BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15439
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class
Of Transcription Factors, The Lim-Homeodomain Proteins,
In Neural Cell Type Specification
pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class
Of Transcription Factors, The Lim-Homeodomain Proteins,
In Neural Cell Type Specification
Length = 169
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MPNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDS 60
M + +C C + I D+++L+V D +H +C+ C +C LA CF+R +YC+ D+
Sbjct: 3 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 62
Query: 61 R 61
R
Sbjct: 63 R 63
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDSR 61
+C +C + I ++R A D YH +C AC+ C LA + +L C+ DY++
Sbjct: 67 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETA 126
Query: 62 KK 63
K+
Sbjct: 127 KQ 128
>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
P + C C + I DR++L+ D +H C+ C +C LA CF+R +YC+ D+ R
Sbjct: 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 63
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 ECGSC--GRPITDRYLLRVADISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDS 60
+C +C G P T + + R D YH +C ACV C LA +++L C++DY++
Sbjct: 67 KCAACQLGIPPT-QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 125
Query: 61 RKK 63
K+
Sbjct: 126 AKQ 128
>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
P + C C + I DR++L+ D +H C+ C +C LA CF+R +YC+ D+ R
Sbjct: 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 117
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 ECGSC--GRPITDRYLLRVADISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDS 60
+C +C G P T + + R D YH +C ACV C LA +++L C++DY++
Sbjct: 121 KCAACQLGIPPT-QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179
Query: 61 RKK 63
K+
Sbjct: 180 AKQ 182
>pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH---SCFTRENKLYCRSDY 58
K C CG I DR+LL D +H C+ C C L S +T+ + CR+DY
Sbjct: 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 118
>pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH---SCFTRENKLYCRSDY 58
+ K C CG I DR+LL D +H C+ C C L S +T+ + CR+DY
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4
Lim Domains 1 And 2 With The Lim Interacting Domain Of
Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4
Lim Domains 1 And 2 With The Lim Interacting Domain Of
Ldb1
Length = 195
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH---SCFTRENKLYCRSDY 58
+ K C CG I DR+LL D +H C+ C C L S +T+ + CR+DY
Sbjct: 2 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 60
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH---SCFTRENKLYCRSDY 58
+ K C CG I DR+LL D +H C+ C C L S +T+ + CR+DY
Sbjct: 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY 62
>pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECG---HSLAHSCFTRENKLYCRSDY 58
CG C + I DRY L+ D +HE+C++C CG + + + + CR DY
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 60
>pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2
Crystal Form
Length = 131
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH---SCFTRENKLYCRSDY 58
CG C + I DRY L+ D +HE+C++C CG L + + + CR DY
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 59
>pdb|2DLO|A Chain A, Solution Structure Of The Second Lim Domain Of Human
Thyroid Receptor-Interacting Protein 6
Length = 81
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 MPNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRE--NKLYCRSDY 58
+ +++C +C +PI DR +LR +YH C CV C L FT + ++++C D+
Sbjct: 12 VATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDF 70
>pdb|1CXX|A Chain A, Mutant R122a Of Quail Cysteine And Glycine-Rich Protein,
Nmr, Minimized Structure
Length = 113
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFT-RENKLYCRSDY 58
++C +CG + + A +H+NC C +CG SL + T +E ++YC+ Y
Sbjct: 35 GAEKCSACGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCY 91
>pdb|1IBI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, 15
Minimized Model Structures
pdb|1QLI|A Chain A, Quail Cysteine And Glycine-Rich Protein, Nmr, Minimized
Average Structure
Length = 113
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFT-RENKLYCRSDY 58
++C CG + + A +H+NC C +CG SL + T +E ++YC+ Y
Sbjct: 35 GAEKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCY 91
>pdb|1X3H|A Chain A, Solution Structure Of The Lim Domain Of Human Leupaxin
Length = 80
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 6 ECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRK 62
+CG C RP+ + Y L D +H C C +C S + S F + + +C Y R+
Sbjct: 17 KCGGCNRPVLENY-LSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73
>pdb|1CTL|A Chain A, Structure Of The Carboxy-Terminal Lim Domain From The
Cysteine Rich Protein Crp
Length = 85
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFT-RENKLYCRSDY 58
C CG+ + + A S+H++C C +CG SL + ++ ++YC+ Y
Sbjct: 11 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCY 63
>pdb|1B8T|A Chain A, Solution Structure Of The Chicken Crp1
Length = 192
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFT-RENKLYCRSDY 58
C CG+ + + A S+H++C C +CG SL + ++ ++YC+ Y
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCY 170
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 2 PNM---KECGSCGRPITDRYLLRVADISYHENCVACVECGHSL-AHSCFTRENKLYCRSD 57
PN K+CG C + + ++ S+H++C C+ C +L + + +++YC+S
Sbjct: 2 PNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSC 61
Query: 58 Y 58
Y
Sbjct: 62 Y 62
>pdb|1NYP|A Chain A, 4th Lim Domain Of Pinch Protein
pdb|1U5S|B Chain B, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 66
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHS-LAHSCFTRENKLYCRSDYDS 60
CG+C RPI R ++ +H C +C L H + R+ YC + Y+
Sbjct: 8 CGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61
>pdb|1WIG|A Chain A, Solution Structure Of Rsgi Ruh-019, A Lim Domain Of
Actin Binding Lim Protein 2 (kiaa1808 Protein) From
Human Cdna
Length = 73
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHS 44
C SC + IT R +L + YH +C CV CG A
Sbjct: 8 CDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAEG 44
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLA---HSCFTRENKLYCRS 56
C C R D + D +H VAC +CG SL+ CF E K ++
Sbjct: 164 CEKCSREYHDPH-----DRRFHAQPVACFDCGPSLSFVGEGCFDDEIKCVAKA 211
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding
Lim Protein 3
Length = 80
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
C C I L D +H +C C C L +++ YC SDY ++
Sbjct: 18 CAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQ 72
>pdb|2CUP|A Chain A, Solution Structure Of The Skeletal Muscle Lim-Protein 1
Length = 101
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 7 CGSCGRPI-TDRYLLRVADISYHENCVACVECGHSLAHSCF-TRENKLYC 54
C C +PI D + + +H+ C C +C H LA+ F ++NK+ C
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILC 57
>pdb|1A7I|A Chain A, Amino-Terminal Lim Domain From Quail Cysteine And
Glycine- Rich Protein, Nmr, Minimized Average Structure
Length = 81
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 1 MPNM---KECGSCGRPITDRYLLRVADISYHENCVACVECGHSL-AHSCFTRENKLYCRS 56
MPN +CG+CGR + ++ S+H C C+ C +L + + + ++YC+S
Sbjct: 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKS 60
Query: 57 DYDSR 61
Y +
Sbjct: 61 CYGKK 65
>pdb|1X62|A Chain A, Solution Structure Of The Lim Domain Of Carboxyl
Terminal Lim Domain Protein 1
Length = 79
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSC-FTRENKLYCRSDYDSRKKG 64
C CG I ++ ++ D H C C +CG +L F E+++YC R G
Sbjct: 18 CDKCGTGIVGVFV-KLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSG 75
>pdb|2O13|A Chain A, Solution Structure Of The C-Terminal Lim Domain Of
MlpCRP3
Length = 58
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 6 ECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFT-RENKLYCRSDY 58
+C CG+ + + +H+ C C CG SL + T ++ +LYC+ Y
Sbjct: 1 KCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCY 54
>pdb|2QR4|A Chain A, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
pdb|2QR4|B Chain B, Crystal Structure Of Oligoendopeptidase-F From
Enterococcus Faecium
Length = 587
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 36 ECGHSLAHSCFTRENKLYCRSDY 58
E GHS+ HS FTR N+ Y DY
Sbjct: 370 EXGHSV-HSYFTRSNQPYVYGDY 391
>pdb|1G47|A Chain A, 1st Lim Domain Of Pinch Protein
Length = 77
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 27 YHENCVACVECGHSLAHSCFTR-ENKLYCRSDYD 59
YHE C C +C F E + YC D+
Sbjct: 35 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 27 YHENCVACVECGHSLAHSCFTR-ENKLYCRSDYD 59
YHE C C +C F E + YC D+
Sbjct: 35 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68
>pdb|2KBX|B Chain B, Solution Structure Of Ilk-Pinch Complex
Length = 70
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 27 YHENCVACVECGHSLAHSCFTR-ENKLYCRSDYD 59
YHE C C +C F E + YC D+
Sbjct: 31 YHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 64
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 28 HENCVACVECGHSLAH-----SCFTRENKLYCRSDYD 59
H++ V CVECG+ RE +YC D++
Sbjct: 27 HKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHN 63
>pdb|2O10|A Chain A, Solution Structure Of The N-Terminal Lim Domain Of
MlpCRP3
Length = 60
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 6 ECGSCGRPITDRYLLRVADISYHENCVACVECGHSL-AHSCFTRENKLYCRSDYDSR 61
+CG+C + + ++ S+H+ C C+ C +L + + E+++YC+ Y R
Sbjct: 3 KCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRR 59
>pdb|3IXE|B Chain B, Structural Basis Of Competition Between Pinch1 And
Pinch2 For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 72
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 27 YHENCVACVECGHSLAHSCFTR-ENKLYCRSDYD 59
YHE+C C +C F E + YC D+
Sbjct: 35 YHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,676,773
Number of Sequences: 62578
Number of extensions: 74240
Number of successful extensions: 311
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 276
Number of HSP's gapped (non-prelim): 48
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)