Query psy15439
Match_columns 124
No_of_seqs 164 out of 1299
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:05:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 99.9 7.5E-26 2.6E-30 161.1 7.5 122 3-124 6-187 (192)
2 2xjy_A Rhombotin-2; oncoprotei 99.9 1.1E-22 3.6E-27 136.4 5.4 110 4-113 2-129 (131)
3 1rut_X Flinc4, fusion protein 99.9 2E-22 6.7E-27 143.0 6.9 118 3-120 4-139 (188)
4 2xqn_T Testin, TESS; metal-bin 99.9 1.5E-22 5.2E-27 134.9 5.4 109 4-112 3-126 (126)
5 2rgt_A Fusion of LIM/homeobox 99.8 2.3E-22 8E-27 140.4 3.3 115 2-116 4-132 (169)
6 2jtn_A LIM domain-binding prot 99.8 4E-21 1.4E-25 135.6 5.9 109 2-110 58-180 (182)
7 2cup_A Skeletal muscle LIM-pro 99.8 1.3E-19 4.5E-24 116.3 5.9 87 2-88 3-100 (101)
8 1m3v_A FLIN4, fusion of the LI 99.8 1.4E-19 4.9E-24 120.2 4.1 106 3-114 4-117 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 3.6E-18 1.2E-22 112.2 6.1 102 3-114 2-109 (114)
10 2dj7_A Actin-binding LIM prote 99.7 3.5E-17 1.2E-21 101.3 6.4 63 3-65 14-76 (80)
11 1iml_A CRIP, cysteine rich int 99.7 1.5E-16 5.1E-21 97.2 5.4 66 5-70 1-70 (76)
12 1x62_A C-terminal LIM domain p 99.6 9.1E-17 3.1E-21 99.0 4.1 64 2-66 13-77 (79)
13 1nyp_A Pinch protein; LIM doma 99.6 1.1E-16 3.8E-21 95.2 4.0 62 3-65 4-66 (66)
14 1x64_A Alpha-actinin-2 associa 99.6 3.2E-16 1.1E-20 98.6 5.8 64 2-66 23-87 (89)
15 1a7i_A QCRP2 (LIM1); LIM domai 99.6 2.3E-16 7.8E-21 97.5 5.1 63 3-65 6-69 (81)
16 2cu8_A Cysteine-rich protein 2 99.6 4.1E-16 1.4E-20 95.2 5.9 63 3-65 8-72 (76)
17 1x4l_A Skeletal muscle LIM-pro 99.6 3.2E-16 1.1E-20 94.7 5.2 63 3-65 4-70 (72)
18 2d8x_A Protein pinch; LIM doma 99.6 4.4E-16 1.5E-20 93.6 5.7 62 3-65 4-66 (70)
19 2cur_A Skeletal muscle LIM-pro 99.6 4.4E-16 1.5E-20 93.4 5.5 63 2-65 3-66 (69)
20 2d8y_A Eplin protein; LIM doma 99.6 2.9E-16 9.8E-21 99.1 4.8 66 1-66 12-78 (91)
21 1g47_A Pinch protein; LIM doma 99.6 7E-16 2.4E-20 94.2 5.7 64 2-65 9-74 (77)
22 3f6q_B LIM and senescent cell 99.6 5.6E-16 1.9E-20 93.2 5.2 62 2-63 9-72 (72)
23 1x4k_A Skeletal muscle LIM-pro 99.6 7.3E-16 2.5E-20 93.0 5.6 63 3-65 4-68 (72)
24 2d8z_A Four and A half LIM dom 99.6 6.6E-16 2.3E-20 92.8 5.0 62 3-65 4-66 (70)
25 1x68_A FHL5 protein; four-and- 99.6 6.5E-16 2.2E-20 94.4 5.0 62 4-65 5-70 (76)
26 1wyh_A SLIM 2, skeletal muscle 99.6 6.4E-16 2.2E-20 93.2 4.8 63 3-65 4-68 (72)
27 2dar_A PDZ and LIM domain prot 99.6 1E-15 3.5E-20 96.4 5.7 62 3-65 24-86 (90)
28 1x61_A Thyroid receptor intera 99.6 6.4E-16 2.2E-20 93.3 4.6 62 2-63 3-66 (72)
29 2l4z_A DNA endonuclease RBBP8, 99.6 6E-16 2E-20 103.1 4.7 60 4-63 61-123 (123)
30 2cor_A Pinch protein; LIM doma 99.6 6.9E-16 2.4E-20 95.1 4.2 62 3-65 14-75 (79)
31 2co8_A NEDD9 interacting prote 99.6 9.3E-16 3.2E-20 95.2 3.4 62 3-64 14-78 (82)
32 1x3h_A Leupaxin; paxillin fami 99.6 2.4E-15 8.3E-20 92.5 5.2 61 4-65 15-76 (80)
33 1x63_A Skeletal muscle LIM-pro 99.6 3.4E-15 1.2E-19 92.2 5.8 63 4-66 15-79 (82)
34 2cuq_A Four and A half LIM dom 99.6 3.3E-15 1.1E-19 91.8 4.9 61 4-65 15-76 (80)
35 2dlo_A Thyroid receptor-intera 99.5 5.7E-15 1.9E-19 91.1 5.4 62 3-65 14-77 (81)
36 2ehe_A Four and A half LIM dom 99.5 2.2E-15 7.6E-20 93.1 3.4 62 4-65 15-78 (82)
37 1wig_A KIAA1808 protein; LIM d 99.5 4.6E-15 1.6E-19 90.1 4.6 61 3-64 4-66 (73)
38 2egq_A FHL1 protein; LIM domai 99.5 1E-14 3.6E-19 89.0 5.3 57 4-60 15-76 (77)
39 2iyb_E Testin, TESS, TES; LIM 99.5 1.3E-14 4.5E-19 86.1 4.2 58 4-61 2-64 (65)
40 1b8t_A Protein (CRP1); LIM dom 99.5 2.3E-14 7.8E-19 101.6 5.3 69 4-72 115-186 (192)
41 1x6a_A LIMK-2, LIM domain kina 99.5 3E-14 1E-18 87.7 3.5 61 4-65 15-78 (81)
42 2l3k_A Rhombotin-2, linker, LI 99.4 2.7E-13 9.2E-18 89.9 3.1 60 5-64 9-71 (123)
43 1v6g_A Actin binding LIM prote 99.3 8E-13 2.7E-17 81.4 4.6 61 4-65 15-77 (81)
44 2ehe_A Four and A half LIM dom 99.3 1E-12 3.5E-17 81.0 3.2 69 49-117 1-81 (82)
45 2xqn_T Testin, TESS; metal-bin 99.3 3.8E-12 1.3E-16 84.3 5.4 59 4-62 63-125 (126)
46 2xjy_A Rhombotin-2; oncoprotei 99.3 2.5E-12 8.5E-17 85.6 3.9 59 6-64 68-129 (131)
47 2dlo_A Thyroid receptor-intera 99.2 1.6E-12 5.6E-17 79.9 1.2 68 49-117 2-80 (81)
48 2cuq_A Four and A half LIM dom 99.2 2.6E-12 9E-17 78.7 1.9 69 49-117 1-79 (80)
49 1rut_X Flinc4, fusion protein 99.2 7.7E-12 2.6E-16 88.3 4.3 60 6-65 71-133 (188)
50 1x3h_A Leupaxin; paxillin fami 99.2 3.4E-12 1.2E-16 78.2 0.9 69 49-117 1-79 (80)
51 1x63_A Skeletal muscle LIM-pro 99.1 2.4E-11 8.1E-16 74.7 2.2 69 49-117 1-81 (82)
52 2rgt_A Fusion of LIM/homeobox 99.1 7.7E-11 2.6E-15 81.8 4.7 60 4-63 65-128 (169)
53 1x6a_A LIMK-2, LIM domain kina 99.0 3.1E-11 1.1E-15 74.1 1.1 69 49-117 1-81 (81)
54 2jtn_A LIM domain-binding prot 99.0 2.4E-10 8.3E-15 80.1 4.8 58 4-61 119-180 (182)
55 2cup_A Skeletal muscle LIM-pro 98.8 1.6E-09 5.5E-14 68.8 2.0 54 70-123 21-77 (101)
56 2egq_A FHL1 protein; LIM domai 98.6 2.9E-09 1E-13 64.4 -0.2 62 49-110 1-77 (77)
57 1a7i_A QCRP2 (LIM1); LIM domai 98.6 8E-09 2.7E-13 63.1 1.6 53 71-123 23-78 (81)
58 1m3v_A FLIN4, fusion of the LI 98.6 2.4E-09 8.2E-14 70.5 -0.9 53 71-123 21-80 (122)
59 1iml_A CRIP, cysteine rich int 98.6 1.4E-08 4.7E-13 61.3 2.3 54 70-123 15-72 (76)
60 1x68_A FHL5 protein; four-and- 98.5 8.4E-08 2.9E-12 57.9 3.5 50 70-119 23-75 (76)
61 2dj7_A Actin-binding LIM prote 98.4 6.7E-08 2.3E-12 59.1 1.2 47 71-117 31-79 (80)
62 1wyh_A SLIM 2, skeletal muscle 98.4 8.2E-08 2.8E-12 57.1 1.1 48 70-117 21-71 (72)
63 2cur_A Skeletal muscle LIM-pro 98.4 7E-08 2.4E-12 57.1 0.6 47 71-117 20-69 (69)
64 1v6g_A Actin binding LIM prote 98.3 2.9E-07 9.8E-12 56.1 2.9 64 50-113 2-76 (81)
65 2d8z_A Four and A half LIM dom 98.3 7.8E-08 2.7E-12 57.0 0.2 47 71-117 20-69 (70)
66 2dar_A PDZ and LIM domain prot 98.3 1.2E-07 4.1E-12 59.0 1.0 48 70-117 39-89 (90)
67 2cu8_A Cysteine-rich protein 2 98.3 2E-07 6.7E-12 56.2 1.1 47 71-117 25-75 (76)
68 1x4k_A Skeletal muscle LIM-pro 98.3 2.1E-07 7.2E-12 55.3 1.1 48 70-117 21-71 (72)
69 2cor_A Pinch protein; LIM doma 98.2 1.5E-07 5.1E-12 57.4 0.3 48 70-117 29-78 (79)
70 1x64_A Alpha-actinin-2 associa 98.1 5.8E-07 2E-11 55.8 1.2 48 70-117 39-89 (89)
71 1j2o_A FLIN2, fusion of rhombo 98.1 2.9E-07 9.8E-12 59.8 -0.4 50 70-119 18-72 (114)
72 1zfo_A LAsp-1; LIM domain, zin 98.0 8.7E-07 3E-11 44.8 0.7 29 4-32 3-31 (31)
73 2l3k_A Rhombotin-2, linker, LI 98.0 7.8E-07 2.7E-11 58.4 0.5 53 70-122 24-80 (123)
74 2d8y_A Eplin protein; LIM doma 98.0 4.1E-07 1.4E-11 56.7 -0.9 52 71-123 31-85 (91)
75 1g47_A Pinch protein; LIM doma 98.0 6.1E-07 2.1E-11 53.9 -0.5 46 71-116 28-76 (77)
76 1x4l_A Skeletal muscle LIM-pro 97.9 2E-06 7E-11 51.0 0.8 47 70-116 23-72 (72)
77 1nyp_A Pinch protein; LIM doma 97.9 2.1E-06 7.2E-11 50.1 0.1 45 70-114 19-66 (66)
78 2co8_A NEDD9 interacting prote 97.8 4.9E-06 1.7E-10 50.8 1.7 47 71-117 31-82 (82)
79 2d8x_A Protein pinch; LIM doma 97.8 4.3E-06 1.5E-10 49.3 0.2 48 70-117 19-69 (70)
80 1x62_A C-terminal LIM domain p 97.8 2.3E-06 7.9E-11 51.8 -1.0 48 70-117 29-79 (79)
81 1x61_A Thyroid receptor intera 97.5 1.9E-05 6.5E-10 46.7 0.6 48 70-118 21-71 (72)
82 3f6q_B LIM and senescent cell 97.2 5.4E-05 1.9E-09 44.3 -0.2 43 70-112 27-72 (72)
83 1wig_A KIAA1808 protein; LIM d 97.1 7.9E-05 2.7E-09 44.3 0.4 45 70-114 19-67 (73)
84 2l4z_A DNA endonuclease RBBP8, 96.6 0.00013 4.4E-09 47.9 -2.1 43 70-112 76-123 (123)
85 2iyb_E Testin, TESS, TES; LIM 96.2 0.00078 2.7E-08 38.9 -0.1 41 70-110 18-64 (65)
86 2lo3_A SAGA-associated factor 80.6 0.46 1.6E-05 25.1 0.6 11 114-124 19-29 (44)
87 2eqg_A Tumor necrosis factor, 73.7 1.3 4.4E-05 23.6 1.1 20 44-63 21-40 (49)
88 1jjd_A Metallothionein, SMTA; 73.0 2.6 8.9E-05 23.5 2.3 31 33-63 9-41 (55)
89 2gvi_A Conserved hypothetical 51.7 5 0.00017 28.0 1.1 30 31-60 172-202 (204)
90 3mhs_E SAGA-associated factor 51.1 3.1 0.0001 25.8 -0.1 11 114-124 77-87 (96)
91 3j21_V 50S ribosomal protein L 41.0 15 0.00052 21.1 1.8 28 1-28 1-31 (66)
92 1weo_A Cellulose synthase, cat 36.9 18 0.00063 22.1 1.8 10 50-59 42-51 (93)
93 4g1a_A AQ-C16C19 peptide; heli 35.0 0.75 2.6E-05 22.0 -3.7 12 111-122 12-23 (32)
94 2dmj_A Poly (ADP-ribose) polym 33.4 20 0.00069 22.2 1.7 14 4-17 25-38 (106)
95 1t1h_A Gspef-atpub14, armadill 31.1 48 0.0016 18.4 3.0 33 30-62 7-39 (78)
96 1v9x_A Poly (ADP-ribose) polym 30.9 20 0.0007 22.7 1.4 15 3-17 19-33 (114)
97 1chc_A Equine herpes virus-1 r 30.6 28 0.00097 18.8 1.9 29 4-32 5-33 (68)
98 2ct0_A Non-SMC element 1 homol 30.6 13 0.00044 21.6 0.4 29 4-32 15-43 (74)
99 3nw0_A Non-structural maintena 26.4 18 0.00061 25.8 0.6 29 4-32 180-208 (238)
100 2kgo_A Uncharacterized protein 26.0 23 0.0008 22.3 1.0 11 113-123 57-67 (108)
101 3iz5_i 60S ribosomal protein L 25.9 28 0.00095 22.4 1.4 12 112-123 41-52 (119)
102 2ecg_A Baculoviral IAP repeat- 25.1 47 0.0016 18.5 2.2 42 32-73 26-68 (75)
103 2ysl_A Tripartite motif-contai 24.6 53 0.0018 17.9 2.3 32 31-62 20-51 (73)
104 2ect_A Ring finger protein 126 23.9 99 0.0034 17.0 3.7 11 5-15 16-26 (78)
105 3j21_d 50S ribosomal protein L 23.2 31 0.0011 20.9 1.1 12 112-123 33-44 (89)
106 1tjl_A DNAK suppressor protein 22.5 29 0.00098 23.0 1.0 11 113-123 112-122 (151)
107 2ecw_A Tripartite motif-contai 22.5 66 0.0023 17.8 2.6 30 31-60 19-48 (85)
108 3odc_A Poly [ADP-ribose] polym 22.3 26 0.0009 22.0 0.7 14 3-16 18-31 (111)
109 2ecy_A TNF receptor-associated 21.5 49 0.0017 17.8 1.7 32 31-62 15-46 (66)
110 2kq9_A DNAK suppressor protein 21.4 17 0.00058 22.8 -0.3 11 113-123 82-92 (112)
111 3u5e_g 60S ribosomal protein L 21.3 34 0.0012 22.0 1.1 12 112-123 41-52 (121)
112 2d8v_A Zinc finger FYVE domain 21.3 42 0.0014 19.3 1.4 18 44-61 21-38 (67)
113 4ic3_A E3 ubiquitin-protein li 21.2 63 0.0021 18.0 2.2 42 32-73 25-67 (74)
114 3od8_A Poly [ADP-ribose] polym 20.4 27 0.00094 22.2 0.5 15 3-17 37-51 (116)
115 2ecm_A Ring finger and CHY zin 20.4 61 0.0021 16.4 1.9 13 4-16 5-17 (55)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.92 E-value=7.5e-26 Score=161.06 Aligned_cols=122 Identities=15% Similarity=0.241 Sum_probs=103.1
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC----------------
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS---------------- 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~---------------- 65 (124)
+.++|.+|+++|...+.+.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+++
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 3468999999998766789999999999999999999999 56889999999999999998643
Q ss_pred ----------------------------------Cceeee------cccCeeeccCcEEeeee--CCCCee-EeEeCcEE
Q psy15439 66 ----------------------------------QLVTVL------FYSMYVHSVMKFHTITL--PLHTIT-IRIQVTII 102 (124)
Q Consensus 66 ----------------------------------~c~~~i------~~~~~~~h~~cf~c~~~--~~~~~~-~~~~~~~~ 102 (124)
+|.+.| .+.+..||..||.|..+ +|.+.. +..++.+|
T Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~y 165 (192)
T 1b8t_A 86 ESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIY 165 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEE
T ss_pred cccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEe
Confidence 455544 35567899999999885 464433 45668999
Q ss_pred EcccCccccCCCCCCCCCCccC
Q psy15439 103 IIRNLSSLLAQPCTDSSRPIPV 124 (124)
Q Consensus 103 ~~~~~~~~~a~~c~~c~~~i~~ 124 (124)
|.+|+.++|+++|.+|+++||+
T Consensus 166 C~~cy~~~f~~kc~~C~~~~g~ 187 (192)
T 1b8t_A 166 CKGCYAKNFGPKGFGFGQGAGA 187 (192)
T ss_dssp EHHHHHHHTCCCCCCCCCCCCC
T ss_pred CHHHHHHhcCCcCCCCCCcccc
Confidence 9999999999999999999985
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.87 E-value=1.1e-22 Score=136.44 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=92.6
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC---CceeeeCCeecccchhhhhcC----CCCceeee-----
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA---HSCFTRENKLYCRSDYDSRKK----GSQLVTVL----- 71 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~---~~~~~~~g~~yC~~~y~~~f~----~~~c~~~i----- 71 (124)
.++|.+|+++|.+++++.++++.||++||+|..|+.+|. ..|+.++|++||+.||.++|+ |..|.+.|
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 578999999999987789999999999999999999996 478999999999999999986 45665544
Q ss_pred --cccCeeeccCcEEeeeeC--C-CCee-EeEeCcEEEcccCccccCC
Q psy15439 72 --FYSMYVHSVMKFHTITLP--L-HTIT-IRIQVTIIIIRNLSSLLAQ 113 (124)
Q Consensus 72 --~~~~~~~h~~cf~c~~~~--~-~~~~-~~~~~~~~~~~~~~~~~a~ 113 (124)
.+.+.+||..||.|..+. | .+.. +..++++||.+++.++||+
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred eEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 456778999999998853 5 3443 3456899999999999985
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.87 E-value=2e-22 Score=143.01 Aligned_cols=118 Identities=25% Similarity=0.379 Sum_probs=93.3
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC---CceeeeCCeecccchhhhhcC----CCCceeee----
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA---HSCFTRENKLYCRSDYDSRKK----GSQLVTVL---- 71 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~---~~~~~~~g~~yC~~~y~~~f~----~~~c~~~i---- 71 (124)
..++|.+|+++|.+.+++.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+ |..|.+.|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc
Confidence 4678999999999887789999999999999999999997 378999999999999999987 45665544
Q ss_pred ---cccCeeeccCcEEeeeeC--CC-CeeE-eEeCcEEEcccCccccCCCCCCCCC
Q psy15439 72 ---FYSMYVHSVMKFHTITLP--LH-TITI-RIQVTIIIIRNLSSLLAQPCTDSSR 120 (124)
Q Consensus 72 ---~~~~~~~h~~cf~c~~~~--~~-~~~~-~~~~~~~~~~~~~~~~a~~c~~c~~ 120 (124)
.+.+.+||..||.|..+. |. +..+ ..++.+||.+++.++|+++|.+.+.
T Consensus 84 ~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 84 LVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp EEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred EEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 455678999999998863 53 4444 4568899999999999999987654
No 4
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=134.94 Aligned_cols=109 Identities=13% Similarity=0.215 Sum_probs=92.4
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcC--CCCceeeec-------c
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKK--GSQLVTVLF-------Y 73 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~--~~~c~~~i~-------~ 73 (124)
.++|.+|+++|.+++.+.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+ |.+|.+.|. +
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a 82 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTY 82 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEE
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEEC
Confidence 578999999999776789999999999999999999999 578899999999999999997 556655444 5
Q ss_pred cCeeec--cCcEEeeee--CCCCeeEe-EeCcEEEcccCccccC
Q psy15439 74 SMYVHS--VMKFHTITL--PLHTITIR-IQVTIIIIRNLSSLLA 112 (124)
Q Consensus 74 ~~~~~h--~~cf~c~~~--~~~~~~~~-~~~~~~~~~~~~~~~a 112 (124)
.+..|| +.||.|..+ +|.+..+. .++.+||.+++.++|.
T Consensus 83 ~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f~ 126 (126)
T 2xqn_T 83 NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 126 (126)
T ss_dssp TTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSCC
T ss_pred CCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhcC
Confidence 567899 999999885 46666654 4689999989888874
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.85 E-value=2.3e-22 Score=140.40 Aligned_cols=115 Identities=21% Similarity=0.457 Sum_probs=93.3
Q ss_pred CCCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCCCceeeeCCeecccchhhhhcC--CCCceeee-------c
Q psy15439 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSRKK--GSQLVTVL-------F 72 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f~--~~~c~~~i-------~ 72 (124)
++.++|.+|+++|.+++++.++++.||++||+|..|+++|.+..|.++|++||+.||.++|+ |..|.+.| .
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~ 83 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 83 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEE
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEE
Confidence 56789999999999987789999999999999999999999666789999999999999998 55676544 4
Q ss_pred ccCeeeccCcEEeeeeC--CC-CeeE--eEeCcEEEcccCccccCCCCC
Q psy15439 73 YSMYVHSVMKFHTITLP--LH-TITI--RIQVTIIIIRNLSSLLAQPCT 116 (124)
Q Consensus 73 ~~~~~~h~~cf~c~~~~--~~-~~~~--~~~~~~~~~~~~~~~~a~~c~ 116 (124)
+.+..||..||.|..+. |. +..+ ..++++||..++.++++..+.
T Consensus 84 a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~ 132 (169)
T 2rgt_A 84 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSG 132 (169)
T ss_dssp ETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC--
T ss_pred cCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCC
Confidence 55678999999998864 54 4443 336789999999999987663
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.83 E-value=4e-21 Score=135.57 Aligned_cols=109 Identities=22% Similarity=0.499 Sum_probs=90.1
Q ss_pred CCCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCCCceeeeCCeecccchhhhhcC--CCCceeeec-------
Q psy15439 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSRKK--GSQLVTVLF------- 72 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f~--~~~c~~~i~------- 72 (124)
++.++|.+|+++|.+.+++.++++.||++||+|..|+++|....|.++|++||+.||.++|+ |..|.+.|.
T Consensus 58 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~ 137 (182)
T 2jtn_A 58 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRR 137 (182)
T ss_dssp CSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCE
T ss_pred CCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEEe
Confidence 35689999999999987789999999999999999999999656789999999999999997 556766553
Q ss_pred ccCeeeccCcEEeeeeC--CC-CeeE--eEeCcEEEcccCccc
Q psy15439 73 YSMYVHSVMKFHTITLP--LH-TITI--RIQVTIIIIRNLSSL 110 (124)
Q Consensus 73 ~~~~~~h~~cf~c~~~~--~~-~~~~--~~~~~~~~~~~~~~~ 110 (124)
+.+..||..||.|..+. |. +..+ ..++++||..+|.++
T Consensus 138 a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 138 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp ETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred cCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 45678999999998864 54 4443 335789999998765
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.79 E-value=1.3e-19 Score=116.27 Aligned_cols=87 Identities=20% Similarity=0.398 Sum_probs=74.1
Q ss_pred CCCCCCCCCCccccC-CccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcC--CCCceeeec-----
Q psy15439 2 PNMKECGSCGRPITD-RYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKK--GSQLVTVLF----- 72 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~-~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~--~~~c~~~i~----- 72 (124)
.+.++|.+|+++|.. ++++.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+ +.+|.+.|.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~ 82 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQN 82 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCE
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeE
Confidence 356889999999974 66789999999999999999999998 578899999999999999997 556655544
Q ss_pred --ccCeeeccCcEEeeee
Q psy15439 73 --YSMYVHSVMKFHTITL 88 (124)
Q Consensus 73 --~~~~~~h~~cf~c~~~ 88 (124)
+.+.+||..||.|..+
T Consensus 83 ~~a~~~~~H~~CF~C~~C 100 (101)
T 2cup_A 83 VEYKGTVWHKDCFSGPSS 100 (101)
T ss_dssp EESSSCEEETTTCCCTTC
T ss_pred EEeCCcchHHhCCCCCCC
Confidence 4566899999999764
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.4e-19 Score=120.22 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=87.9
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC---CceeeeCCeecccchhhhhcC----CCCceeeecccC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA---HSCFTRENKLYCRSDYDSRKK----GSQLVTVLFYSM 75 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~---~~~~~~~g~~yC~~~y~~~f~----~~~c~~~i~~~~ 75 (124)
..++|.+|+++|.+.+++.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+ |..|.+.|...+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 5689999999999987789999999999999999999996 478999999999999999996 457888888766
Q ss_pred eeeccCcEEeeeeCCCCeeEe-EeCcEEEcccCccccCCC
Q psy15439 76 YVHSVMKFHTITLPLHTITIR-IQVTIIIIRNLSSLLAQP 114 (124)
Q Consensus 76 ~~~h~~cf~c~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~ 114 (124)
++.... .++.+..+. .++.+||.+++..+++.+
T Consensus 84 ~~~~g~------~~l~g~~f~~~~~~~yC~~~~~~~~~~~ 117 (122)
T 1m3v_A 84 VMVVGE------PTLMGGEFGDEDERLITRLENTQFDAAN 117 (122)
T ss_dssp SSSSSS------SSCCSCTTCCTTCCCCEECTTTTTTCCS
T ss_pred eEEcCC------cCCCCCccEecCCEeEccCcchhchhhc
Confidence 655432 245565544 457899999999998763
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.6e-18 Score=112.19 Aligned_cols=102 Identities=24% Similarity=0.374 Sum_probs=81.1
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC---CceeeeCCeecccchhhhhcCCC--CceeeecccCee
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA---HSCFTRENKLYCRSDYDSRKKGS--QLVTVLFYSMYV 77 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~---~~~~~~~g~~yC~~~y~~~f~~~--~c~~~i~~~~~~ 77 (124)
+.++|.+|+++|.+.+.+.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+++ .|.. +.+
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~-----~~~ 76 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG-----GDV 76 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS-----CSC
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC-----Cce
Confidence 4578999999999987889999999999999999999997 37899999999999999999965 3421 111
Q ss_pred eccCcEEeeeeCCCCeeEe-EeCcEEEcccCccccCCC
Q psy15439 78 HSVMKFHTITLPLHTITIR-IQVTIIIIRNLSSLLAQP 114 (124)
Q Consensus 78 ~h~~cf~c~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~ 114 (124)
+ +|....+.+..+. .++++||..++..+.++.
T Consensus 77 ~-----~~~~~~~~g~~f~~~~~~~~C~~~~~~~~~~~ 109 (114)
T 1j2o_A 77 M-----VVGEPTLMGGEFGDEDERLITRLENTQFDAAN 109 (114)
T ss_dssp C-----CSSCSSTTSSBCCCSSSCCCEEEECTTCCCTT
T ss_pred e-----EcCCccCCCCeeEEcCCEeecchhhhcccccc
Confidence 1 2334445565554 568899999999888763
No 10
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=3.5e-17 Score=101.30 Aligned_cols=63 Identities=24% Similarity=0.549 Sum_probs=58.1
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCCCceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
+.++|.+|+++|.+.+.+.++++.||++||+|..|+++|...|+.+++++||+.||.++|+.+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~fg~~ 76 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGSG 76 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHHTTCC
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHHcCCC
Confidence 467899999999976678999999999999999999999977899999999999999999865
No 11
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.5e-16 Score=97.20 Aligned_cols=66 Identities=20% Similarity=0.408 Sum_probs=58.3
Q ss_pred CCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeeccc-chhhhhcCC--CCceee
Q psy15439 5 KECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCR-SDYDSRKKG--SQLVTV 70 (124)
Q Consensus 5 ~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~-~~y~~~f~~--~~c~~~ 70 (124)
|+|.+|+++|.+.+.+.++++.||++||+|..|+++|. ..++.++|++||+ .||.++|++ .+|.++
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~ 70 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCc
Confidence 57999999999666789999999999999999999999 6788999999999 799999984 456544
No 12
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=9.1e-17 Score=98.97 Aligned_cols=64 Identities=27% Similarity=0.693 Sum_probs=58.6
Q ss_pred CCCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCCC
Q psy15439 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGSQ 66 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~~ 66 (124)
++.++|.+|+++|.+. .+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|++++
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g 77 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCC
T ss_pred CCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 5678999999999986 689999999999999999999998 578899999999999999998764
No 13
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.64 E-value=1.1e-16 Score=95.21 Aligned_cols=62 Identities=24% Similarity=0.651 Sum_probs=56.3
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
..++|++|+++|.+. .+.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CCCCCcccCCEecce-EEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 467899999999955 688999999999999999999998 68899999999999999999863
No 14
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.2e-16 Score=98.55 Aligned_cols=64 Identities=28% Similarity=0.672 Sum_probs=57.9
Q ss_pred CCCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCCC
Q psy15439 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGSQ 66 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~~ 66 (124)
+..++|.+|++.|.+. .+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++.
T Consensus 23 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~ 87 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87 (89)
T ss_dssp CSCCBCTTTCCBCCSC-CEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCC
T ss_pred CcCCCcccCCCEeccc-EEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCC
Confidence 4557899999999985 689999999999999999999999 578999999999999999998763
No 15
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.63 E-value=2.3e-16 Score=97.46 Aligned_cols=63 Identities=24% Similarity=0.623 Sum_probs=55.5
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
+.++|.+|+++|.+.+.+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC--
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCc
Confidence 4688999999998766789999999999999999999999 56889999999999999999854
No 16
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=4.1e-16 Score=95.22 Aligned_cols=63 Identities=16% Similarity=0.420 Sum_probs=57.3
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeeccc-chhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCR-SDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~-~~y~~~f~~~ 65 (124)
..++|.+|+++|.+.+.+.++++.||++||+|..|+++|. ..++.+++++||+ .||.++|+++
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~k 72 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSG 72 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSS
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccc
Confidence 3578999999999766789999999999999999999999 6788999999999 7999999865
No 17
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.2e-16 Score=94.73 Aligned_cols=63 Identities=21% Similarity=0.532 Sum_probs=56.6
Q ss_pred CCCCCCCCCccccC---CccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITD---RYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~---~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
+.++|.+|+++|.+ ..++.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~ 70 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPS 70 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSS
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCC
Confidence 56889999999986 45789999999999999999999999 66778999999999999999864
No 18
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=4.4e-16 Score=93.59 Aligned_cols=62 Identities=24% Similarity=0.537 Sum_probs=56.1
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
+.++|.+|+++|.+. .+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+..
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~ 66 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66 (70)
T ss_dssp CSSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCC
T ss_pred CCCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCC
Confidence 467899999999975 689999999999999999999999 56778999999999999998854
No 19
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=4.4e-16 Score=93.37 Aligned_cols=63 Identities=27% Similarity=0.613 Sum_probs=57.2
Q ss_pred CCCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 2 PNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
.+.++|.+|+++|.++ .+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 66 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGP 66 (69)
T ss_dssp CCCCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCS
T ss_pred CCcCCCcccCCEeCcc-eEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCC
Confidence 3568999999999876 689999999999999999999998 67889999999999999999864
No 20
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.9e-16 Score=99.13 Aligned_cols=66 Identities=18% Similarity=0.496 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCCC
Q psy15439 1 MPNMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGSQ 66 (124)
Q Consensus 1 ~~~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~~ 66 (124)
+++.++|.+|++.|.+.+.+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc 78 (91)
T 2d8y_A 12 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKG 78 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCS
T ss_pred CCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCc
Confidence 356789999999999866789999999999999999999999 568899999999999999999763
No 21
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7e-16 Score=94.19 Aligned_cols=64 Identities=19% Similarity=0.462 Sum_probs=56.9
Q ss_pred CCCCCCCCCCccccC-CccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 2 PNMKECGSCGRPITD-RYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~-~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
...++|.+|+++|.+ +.++.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+++
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~ 74 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPC 74 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcc
Confidence 356889999999985 44578999999999999999999998 67889999999999999999864
No 22
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.61 E-value=5.6e-16 Score=93.18 Aligned_cols=62 Identities=19% Similarity=0.491 Sum_probs=55.6
Q ss_pred CCCCCCCCCCccccCCc-cEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcC
Q psy15439 2 PNMKECGSCGRPITDRY-LLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKK 63 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~~-~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~ 63 (124)
+..++|.+|+++|.+.+ ++.++++.||++||+|..|+++|. ..++.++|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46789999999999655 468999999999999999999998 568899999999999999885
No 23
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=7.3e-16 Score=92.97 Aligned_cols=63 Identities=21% Similarity=0.573 Sum_probs=56.9
Q ss_pred CCCCCCCCCccccCC-ccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDR-YLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~-~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
-.++|.+|+++|.+. .++.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASG 68 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCC
Confidence 357899999999975 4789999999999999999999999 67889999999999999999864
No 24
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.6e-16 Score=92.75 Aligned_cols=62 Identities=21% Similarity=0.530 Sum_probs=56.7
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
..++|.+|+++|.++ .+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 66 (70)
T 2d8z_A 4 GSSGCVQCKKPITTG-GVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASG 66 (70)
T ss_dssp CCCBCSSSCCBCCSS-EEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCC
T ss_pred CCCCCcccCCeeccc-eEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccc
Confidence 467899999999976 489999999999999999999998 67889999999999999999865
No 25
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.5e-16 Score=94.39 Aligned_cols=62 Identities=21% Similarity=0.576 Sum_probs=56.1
Q ss_pred CCCCCCCCccccC---CccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 4 MKECGSCGRPITD---RYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 4 ~~~C~~C~~~I~~---~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
.++|.+|+++|.+ .+.+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~ 70 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDI 70 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCc
Confidence 5789999999995 45689999999999999999999998 67889999999999999999853
No 26
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=6.4e-16 Score=93.23 Aligned_cols=63 Identities=22% Similarity=0.577 Sum_probs=57.1
Q ss_pred CCCCCCCCCccccCC-ccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDR-YLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~-~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
..++|.+|+++|.+. +++.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 68 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASG 68 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCc
Confidence 467899999999963 5788999999999999999999999 67889999999999999999865
No 27
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1e-15 Score=96.40 Aligned_cols=62 Identities=21% Similarity=0.464 Sum_probs=56.3
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
..++|.+|+++|.++ .+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+++
T Consensus 24 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~ 86 (90)
T 2dar_A 24 RTPMCAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASG 86 (90)
T ss_dssp CCCBBSSSCCBCCSC-EEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCC
T ss_pred CCCCCccCCCEecce-EEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCC
Confidence 457899999999765 678999999999999999999998 67889999999999999999865
No 28
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=6.4e-16 Score=93.32 Aligned_cols=62 Identities=23% Similarity=0.578 Sum_probs=56.3
Q ss_pred CCCCCCCCCCccccCC-ccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcC
Q psy15439 2 PNMKECGSCGRPITDR-YLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKK 63 (124)
Q Consensus 2 ~~~~~C~~C~~~I~~~-~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~ 63 (124)
++.++|.+|+++|.+. ..+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4678999999999863 4789999999999999999999998 678999999999999999886
No 29
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.60 E-value=6e-16 Score=103.05 Aligned_cols=60 Identities=35% Similarity=0.773 Sum_probs=55.6
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC---CceeeeCCeecccchhhhhcC
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA---HSCFTRENKLYCRSDYDSRKK 63 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~---~~~~~~~g~~yC~~~y~~~f~ 63 (124)
.++|.+|+++|.+.+++.++++.||++||+|..|+++|. ..|+.++|++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 468999999999987789999999999999999999996 478999999999999999986
No 30
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=6.9e-16 Score=95.14 Aligned_cols=62 Identities=23% Similarity=0.444 Sum_probs=55.9
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCCCceeeeCCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLAHSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
+.++|.+|+++|.+. .+.++++.||++||+|..|+++|...+|.+++++||+.||.++|++.
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~~f~p~ 75 (79)
T 2cor_A 14 GKYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVSG 75 (79)
T ss_dssp CCCBCTTTCCBCCSC-CCCCSSSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHHHTTSCCS
T ss_pred CCCCCccCCCEecce-EEEECcceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHHHHhCCCC
Confidence 467899999999965 57899999999999999999999965679999999999999999864
No 31
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=9.3e-16 Score=95.17 Aligned_cols=62 Identities=21% Similarity=0.433 Sum_probs=54.6
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-Ccee--eeCCeecccchhhhhcCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCF--TRENKLYCRSDYDSRKKG 64 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~--~~~g~~yC~~~y~~~f~~ 64 (124)
+.++|.+|++.|.+.+.+.++++.||.+||+|..|+++|. ..++ .+++++||+.||.++|+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcC
Confidence 4578999999998877778999999999999999999999 4555 479999999999998874
No 32
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.4e-15 Score=92.47 Aligned_cols=61 Identities=28% Similarity=0.743 Sum_probs=56.0
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
.++|.+|+++|.+. .+.++++.||++||+|..|+++|. ..++.+++++||+.||.++|+.+
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~ 76 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSG 76 (80)
T ss_dssp SCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSS
T ss_pred CCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCC
Confidence 47899999999986 689999999999999999999998 57889999999999999999864
No 33
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=3.4e-15 Score=92.20 Aligned_cols=63 Identities=17% Similarity=0.509 Sum_probs=56.6
Q ss_pred CCCCCCCCccccCCc-cEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCCC
Q psy15439 4 MKECGSCGRPITDRY-LLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGSQ 66 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~-~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~~ 66 (124)
.++|.+|+++|.+.+ .+.++++.||++||+|..|+++|. ..++.+++++||+.||.++|+++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~ 79 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCC
T ss_pred CCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCC
Confidence 578999999998543 589999999999999999999998 678899999999999999998764
No 34
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.3e-15 Score=91.84 Aligned_cols=61 Identities=21% Similarity=0.568 Sum_probs=56.3
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
.++|.+|+++|.++ .+.++++.||++||+|..|+++|. ..++.+++++||+.||.++|+++
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~ 76 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASG 76 (80)
T ss_dssp SCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCS
T ss_pred CCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCC
Confidence 57899999999886 689999999999999999999998 67889999999999999999864
No 35
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=5.7e-15 Score=91.12 Aligned_cols=62 Identities=27% Similarity=0.715 Sum_probs=54.7
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-Cceeee-CCeecccchhhhhcCCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTR-ENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~-~g~~yC~~~y~~~f~~~ 65 (124)
..++|.+|+++|.+. .+.++++.||++||+|..|+++|. ..|+.. ++++||+.||.++|+++
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~ 77 (81)
T 2dlo_A 14 TLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASG 77 (81)
T ss_dssp SCCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSS
T ss_pred CCCccccCCCeecce-eEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCc
Confidence 467899999999976 789999999999999999999999 455555 78999999999999864
No 36
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-15 Score=93.11 Aligned_cols=62 Identities=29% Similarity=0.563 Sum_probs=55.6
Q ss_pred CCCCCCCCcccc-CCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCCC
Q psy15439 4 MKECGSCGRPIT-DRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 4 ~~~C~~C~~~I~-~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
.++|.+|+++|. +..++.++++.||++||+|..|+++|. ..++.+++++||+.||.++|+++
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~ 78 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSG 78 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGS
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCC
Confidence 468999999998 455678999999999999999999999 67889999999999999998854
No 37
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.6e-15 Score=90.09 Aligned_cols=61 Identities=25% Similarity=0.615 Sum_probs=54.7
Q ss_pred CCCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC--CceeeeCCeecccchhhhhcCC
Q psy15439 3 NMKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA--HSCFTRENKLYCRSDYDSRKKG 64 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~g~~yC~~~y~~~f~~ 64 (124)
..++|++|+++|.+. .+.++++.||++||+|..|+++|. ..++.+++++||+.||.+.++.
T Consensus 4 ~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 4 GSSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 457899999999986 678999999999999999999997 5678899999999999988763
No 38
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=88.98 Aligned_cols=57 Identities=26% Similarity=0.642 Sum_probs=51.7
Q ss_pred CCCCCCCCccccC----CccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhh
Q psy15439 4 MKECGSCGRPITD----RYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDS 60 (124)
Q Consensus 4 ~~~C~~C~~~I~~----~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~ 60 (124)
.++|++|+++|.+ ++.+.++++.||++||+|..|+++|. ..|+.+++++||+.||.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 5789999999995 45789999999999999999999998 668899999999999965
No 39
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=86.10 Aligned_cols=58 Identities=19% Similarity=0.447 Sum_probs=50.6
Q ss_pred CCCCCCCCccccC-CccEEEcCceec--CCCeecCccCCCCC-CceeeeCCeecc-cchhhhh
Q psy15439 4 MKECGSCGRPITD-RYLLRVADISYH--ENCVACVECGHSLA-HSCFTRENKLYC-RSDYDSR 61 (124)
Q Consensus 4 ~~~C~~C~~~I~~-~~~i~~~~~~~H--~~Cf~C~~C~~~L~-~~~~~~~g~~yC-~~~y~~~ 61 (124)
.++|.+|+++|.+ .+.+.++++.|| ++||+|..|+++|. ..|+.++|++|| ++||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 3579999999996 357899999999 99999999999998 678899999999 7777543
No 40
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.49 E-value=2.3e-14 Score=101.58 Aligned_cols=69 Identities=22% Similarity=0.467 Sum_probs=60.1
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCCeecccchhhhhcCC--CCceeeec
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRKKG--SQLVTVLF 72 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f~~--~~c~~~i~ 72 (124)
.++|.+|+++|.+.+.+.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+. .+|.+.++
T Consensus 115 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 356999999999766788999999999999999999998 6788999999999999999984 45665543
No 41
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=3e-14 Score=87.74 Aligned_cols=61 Identities=21% Similarity=0.532 Sum_probs=53.4
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC--Ccee-eeCCeecccchhhhhcCCC
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA--HSCF-TRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~-~~~g~~yC~~~y~~~f~~~ 65 (124)
.++|.+|+++|.+. .+.++++.||++||+|..|+++|. ..++ .+++++||+.||.++|+..
T Consensus 15 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~ 78 (81)
T 1x6a_A 15 GEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGP 78 (81)
T ss_dssp SCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTT
T ss_pred CCcCccCCCCcCce-EEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCC
Confidence 46899999999955 688999999999999999999996 4555 4899999999999998854
No 42
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.36 E-value=2.7e-13 Score=89.87 Aligned_cols=60 Identities=25% Similarity=0.542 Sum_probs=53.5
Q ss_pred CCCCCCCccccCC-ccEEEcCceecCCCeecCccCCCCC--CceeeeCCeecccchhhhhcCC
Q psy15439 5 KECGSCGRPITDR-YLLRVADISYHENCVACVECGHSLA--HSCFTRENKLYCRSDYDSRKKG 64 (124)
Q Consensus 5 ~~C~~C~~~I~~~-~~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~g~~yC~~~y~~~f~~ 64 (124)
++|.+|++.|... .++.++++.||.+||+|..|+++|. ..|+.+++++||+.||.++|+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 4899999999863 3578999999999999999999995 5688999999999999999873
No 43
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.35 E-value=8e-13 Score=81.35 Aligned_cols=61 Identities=18% Similarity=0.372 Sum_probs=51.4
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCeecCccCCCCC-CceeeeCC-eecccchhhhhcCCC
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCVACVECGHSLA-HSCFTREN-KLYCRSDYDSRKKGS 65 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf~C~~C~~~L~-~~~~~~~g-~~yC~~~y~~~f~~~ 65 (124)
.++|.+|+++|.+. .+.++++.||++||+|..|+++|. ..++..++ .+||+.||.+.+...
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~~ 77 (81)
T 1v6g_A 15 GTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77 (81)
T ss_dssp CCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSCC
T ss_pred CCcCccccCEeccc-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCCC
Confidence 46899999999965 789999999999999999999998 56665554 579999998776643
No 44
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=80.97 Aligned_cols=69 Identities=9% Similarity=-0.032 Sum_probs=56.0
Q ss_pred CCeecccchhhhhcC--CCCceeeec-------ccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccccCCCCC
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVLF-------YSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSLLAQPCT 116 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i~-------~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~c~ 116 (124)
+|++||+.||.++|+ |.+|.+.|. +.+..||..||.|+.+ +|.+..+ ..++.+||.+|+.++|+++|+
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~ 80 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPS 80 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSC
T ss_pred CCceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCC
Confidence 589999999999998 667766555 3567899999999875 4665554 456899999999999999997
Q ss_pred C
Q psy15439 117 D 117 (124)
Q Consensus 117 ~ 117 (124)
+
T Consensus 81 ~ 81 (82)
T 2ehe_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.28 E-value=3.8e-12 Score=84.25 Aligned_cols=59 Identities=20% Similarity=0.528 Sum_probs=52.7
Q ss_pred CCCCCCCCccccCC-ccEEEcCceec--CCCeecCccCCCCC-CceeeeCCeecccchhhhhc
Q psy15439 4 MKECGSCGRPITDR-YLLRVADISYH--ENCVACVECGHSLA-HSCFTRENKLYCRSDYDSRK 62 (124)
Q Consensus 4 ~~~C~~C~~~I~~~-~~i~~~~~~~H--~~Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~~f 62 (124)
.++|.+|+++|.+. ..++++++.|| ++||+|..|+++|. +.|+.++|++||+.+|.++|
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhhhc
Confidence 47899999999863 46899999999 99999999999998 67779999999998988876
No 46
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.27 E-value=2.5e-12 Score=85.61 Aligned_cols=59 Identities=25% Similarity=0.554 Sum_probs=52.8
Q ss_pred CCCCCCccccCC-ccEEEcCceecCCCeecCccCCCCC--CceeeeCCeecccchhhhhcCC
Q psy15439 6 ECGSCGRPITDR-YLLRVADISYHENCVACVECGHSLA--HSCFTRENKLYCRSDYDSRKKG 64 (124)
Q Consensus 6 ~C~~C~~~I~~~-~~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~g~~yC~~~y~~~f~~ 64 (124)
+|.+|+++|.+. .++.++++.||++||+|..|+++|. +.|+.+++++||+.||.++|+.
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 799999999874 3678999999999999999999995 5688999999999999988763
No 47
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.23 E-value=1.6e-12 Score=79.94 Aligned_cols=68 Identities=10% Similarity=-0.027 Sum_probs=54.1
Q ss_pred CCeecccchhhhhcC--CCCceeee-----cccCeeeccCcEEeeee--CCCCeeEeE--eCcEEEcccCccccCCCCCC
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVL-----FYSMYVHSVMKFHTITL--PLHTITIRI--QVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i-----~~~~~~~h~~cf~c~~~--~~~~~~~~~--~~~~~~~~~~~~~~a~~c~~ 117 (124)
+|++||+.||. +++ |.+|.+.| .+.+.+||..||.|..+ +|.+..+.. ++.+||.+||.++|||+|++
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhh-cCCCccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 68999999998 555 55665544 45667899999999885 466666654 47999999999999999985
No 48
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=2.6e-12 Score=78.69 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=55.2
Q ss_pred CCeecccchhhhhcC--CCCceeee-----cccCeeeccCcEEeeee--CCCCeeEe-EeCcEEEcccCccccCCCCCC
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVL-----FYSMYVHSVMKFHTITL--PLHTITIR-IQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i-----~~~~~~~h~~cf~c~~~--~~~~~~~~-~~~~~~~~~~~~~~~a~~c~~ 117 (124)
+|++||+.||.++|+ |.+|.+.| .+.+..||..||.|..+ +|.+..+. .++.+||.+|+.++|+|+|++
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 578999999999987 55666544 45667899999999885 46554443 568899999999999999985
No 49
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.21 E-value=7.7e-12 Score=88.28 Aligned_cols=60 Identities=23% Similarity=0.591 Sum_probs=52.6
Q ss_pred CCCCCCccccCCc-cEEEcCceecCCCeecCccCCCCC--CceeeeCCeecccchhhhhcCCC
Q psy15439 6 ECGSCGRPITDRY-LLRVADISYHENCVACVECGHSLA--HSCFTRENKLYCRSDYDSRKKGS 65 (124)
Q Consensus 6 ~C~~C~~~I~~~~-~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~~~~g~~yC~~~y~~~f~~~ 65 (124)
+|.+|+++|.+.+ ++.++++.||++||+|..|+++|. ..|+.+++++||+.||.++|+.+
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 6999999998743 578999999999999999999996 56889999999999999988754
No 50
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=3.4e-12 Score=78.19 Aligned_cols=69 Identities=6% Similarity=-0.202 Sum_probs=55.2
Q ss_pred CCeecccchhhhhcC--CCCceeee-----cccCeeeccCcEEeeeeC--CCCee-EeEeCcEEEcccCccccCCCCCC
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVL-----FYSMYVHSVMKFHTITLP--LHTIT-IRIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i-----~~~~~~~h~~cf~c~~~~--~~~~~-~~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
+|++||+.||.++|+ |.+|.+.| .+.+.+||..||.|+.+. |.+.. +..++.+||.++|.++|+++|++
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCCccchhHHhhhcCCccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 478999999999987 56676544 456678999999998854 55433 44568999999999999999985
No 51
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.10 E-value=2.4e-11 Score=74.70 Aligned_cols=69 Identities=7% Similarity=-0.101 Sum_probs=54.4
Q ss_pred CCeecccchhhhhcC--CCCceeee-------cccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccccCCCCC
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVL-------FYSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSLLAQPCT 116 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i-------~~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~c~ 116 (124)
++.+||+.||.++|+ |.+|.+.| .+.+.+||..||.|..+ +|.+..+ ..++.+||.+||.++|+|+++
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 468999999999987 56665544 44567899999999885 4655443 456899999999999999997
Q ss_pred C
Q psy15439 117 D 117 (124)
Q Consensus 117 ~ 117 (124)
.
T Consensus 81 ~ 81 (82)
T 1x63_A 81 S 81 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.09 E-value=7.7e-11 Score=81.77 Aligned_cols=60 Identities=32% Similarity=0.749 Sum_probs=51.4
Q ss_pred CCCCCCCCccccCCc-cEEEcCceecCCCeecCccCCCCC--Ccee-eeCCeecccchhhhhcC
Q psy15439 4 MKECGSCGRPITDRY-LLRVADISYHENCVACVECGHSLA--HSCF-TRENKLYCRSDYDSRKK 63 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~-~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~-~~~g~~yC~~~y~~~f~ 63 (124)
.++|.+|+++|.+.+ ++.++++.||++||+|..|+++|. +.++ ..+|++||+.||.+.+.
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 468999999998754 458999999999999999999997 4565 46899999999998875
No 53
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.05 E-value=3.1e-11 Score=74.07 Aligned_cols=69 Identities=7% Similarity=0.022 Sum_probs=54.7
Q ss_pred CCeecccchhhhhcC--CCCceeee-----cccCeeeccCcEEeeeeC--CC-CeeEe--EeCcEEEcccCccccCCCCC
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVL-----FYSMYVHSVMKFHTITLP--LH-TITIR--IQVTIIIIRNLSSLLAQPCT 116 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i-----~~~~~~~h~~cf~c~~~~--~~-~~~~~--~~~~~~~~~~~~~~~a~~c~ 116 (124)
++.+||+.||.++|+ |.+|.+.| .+.+.+||..||.|..+. |. +..+. .++.+||.+|+.++||++|+
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 367999999999998 56676544 455678999999998854 53 44554 46799999999999999998
Q ss_pred C
Q psy15439 117 D 117 (124)
Q Consensus 117 ~ 117 (124)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 6
No 54
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.02 E-value=2.4e-10 Score=80.10 Aligned_cols=58 Identities=31% Similarity=0.748 Sum_probs=49.6
Q ss_pred CCCCCCCCccccCCc-cEEEcCceecCCCeecCccCCCCC--Ccee-eeCCeecccchhhhh
Q psy15439 4 MKECGSCGRPITDRY-LLRVADISYHENCVACVECGHSLA--HSCF-TRENKLYCRSDYDSR 61 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~-~i~~~~~~~H~~Cf~C~~C~~~L~--~~~~-~~~g~~yC~~~y~~~ 61 (124)
.++|.+|+++|.+.+ ++.++++.||++||+|..|+++|. +.++ ..++++||+.||.+.
T Consensus 119 ~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred ccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 478999999998754 468999999999999999999997 4555 468999999999764
No 55
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.79 E-value=1.6e-09 Score=68.78 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=45.2
Q ss_pred eecccCeeeccCcEEeeee--CCCCee-EeEeCcEEEcccCccccCCCCCCCCCCcc
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTIT-IRIQVTIIIIRNLSSLLAQPCTDSSRPIP 123 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~-~~~~~~~~~~~~~~~~~a~~c~~c~~~i~ 123 (124)
.+.+.+..||..||.|..+ +|.+.. +..++.+||.+||.++|+|+|++|++||.
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 21 EVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV 77 (101)
T ss_dssp EEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCC
T ss_pred EEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccc
Confidence 4556678999999999875 465554 45678999999999999999999999995
No 56
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=2.9e-09 Score=64.44 Aligned_cols=62 Identities=11% Similarity=-0.058 Sum_probs=46.7
Q ss_pred CCeecccchhhhhcC--CCCceeeec----------ccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccc
Q psy15439 49 ENKLYCRSDYDSRKK--GSQLVTVLF----------YSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSL 110 (124)
Q Consensus 49 ~g~~yC~~~y~~~f~--~~~c~~~i~----------~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~ 110 (124)
++++||+.||.++|+ |.+|.+.|. +.+..||..||.|+.+ +|.+..+ ..++.+||.+|+.+|
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 478999999999988 556655444 4567899999999885 4665544 456889999887653
No 57
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.63 E-value=8e-09 Score=63.15 Aligned_cols=53 Identities=6% Similarity=-0.108 Sum_probs=33.1
Q ss_pred ecccCeeeccCcEEeeeeC--CCCee-EeEeCcEEEcccCccccCCCCCCCCCCcc
Q psy15439 71 LFYSMYVHSVMKFHTITLP--LHTIT-IRIQVTIIIIRNLSSLLAQPCTDSSRPIP 123 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~~--~~~~~-~~~~~~~~~~~~~~~~~a~~c~~c~~~i~ 123 (124)
+.+.+..||..||.|..+. |.+.. +..++.+||.+||.++|+|+|.+|++-+|
T Consensus 23 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~~ 78 (81)
T 1a7i_A 23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAG 78 (81)
T ss_dssp EEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----------
T ss_pred EEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCccc
Confidence 4556789999999998854 44433 44578999999999999999999998665
No 58
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.63 E-value=2.4e-09 Score=70.54 Aligned_cols=53 Identities=8% Similarity=-0.045 Sum_probs=44.2
Q ss_pred ecccCeeeccCcEEeeee--CCC--Ce-eEeEeCcEEEcccCccccCC--CCCCCCCCcc
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLH--TI-TIRIQVTIIIIRNLSSLLAQ--PCTDSSRPIP 123 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~--~~-~~~~~~~~~~~~~~~~~~a~--~c~~c~~~i~ 123 (124)
+.+.+..||..||.|..+ +|. +. .+..++.+||.+||.++|++ +|++|.+||.
T Consensus 21 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred EEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 456678999999999886 464 23 35567899999999999999 9999999995
No 59
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.61 E-value=1.4e-08 Score=61.35 Aligned_cols=54 Identities=4% Similarity=-0.234 Sum_probs=42.8
Q ss_pred eecccCeeeccCcEEeeee--CCCCee-EeEeCcEEEc-ccCccccCCCCCCCCCCcc
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTIT-IRIQVTIIII-RNLSSLLAQPCTDSSRPIP 123 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~-~~~~~~~~~~-~~~~~~~a~~c~~c~~~i~ 123 (124)
.+.+.+..||..||.|..+ +|.+.. +..++.+||. .||.++|+++|++|+.++-
T Consensus 15 ~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 15 RVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp EEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred EEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 3455678999999999875 455433 4456899999 6999999999999998753
No 60
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.50 E-value=8.4e-08 Score=57.87 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=40.6
Q ss_pred eecccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccccCCCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSLLAQPCTDSS 119 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~c~~c~ 119 (124)
.+.+.+..||..||.|..+ +|.+..+ ..++.+||.+|+.++|+++|+.++
T Consensus 23 ~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 23 FICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp EEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred eEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 4566778999999999875 4655543 356899999999999999999875
No 61
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.39 E-value=6.7e-08 Score=59.14 Aligned_cols=47 Identities=13% Similarity=-0.079 Sum_probs=39.0
Q ss_pred ecccCeeeccCcEEeeee--CCCCeeEeEeCcEEEcccCccccCCCCCC
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLHTITIRIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
+.+.+..||..||.|..+ +|.+..+..++.+||.+||.++|+++|++
T Consensus 31 v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 31 LLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp EEETTEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHHTTCCSTT
T ss_pred EEECCcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHHcCCCCCC
Confidence 445678999999999885 46654456678999999999999999986
No 62
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.37 E-value=8.2e-08 Score=57.13 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=38.6
Q ss_pred eecccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.+.+.+.+||..||.|..+ +|.+..+ ..++.+||..||.++|+|+|++
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 21 KLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp EECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred EEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 4556678999999999875 4655444 3568999999999999999985
No 63
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.35 E-value=7e-08 Score=57.08 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=38.0
Q ss_pred ecccCeeeccCcEEeeee--CCCCeeEe-EeCcEEEcccCccccCCCCCC
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLHTITIR-IQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~~~~~~-~~~~~~~~~~~~~~~a~~c~~ 117 (124)
|.+.+..||..||.|..+ +|.+..+. .++.+||.+||.++|+|+|+|
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 20 ITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp EEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred EEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 456678999999999875 46554443 458999999999999999986
No 64
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.32 E-value=2.9e-07 Score=56.09 Aligned_cols=64 Identities=5% Similarity=-0.186 Sum_probs=48.2
Q ss_pred CeecccchhhhhcC--CCCceee-----ecccCeeeccCcEEeeeeC--CC-CeeEeEeCc-EEEcccCccccCC
Q psy15439 50 NKLYCRSDYDSRKK--GSQLVTV-----LFYSMYVHSVMKFHTITLP--LH-TITIRIQVT-IIIIRNLSSLLAQ 113 (124)
Q Consensus 50 g~~yC~~~y~~~f~--~~~c~~~-----i~~~~~~~h~~cf~c~~~~--~~-~~~~~~~~~-~~~~~~~~~~~a~ 113 (124)
+.+||+.||.++|+ |..|.+. |.+.+.+||..||.|..+. |. +..+..++. +||..++.+++..
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CCCcchHHHHhHhCCcCccccCEeccceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCCC
Confidence 46899999999997 5666554 4456778999999998853 54 334566655 7999999887764
No 65
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.32 E-value=7.8e-08 Score=56.97 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=37.8
Q ss_pred ecccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccccCCCCCC
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
+.+.+..||..||.|..+ +|.+..+ ..++.+||.+||.++|+|+|++
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 20 VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp EESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred EEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 556678999999999875 4655443 3468899999999999999985
No 66
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.31 E-value=1.2e-07 Score=59.04 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=38.4
Q ss_pred eecccCeeeccCcEEeeeeC--CCCeeE-eEeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITLP--LHTITI-RIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~~--~~~~~~-~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.+.+.+..||..||.|..+. |.+..+ ..++.+||.+||.++|+|+|++
T Consensus 39 ~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 39 FLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp EEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred EEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 45567789999999998853 554443 3568999999999999999974
No 67
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.26 E-value=2e-07 Score=56.17 Aligned_cols=47 Identities=4% Similarity=-0.188 Sum_probs=37.4
Q ss_pred ecccCeeeccCcEEeeeeC--CCCee-EeEeCcEEEc-ccCccccCCCCCC
Q psy15439 71 LFYSMYVHSVMKFHTITLP--LHTIT-IRIQVTIIII-RNLSSLLAQPCTD 117 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~~--~~~~~-~~~~~~~~~~-~~~~~~~a~~c~~ 117 (124)
+.+.+..||..||.|..+. |.+.. +..++.+||. +||.++|+|+|.+
T Consensus 25 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp EEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred EEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 4466789999999998853 55443 4456899999 7999999999975
No 68
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.26 E-value=2.1e-07 Score=55.30 Aligned_cols=48 Identities=10% Similarity=-0.035 Sum_probs=38.5
Q ss_pred eecccCeeeccCcEEeeee--CCCCeeE-eEeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTITI-RIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~~-~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.+.+.+..||..||.|..+ +|.+..+ ..++.+||.+||.++|+|+|++
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 21 KMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp EEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred EEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 4556678999999999875 4655443 4568999999999999999985
No 69
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.25 E-value=1.5e-07 Score=57.35 Aligned_cols=48 Identities=6% Similarity=-0.024 Sum_probs=39.4
Q ss_pred eecccCeeeccCcEEeeee--CCCCeeEeEeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTITIRIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.|.+.+.+||..||.|..+ +|.+..+..++.+||.+||.++|||++++
T Consensus 29 ~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~~f~p~~ss 78 (79)
T 2cor_A 29 PLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVSGPSS 78 (79)
T ss_dssp CCCCSSSCCCTTTSBCSSSCCBCCTTCEEETTEEECHHHHHTTSCCSSCC
T ss_pred EEEECcceeCCCCCEeCCCCCccCCCCEeECCEEeCHHHHHHhCCCCCCC
Confidence 4556678999999999886 46555566779999999999999998764
No 70
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.13 E-value=5.8e-07 Score=55.75 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=38.5
Q ss_pred eecccCeeeccCcEEeeeeC--CCCe-eEeEeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITLP--LHTI-TIRIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~~--~~~~-~~~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.+.+.+..||..||.|..+. |.+. .+..++.+||.+||.++|+|++.+
T Consensus 39 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~g 89 (89)
T 1x64_A 39 VVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSSG 89 (89)
T ss_dssp CEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCCC
T ss_pred EEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 45567789999999998864 5543 345678999999999999999875
No 71
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.12 E-value=2.9e-07 Score=59.78 Aligned_cols=50 Identities=10% Similarity=-0.243 Sum_probs=40.6
Q ss_pred eecccCeeeccCcEEeeee--CCCC---eeEeEeCcEEEcccCccccCCCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHT---ITIRIQVTIIIIRNLSSLLAQPCTDSS 119 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~---~~~~~~~~~~~~~~~~~~~a~~c~~c~ 119 (124)
.+.+.+..||..||.|+.+ +|.. ..+..++.+||.+||.++|+|+|..|.
T Consensus 18 ~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~ 72 (114)
T 1j2o_A 18 FLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGS 72 (114)
T ss_dssp EEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCB
T ss_pred EEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCC
Confidence 4566788999999999886 4642 234567899999999999999998885
No 72
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.04 E-value=8.7e-07 Score=44.82 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=26.3
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCe
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCV 32 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf 32 (124)
.++|..|++.++..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35799999999988888999999999997
No 73
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.04 E-value=7.8e-07 Score=58.43 Aligned_cols=53 Identities=8% Similarity=-0.078 Sum_probs=41.0
Q ss_pred eecccCeeeccCcEEeeeeC--C-CCeeE-eEeCcEEEcccCccccCCCCCCCCCCc
Q psy15439 70 VLFYSMYVHSVMKFHTITLP--L-HTITI-RIQVTIIIIRNLSSLLAQPCTDSSRPI 122 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~~--~-~~~~~-~~~~~~~~~~~~~~~~a~~c~~c~~~i 122 (124)
.+.+.+..||..||.|..+. | .+..+ ..++.+||..|+.++|+++|+.++-++
T Consensus 24 ~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~ 80 (123)
T 2l3k_A 24 TMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGG 80 (123)
T ss_dssp CCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCS
T ss_pred EEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCC
Confidence 34556789999999998863 6 34333 346889999999999999999877553
No 74
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.03 E-value=4.1e-07 Score=56.67 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=39.7
Q ss_pred ecccCeeeccCcEEeeee--CCCCe-eEeEeCcEEEcccCccccCCCCCCCCCCcc
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLHTI-TIRIQVTIIIIRNLSSLLAQPCTDSSRPIP 123 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~c~~c~~~i~ 123 (124)
+.+.+..||..||.|..+ +|... .+..++.+||.+||.++|+|+|+ +.+.+|
T Consensus 31 v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~-~~~g~g 85 (91)
T 2d8y_A 31 LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGN-YDEGFG 85 (91)
T ss_dssp EECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSC-CCSCCC
T ss_pred EEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcC-ccCCcC
Confidence 456678999999999875 35543 34456899999999999999998 444344
No 75
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.00 E-value=6.1e-07 Score=53.91 Aligned_cols=46 Identities=7% Similarity=-0.130 Sum_probs=35.6
Q ss_pred ecccCeeeccCcEEeeee--CCCCee-EeEeCcEEEcccCccccCCCCC
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLHTIT-IRIQVTIIIIRNLSSLLAQPCT 116 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~~~~-~~~~~~~~~~~~~~~~~a~~c~ 116 (124)
+.+.+..||..||.|..+ +|.+.. +..++.+||.+||.++|+|+|+
T Consensus 28 ~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp EEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred EEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 345677999999999875 465443 4567899999999999999996
No 76
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.92 E-value=2e-06 Score=51.01 Aligned_cols=47 Identities=6% Similarity=-0.109 Sum_probs=37.5
Q ss_pred eecccCeeeccCcEEeeee--CCCCeeEe-EeCcEEEcccCccccCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTITIR-IQVTIIIIRNLSSLLAQPCT 116 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~~~-~~~~~~~~~~~~~~~a~~c~ 116 (124)
.+.+.+..||..||.|..+ +|.+..+. .++.+||.+|+.++|+|++.
T Consensus 23 ~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~g 72 (72)
T 1x4l_A 23 YISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG 72 (72)
T ss_dssp CEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSCC
T ss_pred eEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCCC
Confidence 4455678999999999875 46655544 56899999999999999873
No 77
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=97.86 E-value=2.1e-06 Score=50.11 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=35.9
Q ss_pred eecccCeeeccCcEEeeee--CCCCee-EeEeCcEEEcccCccccCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTIT-IRIQVTIIIIRNLSSLLAQP 114 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~-~~~~~~~~~~~~~~~~~a~~ 114 (124)
.+.+.+..||..||.|+.+ +|.+.. +..++.+||.+||.++|+||
T Consensus 19 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 19 VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp EECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred EEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 4566778999999999885 355543 44568999999999999997
No 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.85 E-value=4.9e-06 Score=50.81 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=37.1
Q ss_pred ecccCeeeccCcEEeeee--CCCCeeEe---EeCcEEEcccCccccCCCCCC
Q psy15439 71 LFYSMYVHSVMKFHTITL--PLHTITIR---IQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 71 i~~~~~~~h~~cf~c~~~--~~~~~~~~---~~~~~~~~~~~~~~~a~~c~~ 117 (124)
+.+.+..||..||.|..+ +|....+. .++.+||.+||.++|+..+++
T Consensus 31 v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~~ 82 (82)
T 2co8_A 31 LCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSSG 82 (82)
T ss_dssp CCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCCC
T ss_pred EEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCCC
Confidence 345677999999999885 36555544 468999999999999998764
No 79
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.75 E-value=4.3e-06 Score=49.31 Aligned_cols=48 Identities=10% Similarity=-0.187 Sum_probs=38.2
Q ss_pred eecccCeeeccCcEEeeee--CCCCeeEe-EeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLHTITIR-IQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~~~~~~-~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.+.+.+..||..||.|..+ +|.+..+. .++.+||.+||.++|+++.++
T Consensus 19 ~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~s 69 (70)
T 2d8x_A 19 VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPSS 69 (70)
T ss_dssp CEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSCC
T ss_pred EEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCCC
Confidence 4566778999999999886 46554544 568999999999999998764
No 80
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.75 E-value=2.3e-06 Score=51.81 Aligned_cols=48 Identities=6% Similarity=-0.016 Sum_probs=37.7
Q ss_pred eecccCeeeccCcEEeeeeC--CCCe-eEeEeCcEEEcccCccccCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITLP--LHTI-TIRIQVTIIIIRNLSSLLAQPCTD 117 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~~--~~~~-~~~~~~~~~~~~~~~~~~a~~c~~ 117 (124)
.+.+.+..||..||.|..+. |.+. .+..++.+||.+||.++|+|++.+
T Consensus 29 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~g 79 (79)
T 1x62_A 29 FVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSSG 79 (79)
T ss_dssp CEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCCC
T ss_pred EEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCCC
Confidence 45666789999999998864 4333 244568999999999999999864
No 81
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.50 E-value=1.9e-05 Score=46.65 Aligned_cols=48 Identities=15% Similarity=-0.060 Sum_probs=36.5
Q ss_pred eecccCeeeccCcEEeeeeC--CCCee-EeEeCcEEEcccCccccCCCCCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITLP--LHTIT-IRIQVTIIIIRNLSSLLAQPCTDS 118 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~~--~~~~~-~~~~~~~~~~~~~~~~~a~~c~~c 118 (124)
.+.+.+..||..||.|..+. |.+.. +..++.+||.++|.++|+ +|+.+
T Consensus 21 ~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 21 GVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp CEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred EEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence 44566789999999998853 65544 345688999999999995 67655
No 82
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=97.16 E-value=5.4e-05 Score=44.33 Aligned_cols=43 Identities=7% Similarity=-0.113 Sum_probs=33.2
Q ss_pred eecccCeeeccCcEEeeeeC--CCCe-eEeEeCcEEEcccCccccC
Q psy15439 70 VLFYSMYVHSVMKFHTITLP--LHTI-TIRIQVTIIIIRNLSSLLA 112 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~~--~~~~-~~~~~~~~~~~~~~~~~~a 112 (124)
.+.+.+..||..||.|..+. |.+. ....++.+||..+|.++||
T Consensus 27 ~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 27 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp EEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred EEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 34566778999999998854 5433 3456689999999999997
No 83
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=97.14 E-value=7.9e-05 Score=44.32 Aligned_cols=45 Identities=7% Similarity=-0.223 Sum_probs=35.0
Q ss_pred eecccCeeeccCcEEeeee--CCC-CeeEe-EeCcEEEcccCccccCCC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLH-TITIR-IQVTIIIIRNLSSLLAQP 114 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~-~~~~~-~~~~~~~~~~~~~~~a~~ 114 (124)
.|.+.+..||..||.|..+ +|. +..+. .++.+||.+++..++|++
T Consensus 19 ~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 19 VLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred eEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 4566778999999999885 455 44444 457899999999999975
No 84
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=96.58 E-value=0.00013 Score=47.88 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=32.9
Q ss_pred eecccCeeeccCcEEeeee--CCC--Ce-eEeEeCcEEEcccCccccC
Q psy15439 70 VLFYSMYVHSVMKFHTITL--PLH--TI-TIRIQVTIIIIRNLSSLLA 112 (124)
Q Consensus 70 ~i~~~~~~~h~~cf~c~~~--~~~--~~-~~~~~~~~~~~~~~~~~~a 112 (124)
.+.+.+..||..||.|..+ +|. +. .+..++.+||.+||.++||
T Consensus 76 ~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 76 LLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp EEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred EEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3556677999999999886 353 22 3455789999999999986
No 85
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=96.16 E-value=0.00078 Score=38.88 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=29.9
Q ss_pred eecccCeeec--cCcEEeeee--CCCCeeEe-EeCcEEE-cccCccc
Q psy15439 70 VLFYSMYVHS--VMKFHTITL--PLHTITIR-IQVTIII-IRNLSSL 110 (124)
Q Consensus 70 ~i~~~~~~~h--~~cf~c~~~--~~~~~~~~-~~~~~~~-~~~~~~~ 110 (124)
.|.+.+..|| ..||.|+.+ +|.+..+. .++.+|| .+++.++
T Consensus 18 ~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 18 RVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred EEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4566788999 999999885 46665544 5588999 6666544
No 86
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=80.60 E-value=0.46 Score=25.11 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=9.3
Q ss_pred CCCCCCCCccC
Q psy15439 114 PCTDSSRPIPV 124 (124)
Q Consensus 114 ~c~~c~~~i~~ 124 (124)
.|++|+|||.+
T Consensus 19 vC~~CgkPi~l 29 (44)
T 2lo3_A 19 VCEKCGKPLAL 29 (44)
T ss_dssp ECTTTCCEEET
T ss_pred hhcccCCcchH
Confidence 59999999964
No 87
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=73.74 E-value=1.3 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=15.5
Q ss_pred ceeeeCCeecccchhhhhcC
Q psy15439 44 SCFTRENKLYCRSDYDSRKK 63 (124)
Q Consensus 44 ~~~~~~g~~yC~~~y~~~f~ 63 (124)
.|...+-+++|++|+.++-.
T Consensus 21 F~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp SBCCTTTTTSCHHHHHHHHT
T ss_pred eEEEecCccchHHHHHHHhh
Confidence 34467899999999987643
No 88
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=72.97 E-value=2.6 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=22.6
Q ss_pred ecCccCCCCC-CceeeeCCeecc-cchhhhhcC
Q psy15439 33 ACVECGHSLA-HSCFTRENKLYC-RSDYDSRKK 63 (124)
Q Consensus 33 ~C~~C~~~L~-~~~~~~~g~~yC-~~~y~~~f~ 63 (124)
.|..|+..++ +.-+.++|+.|| ++|......
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~gH~~ 41 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADGHTG 41 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHTSCS
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHccCCC
Confidence 4677887777 677889999998 667655443
No 89
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=51.73 E-value=5 Score=28.02 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=24.0
Q ss_pred CeecCccCCCCC-CceeeeCCeecccchhhh
Q psy15439 31 CVACVECGHSLA-HSCFTRENKLYCRSDYDS 60 (124)
Q Consensus 31 Cf~C~~C~~~L~-~~~~~~~g~~yC~~~y~~ 60 (124)
-..|..|+.... .+-...+|+.+|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 468999998877 445577999999999864
No 90
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=51.14 E-value=3.1 Score=25.83 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=9.2
Q ss_pred CCCCCCCCccC
Q psy15439 114 PCTDSSRPIPV 124 (124)
Q Consensus 114 ~c~~c~~~i~~ 124 (124)
.|.+|++||.+
T Consensus 77 vCn~CGkPI~l 87 (96)
T 3mhs_E 77 VCEKCGKPLAL 87 (96)
T ss_dssp EETTTCCEECG
T ss_pred hhhccCCceeH
Confidence 59999999963
No 91
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.03 E-value=15 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCccccCCcc---EEEcCceec
Q psy15439 1 MPNMKECGSCGRPITDRYL---LRVADISYH 28 (124)
Q Consensus 1 ~~~~~~C~~C~~~I~~~~~---i~~~~~~~H 28 (124)
|+....|.-|+..|++... +...++.++
T Consensus 1 M~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 1 MARWNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCCCCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred CCceeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 7888999999999987533 333455554
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.91 E-value=18 Score=22.10 Aligned_cols=10 Identities=30% Similarity=0.551 Sum_probs=6.1
Q ss_pred Ceecccchhh
Q psy15439 50 NKLYCRSDYD 59 (124)
Q Consensus 50 g~~yC~~~y~ 59 (124)
+-+.|+.||.
T Consensus 42 ~FPvCrpCyE 51 (93)
T 1weo_A 42 GFPACRPCYE 51 (93)
T ss_dssp CCCCCHHHHH
T ss_pred CChhhHHHHH
Confidence 3456777764
No 93
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=34.98 E-value=0.75 Score=22.05 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.1
Q ss_pred cCCCCCCCCCCc
Q psy15439 111 LAQPCTDSSRPI 122 (124)
Q Consensus 111 ~a~~c~~c~~~i 122 (124)
+.|||+.|.|-|
T Consensus 12 leqkcaaceqki 23 (32)
T 4g1a_A 12 LEQKCAACEQKI 23 (32)
T ss_dssp HHHHTSSHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457899988766
No 94
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=33.36 E-value=20 Score=22.25 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=10.7
Q ss_pred CCCCCCCCccccCC
Q psy15439 4 MKECGSCGRPITDR 17 (124)
Q Consensus 4 ~~~C~~C~~~I~~~ 17 (124)
-..|..|++.|.-.
T Consensus 25 Ra~Ck~C~~kI~Kg 38 (106)
T 2dmj_A 25 RASCKKCSESIPKD 38 (106)
T ss_dssp CCBCSSSCCBCCTT
T ss_pred CCcchhhCCccCCC
Confidence 46799999998643
No 95
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=31.06 E-value=48 Score=18.41 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=21.7
Q ss_pred CCeecCccCCCCCCceeeeCCeecccchhhhhc
Q psy15439 30 NCVACVECGHSLAHSCFTRENKLYCRSDYDSRK 62 (124)
Q Consensus 30 ~Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f 62 (124)
+-|.|..|...+.+-....-|..||..|-.+.+
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHH
Confidence 346777777776654445567888888765544
No 96
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=30.90 E-value=20 Score=22.66 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=11.1
Q ss_pred CCCCCCCCCccccCC
Q psy15439 3 NMKECGSCGRPITDR 17 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~ 17 (124)
+-..|.+|++.|.-.
T Consensus 19 ~RA~Ck~Ck~kI~Kg 33 (114)
T 1v9x_A 19 SRSSCKTCKSVINKE 33 (114)
T ss_dssp SCCBCSSSCCBCCSS
T ss_pred CCCCchhhCCccCCC
Confidence 346799999999643
No 97
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=30.65 E-value=28 Score=18.80 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=14.4
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCe
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCV 32 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf 32 (124)
...|.-|...+.+..++..-+..||..|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci 33 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVCI 33 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTHH
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHHH
Confidence 34577776665543222223445555554
No 98
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.57 E-value=13 Score=21.65 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=16.1
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCe
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCV 32 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf 32 (124)
...|+-|...|.....-..-+..||..|+
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 45688888887644221223445565554
No 99
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=26.45 E-value=18 Score=25.76 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=16.1
Q ss_pred CCCCCCCCccccCCccEEEcCceecCCCe
Q psy15439 4 MKECGSCGRPITDRYLLRVADISYHENCV 32 (124)
Q Consensus 4 ~~~C~~C~~~I~~~~~i~~~~~~~H~~Cf 32 (124)
...|..|.+.|.....-.--+..||..|+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHH
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHH
Confidence 46688888877643211113455666555
No 100
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=26.04 E-value=23 Score=22.28 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=9.8
Q ss_pred CCCCCCCCCcc
Q psy15439 113 QPCTDSSRPIP 123 (124)
Q Consensus 113 ~~c~~c~~~i~ 123 (124)
-.|..|+.|||
T Consensus 57 G~C~~CGe~Ip 67 (108)
T 2kgo_A 57 DECEECGAPIP 67 (108)
T ss_dssp SBCTTTCCBCC
T ss_pred ceecccCCccc
Confidence 57999999998
No 101
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=25.86 E-value=28 Score=22.35 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=9.5
Q ss_pred CCCCCCCCCCcc
Q psy15439 112 AQPCTDSSRPIP 123 (124)
Q Consensus 112 a~~c~~c~~~i~ 123 (124)
+|+|++|..+|.
T Consensus 41 ~pkC~~cg~~L~ 52 (119)
T 3iz5_i 41 GPKCPVTGKKIQ 52 (119)
T ss_dssp CCCSTTSSCCSS
T ss_pred CCCCCCCCCccC
Confidence 578999988764
No 102
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.14 E-value=47 Score=18.54 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=25.2
Q ss_pred eecCccCCCCCCceeeeCCee-cccchhhhhcCCCCceeeecc
Q psy15439 32 VACVECGHSLAHSCFTRENKL-YCRSDYDSRKKGSQLVTVLFY 73 (124)
Q Consensus 32 f~C~~C~~~L~~~~~~~~g~~-yC~~~y~~~f~~~~c~~~i~~ 73 (124)
..|..|...+.+..+..=|.. +|..|..+...|.-|...+..
T Consensus 26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 345566555544333333666 898888776667767665544
No 103
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.57 E-value=53 Score=17.86 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=21.6
Q ss_pred CeecCccCCCCCCceeeeCCeecccchhhhhc
Q psy15439 31 CVACVECGHSLAHSCFTRENKLYCRSDYDSRK 62 (124)
Q Consensus 31 Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f 62 (124)
-+.|..|...+.+.....=|..||..|..+.+
T Consensus 20 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 20 EVICPICLDILQKPVTIDCGHNFCLKCITQIG 51 (73)
T ss_dssp CCBCTTTCSBCSSEEECTTCCEEEHHHHHHHC
T ss_pred CCEeccCCcccCCeEEcCCCChhhHHHHHHHH
Confidence 46777777777644444447788888877665
No 104
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.87 E-value=99 Score=16.98 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=5.7
Q ss_pred CCCCCCCcccc
Q psy15439 5 KECGSCGRPIT 15 (124)
Q Consensus 5 ~~C~~C~~~I~ 15 (124)
..|.-|.+.+.
T Consensus 16 ~~C~IC~~~~~ 26 (78)
T 2ect_A 16 LECPVCKEDYA 26 (78)
T ss_dssp CCCTTTTSCCC
T ss_pred CCCeeCCcccc
Confidence 34555555554
No 105
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.21 E-value=31 Score=20.95 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.2
Q ss_pred CCCCCCCCCCcc
Q psy15439 112 AQPCTDSSRPIP 123 (124)
Q Consensus 112 a~~c~~c~~~i~ 123 (124)
+|+|++|..++.
T Consensus 33 ~pkC~~cg~~L~ 44 (89)
T 3j21_d 33 IAHCAMCGRPLN 44 (89)
T ss_dssp CCBCSSSCCBCT
T ss_pred CCCCCCCCCccC
Confidence 568999988763
No 106
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=22.47 E-value=29 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=9.7
Q ss_pred CCCCCCCCCcc
Q psy15439 113 QPCTDSSRPIP 123 (124)
Q Consensus 113 ~~c~~c~~~i~ 123 (124)
-.|..|+.|||
T Consensus 112 g~C~~Cg~~Ip 122 (151)
T 1tjl_A 112 GYCESCGVEIG 122 (151)
T ss_dssp SBCSSSSCBCC
T ss_pred ceeCCCCCcch
Confidence 47999999998
No 107
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.46 E-value=66 Score=17.81 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=19.2
Q ss_pred CeecCccCCCCCCceeeeCCeecccchhhh
Q psy15439 31 CVACVECGHSLAHSCFTRENKLYCRSDYDS 60 (124)
Q Consensus 31 Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~ 60 (124)
-+.|..|...+.+.....=|..||..|..+
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~ 48 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHSFCRACITL 48 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCCBCHHHHHH
T ss_pred CCCCcCCChhhCcceeCCCCCHHHHHHHHH
Confidence 466777777666433333477788888654
No 108
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=22.26 E-value=26 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.0
Q ss_pred CCCCCCCCCccccC
Q psy15439 3 NMKECGSCGRPITD 16 (124)
Q Consensus 3 ~~~~C~~C~~~I~~ 16 (124)
+-..|.+|++.|..
T Consensus 18 ~Ra~Ck~C~~kI~K 31 (111)
T 3odc_A 18 NRSTCKGCMEKIEK 31 (111)
T ss_dssp SCCBCTTTCCBCCT
T ss_pred CCccccccCCCccC
Confidence 45679999999964
No 109
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.55 E-value=49 Score=17.77 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=21.2
Q ss_pred CeecCccCCCCCCceeeeCCeecccchhhhhc
Q psy15439 31 CVACVECGHSLAHSCFTRENKLYCRSDYDSRK 62 (124)
Q Consensus 31 Cf~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f 62 (124)
-+.|..|...+.+.....=|..||..|..+.+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQTECGHRFCESCMAALL 46 (66)
T ss_dssp CEECTTTCCEESSCCCCSSSCCCCHHHHHHHH
T ss_pred CCCCCCCChHhcCeeECCCCCHHHHHHHHHHH
Confidence 46777777766543334447788888877655
No 110
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=21.39 E-value=17 Score=22.78 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.9
Q ss_pred CCCCCCCCCcc
Q psy15439 113 QPCTDSSRPIP 123 (124)
Q Consensus 113 ~~c~~c~~~i~ 123 (124)
-.|..|+.|||
T Consensus 82 g~C~~Cg~~I~ 92 (112)
T 2kq9_A 82 GTCVKCGKRIS 92 (112)
T ss_dssp SEETTTTEECC
T ss_pred CeeCCCCCccc
Confidence 47888888887
No 111
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=21.31 E-value=34 Score=21.97 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.4
Q ss_pred CCCCCCCCCCcc
Q psy15439 112 AQPCTDSSRPIP 123 (124)
Q Consensus 112 a~~c~~c~~~i~ 123 (124)
+|+|++|..++.
T Consensus 41 ~pkCg~Cg~~L~ 52 (121)
T 3u5e_g 41 RPKCGDCGSALQ 52 (121)
T ss_dssp CCBCTTTCCBCT
T ss_pred CCCCCCCCCccC
Confidence 578999988764
No 112
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.26 E-value=42 Score=19.27 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=12.7
Q ss_pred ceeeeCCeecccchhhhh
Q psy15439 44 SCFTRENKLYCRSDYDSR 61 (124)
Q Consensus 44 ~~~~~~g~~yC~~~y~~~ 61 (124)
++.--++.+||..||.+.
T Consensus 21 rC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 21 RCAGCDGDLYCARCFREG 38 (67)
T ss_dssp EETTTTSEEECSSHHHHH
T ss_pred EecCCCCceehHHHHHHH
Confidence 344456789999998654
No 113
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=21.23 E-value=63 Score=18.01 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=24.2
Q ss_pred eecCccCCCCCCceeeeCCee-cccchhhhhcCCCCceeeecc
Q psy15439 32 VACVECGHSLAHSCFTRENKL-YCRSDYDSRKKGSQLVTVLFY 73 (124)
Q Consensus 32 f~C~~C~~~L~~~~~~~~g~~-yC~~~y~~~f~~~~c~~~i~~ 73 (124)
+.|..|...+.+..+..=|.. +|..|..+...|.-|...+..
T Consensus 25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 355666655544333333566 888887766556666555443
No 114
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=20.45 E-value=27 Score=22.19 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=10.8
Q ss_pred CCCCCCCCCccccCC
Q psy15439 3 NMKECGSCGRPITDR 17 (124)
Q Consensus 3 ~~~~C~~C~~~I~~~ 17 (124)
+-..|..|++.|...
T Consensus 37 ~RA~Ck~C~~kI~Kg 51 (116)
T 3od8_A 37 GRASCKKCSESIPKD 51 (116)
T ss_dssp SCCBCTTTCCBCCTT
T ss_pred CCccCcccCCccCCC
Confidence 346788999888643
No 115
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=20.37 E-value=61 Score=16.43 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=8.0
Q ss_pred CCCCCCCCccccC
Q psy15439 4 MKECGSCGRPITD 16 (124)
Q Consensus 4 ~~~C~~C~~~I~~ 16 (124)
...|.-|.+.+.+
T Consensus 5 ~~~C~IC~~~~~~ 17 (55)
T 2ecm_A 5 SSGCPICLEDIHT 17 (55)
T ss_dssp CCSCTTTCCCCCT
T ss_pred CCcCcccChhhcC
Confidence 3457777776643
Done!