ll~~~---~~~~~~~~~~~l~s~Q~~dGgf~~~-~-------~~-esd~~~ty~al~~l~ll~~~-~~~~~~~~v~~L 167 (358)
|...... +....+++++||.+.|++||+|... + +| +.++..|..++.+|...|.. ....++++++||
T Consensus 1026 l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L 1105 (1451)
T 4acq_A 1026 FAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCL 1105 (1451)
T ss_dssp HHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred HHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 8877543 3334678999999999999999742 1 12 34566677777777777653 245688999999
Q ss_pred HhcccC--CCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCccc--CCCCC------------
Q psy15438 168 LSCCNF--DGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLN--GRPEK------------ 231 (358)
Q Consensus 168 ~s~Q~~--dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~--gr~~k------------ 231 (358)
.+.... +|+-+ .+.....-...||++.|.. ...+.+.+-|.+....+||.. +++.+
T Consensus 1106 ~~~~~~~~~~~~~------~~~y~~AllAyAlal~g~~--~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~ 1177 (1451)
T 4acq_A 1106 ESAWKTAQEGDHG------SHVYTKALLAYAFALAGNQ--DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQ 1177 (1451)
T ss_dssp HHHHHHHTSSCSS------STHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCC
T ss_pred HHhhhhccccccc------CChHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccC
Confidence 876221 12111 1222223334456777752 223445666666655556621 22221
Q ss_pred --CCChhHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 232 --LPDVCYSWWVLASLHMLGRG----TWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 232 --~~D~cys~w~~a~L~ll~~~----~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
..++.-|-|++-+|..++.. +......+.+||.+.|+. .|||
T Consensus 1178 ~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~------~Ggf 1225 (1451)
T 4acq_A 1178 APSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNA------QGGF 1225 (1451)
T ss_dssp TTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCT------TSCC
T ss_pred CchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCC------CCCc
Confidence 24667788887777666521 222367789999998887 6999
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.00 E-value=2.2e-08 Score=97.08 Aligned_cols=200 Identities=15% Similarity=0.087 Sum_probs=122.2
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCC---ChHHHHHHHHhcCCCCCcccccCC-----
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDM---PQDTIFDFITQCIHPCGGVSASIS----- 86 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~---~~~~~i~~i~~~q~~dGGF~~~~~----- 86 (358)
.+++-++++...+...+.++++..+....|++-+++.+|..+++.-.+ ..+++++||.+.|++||+|.....
T Consensus 92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~ 171 (367)
T 1hzf_A 92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS 171 (367)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence 456666777777765444444544456789999999999998854222 347899999999999999976421
Q ss_pred -------CCCchhHHHHHHHHHHHhccc-C-----------CCChHHHHHHHHhc--CCCCCCcccccCCCcccchhHHH
Q psy15438 87 -------HDPHILYTLSAVQIACLINRE-H-----------ELPVDKIVAYVSKL--QQPDGSFFGDMYGEVDTRFSFCA 145 (358)
Q Consensus 87 -------~~~~~~~Ty~Al~~L~ll~~~-~-----------~~~~~~~~~~l~s~--Q~~dGgf~~~~~~esd~~~ty~a 145 (358)
.++++..|.+++.+|...+.. . ...++++++||.+. ++.. +......+
T Consensus 172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~-----------~~y~~Al~ 240 (367)
T 1hzf_A 172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLL-----------GAHAAAIT 240 (367)
T ss_dssp GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCC-----------CHHHHHHH
T ss_pred ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccC-----------CHHHHHHH
Confidence 124466777777777544321 1 11357899999876 3321 12111122
Q ss_pred HHHHHHhCCCChhcHHHHHHHHHhcccCCCC---CCCCCC---------------------CC-CcccHHHHHHHHHHhc
Q psy15438 146 VACLSLLGKLDAINLSKAVEFILSCCNFDGG---FGSRPG---------------------SE-SHAGLTYCCVGFLSIT 200 (358)
Q Consensus 146 l~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGG---f~~~pg---------------------~e-sh~~~T~calasL~ll 200 (358)
..+|.+.+.. ....+.+.+-|.+.-..+|+ |+.... .. ..+..|.+||.+|...
T Consensus 241 ayAL~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~ 319 (367)
T 1hzf_A 241 AYALTLTKAP-ADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLH 319 (367)
T ss_dssp HHHHHHTTCC-HHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCc-HHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhc
Confidence 2344555542 22334556666665443444 433110 11 1455677888777654
Q ss_pred ccCChhcHHHHHHHHHhcCCCCCcccC
Q psy15438 201 GHLHEIDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 201 g~~~~~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
+. +.....+.++||.+.|+.+|||..
T Consensus 320 ~~-~~~~~~~iv~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 320 EG-KAEMADQASAWLTRQGSFQGGFRS 345 (367)
T ss_dssp TC-SSHHHHHHHHHHHHHTTSTTCSCS
T ss_pred cC-chhhhHHHHHHHHhCcCCCCCccc
Confidence 32 234578899999999999999974
No 24
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.72 E-value=7e-07 Score=101.76 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=140.0
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCCC---CCChHHHHHH-------HHhcCCCCCcccccCCCCCchhHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQLD---DMPQDTIFDF-------ITQCIHPCGGVSASISHDPHILYTLSAVQIA 101 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~~---~~~~~~~i~~-------i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L 101 (358)
|++...+..+++....+++.-|...+... ...+++++++ +++.|++||||+...+..++.+-|.+++..|
T Consensus 1006 PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l 1085 (1661)
T 2b39_A 1006 PSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVF 1085 (1661)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHH
T ss_pred CCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHH
Confidence 66655555677666777777777666432 2234455555 4568999999999887788899998899888
Q ss_pred HHhcccCCCC---hHHHHHHHHh-cCCCCCCccccc--------CC-----CcccchhHHHHHHHHHhCCC-------Ch
Q psy15438 102 CLINREHELP---VDKIVAYVSK-LQQPDGSFFGDM--------YG-----EVDTRFSFCAVACLSLLGKL-------DA 157 (358)
Q Consensus 102 ~ll~~~~~~~---~~~~~~~l~s-~Q~~dGgf~~~~--------~~-----esd~~~ty~al~~l~ll~~~-------~~ 157 (358)
........++ ..++++||.+ .|.+||.|.... ++ ++++..|..++.+|...+.. ..
T Consensus 1086 ~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~ 1165 (1661)
T 2b39_A 1086 ALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLG 1165 (1661)
T ss_dssp HHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHH
T ss_pred HhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchh
Confidence 8876543333 5688999995 999999996421 11 12454455555555544432 12
Q ss_pred hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCc-ccCCCCCCCChh
Q psy15438 158 INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGG-LNGRPEKLPDVC 236 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GG-f~gr~~k~~D~c 236 (358)
..+.++++||.+.... + .+.........+|+++|.. .+++++.|.+... +|. |....+...|+.
T Consensus 1166 ~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~----a~~~l~~L~~~~~-~~~~W~~~~~~~~~vE 1230 (1661)
T 2b39_A 1166 RSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL----EGDRLTKFLNTAK-EKNRWEEPNQKLYNVE 1230 (1661)
T ss_dssp HHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc----HHHHHHHHHhhcc-CCCCCCCCCCCcchHH
Confidence 3567899999775321 1 1111112223456667764 3556667766543 232 222111223566
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 237 YSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 237 ys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
-+-|++.++...+.. .....+.+||++.|+. .|||
T Consensus 1231 ~tayaLlall~~~~~--~~~~~iv~wL~~qr~~------~gg~ 1265 (1661)
T 2b39_A 1231 ATSYALLALLARKDY--DTTPPVVRWLNEQRYY------GGGY 1265 (1661)
T ss_dssp HHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTB------TTBB
T ss_pred HHHHHHHHHHhcCCh--hhHHHHHHHHHhcccC------CCCc
Confidence 677777777776654 3468889999998877 6999
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.70 E-value=4.3e-08 Score=94.99 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=95.2
Q ss_pred hHHHHHHHHhcCCCCCcccccCC--------------------------------------CCCchhHHHHHHHHHHHhc
Q psy15438 64 QDTIFDFITQCIHPCGGVSASIS--------------------------------------HDPHILYTLSAVQIACLIN 105 (358)
Q Consensus 64 ~~~~i~~i~~~q~~dGGF~~~~~--------------------------------------~~~~~~~Ty~Al~~L~ll~ 105 (358)
-+++.+.|.+.|+++|||.-... ..+|...|...+.+|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 45689999999999999954210 1245567877777776653
Q ss_pred cc-C-------CCChHHHHHHHHhcCCCCCCcccc-cCC-Ccccc------hhHHHHHHHHHhCC--C------------
Q psy15438 106 RE-H-------ELPVDKIVAYVSKLQQPDGSFFGD-MYG-EVDTR------FSFCAVACLSLLGK--L------------ 155 (358)
Q Consensus 106 ~~-~-------~~~~~~~~~~l~s~Q~~dGgf~~~-~~~-esd~~------~ty~al~~l~ll~~--~------------ 155 (358)
.. . +...+++++||+++|.++|||..+ +.. ..... .|--++..|..++. .
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 32 1 123578999999999999999764 221 10111 12223333333322 1
Q ss_pred ChhcHHHHHHHHHhcccC-CCCCCCCCCCC---------------CcccHHHHHHHH-HHhcccCC--h---hcHHHHHH
Q psy15438 156 DAINLSKAVEFILSCCNF-DGGFGSRPGSE---------------SHAGLTYCCVGF-LSITGHLH--E---IDADKLAW 213 (358)
Q Consensus 156 ~~~~~~~~v~~L~s~Q~~-dGGf~~~pg~e---------------sh~~~T~calas-L~llg~~~--~---~~~~~~~~ 213 (358)
....++++++||+++|.. ||.|- +++.. .-...+.-++.. +.+|+... . ..++++++
T Consensus 243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~ 321 (408)
T 1r76_A 243 ALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA 321 (408)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 124678999999999999 99876 54321 001111111211 23343322 1 13789999
Q ss_pred HHHhcCCCCCccc
Q psy15438 214 WLAERQLPSGGLN 226 (358)
Q Consensus 214 wL~~~Q~~~GGf~ 226 (358)
||.+.|.++|+|-
T Consensus 322 WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 322 WLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHSCCCC----
T ss_pred HHHHhhcCCCcee
Confidence 9999999999987
No 26
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.60 E-value=8.5e-06 Score=86.08 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=76.0
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCC---CCCChHHHHHH-------HHhcCCCCCcccccCCCCCchhHHHHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQL---DDMPQDTIFDF-------ITQCIHPCGGVSASISHDPHILYTLSAVQIA 101 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~---~~~~~~~~i~~-------i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L 101 (358)
|++...+..+++....|++.-|...+.. ....++++.++ +++.|++||||+...+.+++.+-|.+++.+|
T Consensus 328 P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l 407 (767)
T 4fxk_B 328 PRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL 407 (767)
T ss_dssp CCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHH
T ss_pred cccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHH
Confidence 6665556667777788888888887752 23334555555 4567899999999988888999998899999
Q ss_pred HHhcccCCCC---hHHHHHHHHhcCCCCCCccc
Q psy15438 102 CLINREHELP---VDKIVAYVSKLQQPDGSFFG 131 (358)
Q Consensus 102 ~ll~~~~~~~---~~~~~~~l~s~Q~~dGgf~~ 131 (358)
........+| ..++++||.+.|.+||.|..
T Consensus 408 ~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 408 SLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp HHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHhhcCcchHHHHHHHHHHHHhhhhcccchh
Confidence 8886654444 45788999999999999974
No 27
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.58 E-value=1.5e-06 Score=93.72 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=116.4
Q ss_pred HHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHh-cCCCCCcccccCCC-----------
Q psy15438 23 IKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQ-CIHPCGGVSASISH----------- 87 (358)
Q Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~-~q~~dGGF~~~~~~----------- 87 (358)
+...+...+.++++.......|+|-+++..|..+.+...++ .+++++||.+ .|.++|+|......
T Consensus 308 ll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~ 387 (915)
T 2hr0_B 308 QLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRN 387 (915)
T ss_dssp HGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCC
T ss_pred HHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccC
Confidence 33344444455556666778999999999999888543333 4678999995 99999999653210
Q ss_pred --CCchhHHHHHHHHHHHhccc-----CC--CChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChh
Q psy15438 88 --DPHILYTLSAVQIACLINRE-----HE--LPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAI 158 (358)
Q Consensus 88 --~~~~~~Ty~Al~~L~ll~~~-----~~--~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~ 158 (358)
++++..|.+++.+|...+.. +. ..++++++||.+.+..- .+......+..+|.+.|..
T Consensus 388 ~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~----------~~~y~~a~layAL~l~g~~--- 454 (915)
T 2hr0_B 388 NNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNL----------QRSYTVAIAGYALAQMGRL--- 454 (915)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGC----------CSHHHHHHHHHHHHTTTCC---
T ss_pred ccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhcc----------CCHHHHHHHHHHHHHcCCh---
Confidence 23455666666666655432 11 13568899999876541 1111111122245555542
Q ss_pred cHHHHHHHHHhcccCCCCCCCCCCCC-CcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccC
Q psy15438 159 NLSKAVEFILSCCNFDGGFGSRPGSE-SHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 159 ~~~~~v~~L~s~Q~~dGGf~~~pg~e-sh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
.+.+++.|.++.. +|.+-..++.. .++..|.+|+.+|...+.. ....++++||.++|+.+|||..
T Consensus 455 -a~~~l~~L~~~~~-~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 455 -KGPLLNKFLTTAK-DKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp -CHHHHHHHHHTSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS
T ss_pred -HHHHHHHHHhhcc-CCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc
Confidence 4566677766543 45432223221 2455678888888777754 3478889999999999999974
No 28
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.50 E-value=8.2e-08 Score=90.57 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCCCCcccccC-------------CCCCchhHHHHHHHHHHHhcccC-----CCChHHHHHHHHhcCCCCC
Q psy15438 66 TIFDFITQCIHPCGGVSASI-------------SHDPHILYTLSAVQIACLINREH-----ELPVDKIVAYVSKLQQPDG 127 (358)
Q Consensus 66 ~~i~~i~~~q~~dGGF~~~~-------------~~~~~~~~Ty~Al~~L~ll~~~~-----~~~~~~~~~~l~s~Q~~dG 127 (358)
++.+-|.+.|+++|||.-.. ...+|...|...+..|+-+.... +...+++++||+++|.++|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 45889999999999997532 12367778877777776653211 2235789999999999999
Q ss_pred Ccccc-cCC-Cccc------chhHHHHHHHHHhCC----C------------ChhcHHHHHHHHHhcccCCCCCCCCCCC
Q psy15438 128 SFFGD-MYG-EVDT------RFSFCAVACLSLLGK----L------------DAINLSKAVEFILSCCNFDGGFGSRPGS 183 (358)
Q Consensus 128 gf~~~-~~~-esd~------~~ty~al~~l~ll~~----~------------~~~~~~~~v~~L~s~Q~~dGGf~~~pg~ 183 (358)
||..+ +.. .-.. -.|--++..|..++. . ....++++++||+++|..||||-.+++.
T Consensus 115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~ 194 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA 194 (332)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecc
Confidence 99874 221 1111 113334444554431 1 1245789999999999999998777664
Q ss_pred CCcccHHHH-------------H---HHHH-HhcccCChh----cHHHHHHHHHhcCCC
Q psy15438 184 ESHAGLTYC-------------C---VGFL-SITGHLHEI----DADKLAWWLAERQLP 221 (358)
Q Consensus 184 esh~~~T~c-------------a---lasL-~llg~~~~~----~~~~~~~wL~~~Q~~ 221 (358)
. |...|+. + +..+ .+++..... .++++++||.+.|.+
T Consensus 195 q-ydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 195 Q-HGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp E-ECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred c-cccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 2 2222222 2 2211 233433311 378899999999983
No 29
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.47 E-value=2.9e-06 Score=94.84 Aligned_cols=207 Identities=11% Similarity=0.055 Sum_probs=125.4
Q ss_pred hHHHHHHH-------HHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCCC-CC---hHHHHHHHHhcCCCCCccccc
Q psy15438 16 GTKHAEYI-------KKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD-MP---QDTIFDFITQCIHPCGGVSAS 84 (358)
Q Consensus 16 ~~~h~~yl-------~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~-~~---~~~~i~~i~~~q~~dGGF~~~ 84 (358)
+++.+++| ..++...+.++++..+....|.|-+++.+|..+.+... ++ .+++++||.+.|.+||.|...
T Consensus 867 ~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 867 IDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 45566666 44555544555566667889999999999999875422 33 468999999999999998653
Q ss_pred CC---------CCCchhHHHHHHHHHHHhccc---CCCChHHHHHHHHhcCCC-CCCcccccCCCcccchhHHHHHHHHH
Q psy15438 85 IS---------HDPHILYTLSAVQIACLINRE---HELPVDKIVAYVSKLQQP-DGSFFGDMYGEVDTRFSFCAVACLSL 151 (358)
Q Consensus 85 ~~---------~~~~~~~Ty~Al~~L~ll~~~---~~~~~~~~~~~l~s~Q~~-dGgf~~~~~~esd~~~ty~al~~l~l 151 (358)
.. ....+..|.+++.+|.-.+.. ....++++++||.+.++. +++|.. -++..+|.+
T Consensus 947 ~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~-----------a~~ayaL~l 1015 (1325)
T 2pn5_A 947 GAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDL-----------SIATYAMML 1015 (1325)
T ss_dssp SCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHH-----------HHHHHHHHH
T ss_pred ccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHH-----------HHHHHHHHh
Confidence 21 112344443334343322212 112467899999998765 444432 111225566
Q ss_pred hCCCChhcHHHHHHHHHhccc--CCC-CCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCcccCC
Q psy15438 152 LGKLDAINLSKAVEFILSCCN--FDG-GFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGR 228 (358)
Q Consensus 152 l~~~~~~~~~~~v~~L~s~Q~--~dG-Gf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~gr 228 (358)
.|.. ..+++++.|.+... .++ +.. +...+....|.+|+.+|...+. .....++++||.++|..+|||..
T Consensus 1016 ~g~~---~~~~~l~~L~~~~~~~~~~~~~~--w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s- 1087 (1325)
T 2pn5_A 1016 NGHT---MKEEALNKLIDMSFIDADKNERF--WNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS- 1087 (1325)
T ss_dssp HTCT---THHHHHHHHHHTCEEETTTTEEE--CCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-
T ss_pred cCCc---hHHHHHHHHHhhhhhccCCCccc--CCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-
Confidence 6652 35667777776532 221 111 1222456667777777666553 34567889999999999999963
Q ss_pred CCCCCChhHHHHHHHHHHH
Q psy15438 229 PEKLPDVCYSWWVLASLHM 247 (358)
Q Consensus 229 ~~k~~D~cys~w~~a~L~l 247 (358)
+-.|.|++-+|..
T Consensus 1088 ------Tq~T~~aL~AL~~ 1100 (1325)
T 2pn5_A 1088 ------TQDTFVGLKALTK 1100 (1325)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHH
Confidence 3456666555543
No 30
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.45 E-value=3.3e-06 Score=94.90 Aligned_cols=217 Identities=8% Similarity=0.004 Sum_probs=132.2
Q ss_pred HHHHHhhcCCCCcccccc----ccchHHHHHHHHHHHHHhCCCC---CCChHHHHHHHHhcCCCCCcccccC--------
Q psy15438 21 EYIKKYSDNKEDYEYCMS----EYLRMSGMYWGITTLSLLDQLD---DMPQDTIFDFITQCIHPCGGVSASI-------- 85 (358)
Q Consensus 21 ~yl~~~~~~~~~~~~~~~----~~~~~~~~y~~l~~L~lL~~~~---~~~~~~~i~~i~~~q~~dGGF~~~~-------- 85 (358)
+.+...+...+.++++.. +....|+|-+++..|..+...- ....+++++||.+.|++||+|....
T Consensus 990 ~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~ 1069 (1451)
T 4acq_A 990 QRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIK 1069 (1451)
T ss_dssp HHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGC
T ss_pred HHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhc
Confidence 334444544444444432 3578899999999999988532 2235789999999999999997421
Q ss_pred -CCCCchhHHHHHHHHHHHhccc-CCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCChhcHHHH
Q psy15438 86 -SHDPHILYTLSAVQIACLINRE-HELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKA 163 (358)
Q Consensus 86 -~~~~~~~~Ty~Al~~L~ll~~~-~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~~~~~~~ 163 (358)
|.+.++..|.+++.+|...+.. ....++++++||.+.... +.. .....+......+..+|++.|. ....+.+
T Consensus 1070 gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~---~~~-~~~~~~~y~~AllAyAlal~g~--~~~~~~~ 1143 (1451)
T 4acq_A 1070 GGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKT---AQE-GDHGSHVYTKALLAYAFALAGN--QDKRKEV 1143 (1451)
T ss_dssp CSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHH---HTS-SCSSSTHHHHHHHHHHHHHHTC--HHHHHHH
T ss_pred CCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh---ccc-ccccCChHHHHHHHHHHHhcCC--hhHHHHH
Confidence 1235677787788887766532 122467899999865211 000 0011223333334445667775 3334556
Q ss_pred HHHHHhcccCCCC---CCCCCC-------------CCCcccHHHHHHHHHHhcccC----ChhcHHHHHHHHHhcCCCCC
Q psy15438 164 VEFILSCCNFDGG---FGSRPG-------------SESHAGLTYCCVGFLSITGHL----HEIDADKLAWWLAERQLPSG 223 (358)
Q Consensus 164 v~~L~s~Q~~dGG---f~~~pg-------------~esh~~~T~calasL~llg~~----~~~~~~~~~~wL~~~Q~~~G 223 (358)
++-|.+....+|| |+.... ....+..|.+||.+|..++.. +.....+.++||.+.|+..|
T Consensus 1144 l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~G 1223 (1451)
T 4acq_A 1144 LKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQG 1223 (1451)
T ss_dssp HHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTS
T ss_pred HHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCC
Confidence 7777766655666 432210 113456788888888777532 22346678999999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHH
Q psy15438 224 GLNGRPEKLPDVCYSWWVLASLHM 247 (358)
Q Consensus 224 Gf~gr~~k~~D~cys~w~~a~L~l 247 (358)
||..- .|+.....+++-.+.
T Consensus 1224 gf~ST----QdTv~aL~ALa~Y~~ 1243 (1451)
T 4acq_A 1224 GFSST----QDTVVALHALSKYGA 1243 (1451)
T ss_dssp CCSSH----HHHHHHHHHHHHHHH
T ss_pred CcccH----HHHHHHHHHHHHHHH
Confidence 99753 366665555554444
No 31
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.39 E-value=3.7e-06 Score=95.96 Aligned_cols=228 Identities=14% Similarity=0.044 Sum_probs=134.0
Q ss_pred CccccccccchHHHHHHHHHHHHHhCCC---CCC---ChHHHHHHH-------HhcCCCCCcccccCCCCCchhHHHHHH
Q psy15438 32 DYEYCMSEYLRMSGMYWGITTLSLLDQL---DDM---PQDTIFDFI-------TQCIHPCGGVSASISHDPHILYTLSAV 98 (358)
Q Consensus 32 ~~~~~~~~~~~~~~~y~~l~~L~lL~~~---~~~---~~~~~i~~i-------~~~q~~dGGF~~~~~~~~~~~~Ty~Al 98 (358)
|++...+..+++....+++.-|...+.. ... .+++++++| ++.|++||||+...+..++.+-|.+++
T Consensus 1004 PyGC~EQ~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~ 1083 (1676)
T 3cu7_A 1004 PKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFAL 1083 (1676)
T ss_dssp CSCSSHHHHTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHH
T ss_pred CCCcHHHHHHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHH
Confidence 4444444445655556666666655431 111 345666664 467899999999877778899998899
Q ss_pred HHHHHhcccCCC---ChHHHHHHHHh-cCCCCCCccccc--------CC------CcccchhHHHHHHHHHhCCC-----
Q psy15438 99 QIACLINREHEL---PVDKIVAYVSK-LQQPDGSFFGDM--------YG------EVDTRFSFCAVACLSLLGKL----- 155 (358)
Q Consensus 99 ~~L~ll~~~~~~---~~~~~~~~l~s-~Q~~dGgf~~~~--------~~------esd~~~ty~al~~l~ll~~~----- 155 (358)
..|........+ ...++++||.+ .|.+||.|.... ++ ++++..|..++.+|...+..
T Consensus 1084 ~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~ 1163 (1676)
T 3cu7_A 1084 RVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVK 1163 (1676)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcc
Confidence 988887643233 35688999999 999999996421 11 12344444445444433321
Q ss_pred ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHH-HHHHHHHHhcccCChhcHHHHHHHHHhcCCCCCc-----ccCCC
Q psy15438 156 DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLT-YCCVGFLSITGHLHEIDADKLAWWLAERQLPSGG-----LNGRP 229 (358)
Q Consensus 156 ~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T-~calasL~llg~~~~~~~~~~~~wL~~~Q~~~GG-----f~gr~ 229 (358)
....+.++++||.+.... + .+. |+ .-...+|++.|.... ..+++++.|.+....+|+ +-..+
T Consensus 1164 ~~~~i~~a~~yL~~~~~~---~-------~~~-y~~A~lA~Al~l~g~~~~-~a~~~l~~L~~~a~~~~~~~~~~~w~~~ 1231 (1676)
T 3cu7_A 1164 IDTALIKADNFLLENTLP---A-------QST-FTLAISAYALSLGDKTHP-QFRSIVSALKREALVKGNPPIYRFWKDN 1231 (1676)
T ss_dssp HHHHHHHHHHHHHHHHSS---C-------SCH-HHHHHHHHHHTTSCTTCH-HHHHHHHHHHHHCEEETTTTSEEECCSC
T ss_pred cHHHHHHHHHHHHHhhhc---c-------CCH-HHHHHHHHHHHhcCCchh-hHHHHHHHHHhhhhhccCCccccCCCCC
Confidence 123467889999775321 1 111 22 222334566665431 256667777765543332 21122
Q ss_pred CC---------C--CChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 230 EK---------L--PDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 230 ~k---------~--~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
.+ . .|+.-+-|++.++...+. ......+.+||++.|+. .|||
T Consensus 1232 ~~~~~~~~~~~~~~~~ve~tayaLlall~~~~--~~~~~~iv~wL~~qr~~------~Gg~ 1284 (1676)
T 3cu7_A 1232 LQHKDSSVPNTGTARMVETTAYALLTSLNLKD--INYVNPVIKWLSEEQRY------GGGF 1284 (1676)
T ss_dssp SSCCSSCCCSCCCHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCS------SSCC
T ss_pred CCCccccccCCCccchHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhccCC------CCCc
Confidence 11 1 255556666666655553 23467889999998877 6999
No 32
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.23 E-value=6.2e-06 Score=80.27 Aligned_cols=134 Identities=12% Similarity=0.021 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcccC--C---CChHHHH--
Q psy15438 44 SGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREH--E---LPVDKIV-- 116 (358)
Q Consensus 44 ~~~y~~l~~L~lL~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~~~--~---~~~~~~~-- 116 (358)
...-|++.+|...+.. . +++.++.+...|+ +++|.. +...++.+|..|+.+|..+.+.. + ..+++++
T Consensus 137 Yq~sL~vLALC~~g~~--v-~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~ 210 (414)
T 2bb6_A 137 YQYSLGILALCVHQKR--V-HDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKR 210 (414)
T ss_dssp HHHHHHHHHHHHTTCC--C-CHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC--c-cHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Confidence 3455666666666642 2 4556666666554 456642 23357899988888888775421 1 1234445
Q ss_pred --HHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCCCh---hcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHH
Q psy15438 117 --AYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDA---INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTY 191 (358)
Q Consensus 117 --~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~~~---~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~ 191 (358)
++|.+.|++||+|+ +.++|--|+.+|...+.... .+..++++||++ |..||+|. ....|.
T Consensus 211 l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ata 275 (414)
T 2bb6_A 211 VQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMIS 275 (414)
T ss_dssp HHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHH
T ss_pred HHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHH
Confidence 88889999999997 46778888888887776322 378889999999 99999997 244666
Q ss_pred HHHHHHH
Q psy15438 192 CCVGFLS 198 (358)
Q Consensus 192 calasL~ 198 (358)
-++-+|.
T Consensus 276 Q~lpaL~ 282 (414)
T 2bb6_A 276 QLLPVLN 282 (414)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 6665554
No 33
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.22 E-value=9e-06 Score=78.78 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=98.3
Q ss_pred hHHHHHHHHhcCCCCCCcccccC--------------------------------------CCcccchhHHHHHHHHHhC
Q psy15438 112 VDKIVAYVSKLQQPDGSFFGDMY--------------------------------------GEVDTRFSFCAVACLSLLG 153 (358)
Q Consensus 112 ~~~~~~~l~s~Q~~dGgf~~~~~--------------------------------------~esd~~~ty~al~~l~ll~ 153 (358)
.+++.+.|.+-|.++|||..... +..|...|..++..|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 46789999999999999964210 0124456777777776543
Q ss_pred CC-----C---hhcHHHHHHHHHhcccCCCCCCCC-CCCC--------CcccHHHHHHHHHHhcccC-------------
Q psy15438 154 KL-----D---AINLSKAVEFILSCCNFDGGFGSR-PGSE--------SHAGLTYCCVGFLSITGHL------------- 203 (358)
Q Consensus 154 ~~-----~---~~~~~~~v~~L~s~Q~~dGGf~~~-pg~e--------sh~~~T~calasL~llg~~------------- 203 (358)
.. + ...++++++||++.|..||||+.. |... +| ..|--++..|..++..
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 21 1 235789999999999999999875 2221 11 1234455555555441
Q ss_pred -ChhcHHHHHHHHHhcCCC-CCcccCC--------CCC--------CCCh--hHHHHHHHHHHHhCCCCC---CCHHHHH
Q psy15438 204 -HEIDADKLAWWLAERQLP-SGGLNGR--------PEK--------LPDV--CYSWWVLASLHMLGRGTW---INSAALR 260 (358)
Q Consensus 204 -~~~~~~~~~~wL~~~Q~~-~GGf~gr--------~~k--------~~D~--cys~w~~a~L~ll~~~~~---~d~~~l~ 260 (358)
....++|+++||+..|.+ +|.+- | +.. ++-+ ..|.|++..|.-+..... ...++.+
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av 320 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 112478899999999999 89887 4 211 1112 244455444433332211 0268899
Q ss_pred HHHHHhcCCCCCccccCCc
Q psy15438 261 KFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 261 ~~ll~~Q~~~~~~~~~GGf 279 (358)
+||.++|++ +|+.
T Consensus 321 ~WL~s~Q~~------dg~w 333 (408)
T 1r76_A 321 AWLNTSVIR------DRAW 333 (408)
T ss_dssp HHHHHSCCC------C---
T ss_pred HHHHHhhcC------CCce
Confidence 999999998 5776
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.04 E-value=1.7e-05 Score=77.17 Aligned_cols=118 Identities=17% Similarity=0.054 Sum_probs=78.3
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCCC-----ChhcHHHHH----HHH
Q psy15438 97 AVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKL-----DAINLSKAV----EFI 167 (358)
Q Consensus 97 Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~~-----~~~~~~~~v----~~L 167 (358)
++.+|++.-.-.++ .++.++.+...|. +++|.. ++..++-.+..|+.+|..++.- ....+++++ ++|
T Consensus 140 sL~vLALC~~g~~v-~~~~v~~Ll~~~~-~~~~~~--g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l 215 (414)
T 2bb6_A 140 SLGILALCVHQKRV-HDSVVGKLLYAVE-HKPHLL--QDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKI 215 (414)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHHH-SSSCSC--CTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCc-cHHHHHHHHHHhh-ccCcCC--CCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Confidence 55556554322233 3345555555554 445541 2234676777777777766431 123355555 888
Q ss_pred HhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChh---cHHHHHHHHHhcCCCCCccc
Q psy15438 168 LSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI---DADKLAWWLAERQLPSGGLN 226 (358)
Q Consensus 168 ~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~---~~~~~~~wL~~~Q~~~GGf~ 226 (358)
++.|++||+|| +..+|..|+.+|...+..+.. +..++++||++ |.++|+|.
T Consensus 216 ~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 216 LKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 89999999997 355699999999998875432 66779999998 99999997
No 35
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.97 E-value=0.00075 Score=71.16 Aligned_cols=202 Identities=14% Similarity=0.087 Sum_probs=110.9
Q ss_pred chHHHHHHHHHh-------hcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHhcCCCCCccccc
Q psy15438 15 LGTKHAEYIKKY-------SDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQCIHPCGGVSAS 84 (358)
Q Consensus 15 ~~~~h~~yl~~~-------~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~~q~~dGGF~~~ 84 (358)
.+++.++||.+- +...+.++++.......|+|-|++.+|..+.....++ ..++++||.+.|.++|.|...
T Consensus 362 ~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~ 441 (767)
T 4fxk_B 362 TKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP 441 (767)
T ss_dssp HHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhc
Confidence 456666776542 2333444556666678999999999999998654333 456889999999999998642
Q ss_pred C--------C----CCCchhHHHHHHHHHHHhccc--CC----------CChHHHHHHHHhcCCCCCCcccccCCCcccc
Q psy15438 85 I--------S----HDPHILYTLSAVQIACLINRE--HE----------LPVDKIVAYVSKLQQPDGSFFGDMYGEVDTR 140 (358)
Q Consensus 85 ~--------~----~~~~~~~Ty~Al~~L~ll~~~--~~----------~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~ 140 (358)
- + .+.++..|.+.+.+|...... .. ..+.++++||......+ ..+..
T Consensus 442 g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~---------~~~~y 512 (767)
T 4fxk_B 442 CPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG---------LLGAH 512 (767)
T ss_dssp SCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC---------CCCHH
T ss_pred chhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc---------cCCHH
Confidence 1 1 123455665555555432211 10 12456788887654221 11121
Q ss_pred hhHHHHHHHHHhCCCChhcHHHHHHHHHhcccCCCC--CCCCC-CCC----------------------CcccHHHHHHH
Q psy15438 141 FSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGG--FGSRP-GSE----------------------SHAGLTYCCVG 195 (358)
Q Consensus 141 ~ty~al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGG--f~~~p-g~e----------------------sh~~~T~cala 195 (358)
....+..+|.+.+.. ....+.+.+-|.+.-..+|+ +...+ +.. ..+..|.+|+.
T Consensus 513 ~~Al~ayaL~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLl 591 (767)
T 4fxk_B 513 AAAITAYALSLTKAP-VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALL 591 (767)
T ss_dssp HHHHHHHHHHHHTCT-THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHH
Confidence 111122345555642 23344455555554433332 21111 100 01234555555
Q ss_pred HHHhcccCChhcHHHHHHHHHhcCCCCCcccC
Q psy15438 196 FLSITGHLHEIDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 196 sL~llg~~~~~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
++..... +....+++++||.+.|+..|||..
T Consensus 592 a~l~~~~-~~~~a~~iv~WL~~Qr~~~Ggf~S 622 (767)
T 4fxk_B 592 HLLLHEG-KAEMADQASAWLTRQGSFQGGFRS 622 (767)
T ss_dssp HHHHHTS-SCHHHHHHHHHHHHTCCTTSSCSS
T ss_pred HHHhcCC-chhHHHHHHHHHHHhhcCCCCCcC
Confidence 5433322 233467889999999999999974
No 36
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.93 E-value=1.3e-06 Score=98.89 Aligned_cols=230 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCC---CCChHHHHHHH-------HhcCCCCCcccccCCC
Q psy15438 18 KHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLD---DMPQDTIFDFI-------TQCIHPCGGVSASISH 87 (358)
Q Consensus 18 ~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~---~~~~~~~i~~i-------~~~q~~dGGF~~~~~~ 87 (358)
+.+++|.+. |++...+.-+++.-..+++.-|...+.++ ...++++.++| ++.|++||||+...+.
T Consensus 981 ~~L~~Ll~~-----PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~ 1055 (1642)
T 3prx_B 981 SKLNHLIIT-----PSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTNR 1055 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHhc-----CCCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCCC
Confidence 445555532 66765566667666777777776665433 23345566655 4578999999988766
Q ss_pred CCchhHHHHHHHHHHHhcc----cCCCChHHHHHHHHh-cCCCCCCccccc--------CC----CcccchhHHHHHHHH
Q psy15438 88 DPHILYTLSAVQIACLINR----EHELPVDKIVAYVSK-LQQPDGSFFGDM--------YG----EVDTRFSFCAVACLS 150 (358)
Q Consensus 88 ~~~~~~Ty~Al~~L~ll~~----~~~~~~~~~~~~l~s-~Q~~dGgf~~~~--------~~----esd~~~ty~al~~l~ 150 (358)
+++.+-|.+++.+|..... .+.-...++++||.+ .|++||+|.... +| +.++..|..++.+|.
T Consensus 1056 ~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~ 1135 (1642)
T 3prx_B 1056 ASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALL 1135 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHH
Confidence 6788888888888877654 333446789999998 899999996521 22 334544433333332
Q ss_pred HhCCC-------ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHH--HHHhcccCChhcHHHHHHHHHhcCCC
Q psy15438 151 LLGKL-------DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVG--FLSITGHLHEIDADKLAWWLAERQLP 221 (358)
Q Consensus 151 ll~~~-------~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~cala--sL~llg~~~~~~~~~~~~wL~~~Q~~ 221 (358)
-.+.. ....+++++.||.+.... . ..| || -|+. ||++.+... .+.+.. |...
T Consensus 1136 e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~---~-~~~-------Y~-~Ai~aYAl~l~~~~~---~~~l~~-l~~~--- 1196 (1642)
T 3prx_B 1136 ESKTICNDYVNSLDSSIKKATNYLLKKYEK---L-QRP-------YT-TALTAYALAAADQLN---DDRVLM-AAST--- 1196 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccccccccccchHHHHHHHHHHHHhhhc---C-CCH-------HH-HHHHHHHHHhcCCch---HHHHHH-HHhc---
Confidence 22211 123578899999764221 0 111 11 1222 344455431 111111 1111
Q ss_pred CCcccCCCC-CCCChhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCCCccccCCc
Q psy15438 222 SGGLNGRPE-KLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVF 279 (358)
Q Consensus 222 ~GGf~gr~~-k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~ll~~Q~~~~~~~~~GGf 279 (358)
+.-+-.+++ ...++.-|-|++-++..++. ......+.+||.+.|+. .|||
T Consensus 1197 ~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~--~~~a~~iv~WL~~qr~~------~Ggf 1247 (1642)
T 3prx_B 1197 GRDHWEEYNAHTHNIEGTSYALLALLKMKK--FDQTGPIVRWLTDQNFY------GETY 1247 (1642)
T ss_dssp -----------------------------------------------------------
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHhccC------CCcc
Confidence 111212222 24577777777766655543 34578999999998887 7999
No 37
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.89 E-value=0.00037 Score=79.53 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=114.6
Q ss_pred hHHHHHHHHH-------hhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHh-cCCCCCccccc
Q psy15438 16 GTKHAEYIKK-------YSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQ-CIHPCGGVSAS 84 (358)
Q Consensus 16 ~~~h~~yl~~-------~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~-~q~~dGGF~~~ 84 (358)
+++.+++|.. .+...+.++++.......|+|-|++..|..+.+.-.++ .+++++||.+ .|.++|.|...
T Consensus 1041 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1041 RQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence 3455556543 23344445556656678999999999999998643333 4678999995 99999998532
Q ss_pred C--------C-----CCCchhHHHHHHHHHHHhccc-----CCC--ChHHHHHHHHhcCCCCCCcccccCCCcccchhHH
Q psy15438 85 I--------S-----HDPHILYTLSAVQIACLINRE-----HEL--PVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFC 144 (358)
Q Consensus 85 ~--------~-----~~~~~~~Ty~Al~~L~ll~~~-----~~~--~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~ 144 (358)
. + .++++..|..++.+|..-+.. +.. .++++++||.+....- .+......
T Consensus 1121 ~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~----------~~~y~~A~ 1190 (1661)
T 2b39_A 1121 GPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYREL----------RRPYTVAI 1190 (1661)
T ss_dssp SCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTTC----------CSHHHHHH
T ss_pred cceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhcc----------CCHHHHHH
Confidence 1 1 122566665556555543322 111 3457889997753220 11111112
Q ss_pred HHHHHHHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCC-CCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCCCC
Q psy15438 145 AVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGS-ESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSG 223 (358)
Q Consensus 145 al~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~-esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~~G 223 (358)
+..+|.+.|.. .+++++.|.+... +|.+...++. ..+...|.+|+.+|...+.. ....++++||.+.|+..|
T Consensus 1191 layAL~l~g~~----a~~~l~~L~~~~~-~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~~~g 1263 (1661)
T 2b39_A 1191 AAYALALLGKL----EGDRLTKFLNTAK-EKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRYYGG 1263 (1661)
T ss_dssp HHHHHHHTTCC----CHHHHHHHHHHSB-TTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTBTT
T ss_pred HHHHHHHcCCc----HHHHHHHHHhhcc-CCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCC
Confidence 22345566653 3556677766543 3433222221 12344566777776666543 235678899999988889
Q ss_pred cccC
Q psy15438 224 GLNG 227 (358)
Q Consensus 224 Gf~g 227 (358)
||..
T Consensus 1264 g~~S 1267 (1661)
T 2b39_A 1264 GYGS 1267 (1661)
T ss_dssp BBCS
T ss_pred Cccc
Confidence 9975
No 38
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.82 E-value=1.5e-05 Score=75.09 Aligned_cols=155 Identities=13% Similarity=0.072 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCCCCCccccc-------------CCCcccchhHHHHHHHHHhCCC--C---hhcHHHHHHHHHhcccCCC
Q psy15438 114 KIVAYVSKLQQPDGSFFGDM-------------YGEVDTRFSFCAVACLSLLGKL--D---AINLSKAVEFILSCCNFDG 175 (358)
Q Consensus 114 ~~~~~l~s~Q~~dGgf~~~~-------------~~esd~~~ty~al~~l~ll~~~--~---~~~~~~~v~~L~s~Q~~dG 175 (358)
.+.+-|.+-|.++|||.... ....|...|..++..|.-+... + ...++++++||++.|..+|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 35778999999999997631 1124667788887777554221 1 2457899999999999999
Q ss_pred CCCCC-CCCC--------CcccHHHHHHHHHHhccc----C------------ChhcHHHHHHHHHhcCCCCCcccCCCC
Q psy15438 176 GFGSR-PGSE--------SHAGLTYCCVGFLSITGH----L------------HEIDADKLAWWLAERQLPSGGLNGRPE 230 (358)
Q Consensus 176 Gf~~~-pg~e--------sh~~~T~calasL~llg~----~------------~~~~~~~~~~wL~~~Q~~~GGf~gr~~ 230 (358)
||+.. |... +| ..|--+|..|..++. . ....++|+++||+..|.++||+-+|=+
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 99875 3221 12 234556666666542 1 112478899999999999998877632
Q ss_pred CC----------------CChhHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHhcCC
Q psy15438 231 KL----------------PDVCYSWWVLASLHMLGRGTWI----NSAALRKFILASQVR 269 (358)
Q Consensus 231 k~----------------~D~cys~w~~a~L~ll~~~~~~----d~~~l~~~ll~~Q~~ 269 (358)
-. +-+|-.=-+.....+++..... ..++.++||.++|++
T Consensus 194 ~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 194 AQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp SEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 21 1222221222223344543210 157889999999993
No 39
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.74 E-value=0.00087 Score=76.51 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=118.4
Q ss_pred chHHHHHHHHH-------hhcCCCCccccccccchHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHh-cCCCCCcccc
Q psy15438 15 LGTKHAEYIKK-------YSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMP---QDTIFDFITQ-CIHPCGGVSA 83 (358)
Q Consensus 15 ~~~~h~~yl~~-------~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~~~~---~~~~i~~i~~-~q~~dGGF~~ 83 (358)
.+++.+++|.. .+...+.++++.......|+|-|++..|..+.+.-.++ .+++++||.+ .|.++|.|..
T Consensus 1041 ~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1041 EKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 34566666543 23333445556566678999999999999988643333 4678999999 9999999853
Q ss_pred cCC--------C------CCchhHHHHHHHHHHHhcccC-----CCChHHHHHHHHhcCCCCCCcccccCCCcccchhHH
Q psy15438 84 SIS--------H------DPHILYTLSAVQIACLINREH-----ELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFC 144 (358)
Q Consensus 84 ~~~--------~------~~~~~~Ty~Al~~L~ll~~~~-----~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~ 144 (358)
... . ++++..|.+++.+|..-+... .....++++||.+.... ....|.
T Consensus 1121 ~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~-------------~~~~y~ 1187 (1676)
T 3cu7_A 1121 NSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP-------------AQSTFT 1187 (1676)
T ss_dssp CSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS-------------CSCHHH
T ss_pred CccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc-------------cCCHHH
Confidence 210 0 014445544555554332220 11345788999765321 111232
Q ss_pred -HH--HHHHHhCCCChhcHHHHHHHHHhcccCCCC-----CCCCCC------C---C--CcccHHHHHHHHHHhcccCCh
Q psy15438 145 -AV--ACLSLLGKLDAINLSKAVEFILSCCNFDGG-----FGSRPG------S---E--SHAGLTYCCVGFLSITGHLHE 205 (358)
Q Consensus 145 -al--~~l~ll~~~~~~~~~~~v~~L~s~Q~~dGG-----f~~~pg------~---e--sh~~~T~calasL~llg~~~~ 205 (358)
|+ .+|.+.|... ...+++++.|.+....+|+ +...+. + . .++..|.+|+.+|...+ +.
T Consensus 1188 ~A~lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~ 1264 (1676)
T 3cu7_A 1188 LAISAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DI 1264 (1676)
T ss_dssp HHHHHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--Ch
Confidence 22 2344445422 1256677777766553333 222221 0 1 12344566666665554 33
Q ss_pred hcHHHHHHHHHhcCCCCCcccCCCCCCCChhHHHHHHHH
Q psy15438 206 IDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLAS 244 (358)
Q Consensus 206 ~~~~~~~~wL~~~Q~~~GGf~gr~~k~~D~cys~w~~a~ 244 (358)
....++++||.+.|+..|||..- .|+.....+++.
T Consensus 1265 ~~~~~iv~wL~~qr~~~Gg~~ST----QdT~~Al~AL~~ 1299 (1676)
T 3cu7_A 1265 NYVNPVIKWLSEEQRYGGGFYST----QDTINAIEGLTE 1299 (1676)
T ss_dssp HHHHHHHHHHHHHSCSSSCCSTT----TTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCcccc----HHHHHHHHHHHH
Confidence 35678899999988888999753 455544444433
No 40
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.56 E-value=0.0011 Score=70.10 Aligned_cols=237 Identities=17% Similarity=0.133 Sum_probs=134.8
Q ss_pred cchHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHhcCCCCCcccccCCC--CCchhHHHHHHHHHHHhcccCCCChHH
Q psy15438 40 YLRMSGMYWGITTLSLLDQL---DDMPQDTIFDFITQCIHPCGGVSASISH--DPHILYTLSAVQIACLINREHELPVDK 114 (358)
Q Consensus 40 ~~~~~~~y~~l~~L~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~~~~--~~~~~~Ty~Al~~L~ll~~~~~~~~~~ 114 (358)
+..+..|-| +++.... ....-.+.++||+..|.+||+|+..... .-.+.+|.+||.+|.--+. ....+++
T Consensus 80 S~S~YDTAW----VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~ 154 (817)
T 3sdr_A 80 TPSAYDTAW----VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-GDLQVEQ 154 (817)
T ss_dssp CCCHHHHHH----HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-CHHHHHH
T ss_pred ccCHHHhhH----HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHH
Confidence 345567888 3344322 2233478999999999999999864321 1257899888888876432 1124678
Q ss_pred HHHHHHhcCCCC----------CCccc-ccC--------C-Ccccchh-HHHHHHHHH--hCCCC--------------h
Q psy15438 115 IVAYVSKLQQPD----------GSFFG-DMY--------G-EVDTRFS-FCAVACLSL--LGKLD--------------A 157 (358)
Q Consensus 115 ~~~~l~s~Q~~d----------Ggf~~-~~~--------~-esd~~~t-y~al~~l~l--l~~~~--------------~ 157 (358)
++.||.+.-..- =||.- .|. + +-..... ...+..+.- |.++. .
T Consensus 155 Gl~fl~~nl~~~~~~~~~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~~p~~llhsl 234 (817)
T 3sdr_A 155 GIEFIKSNLELVKDETDQDSLVTDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAKLSREEIYAVPSPLLYSL 234 (817)
T ss_dssp HHHHHHHHHTTCCSGGGSCSCCTTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHTCCSGGGGTSCCGGGGGG
T ss_pred HHHHHHHHHHHhhcccccCCCCcceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhCCChhhccCCCchHHHHH
Confidence 888888753221 02210 000 0 0000000 001111100 00000 0
Q ss_pred hcHHHHHHH--HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCCC-CCcccCCCCC-CC
Q psy15438 158 INLSKAVEF--ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEK-LP 233 (358)
Q Consensus 158 ~~~~~~v~~--L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~~-~GGf~gr~~k-~~ 233 (358)
+.....++| +...|..||+|..+| ..|.+++.. .+ | +++.+||...+.. +| +.|.- +.
T Consensus 235 E~l~~~~d~~~~~~~q~~~GS~~~SP------saTAa~l~~---~~-----d-~~~~~YL~~~~~~~~g---~VP~~yP~ 296 (817)
T 3sdr_A 235 EGIQDIVEWERIMEVQSQDGSFLSSP------ASTACVFMH---TG-----D-AKCLEFLNSVMIKFGN---FVPCLYPV 296 (817)
T ss_dssp GGCTTTCCTTTGGGGCCTTSCBTTBH------HHHHHHHHH---HC-----C-HHHHHHHHHHHHHHSS---CCCSSSCC
T ss_pred HhccccccHHHHHhccCCCCCcccCH------HHHHHHHHh---CC-----C-hhHHHHHHHHHHhcCC---CCCccCCC
Confidence 011122455 677788889988765 356665432 11 2 5678888765443 34 35554 56
Q ss_pred ChhHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHhcCCCCCccccCCccCCCCCCccccccccccccccccccccccccc
Q psy15438 234 DVCYSWWVLASLHMLGRGTWI--NSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCI 311 (358)
Q Consensus 234 D~cys~w~~a~L~ll~~~~~~--d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (358)
|....-|.+-+|.-||-...+ ..+.+.+.|.++... .|+.
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~-------~gi~------------------------------- 338 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNE-------RGIG------------------------------- 338 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCT-------TCCC-------------------------------
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhh-------cccc-------------------------------
Confidence 888899999999999964322 135666677665443 2341
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCC
Q psy15438 312 SDRPLDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 312 ~~~p~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
..+++..+|++.|-.+.-.|...|++
T Consensus 339 ~~~~~~~~Dl~~tAl~FRlLR~~Gy~ 364 (817)
T 3sdr_A 339 WGRLNPIADLETTALGFRLLRLHRYN 364 (817)
T ss_dssp SSTTCSSCCHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCC
Confidence 12344467999999999999999973
No 41
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.51 E-value=0.0011 Score=69.74 Aligned_cols=261 Identities=15% Similarity=0.129 Sum_probs=143.2
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHh--CCCCCCChHHHHHHHHhcCCCCCcccccCCC--CCc
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLL--DQLDDMPQDTIFDFITQCIHPCGGVSASISH--DPH 90 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL--~~~~~~~~~~~i~~i~~~q~~dGGF~~~~~~--~~~ 90 (358)
.++..++-|++.+... +.+ .-+..+..|-| |+-.--+ +......-.+.++||+..|.+||+|+..... .-.
T Consensus 9 ~~~~~~~~i~~~~~~~-~~g---~~S~S~YDTAW-Vamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 83 (764)
T 3p5p_A 9 RADELVVKIKDMFNAL-GDG---DISPSAYDTAW-VARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDR 83 (764)
T ss_dssp HHHHHHHHHHHHHHTC-SSC---CCCCCHHHHHH-HHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCC---cccCcHHHHHH-HHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence 3455677777665532 111 11344567888 2222122 2111123568999999999999999864321 125
Q ss_pred hhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCC-CC------Cccc-ccC--------C-Ccccchh-HHHHHHH---
Q psy15438 91 ILYTLSAVQIACLINREHELPVDKIVAYVSKLQQP-DG------SFFG-DMY--------G-EVDTRFS-FCAVACL--- 149 (358)
Q Consensus 91 ~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~-dG------gf~~-~~~--------~-esd~~~t-y~al~~l--- 149 (358)
+.+|.+||.+|.--+. ....+++++.||.+.-.- |. ||.- .|. + +-..... ...+..+
T Consensus 84 ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~ 162 (764)
T 3p5p_A 84 LLNTTNSVIALSVWKT-GHSQVQQGAEFIAENLRLLNEEDELSPDFQIIFPALLQKAKALGINLPYDLPFIKYLSTTREA 162 (764)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTTCCTTSCCCTTHHHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhhcCCCCCCceeeeeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHH
Confidence 7899888888766432 113467888898765311 11 2210 000 0 0000000 0011000
Q ss_pred --HHh-----CCCC-----hhcHHHHHHH--HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHHHHHHH
Q psy15438 150 --SLL-----GKLD-----AINLSKAVEF--ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWL 215 (358)
Q Consensus 150 --~ll-----~~~~-----~~~~~~~v~~--L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~~~~wL 215 (358)
..+ +... .+.....++| +...|..||+|..+| ..|.+++.. .+ | +++.+||
T Consensus 163 kL~~~~~~~~~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~~SP------saTAa~l~~---~~-----d-~~~~~YL 227 (764)
T 3p5p_A 163 RLTDVSAAADNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLSSP------ASTACVLMN---TG-----D-EKCFTFL 227 (764)
T ss_dssp HHHHHHTSTTSSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBTTBH------HHHHHHHHH---HC-----C-HHHHHHH
T ss_pred HHhcCchhhcCCCchHHHHHHhccccccHHHHHhccCCCCCcccCh------HHHHHHHHh---CC-----C-hhHHHHH
Confidence 000 0000 0011122455 667787889888765 356666543 11 2 5678888
Q ss_pred HhcCCC-CCcccCCCCC-CCChhHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHhcCCCCCccccCCccCCCCCCccccc
Q psy15438 216 AERQLP-SGGLNGRPEK-LPDVCYSWWVLASLHMLGRGTWI--NSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYV 291 (358)
Q Consensus 216 ~~~Q~~-~GGf~gr~~k-~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~~~~~ 291 (358)
...+.. +| +.|.- +.|+...-|.+-+|.-||-...+ ..+.+.+.|.++... .|+.
T Consensus 228 ~~~~~~~~g---~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~-------~gi~----------- 286 (764)
T 3p5p_A 228 NNLLDKFGG---CVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSE-------RGIG----------- 286 (764)
T ss_dssp HHHHHHHTS---CCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCT-------TCCC-----------
T ss_pred HHHHHhcCC---CCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhh-------cccc-----------
Confidence 765433 34 35554 56888899999999999964322 134566677665443 2341
Q ss_pred ccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCC
Q psy15438 292 DYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
..+++..+|++.|-.+.-.|...|++
T Consensus 287 --------------------~~~~~~~~Dl~~tAl~FRlLR~~Gy~ 312 (764)
T 3p5p_A 287 --------------------WGRDSLVPDLNTTALGLRTLRMHGYN 312 (764)
T ss_dssp --------------------SSTTCSSCCHHHHHHHHHHHHHTTCC
T ss_pred --------------------cccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 12344457999999999999999973
No 42
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.46 E-value=0.0002 Score=69.33 Aligned_cols=113 Identities=16% Similarity=0.020 Sum_probs=79.8
Q ss_pred hHHHHHHHHhcCCCCCcccccCCCCCchhHHHHHHHHHHHhcc---cC--C-------CChHHHHHHHHhcCCCCCCccc
Q psy15438 64 QDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINR---EH--E-------LPVDKIVAYVSKLQQPDGSFFG 131 (358)
Q Consensus 64 ~~~~i~~i~~~q~~dGGF~~~~~~~~~~~~Ty~Al~~L~ll~~---~~--~-------~~~~~~~~~l~s~Q~~dGgf~~ 131 (358)
+++.++-+...|+.+|+ .-++..+..|+.+|..+.. .. . ..+++++++|.+.|++||+|+
T Consensus 132 ~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG- 203 (399)
T 2pmv_A 132 TLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG- 203 (399)
T ss_dssp HHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred CHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence 55667767666666632 2357788667777766654 11 1 124678889999999999997
Q ss_pred ccCCCcccchhHHHHHHHHHhCCC--ChhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHH
Q psy15438 132 DMYGEVDTRFSFCAVACLSLLGKL--DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLS 198 (358)
Q Consensus 132 ~~~~esd~~~ty~al~~l~ll~~~--~~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~ 198 (358)
++++|--|+.+|...+.. ...+..++++||++ |..||+|+ +...|.-++-+|.
T Consensus 204 ------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL~ 258 (399)
T 2pmv_A 204 ------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSLK 258 (399)
T ss_dssp ------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHHT
T ss_pred ------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHhc
Confidence 577787788888887752 23389999999999 99999996 3455666665554
No 43
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.24 E-value=0.0067 Score=63.86 Aligned_cols=257 Identities=17% Similarity=0.144 Sum_probs=138.8
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCC---CCCChHHHHHHHHhcCCCCCcccccCCCC--C
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL---DDMPQDTIFDFITQCIHPCGGVSASISHD--P 89 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~---~~~~~~~~i~~i~~~q~~dGGF~~~~~~~--~ 89 (358)
.++..++-|++.+... ..+ .-+..+..|-| +++.... ....-.+.++||+..|.+||+|+...... -
T Consensus 32 ~~~~~~~~i~~~~~~~-~~g---~~S~S~YDTAW----Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d 103 (785)
T 3s9v_A 32 RIETLISEIKNMFRCM-GYG---ETNPSAYDTAW----VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYD 103 (785)
T ss_dssp HHHHHHHHHHHHHHHC-SSC---CCCCCHHHHHH----HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHH
T ss_pred HHHHHHHHHHHHhhcC-CCC---cccCcHHHhhH----HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHH
Confidence 3444566666655322 111 11344567888 2333322 22233689999999999999998643221 2
Q ss_pred chhHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCC------CC---Cccc-cc--------CCCcccchhH---HHHHH
Q psy15438 90 HILYTLSAVQIACLINREHELPVDKIVAYVSKLQQP------DG---SFFG-DM--------YGEVDTRFSF---CAVAC 148 (358)
Q Consensus 90 ~~~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~------dG---gf~~-~~--------~~esd~~~ty---~al~~ 148 (358)
.+.+|.+||.+|.--+. ....+++++.||.+.-.. +- ||.- .| .| -+..+-. ..+..
T Consensus 104 ~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl~~~~~~~~~~~i~gfeiifP~ll~~a~~~g-l~~~~~~~~~~~l~~ 181 (785)
T 3s9v_A 104 RILATLACIITLTLWRT-GETQVQKGIEFFRTQAGKMEDEADSHRPSGFEIVFPAMLKEAKILG-LDLPYDLPFLKQIIE 181 (785)
T ss_dssp HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTTGGGSTTSCCCTTHHHHHHHHHHHHHHTT-CCCCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHHHHhhccCcCCCccceeeeHHHHHHHHHHcC-CCCCCCchhhHHHHH
Confidence 38899998888876432 112467888888765321 11 2211 00 00 0000000 00100
Q ss_pred HHH--hCCCCh--------------hcHHHHHHH--HHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHH
Q psy15438 149 LSL--LGKLDA--------------INLSKAVEF--ILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK 210 (358)
Q Consensus 149 l~l--l~~~~~--------------~~~~~~v~~--L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~ 210 (358)
+.- |.++.. +.....++| |+..|..||+|..+|- .|.+++.- .+ | ++
T Consensus 182 ~r~~kL~~~~~~~~~~~p~~llhslE~l~~~~d~~~v~~~q~~~GS~~~SPs------aTAa~l~~---~~-----d-~~ 246 (785)
T 3s9v_A 182 KREAKLKRIPTDVLYALPTTLLYSLEGLQEIVDWQKIMKLQSKDGSFLSSPA------STAAVFMR---TG-----N-KK 246 (785)
T ss_dssp HHHHHHTTSCHHHHHHSCCGGGGGGGGCTTTCCHHHHHTTCCTTSCBTTBHH------HHHHHHHH---HC-----C-HH
T ss_pred HHHHHHhCCChhhccCCcchHHHHHHhccccccHHHHHhccCCCCCcccCHH------HHHHHHHh---CC-----C-hh
Confidence 000 001000 000011222 4567888999987653 56665432 11 2 56
Q ss_pred HHHHHHhcCCCCCcccCCCCC-CCChhHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHhcCCCCCccccCCccCCCCCCc
Q psy15438 211 LAWWLAERQLPSGGLNGRPEK-LPDVCYSWWVLASLHMLGRGTWI--NSAALRKFILASQVRNTFYFEMGVFSDKIPVCG 287 (358)
Q Consensus 211 ~~~wL~~~Q~~~GGf~gr~~k-~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~ 287 (358)
+.+||...+...|| +.|.- +.|+...-|.+-+|.-||-...+ ..+.+.++|.++... .|+
T Consensus 247 ~~~YL~~~~~~~~g--~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~-------~gi-------- 309 (785)
T 3s9v_A 247 CLDFLNFVLKKFGN--HVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDE-------RGI-------- 309 (785)
T ss_dssp HHHHHHHHHHHHSS--CCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCT-------TCC--------
T ss_pred HHHHHHHHHHhcCC--CCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhh-------ccc--------
Confidence 78888765443222 45554 56888899999999999864322 134566666655443 234
Q ss_pred ccccccccccccccccccccccccCCCC-CCCCChHHHHHHHHHHHhcCCC
Q psy15438 288 VHYVDYCTQVRNRIEQGCSVRTCISDRP-LDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
.-.| +..+|++.|-.+.-.|...|++
T Consensus 310 ------------------------~~~~~~~~~Dl~~tAl~FRlLR~~Gy~ 336 (785)
T 3s9v_A 310 ------------------------GWARENPVPDIDDTAMGLRILRLHGYN 336 (785)
T ss_dssp ------------------------CSSTTCSSCCHHHHHHHHHHHHHTTCC
T ss_pred ------------------------cccccCCCCCHHHHHHHHHHHHhcCCC
Confidence 1112 2247999999999999999973
No 44
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.22 E-value=0.0011 Score=64.18 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=76.9
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHhcCCCCCCcccccCCCcccchhHHHHHHHHHhCC---CC---------hhcHHHH
Q psy15438 96 SAVQIACLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGK---LD---------AINLSKA 163 (358)
Q Consensus 96 ~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~al~~l~ll~~---~~---------~~~~~~~ 163 (358)
.|+.+|++.-.-.+ ..++.++-|...|+.||+ ..++..+..|+.+|.-+.. .. ...++++
T Consensus 117 ~sL~vLALC~~~~~-v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~ 188 (399)
T 2pmv_A 117 PSLAILALCQKNSE-ATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDI 188 (399)
T ss_dssp HHHHHHHHHHHCHH-HHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 35666665421111 244556666666666642 1245455566666655533 11 2346778
Q ss_pred HHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCC--hhcHHHHHHHHHhcCCCCCccc
Q psy15438 164 VEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLH--EIDADKLAWWLAERQLPSGGLN 226 (358)
Q Consensus 164 v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~--~~~~~~~~~wL~~~Q~~~GGf~ 226 (358)
+++|++.|++||+|| +..+|--|+.+|...+..+ ..+..++.+||+. |..+|+|.
T Consensus 189 ~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 189 VEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence 899999999999997 4778999999999988632 2278889999998 88999996
No 45
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.13 E-value=6.8e-05 Score=84.99 Aligned_cols=191 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHHHHHHHHHh-------hcCCCCccccccccchHHHHHHHHHHHHHhCCC----CCCChHHHHHHHHh-cCCCCCcccc
Q psy15438 16 GTKHAEYIKKY-------SDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQL----DDMPQDTIFDFITQ-CIHPCGGVSA 83 (358)
Q Consensus 16 ~~~h~~yl~~~-------~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~----~~~~~~~~i~~i~~-~q~~dGGF~~ 83 (358)
+++.++||++- +...+.++++.......|+|-|++..|....+. +....+++++||.+ +|++||.|..
T Consensus 1025 ~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1025 RTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccc
Confidence 34566666542 222233444555567889999999999988753 23345789999998 8999999954
Q ss_pred cC------------CCCCchhHHHHHHHHHHHhccc-----C--CCChHHHHHHHHhcCCCCCCcccccCCCcccchhHH
Q psy15438 84 SI------------SHDPHILYTLSAVQIACLINRE-----H--ELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFC 144 (358)
Q Consensus 84 ~~------------~~~~~~~~Ty~Al~~L~ll~~~-----~--~~~~~~~~~~l~s~Q~~dGgf~~~~~~esd~~~ty~ 144 (358)
.. +.+.++..|.+.+.+|...+.. . ...+++++.||.+.... +..+|.
T Consensus 1105 ~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~-------------~~~~Y~ 1171 (1642)
T 3prx_B 1105 NAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK-------------LQRPYT 1171 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc-------------CCCHHH
Confidence 21 1134566664444333322211 1 12467888898754211 111232
Q ss_pred -HHH--HHHHhCCCChhcHHHHHHHHHhcccCCCCCCCCCCC-CCcccHHHHHHHHHHhcccCChhcHHHHHHHHHhcCC
Q psy15438 145 -AVA--CLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGS-ESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQL 220 (358)
Q Consensus 145 -al~--~l~ll~~~~~~~~~~~v~~L~s~Q~~dGGf~~~pg~-esh~~~T~calasL~llg~~~~~~~~~~~~wL~~~Q~ 220 (358)
|++ +|++.+... +.++.-+.+. ++-+...++. ..++..|.+||.++..++.. ......++||.+.|+
T Consensus 1172 ~Ai~aYAl~l~~~~~----~~~l~~l~~~---~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~~--~~a~~iv~WL~~qr~ 1242 (1642)
T 3prx_B 1172 TALTAYALAAADQLN----DDRVLMAAST---GRDHWEEYNAHTHNIEGTSYALLALLKMKKF--DQTGPIVRWLTDQNF 1242 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCch----HHHHHHHHhc---CCCCCCCCCCchHHHHHHHHHHHHHhccCch--hhHHHHHHHHHHhcc
Confidence 222 334444421 1111111111 2223233332 23566778887776655532 346678999999999
Q ss_pred CCCcccCC
Q psy15438 221 PSGGLNGR 228 (358)
Q Consensus 221 ~~GGf~gr 228 (358)
..|||..-
T Consensus 1243 ~~Ggf~ST 1250 (1642)
T 3prx_B 1243 YGETYGQT 1250 (1642)
T ss_dssp --------
T ss_pred CCCcccCc
Confidence 99999864
No 46
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.86 E-value=0.026 Score=58.83 Aligned_cols=255 Identities=14% Similarity=0.081 Sum_probs=138.2
Q ss_pred chHHHHHHHHHhhcCCCCccccccccchHHHHHHHHHHHHHhCCCC-CCChHHHHHHHHhcCCCCCcccccCCCC--Cch
Q psy15438 15 LGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLD-DMPQDTIFDFITQCIHPCGGVSASISHD--PHI 91 (358)
Q Consensus 15 ~~~~h~~yl~~~~~~~~~~~~~~~~~~~~~~~y~~l~~L~lL~~~~-~~~~~~~i~~i~~~q~~dGGF~~~~~~~--~~~ 91 (358)
.++..++-|++.+....++. -+..+..|-|. ++.-..+ ...=.+.++||+..|.+||+|+...+.. -.+
T Consensus 10 ~~~~~~~~ir~~l~~~~~g~----~S~S~YDTAWV----Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~l 81 (727)
T 3pya_A 10 AFKEAVKSVKTILRNLTDGE----ITISAYDTAWV----ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDRL 81 (727)
T ss_dssp HHHHHHHHHHHHHHTCCSCC----CCCCHHHHHHH----HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCc----ccCcHHHhHHH----hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhHH
Confidence 45556666666654332211 13445678882 3443221 1223678999999999999998643211 247
Q ss_pred hHHHHHHHHHHHhcccCCCChHHHHHHHHhcCCC-C--------CCccc-cc--------CC-Cccc-chhHHHHHH---
Q psy15438 92 LYTLSAVQIACLINREHELPVDKIVAYVSKLQQP-D--------GSFFG-DM--------YG-EVDT-RFSFCAVAC--- 148 (358)
Q Consensus 92 ~~Ty~Al~~L~ll~~~~~~~~~~~~~~l~s~Q~~-d--------Ggf~~-~~--------~~-esd~-~~ty~al~~--- 148 (358)
.+|.+||.+|.--+ .....+++++.||.+.-.. + =||.- .| -+ +-.. ......+..
T Consensus 82 l~TLAcvlAL~~w~-~~~~~i~rGl~fl~~nl~~~~~~~~~~~pvGfeiifP~Ll~~a~~~gl~~p~~~~~l~~i~~~r~ 160 (727)
T 3pya_A 82 INTLACVVALRSWN-LFPHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKE 160 (727)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHGGGTTCCSSCCCCTTHHHHHHHHHHHHHHTTCCSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHhhccCCCCCCceeeeeHHHHHHHHHHcCcCCCCCchHHHHHHHhHH
Confidence 89988888876532 1122467888888764211 0 02210 00 00 0000 000011100
Q ss_pred --HHH-----h-CCCC----------hhcHHHHHHHHHhcccCCCCCCCCCCCCCcccHHHHHHHHHHhcccCChhcHHH
Q psy15438 149 --LSL-----L-GKLD----------AINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADK 210 (358)
Q Consensus 149 --l~l-----l-~~~~----------~~~~~~~v~~L~s~Q~~dGGf~~~pg~esh~~~T~calasL~llg~~~~~~~~~ 210 (358)
|.- + +... ..+-+ -+...|..||+|..+| ..|.+++.. .. -++
T Consensus 161 ~kL~r~~~~~~~~~p~~llhslEgl~~~dw~----~~~~~q~~~GS~~~SP------saTAa~l~~-----~~----d~~ 221 (727)
T 3pya_A 161 LKLTRIPKEIMHKIPTTLLHSLEGMRDLDWE----KLLKLQSQDGSFLFSP------SSTAFAFMQ-----TR----DSN 221 (727)
T ss_dssp HHHHHSCHHHHTTSCCGGGGGGGGCCCCCHH----HHGGGCCTTSSBTTBH------HHHHHHHHH-----HC----CHH
T ss_pred HHHhCCChhhccCCCchHHHHHhcccccCHH----HHhcccCCCCCcccCH------HHHHHHHhc-----CC----CHH
Confidence 000 0 0000 01111 1345567789888765 356665432 11 256
Q ss_pred HHHHHHhcCCCCCcccCCCCC-CCChhHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHhcCCCCCccccCCccCCCCCCc
Q psy15438 211 LAWWLAERQLPSGGLNGRPEK-LPDVCYSWWVLASLHMLGRGTWI--NSAALRKFILASQVRNTFYFEMGVFSDKIPVCG 287 (358)
Q Consensus 211 ~~~wL~~~Q~~~GGf~gr~~k-~~D~cys~w~~a~L~ll~~~~~~--d~~~l~~~ll~~Q~~~~~~~~~GGf~~~~p~~~ 287 (358)
+.+||.+.....+ ++.|.- +.|....-|.+-+|.-||-...+ ..+.+.++|.++... .|..
T Consensus 222 ~l~YL~~~v~k~~--g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~-------~g~~------- 285 (727)
T 3pya_A 222 CLEYLRNAVKRFN--GGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTD-------NGIC------- 285 (727)
T ss_dssp HHHHHHHHHHHTT--TCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCT-------TCCC-------
T ss_pred HHHHHHHHHHHcC--CCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhh-------cCcc-------
Confidence 7888877544322 355654 67888999999999999864322 134566666665433 2330
Q ss_pred ccccccccccccccccccccccccCCCCCCCCChHHHHHHHHHHHhcCCC
Q psy15438 288 VHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPP 337 (358)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~D~~hT~~~l~~Ls~~~~~ 337 (358)
.......+|++.|-.+.-.|...|++
T Consensus 286 ------------------------~~~~~~~~DL~~tAL~FRLLRqhGy~ 311 (727)
T 3pya_A 286 ------------------------WARCSHVQDIDDTAMAFRLLRQHGYQ 311 (727)
T ss_dssp ------------------------SSSSCSCCCHHHHHHHHHHHHHTTCC
T ss_pred ------------------------cccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 11122357999999999999999984
No 47
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=89.37 E-value=0.41 Score=50.59 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=40.8
Q ss_pred ChhcHHHHHHHHHhcccCCCCCCCCCCCCC--cccHHHHHHHHHHhcccCChhcHHHHHHHHHhc
Q psy15438 156 DAINLSKAVEFILSCCNFDGGFGSRPGSES--HAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218 (358)
Q Consensus 156 ~~~~~~~~v~~L~s~Q~~dGGf~~~pg~es--h~~~T~calasL~llg~~~~~~~~~~~~wL~~~ 218 (358)
..+....+++||++.|.+||+||....... -...|..||-||.--+. ....+++++.||.+.
T Consensus 99 ~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 99 ARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSN 162 (817)
T ss_dssp SSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 456679999999999999999986432111 13446666666654332 234577888888654
No 48
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=88.10 E-value=0.54 Score=49.46 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHHHhccc---CCCChHHHHHHHHhcCCCCCCcccccC-CCcc-cchhHHHHHHHHHhCCCChhcHHHH
Q psy15438 89 PHILYTLSAVQIACLINRE---HELPVDKIVAYVSKLQQPDGSFFGDMY-GEVD-TRFSFCAVACLSLLGKLDAINLSKA 163 (358)
Q Consensus 89 ~~~~~Ty~Al~~L~ll~~~---~~~~~~~~~~~l~s~Q~~dGgf~~~~~-~esd-~~~ty~al~~l~ll~~~~~~~~~~~ 163 (358)
+.+..| |- +++.... ....-.+.++||...|.+||||+.... ...| +-.|-+++.+|.--+. .+..++++
T Consensus 54 ~S~YDT--AW--Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~-~~~~i~~G 128 (785)
T 3s9v_A 54 PSAYDT--AW--VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT-GETQVQKG 128 (785)
T ss_dssp CCHHHH--HH--HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHH
T ss_pred CcHHHh--hH--HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc-CHHHHHHH
Confidence 557777 43 3333322 222347899999999999999986322 2234 5566666666665554 45688999
Q ss_pred HHHHHhcc
Q psy15438 164 VEFILSCC 171 (358)
Q Consensus 164 v~~L~s~Q 171 (358)
+.||.+.-
T Consensus 129 l~fl~~nl 136 (785)
T 3s9v_A 129 IEFFRTQA 136 (785)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
No 49
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=88.02 E-value=0.68 Score=48.56 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=39.9
Q ss_pred hhcHHHHHHHHHhcccCCCCCCCCCCCCC--cccHHHHHHHHHHhcccCChhcHHHHHHHHHhc
Q psy15438 157 AINLSKAVEFILSCCNFDGGFGSRPGSES--HAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218 (358)
Q Consensus 157 ~~~~~~~v~~L~s~Q~~dGGf~~~pg~es--h~~~T~calasL~llg~~~~~~~~~~~~wL~~~ 218 (358)
.+....+++||++.|.+||+||...+... -...|..||-||.--+. ....+++++.||.+.
T Consensus 52 ~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 52 KPRFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT-GHSQVQQGAEFIAEN 114 (764)
T ss_dssp EESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 45688999999999999999986432111 13446666666554332 234577888887654
No 50
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=81.52 E-value=1.8 Score=44.96 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=38.6
Q ss_pred hcHHHHHHHHHhcccCCCCCCCCCCCCC--cccHHHHHHHHHHhcccCChhcHHHHHHHHHhc
Q psy15438 158 INLSKAVEFILSCCNFDGGFGSRPGSES--HAGLTYCCVGFLSITGHLHEIDADKLAWWLAER 218 (358)
Q Consensus 158 ~~~~~~v~~L~s~Q~~dGGf~~~pg~es--h~~~T~calasL~llg~~~~~~~~~~~~wL~~~ 218 (358)
+...++++||++.|.+||+||...+-.. -...|..||-||.--+. ....+++++.||.+.
T Consensus 50 p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 50 PAFPSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL-FPHQCNKGITFFREN 111 (727)
T ss_dssp BSCHHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 4578999999999999999986321111 13446666666554221 233577788887653
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.87 E-value=31 Score=33.62 Aligned_cols=162 Identities=12% Similarity=0.061 Sum_probs=82.9
Q ss_pred HHHHHHHHhcC--CCCCcccccCCC--CCchhHHHHHHHHHHHhcccCC-C---ChH----HHHHHHHhcCCC-CCCccc
Q psy15438 65 DTIFDFITQCI--HPCGGVSASISH--DPHILYTLSAVQIACLINREHE-L---PVD----KIVAYVSKLQQP-DGSFFG 131 (358)
Q Consensus 65 ~~~i~~i~~~q--~~dGGF~~~~~~--~~~~~~Ty~Al~~L~ll~~~~~-~---~~~----~~~~~l~s~Q~~-dGgf~~ 131 (358)
++..+||...+ .++|||-..... .-.+...|+++-.|+.+..... . -.+ ....+...++.+ +|-|.-
T Consensus 171 ~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~H 250 (445)
T 3k11_A 171 QNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRH 250 (445)
T ss_dssp HHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECS
T ss_pred HHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEee
Confidence 45668898877 678998764321 2345566778777776643211 1 122 233344445544 454432
Q ss_pred c--cCC-C-c---ccchhHHHHHHH----HHhCCCCh------hcHHHHHHHHHhcccCCCCCCCCCCC---CCcccHHH
Q psy15438 132 D--MYG-E-V---DTRFSFCAVACL----SLLGKLDA------INLSKAVEFILSCCNFDGGFGSRPGS---ESHAGLTY 191 (358)
Q Consensus 132 ~--~~~-e-s---d~~~ty~al~~l----~ll~~~~~------~~~~~~v~~L~s~Q~~dGGf~~~pg~---esh~~~T~ 191 (358)
. ..+ . + =.|..-|++.++ ..+..-.+ ....+.++.++++|..+|-|...... ..+...|.
T Consensus 251 g~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTA 330 (445)
T 3k11_A 251 GWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATA 330 (445)
T ss_dssp EEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHH
T ss_pred eecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHH
Confidence 1 111 1 1 133444444433 33322111 24567888999999999988765432 22222222
Q ss_pred ---HHHHHHHhcccCCh----hcHHHHHHHHHhcCCCCCccc
Q psy15438 192 ---CCVGFLSITGHLHE----IDADKLAWWLAERQLPSGGLN 226 (358)
Q Consensus 192 ---calasL~llg~~~~----~~~~~~~~wL~~~Q~~~GGf~ 226 (358)
|+++-..-+|.++. ...+++.+-|..+-.++|-..
T Consensus 331 mfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 331 IYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 22222222343432 235677888888777777543
No 52
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=58.22 E-value=69 Score=30.22 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=81.9
Q ss_pred HHHHHHHhcC--CCCCcccccCC---C--CCchhHHHHHHHHHHHhcccCC------CChHHHHHHHHhcCCC-CCCccc
Q psy15438 66 TIFDFITQCI--HPCGGVSASIS---H--DPHILYTLSAVQIACLINREHE------LPVDKIVAYVSKLQQP-DGSFFG 131 (358)
Q Consensus 66 ~~i~~i~~~q--~~dGGF~~~~~---~--~~~~~~Ty~Al~~L~ll~~~~~------~~~~~~~~~l~s~Q~~-dGgf~~ 131 (358)
++.++|...+ .++|||-.... . ...+...+.++-.|+-+..... ...+.+..+...++.+ +|-|..
T Consensus 137 ~~ad~L~~~~~r~~~Ggf~~~~~~~~~~~~~WiDgl~M~~p~La~~~~~tgd~~y~d~A~~q~~~~~~~l~D~~tGl~~h 216 (382)
T 3pmm_A 137 SWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLMMTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFH 216 (382)
T ss_dssp HHHHHHHHTSCBCGGGCBCCCCSSCCCTTEEETTHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHBCTTTSCBCS
T ss_pred HHHHHHHhhCCCCcCCCeeeecCCCCCCCcEEecchhhhHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHccCCCCCCeee
Confidence 4557776544 56888864321 1 1223445667666665543211 1233445566667754 566532
Q ss_pred c--cCC------CcccchhHHHHHH----HHHhCCC--Ch------hcHHHHHHHHHhcccCCCCCCCCCCC---CCccc
Q psy15438 132 D--MYG------EVDTRFSFCAVAC----LSLLGKL--DA------INLSKAVEFILSCCNFDGGFGSRPGS---ESHAG 188 (358)
Q Consensus 132 ~--~~~------esd~~~ty~al~~----l~ll~~~--~~------~~~~~~v~~L~s~Q~~dGGf~~~pg~---esh~~ 188 (358)
. ..+ ..=.|..-+++.+ +..+... .+ ....+.+++++++|..||-|...... ..+..
T Consensus 217 ~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsS 296 (382)
T 3pmm_A 217 GWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEAS 296 (382)
T ss_dssp EEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHH
T ss_pred eccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCcccc
Confidence 1 001 1123334444433 3333221 11 23567888999999999988765432 22232
Q ss_pred HHHHHHHHH---HhcccCCh---hcHHHHHHHHHhcCCCCCcccC
Q psy15438 189 LTYCCVGFL---SITGHLHE---IDADKLAWWLAERQLPSGGLNG 227 (358)
Q Consensus 189 ~T~calasL---~llg~~~~---~~~~~~~~wL~~~Q~~~GGf~g 227 (358)
.|...+.+| .-+|.++. ...+++.+-|.++..++|-..+
T Consensus 297 atA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 297 ATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 232222222 21223322 2366788888888777775544
No 53
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.43 E-value=1.6e+02 Score=28.41 Aligned_cols=67 Identities=19% Similarity=0.088 Sum_probs=41.4
Q ss_pred hHHHHHHHHhcCCCCCCcccccCC-CcccchhHHHHHHHHHh-----CCCCh----hcHHHHHHHHHhcccCCCCCC
Q psy15438 112 VDKIVAYVSKLQQPDGSFFGDMYG-EVDTRFSFCAVACLSLL-----GKLDA----INLSKAVEFILSCCNFDGGFG 178 (358)
Q Consensus 112 ~~~~~~~l~s~Q~~dGgf~~~~~~-esd~~~ty~al~~l~ll-----~~~~~----~~~~~~v~~L~s~Q~~dGGf~ 178 (358)
.+++++.+.+.|.+||-|...... ++-.-.+-+|+.+..++ |.++. ...+++.+.|.++.+.||-.+
T Consensus 296 ~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 296 FRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 357888999999999988764322 12222223333333332 44443 346788899999888888654
No 54
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.05 E-value=38 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=20.8
Q ss_pred HHHHHHHHhcccCChhcHHHHHHHHHhcCCCC
Q psy15438 191 YCCVGFLSITGHLHEIDADKLAWWLAERQLPS 222 (358)
Q Consensus 191 ~calasL~llg~~~~~~~~~~~~wL~~~Q~~~ 222 (358)
-+|..+|..-+. |++++++||.+...+.
T Consensus 34 ~qA~kALKat~~----NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 34 ECVLRAMKKKGE----NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHCS----CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCC----CHHHHHHHHHhCCCCC
Confidence 466666766654 6899999999886654
No 55
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=34.76 E-value=1e+02 Score=28.96 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=42.8
Q ss_pred hHHHHHHHHhcCCCCCCcccccCC-CcccchhHHHHHHHHHh-----CCCCh---hcHHHHHHHHHhcccCCCCCCCC
Q psy15438 112 VDKIVAYVSKLQQPDGSFFGDMYG-EVDTRFSFCAVACLSLL-----GKLDA---INLSKAVEFILSCCNFDGGFGSR 180 (358)
Q Consensus 112 ~~~~~~~l~s~Q~~dGgf~~~~~~-esd~~~ty~al~~l~ll-----~~~~~---~~~~~~v~~L~s~Q~~dGGf~~~ 180 (358)
.+++++++.+.|.+||-|...... ++-.-.+-+|+.+..++ |.++. ...+++.+.|.++.+.||-.++.
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCe
Confidence 357888999999999988754322 12122222333333332 33332 35678899999998899876554
Done!