RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15439
(124 letters)
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 48.2 bits (115), Expect = 9e-10
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENCV 32
+ K C CG I DR+LL D +H C+
Sbjct: 1 SWKRCAGCGGKIADRFLLYAMDSYWHSRCL 30
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 44.0 bits (104), Expect = 4e-08
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 3 NMKECGSCGRPITDRYLLRVADISYHENC 31
++ CG C + I DRY L+ D +HE+C
Sbjct: 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 29.0 bits (65), Expect = 0.049
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 32 VACVECGHSLAHSCFTRENK------LYCRSDYDSRKKGSQ 66
VAC ECG C+ E + C++ Y + +
Sbjct: 36 VACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPR 76
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 27.8 bits (62), Expect = 0.060
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 7 CGSCGRPITDRYLLRVADISYHENC 31
C +C +PI DR +LR +YH C
Sbjct: 11 CATCSQPILDR-ILRAMGKAYHPGC 34
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 27.4 bits (61), Expect = 0.095
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 34 CVECGHSLAH-SCFTRENKLYCRSDY 58
C +CG SL + ++ ++YC+ Y
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCY 27
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 25.8 bits (57), Expect = 0.27
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 7 CGSCGRPITDRYLLRVADISYHENC 31
CG C RP+ + Y L D +H C
Sbjct: 11 CGGCNRPVLENY-LSAMDTVWHPEC 34
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.4 bits (56), Expect = 0.41
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 34 CVECGHSLAHSCF-TRENKLYCRSDYD 59
C +C F E + YC D+
Sbjct: 3 CAQCFQQFPEGLFYEFEGRKYCEHDFQ 29
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 34
Score = 25.1 bits (55), Expect = 0.48
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 34 CVECGHSLA---HSCFTRENKLYCRSDY 58
C C L S +T+ + CR+DY
Sbjct: 2 CSSCQAQLGDIGTSSYTKSGMILCRNDY 29
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and
RPA-binding domain, N-terminal subdomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 36
Score = 25.2 bits (55), Expect = 0.61
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 2 PNMKECGSCGRPITDRYLLRVADISYHENC 31
+ C CG+ D YL+ D+ ++C
Sbjct: 3 FDYVICEECGKEFMDSYLMDHFDLPTCDDC 32
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein
6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 23.9 bits (52), Expect = 1.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 34 CVECGHSLAHSCFT--RENKLYCRSDY 58
CV C L FT ++++C D+
Sbjct: 2 CVVCHRGLDGIPFTVDATSQIHCIEDF 28
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 25.5 bits (55), Expect = 2.1
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 25 ISYHENCVACVECGHSLAHSCFTRENKLYC--RSDYDSRKKGSQLVTVLFYSMYVHSVMK 82
+ + E E GH + C E ++ + D + SQ++ + M
Sbjct: 440 LQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMS 499
Query: 83 FHTIT 87
H T
Sbjct: 500 RHYRT 504
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 23.6 bits (51), Expect = 2.1
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 7 CGSCGRPITDRYL 19
C C + I +L
Sbjct: 21 CAHCNQVIRGPFL 33
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 23.2 bits (50), Expect = 2.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 7 CGSCGRPITDR 17
CG+C RPI R
Sbjct: 8 CGACRRPIEGR 18
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId:
1423]}
Length = 399
Score = 24.3 bits (52), Expect = 5.0
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 93 ITIRIQVTIIIIRNL 107
+I+ +IIRN+
Sbjct: 143 GNFQIKSDNVIIRNI 157
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 22.0 bits (47), Expect = 7.0
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 34 CVECGHSLAHSCFTRENKLYCRSDY 58
C C L +++ YC SDY
Sbjct: 2 CQTCSVILTGEYISKDGVPYCESDY 26
>d1v3ea_ b.68.1.1 (A:) Hemagglutinin-neuraminidase glycoprotein
{Human parainfluenza virus type 3 [TaxId: 11216]}
Length = 431
Score = 24.0 bits (52), Expect = 7.7
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 44 SCFTRENKLYCRS 56
SC T NK YC
Sbjct: 393 SCITHYNKGYCFH 405
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.137 0.431
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 462,208
Number of extensions: 19433
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 28
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)