RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15438
(358 letters)
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} SCOP:
a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B*
3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B*
3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B*
Length = 331
Score = 320 bits (822), Expect = e-109
Identities = 198/354 (55%), Positives = 236/354 (66%), Gaps = 39/354 (11%)
Query: 2 RDVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDD 61
+DV + + P L KHA+YI Y K+DYEYCMSEYLRMSG+YWG+T + L+ QL
Sbjct: 6 KDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHR 65
Query: 62 MPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSK 121
M ++ I FI C H CGGVSASI HDPH+LYTLSAVQI L + H + VDK+VAYV
Sbjct: 66 MNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQS 125
Query: 122 LQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRP 181
LQ+ DGSF GD++GE+DTRFSFCAVA L+LLGKLDAIN+ KA+EF+LSC NFDGGFG RP
Sbjct: 126 LQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRP 185
Query: 182 GSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWV 241
GSESHAG YCC GFL+IT LH++++D L WWL ERQLPSGGLNGRPEKLPDVCYSWWV
Sbjct: 186 GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWV 245
Query: 242 LASLHMLGRGTWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRI 301
LASL ++GR WI+ LR FILA Q T
Sbjct: 246 LASLKIIGRLHWIDREKLRSFILACQDEETG----------------------------- 276
Query: 302 EQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTF 355
+DRP D+ DPFHTLFG+A L++L + PV P +CMP
Sbjct: 277 --------GFADRPGDMVDPFHTLFGIAGLSLLG--EEQIKPVSPVFCMPEEVL 320
>2h6f_B Protein farnesyltransferase beta subunit; ftase,
farnesyltransferase, farnesyl transferase,
prenyltransferase, CAAX, RAS, lipid modification,
prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP:
a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B*
1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B*
2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B*
1d8e_B* ...
Length = 437
Score = 281 bits (720), Expect = 4e-92
Identities = 93/387 (24%), Positives = 146/387 (37%), Gaps = 71/387 (18%)
Query: 1 MRDVDLTDNLPK-EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ- 58
+P+ KH Y+K+ + Y + R YW + +L LLD+
Sbjct: 59 FSSYKFNHLVPRLVLQREKHFHYLKRG-LRQLTDAYECLDASRPWLCYWILHSLELLDEP 117
Query: 59 LDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPV---DKI 115
+ + + F+ C P GG PH+ T +AV C+I E + +K+
Sbjct: 118 IPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKL 177
Query: 116 VAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDG 175
+ Y+ L+QPDGSF + GEVD R ++CA + SL + E+I C N++G
Sbjct: 178 LQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEG 237
Query: 176 GFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWWLAERQLP-SGGLNGRPEKLPD 234
G G PG E+H G T+C + L I ++ L W+ RQ+ GG GR KL D
Sbjct: 238 GIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297
Query: 235 VCYSWWVLASLHMLGRGTW-------------INSAALRKFILASQVRNTFYFEMGVFSD 281
CYS+W L +L R + AL+++IL G
Sbjct: 298 GCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCC----QCPAGG---- 349
Query: 282 KIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLD------ 335
+ D+P D +HT + ++ L++
Sbjct: 350 -----------------------------LLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA 380
Query: 336 --------PPTPDVLPVDPTYCMPVRT 354
P + P P Y +
Sbjct: 381 MLHDVVLGVPENALQPTHPVYNIGPDK 407
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B*
3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 272 bits (697), Expect = 9e-88
Identities = 72/396 (18%), Positives = 129/396 (32%), Gaps = 56/396 (14%)
Query: 3 DVDLTDNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLD-QLDD 61
V +H +++ S + ++ + R ++W + +L LL LD
Sbjct: 50 LVSEHGKRYSGLRKQEHTQFLAS-SFFQLPGKFVSLDASRPWLVFWTVHSLDLLGVALDQ 108
Query: 62 MPQDTIFDFITQCIHPCGGVSASISHD--PHILYTLSAVQIACLINREHELP-------- 111
+D + + + P GG ++ PH+L T ++V + +
Sbjct: 109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAA 168
Query: 112 VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171
I + + ++PDG F GEVD R ++C + +LL + L +F+ +C
Sbjct: 169 RQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQ 228
Query: 172 NFDGGFGS-----------------------RPGSESHAGLTYCCVGFLSITGHLHE--- 205
++GGF +E+H G T C + + +
Sbjct: 229 TYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSF 288
Query: 206 ---IDADKLAWWLAERQ---LPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAAL 259
IDA+ W +Q + GG GR KL D CYSWWV + +
Sbjct: 289 PLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK 348
Query: 260 RKFILASQVRNTFYFEMGVFSDKIPVC----GVHYVDYCTQVRNRIEQGCSVRTCISDRP 315
K + P+ + Q G + D+P
Sbjct: 349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGG------LRDKP 402
Query: 316 LDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMP 351
PD +HT ++ L++
Sbjct: 403 GKRPDQYHTCNNLSGLSIAQ--HKMSHSPSTVSSNR 436
Score = 28.7 bits (63), Expect = 3.6
Identities = 18/172 (10%), Positives = 38/172 (22%), Gaps = 17/172 (9%)
Query: 42 RMSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGGVSASISHDPHILYTLSAVQIA 101
+W + ++L + + + I
Sbjct: 323 DGCYSWWVGGGAPVAEELVRREKS----------RKVKKSRIEVFEEEKEGDWEDVPPIP 372
Query: 102 CLINREHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLS 161
+ NR + + + G D + ++ LS+ + + S
Sbjct: 373 PIFNRVALQ--EFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPS 430
Query: 162 KAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKLAW 213
L G +P + EI A+ L W
Sbjct: 431 TVSSNRLKFDASKGLPAVKPVAPG-----GGWKNEDERQNARREIWANALGW 477
>1n4q_B Geranyltransferase type-I beta subunit; protein
geranylgeranyltransferase type-I, ggtase; HET: MGM GER;
2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B*
1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B*
1tnz_B*
Length = 377
Score = 267 bits (682), Expect = 4e-87
Identities = 83/380 (21%), Positives = 144/380 (37%), Gaps = 74/380 (19%)
Query: 8 DNLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQDTI 67
+ +FL +H + ++ Y E R++ ++ ++ L +LD LD + +D I
Sbjct: 14 EGERLDFLRDRHVRFFQRCLQVL-PERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDI 72
Query: 68 FDFITQCIHPC--------------------------GGVSASISHDPHILYTLSAVQIA 101
++I +A HI T + +
Sbjct: 73 IEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCL 132
Query: 102 CLINRE-HELPVDKIVAYVSKLQQPDGSFFG-DMYGEVDTRFSFCAVACLSLLGKLDAIN 159
++ + + + +A + LQ DGSF E D RF +CA +L ++
Sbjct: 133 IILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMD 192
Query: 160 LSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEI----DADKLAWWL 215
+ KA+ +I ++D G G ESH G T+C + L + G L E+ + +++ W
Sbjct: 193 MKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWC 252
Query: 216 AERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILASQVRNTFYFE 275
RQ G +GRP K D CYS+WV A+L +L + N R +IL++Q
Sbjct: 253 IMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQ-----DRL 305
Query: 276 MGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLD 335
+G F+ P PD H FG+ L++++
Sbjct: 306 VGGFAKW--------------------------------PDSHPDALHAYFGICGLSLME 333
Query: 336 PPTPDVLPVDPTYCMPVRTF 355
+ V P + RT
Sbjct: 334 --ESGICKVHPALNVSTRTS 351
Score = 37.8 bits (87), Expect = 0.004
Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 10/135 (7%)
Query: 47 YWGITTLSLLDQLDDMPQDTIFDFITQ--CIHPCGGVSASISHDPHILYTLSAVQIACLI 104
+ GI +L L+ +L+++ + + I + + G + Y+ L+
Sbjct: 224 FCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLL 283
Query: 105 NREHELPVDKIVAYVSKLQQPDGSFFGDMYGE-VDTRFSFCAVACLSLLGKLD------A 157
+K Y+ Q F D ++ + LSL+ + A
Sbjct: 284 KIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPA 343
Query: 158 INLS-KAVEFILSCC 171
+N+S + E +
Sbjct: 344 LNVSTRTSERLRDLH 358
>3dra_B Geranylgeranyltransferase type I beta subunit;
geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
prenyltransferase, farnesyltransferase; HET: B3P GRG;
1.80A {Candida albicans}
Length = 390
Score = 265 bits (677), Expect = 2e-86
Identities = 75/417 (17%), Positives = 130/417 (31%), Gaps = 112/417 (26%)
Query: 13 EFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQLDDMPQD--TIFDF 70
+ L KH ++ + + +++ +Y+ + L L+ + Q+ +F
Sbjct: 3 QLLINKHEKFFNRCLIGL-PSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNF 61
Query: 71 ITQCIHPC------------GGVSASISHDPHILYTLSAVQIACLINREHELPV--DKIV 116
I + P++ TL A+ ++ + + KI+
Sbjct: 62 IINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIM 121
Query: 117 AYVSKLQQPDGSFFG---------------DMYGEVDTRFSFCAVACLSLLGKLDA---- 157
++ K Q DG G YGE D R + A+ L+ D
Sbjct: 122 NFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNN 181
Query: 158 ---------INLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDA 208
I+L +FIL N +GGF S ESH G T+C + L +
Sbjct: 182 NREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLN-YPLEKL 240
Query: 209 DKLAWWLAERQL----------------------------PSGGLNGRPEKLPDVCYSWW 240
WL RQ+ GG NGR KL D CYSWW
Sbjct: 241 KSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWW 300
Query: 241 VLASLHMLGRG--TWINSAALRKFILASQVRNTFYFEMGVFSDKIPVCGVHYVDYCTQVR 298
SL+ + ++ ++L TQ
Sbjct: 301 CTGSLYNIDVNFIKLVDLNKAEDYLL----------------------------NKTQ-- 330
Query: 299 NRIEQGCSVRTCISDRPLDIPDPFHTLFGVAALTMLDPPTPDVLPVDPTYCMPVRTF 355
+ P PDP H+ +A+L++ + + ++P + ++
Sbjct: 331 ------NQLFGGFGRDPDSTPDPMHSYLALASLSLWNHEKFALQEINPILTITKESY 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 47/328 (14%), Positives = 86/328 (26%), Gaps = 101/328 (30%)
Query: 92 LYTLSAVQIACLINREHEL-------PVDKIVAYVSKL----------QQPDGSFFGDMY 134
LY V + LI E +D + L PD +
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---- 231
Query: 135 GEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCCNFDGGFGSRPGS--ESHAGLTYC 192
++C L I + + ++++ G PG G T
Sbjct: 232 -------LSIPISC-----PL--IGVIQLAHYVVTAKLL----GFTPGELRSYLKGATGH 273
Query: 193 CVG-----FLSITG---HLHEIDADKLAW--WLAER-QLPSGGLNGRPEKLPDVCYSWWV 241
G ++ T + ++ R + P L D +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 242 LASLHMLG-RGTWINSAALRKFI--------LASQV----RNTFYFEMGVFSDKIPVCGV 288
+ S ML + ++ ++ QV N + + V G
Sbjct: 334 VPS-PMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNG--------AKNLVVSG- 381
Query: 289 HYVD---YCTQVRNR-----IEQGCSVRTCISDRP-------LDIPDPFHT--LFGVAAL 331
+R ++Q R S+R L + PFH+ L + L
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 332 TMLDPPTPDVLPVDPTYC-MPVRTFHSE 358
D +V + +PV + +
Sbjct: 439 INKDLVKNNVS-FNAKDIQIPV--YDTF 463
Score = 30.4 bits (68), Expect = 1.1
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 46/124 (37%)
Query: 254 INSAALRKFIL------------------ASQVRNTFYFEM-----GVFSDKIPVCGVH- 289
+++ + R L ASQ++ F + G +D P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 290 ---YVDYCTQVRNRIEQG--CSV---------RTCISDRPLDIPDPFHTLFGVAALTMLD 335
++ Y + + + G V + DI H L A L +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN--DI----HAL--AAKLLQEN 112
Query: 336 PPTP 339
T
Sbjct: 113 DTTL 116
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic
membrane protein, QW-sequence, repeat; HET: C8E; 2.00A
{Alicyclobacillus acidocaldarius} SCOP: a.102.4.2
a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A*
1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A*
1o79_A* 1sqc_A* 1o6r_A*
Length = 631
Score = 48.7 bits (115), Expect = 2e-06
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 106 REHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGK-LDAINLSKAV 164
+ + + V Y+ + Q+PDGS+F +G + V+ L +G + KA+
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWF-GRWGVNYLYGTGAVVSALKAVGIDTREPYIQKAL 520
Query: 165 EFILSCCNFDGGFGS----------RPGSESHAGLTYCCVGFLSITGHLHEIDADKLAWW 214
+++ N DGG+G S T + L G A + +
Sbjct: 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQY 580
Query: 215 LAERQLPSGG 224
L E Q P GG
Sbjct: 581 LVETQRPDGG 590
Score = 44.1 bits (103), Expect = 6e-05
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 112 VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171
+D+ V Y+ Q+ +G ++G + + V +L ++D + K ++L
Sbjct: 15 LDRAVEYLLSCQKDEGYWWGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQ 72
Query: 172 NFDGGFGSRPGSESHAGLTYCCVGFLSITGH-LHEIDADKLAWWLAERQLPSGGLNGRP 229
DG + PG T L G E K ++ + GG+
Sbjct: 73 REDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQ----GGIESSR 127
Score = 43.3 bits (101), Expect = 9e-05
Identities = 35/215 (16%), Positives = 61/215 (28%), Gaps = 35/215 (16%)
Query: 112 VDKIVAYVSKLQQPDGSF----------------FGDMYGEVDTRFSFCAVACLSLLGKL 155
+ K ++ +Q +G + F D D L G
Sbjct: 400 MTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSF 459
Query: 156 ----DAINLSKAVEFILSCCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHEIDADKL 211
+ +AVE++ DG + R G G ++ E K
Sbjct: 460 GYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKA 519
Query: 212 AWWLAERQLPSGGLNGRPEKLPDVCY----------SWWVLASLHMLGRGTWINSAALRK 261
W+ + Q P GG D Y + W L +L GR + +
Sbjct: 520 LDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQ 579
Query: 262 FILASQVRNTFYFE---MGVFSDKIPVCGVHYVDY 293
+++ +Q + + E G + Y Y
Sbjct: 580 YLVETQRPDGGWDEPYYTGTGFPG--DFYLGYTMY 612
Score = 27.5 bits (60), Expect = 7.8
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 69 DFITQCIHPCGGVSASISHDPHILY----------TLSAVQIACLINREHELPVDKIVAY 118
D++ Q +P GG Y T A+ R + V Y
Sbjct: 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQY 580
Query: 119 VSKLQQPDGSF 129
+ + Q+PDG +
Sbjct: 581 LVETQRPDGGW 591
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 40.6 bits (94), Expect = 7e-04
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 106 REHELPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGK-----LDAINL 160
E + + + + + Q+ DGS+ +G T ++ + + +G+ +
Sbjct: 554 AEIRETLTQGLEFCRRQQRADGSWE-GSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEV 612
Query: 161 SKAVEFILSCCNFDGGFGSR----------PGSESHAGLTYCCVGFLSITGHLHEIDADK 210
S+A +F+LS DGG+G ++S T + L H ++
Sbjct: 613 SRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHPDIEAQER 672
Query: 211 LAWWLAERQLPSG 223
L E+QLP+G
Sbjct: 673 GVRCLLEKQLPNG 685
Score = 33.7 bits (76), Expect = 0.098
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 112 VDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFCAVACLSLLGKLDAINLSKAVEFILSCC 171
+ + LQ DG + GD G + + C L A + V ++ S
Sbjct: 77 ALNGMTFYVGLQAEDGHWTGDYGGPL-FLLPGLLITCHVARIPLPAGYREEIVRYLRSVQ 135
Query: 172 NFDGGFGSRPGSESHAGLTYCCVGFLSITGH 202
DGG+G +S T L I G
Sbjct: 136 LPDGGWGLHIEDKSTVFGTALNYVSLRILGV 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 58/386 (15%), Positives = 108/386 (27%), Gaps = 116/386 (30%)
Query: 1 MRDVDLTD--NLPKEFLGTKHAEYIKKYSDNKEDYEYCMSEYLRMSGMYWGITTLSLLDQ 58
+ + D D ++PK L + ++I D TL L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-------------------GTLRLFWT 70
Query: 59 LDDMPQDTIFDFI----------------TQCIHPCGGVSASIS-HDPHILYTLSAVQIA 101
L ++ + F+ T+ P I D LY + V
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAK 128
Query: 102 CLINREHELPVDKIVAYVSKLQQPDG-SFFGDMYG--------------EVDTRFSFCAV 146
++R P K+ + +L+ G + G +V + F +
Sbjct: 129 YNVSRLQ--PYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDF-KI 184
Query: 147 ACLSLLGKLDAINLSKAVEFILS-CCNFDGGFGSRPGSESHAGLTYCCVGFLSITGHLHE 205
L+ L ++ +E + D + SR S +I +H
Sbjct: 185 FWLN-LKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSS------------NIKLRIHS 229
Query: 206 IDADKLAWWLAERQLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRGTWINSAALRKFILA 265
I +L L + + L L +V + A F L+
Sbjct: 230 IQ-AELRRLLKSKPYENCLL-----VLLNVQNAK------------------AWNAFNLS 265
Query: 266 SQV----RNTFYFEMGVFSDKIPVCGVHYVDYCTQVRNRIEQGCSV-RTCISDRPLDIP- 319
++ R + + + H+ T ++ S+ + RP D+P
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPR 320
Query: 320 -----DPFHTLFGVAALTMLDPPTPD 340
+P L +A T D
Sbjct: 321 EVLTTNPRR-LSIIAESIRDGLATWD 345
Score = 36.0 bits (82), Expect = 0.018
Identities = 26/190 (13%), Positives = 46/190 (24%), Gaps = 85/190 (44%)
Query: 3 DVDLTDNLPKEFLGTKHAEYIKKY-----------SDNKED-YEYC----------MSE- 39
+ L + E H + Y D Y Y E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 40 -------YL---------RMSGMYWGITT--LSLLDQL--------DDMPQ-----DTIF 68
+L R W + L+ L QL D+ P+ + I
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 69 DFITQCIHPCGGVSASISHDPHILYTLSAVQIACLINREHELPVDKIVAYVSKLQQPDGS 128
DF+ + ++ + ++IA L D +
Sbjct: 550 DFLPKI-------EENLICSKY----TDLLRIA--------------------LMAEDEA 578
Query: 129 FFGDMYGEVD 138
F + + +V
Sbjct: 579 IFEEAHKQVQ 588
Score = 34.8 bits (79), Expect = 0.042
Identities = 61/389 (15%), Positives = 103/389 (26%), Gaps = 131/389 (33%)
Query: 13 EFLGTKHAEYIKKYSDNKEDYEYC----------MSEY----------LR---------- 42
+FL + ++ S Y ++Y LR
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 43 ------MSGMYWGITTLSLLDQLDDMPQDTIFDFITQCIHPCGG--VSASISHDPH---- 90
+ G G T ++L D + QC ++ + P
Sbjct: 152 NVLIDGVLGS--GKTWVAL---------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 91 ILYTLSAVQIACLINREHE------LPVDKIVAYVSKLQQPDGSFFGDMYGEVDTRFSFC 144
+L L QI + L + I A + +L Y
Sbjct: 201 MLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYEN-------- 245
Query: 145 AVACLSLLGKLDAINLSKAVE-FILSC---------CNFDGGFGSRPGSESHAGLTYCCV 194
LL L + +KA F LSC D + +H L + +
Sbjct: 246 -----CLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSM 296
Query: 195 GFLSITGHLHEIDADKL-AWWLAER--QLPSGGLNGRPEKLPDVCYSWWVLASLHMLGRG 251
+ L +L R LP L P +L ++A G
Sbjct: 297 TL-------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-------IIAESIRDGLA 342
Query: 252 TW-----INSAALRKFILAS-------QVRNTFYFEMGVFSD--KIP--VCGVHYVDYCT 295
TW +N L I +S + R + + VF IP + + + D
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 296 QVRNRIEQGCSVRTCISDRPLD----IPD 320
+ + + +P + IP
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.456
Gapped
Lambda K H
0.267 0.0453 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,791,760
Number of extensions: 347817
Number of successful extensions: 944
Number of sequences better than 10.0: 1
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 38
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.8 bits)