BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15439
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P61376|LHX5_RAT LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
M C C RPI DR+LL V D ++H CV C EC +L+ CF+RE KLYC++D+ R
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRR 59
>sp|P61375|LHX5_MOUSE LIM/homeobox protein Lhx5 OS=Mus musculus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
M C C RPI DR+LL V D ++H CV C EC +L+ CF+RE KLYC++D+ R
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRR 59
>sp|Q9H2C1|LHX5_HUMAN LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 PE=2 SV=1
Length = 402
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
M C C RPI DR+LL V D ++H CV C EC +L+ CF+RE KLYC++D+ R
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRR 59
>sp|P53411|LHX1_CHICK LIM/homeobox protein Lhx1 OS=Gallus gallus GN=LHX1 PE=2 SV=1
Length = 406
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|P29674|LHX1_XENLA LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
Length = 403
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+ R
Sbjct: 1 MVHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRR 58
>sp|Q5IS89|LHX1_SAIBB LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis
GN=LHX1 PE=2 SV=1
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|P63007|LHX1_RAT LIM/homeobox protein Lhx1 OS=Rattus norvegicus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|Q5IS44|LHX1_PANTR LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|P63006|LHX1_MOUSE LIM/homeobox protein Lhx1 OS=Mus musculus GN=Lhx1 PE=1 SV=1
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|P63008|LHX1_MESAU LIM/homeobox protein Lhx1 OS=Mesocricetus auratus GN=Lhx1 PE=2
SV=1
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|P48742|LHX1_HUMAN LIM/homeobox protein Lhx1 OS=Homo sapiens GN=LHX1 PE=1 SV=2
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
>sp|O60663|LMX1B_HUMAN LIM homeobox transcription factor 1-beta OS=Homo sapiens GN=LMX1B
PE=1 SV=2
Length = 379
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
P+ C C RPI+DR+L+RV + S+HE C+ C C +L SC+ R+ KLYC+ DY
Sbjct: 28 PHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDY 84
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 6 ECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRK 62
+C C I +++R + YH C C C L +E +L C+ DY+ K
Sbjct: 91 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEK 150
>sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gallus GN=LMX1B PE=2 SV=1
Length = 377
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
P+ C C RPI+DR+L+RV + S+HE C+ C C +L SC+ R+ KLYC+ DY
Sbjct: 28 PHQAVCEGCQRPISDRFLMRVNESSWHEECLQCAVCQQALTTSCYFRDRKLYCKQDY 84
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 6 ECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRK 62
+C C I +++R + YH +C C C L +E +L C+SDY+ K
Sbjct: 91 KCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEK 150
>sp|O88609|LMX1B_MOUSE LIM homeobox transcription factor 1-beta OS=Mus musculus GN=Lmx1b
PE=2 SV=2
Length = 372
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
P+ C C RPI+DR+L+RV + S+HE C+ C C +L SC+ R+ KLYC+ DY
Sbjct: 28 PHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDY 84
>sp|Q60564|LMX1B_MESAU LIM homeobox transcription factor 1-beta (Fragment)
OS=Mesocricetus auratus GN=LMX1B PE=2 SV=1
Length = 369
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
P+ C C RPI+DR+L+RV + S+HE C+ C C +L SC+ R+ KLYC+ DY
Sbjct: 18 PHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTTSCYFRDRKLYCKQDY 74
>sp|P37137|LHX5_XENLA LIM/homeobox protein Lhx5 OS=Xenopus laevis GN=lhx5 PE=1 SV=2
Length = 402
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 2 MAHCAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKTDF 56
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS---CFTRENKLYCRSDY 58
+C C I+ L+R A + +H NC C+ C L+ ENK C+ DY
Sbjct: 63 KCAGCSLGISPSDLVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>sp|Q90476|LHX1_DANRE LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1
Length = 405
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
M C C RPI DR+LL V D ++H CV C EC +L CF+RE KLYC++D+
Sbjct: 1 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEKCFSREGKLYCKNDF 55
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 6 ECGSCGRPITDRYLLRVADIS-YHENCVACVECGHSLAHS---CFTRENKLYCRSDY--D 59
+C C + I+ L+R A +H NC C+ C L+ ENK C+ DY +
Sbjct: 62 KCAGCAQGISPNDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDYLSN 121
Query: 60 SRKKGSQLVTV 70
+ K S L++V
Sbjct: 122 TNGKDSNLLSV 132
>sp|Q8UVR3|LMX1B_XENLA LIM homeobox transcription factor 1-beta.1 OS=Xenopus laevis
GN=lmx1b.1 PE=2 SV=1
Length = 400
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
C C RPI+DR+L+RV + S+HE C+ C C L SC+ R+ KL+C+ DY
Sbjct: 56 CEGCQRPISDRFLMRVNEASWHEECLQCTVCQQPLTTSCYFRDRKLFCKQDY 107
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 6 ECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRK 62
+C C I +++R + YH +C C C L +E +L C+SDY+ K
Sbjct: 114 KCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEK 173
>sp|P52889|LHX5_DANRE LIM/homeobox protein Lhx5 OS=Danio rerio GN=lhx5 PE=2 SV=1
Length = 399
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
M C C RPI DR+LL V D ++H CV C EC +L CF+R+ KLYC+ D+ R
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEKCFSRDGKLYCKIDFFRR 59
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens
GN=LMX1A PE=2 SV=1
Length = 382
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYD 59
C C R I DR+LLR+ D +HE CV C C L +CF R+ KLYC+ DY+
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYE 87
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 6 ECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRK 62
+CG C I + +++R YH +C C C L +E +L C+ DY+ +
Sbjct: 93 KCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKER 152
Query: 63 KGSQLVT 69
+ LV+
Sbjct: 153 ELLSLVS 159
>sp|Q04650|LMX1A_MESAU LIM homeobox transcription factor 1-alpha OS=Mesocricetus auratus
GN=LMX1A PE=2 SV=1
Length = 382
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYD 59
C C R I+DR+LLR+ D +HE CV C C L +CF R+ KLYC+ Y+
Sbjct: 35 CEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYHYE 87
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 6 ECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRK 62
+CG C I + +++R YH +C C C L +E +L C+ DY+ +
Sbjct: 93 KCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKER 152
Query: 63 KGSQLVT 69
+ LV+
Sbjct: 153 ELLSLVS 159
>sp|Q9JKU8|LMX1A_MOUSE LIM homeobox transcription factor 1-alpha OS=Mus musculus
GN=Lmx1a PE=2 SV=1
Length = 382
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYD 59
C C R I+DR+LLR+ D +HE CV C C L +CF R+ KLYC+ Y+
Sbjct: 35 CEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYHYE 87
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 6 ECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRK 62
+CG C I + +++R YH +C C C L +E +L C+ DY+ +
Sbjct: 93 KCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKER 152
Query: 63 KGSQLVT 69
+ LV+
Sbjct: 153 ELLSLVS 159
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
P + +C C + I DR++L+V D +H C+ C +C LA CF+R + +YC+ D+ R
Sbjct: 23 PEIPQCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAEKCFSRGDSVYCKDDFFKR 82
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDSR 61
+C +C + I ++R A + YH +C AC+ C LA +++L C++DY++
Sbjct: 86 KCAACQQGIPPTQVVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETA 145
Query: 62 KK 63
K+
Sbjct: 146 KQ 147
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MPNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDS 60
M + +C C + I D+++L+V D +H +C+ C +C LA CF+R +YC+ D+
Sbjct: 24 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 83
Query: 61 R 61
R
Sbjct: 84 R 84
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDSR 61
+C +C + I ++R A D YH +C AC+ C LA + +L C+ DY++
Sbjct: 88 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETA 147
Query: 62 KK 63
K+
Sbjct: 148 KQ 149
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 1 MPNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDS 60
M + +C C + I D+++L+V D +H +C+ C +C LA CF+R +YC+ D+
Sbjct: 24 MQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFK 83
Query: 61 R 61
R
Sbjct: 84 R 84
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDSR 61
+C +C + I ++R A D YH +C AC+ C LA + +L C+ DY++
Sbjct: 88 KCTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETA 147
Query: 62 KK 63
K+
Sbjct: 148 KQ 149
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
P + C C + I DR++L+V D +H C+ C +C LA CF+R + +YC+ D+ R
Sbjct: 23 PEIPLCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEKCFSRGDGVYCKEDFFKR 82
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDSR 61
+C +C + I ++R A D YH +C AC+ C LA +++L C++DY++
Sbjct: 86 KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETA 145
Query: 62 KK 63
K+
Sbjct: 146 KQ 147
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
C C + I DR++L+V D +H C+ C +C LA CF+R + +YC+ D+ R
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADKCFSRGDSVYCKDDFFKR 82
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 6 ECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLA---HSCFTRENKLYCRSDYDSR 61
+C +C + I ++R A D YH +C AC+ C LA +++L C++DY++
Sbjct: 86 KCAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETA 145
Query: 62 KK 63
K+
Sbjct: 146 KQ 147
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
C C + I DR++L+ D +H C+ C +C LA CF+R LYC+ D+ R
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESLYCKDDFFKR 70
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 ECGSC--GRPITDRYLLRVADISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDS 60
+C +C G P T + + R D YH +C ACV C LA +++L C++DY++
Sbjct: 74 KCAACQLGIPPT-QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 132
Query: 61 RKK 63
K+
Sbjct: 133 AKQ 135
>sp|Q8QFP8|LIMK1_CHICK LIM domain kinase 1 OS=Gallus gallus GN=LIMK1 PE=1 SV=1
Length = 662
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
++ C SCG+ I D L+ + +H +C C ECG SL+H + ++ +LYC+ DY +R
Sbjct: 22 DLPVCASCGQGIFDGQYLQALNADWHADCFRCGECGASLSHQYYEKDGRLYCKKDYWAR 80
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
P + C C + I DR++L+ D +H C+ C +C LA CF+R +YC+ D+ R
Sbjct: 29 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 88
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 ECGSC--GRPITDRYLLRVADISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDS 60
+C +C G P T + + R D YH +C ACV C LA +++L C++DY++
Sbjct: 92 KCAACQLGIPPT-QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 150
Query: 61 RKK 63
K+
Sbjct: 151 AKQ 153
>sp|Q8IRC7|AWH_DROME LIM/homeobox protein Awh OS=Drosophila melanogaster GN=Awh PE=1
SV=1
Length = 275
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDY 58
++ C +CG PI+DR+ L V S+H +C+ C C L SCF RE ++YC++DY
Sbjct: 4 ELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADY 61
>sp|P09088|MEC3_CAEEL Mechanosensory protein 3 OS=Caenorhabditis elegans GN=mec-3 PE=2
SV=2
Length = 321
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDY 58
N +C C I DRY+ R+ + SYHENCV C C LA CF + ++YC Y
Sbjct: 25 NQNKCNCCNEQIYDRYIYRMDNRSYHENCVKCTICESPLAEKCFWKNGRIYCSQHY 80
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
C C + I DR++L+ D +H C+ C +C LA CF+R +YC+ D+ R
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAERCFSRGESVYCKDDFFKR 85
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 6 ECGSC--GRPITDRYLLRVADISYHENCVACVECGHSLAHS---CFTRENKLYCRSDYDS 60
+C +C G P T + + R D YH +C ACV C LA +++L C++DY++
Sbjct: 89 KCAACQLGIPPT-QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 147
Query: 61 RKK 63
K+
Sbjct: 148 AKQ 150
>sp|P53405|ISL1_DANRE Insulin gene enhancer protein isl-1 OS=Danio rerio GN=isl1 PE=2
SV=1
Length = 349
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS--CFTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L S CF R+ K YC+ DY
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 18 YLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYD 59
+++R YH C CV C L RE+ L+CR+D+D
Sbjct: 91 FVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHD 134
>sp|P61374|ISL1_RAT Insulin gene enhancer protein ISL-1 OS=Rattus norvegicus GN=Isl1
PE=2 SV=1
Length = 349
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS--CFTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L S CF R+ K YC+ DY
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 YLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRKKGS 65
+++R YH C CV C L RE+ L+CR+D+D ++ S
Sbjct: 91 FVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERAS 140
>sp|P61372|ISL1_MOUSE Insulin gene enhancer protein ISL-1 OS=Mus musculus GN=Isl1 PE=1
SV=1
Length = 349
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS--CFTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L S CF R+ K YC+ DY
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 YLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRKKGS 65
+++R YH C CV C L RE+ L+CR+D+D ++ S
Sbjct: 91 FVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERAS 140
>sp|P61373|ISL1_MESAU Insulin gene enhancer protein ISL-1 OS=Mesocricetus auratus
GN=ISL1 PE=2 SV=1
Length = 349
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS--CFTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L S CF R+ K YC+ DY
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 YLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRKKGS 65
+++R YH C CV C L RE+ L+CR+D+D ++ S
Sbjct: 91 FVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERAS 140
>sp|P61371|ISL1_HUMAN Insulin gene enhancer protein ISL-1 OS=Homo sapiens GN=ISL1 PE=1
SV=1
Length = 349
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHS--CFTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L S CF R+ K YC+ DY
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDY 71
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 YLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRKKGS 65
+++R YH C CV C L RE+ L+CR+D+D ++ S
Sbjct: 91 FVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERAS 140
>sp|P53407|ISL2B_DANRE Insulin gene enhancer protein isl-2b OS=Danio rerio GN=isl2b PE=2
SV=1
Length = 358
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAH--SCFTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ CVEC L +CF R+ K YC+ DY
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCVECNQYLDETCTCFVRDGKTYCKRDY 81
>sp|P53408|ISL2A_ONCTS Insulin gene enhancer protein ISL-2A OS=Oncorhynchus tschawytscha
GN=isl2a PE=2 SV=1
Length = 358
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
C CG I D+Y+LRVA D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 27 CVGCGSQIHDQYILRVAPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>sp|P29673|APTE_DROME Protein apterous OS=Drosophila melanogaster GN=ap PE=2 SV=1
Length = 469
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH--SCFTRENKLYCRSDY 58
N+ +C CGR I DR+ L + +H +C+ C C L SC++R+ +YC++DY
Sbjct: 144 NLDDCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDY 201
>sp|P50211|ISL1_CHICK Insulin gene enhancer protein ISL-1 OS=Gallus gallus GN=ISL1 PE=2
SV=1
Length = 349
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDY 71
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 18 YLLRVADISYHENCVACVECGHSL--AHSCFTRENKLYCRSDYDSRKKGS 65
+++R YH C CV C L RE+ L+CR+D+D ++ S
Sbjct: 91 FVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERAS 140
>sp|P50480|ISL2_RAT Insulin gene enhancer protein ISL-2 OS=Rattus norvegicus GN=Isl2
PE=1 SV=1
Length = 360
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 2 PNMKECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
P C CG I D+++LRV+ D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>sp|P50212|ISL2B_ONCTS Insulin gene enhancer protein ISL-2B (Fragment) OS=Oncorhynchus
tschawytscha GN=isl2b PE=2 SV=1
Length = 340
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
C CG I D+Y+LRVA D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 9 CVGCGSQIHDQYILRVAPDLEWHAACLKCSECSQYLDETCTCFVRDGKTYCKRDY 63
>sp|Q9CXV0|ISL2_MOUSE Insulin gene enhancer protein ISL-2 OS=Mus musculus GN=Isl2 PE=1
SV=2
Length = 359
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 2 PNMKECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
P C CG I D+++LRV+ D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>sp|Q96A47|ISL2_HUMAN Insulin gene enhancer protein ISL-2 OS=Homo sapiens GN=ISL2 PE=1
SV=1
Length = 359
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 2 PNMKECGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
P C CG I D+++LRV+ D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>sp|P53409|ISL3_ONCTS Insulin gene enhancer protein ISL-3 OS=Oncorhynchus tschawytscha
GN=isl3 PE=2 SV=1
Length = 363
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>sp|P20154|LIN11_CAEEL Protein lin-11 OS=Caenorhabditis elegans GN=lin-11 PE=1 SV=2
Length = 405
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 6 ECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSR 61
EC +C +PI DRY+ V +H++C+ C +C ++ +CF+R+ + C++D+ R
Sbjct: 67 ECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPMSMTCFSRDGLILCKTDFSRR 122
>sp|P53406|ISL2A_DANRE Insulin gene enhancer protein isl-2a OS=Danio rerio GN=isl2a PE=2
SV=1
Length = 359
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 7 CGSCGRPITDRYLLRVA-DISYHENCVACVECGHSLAHSC--FTRENKLYCRSDY 58
C CG I D+Y+LRV+ D+ +H C+ C EC L +C F R+ K YC+ DY
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDY 81
>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
Length = 388
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 7 CGSCGRPITDRYLLRVADISYHENCVACVECGHSLAH--SCFTRENKLYCRSDYDSR 61
C CG I+DRY L D +H C+ C EC +L +CF ++ +YC+ DY R
Sbjct: 62 CAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRR 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,038,181
Number of Sequences: 539616
Number of extensions: 1380730
Number of successful extensions: 4912
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 4491
Number of HSP's gapped (non-prelim): 495
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)