Query psy1544
Match_columns 1331
No_of_seqs 992 out of 5440
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:07:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386|consensus 100.0 4E-197 9E-202 1742.8 75.3 1004 197-1327 128-1134(1157)
2 KOG0385|consensus 100.0 3E-109 6E-114 965.0 46.1 511 548-1083 159-672 (971)
3 KOG0384|consensus 100.0 1.2E-98 3E-103 913.7 35.5 522 539-1081 353-888 (1373)
4 KOG0391|consensus 100.0 4.6E-94 9.9E-99 854.1 40.3 523 547-1083 606-1465(1958)
5 KOG0388|consensus 100.0 1.7E-93 3.6E-98 818.9 43.5 624 332-1038 403-1182(1185)
6 PLN03142 Probable chromatin-re 100.0 1.7E-88 3.6E-93 862.2 58.8 511 546-1084 160-672 (1033)
7 KOG0389|consensus 100.0 2.7E-89 5.9E-94 801.2 42.6 489 543-1041 385-919 (941)
8 KOG0387|consensus 100.0 2.7E-87 6E-92 785.9 38.3 476 553-1044 202-692 (923)
9 KOG0392|consensus 100.0 1.2E-81 2.6E-86 759.9 38.2 488 551-1044 970-1488(1549)
10 KOG1015|consensus 100.0 4.7E-71 1E-75 648.9 35.9 528 555-1093 667-1361(1567)
11 KOG0390|consensus 100.0 1.2E-68 2.5E-73 650.4 40.4 479 551-1042 233-739 (776)
12 KOG1002|consensus 100.0 1.8E-67 4E-72 586.4 33.3 472 546-1033 175-772 (791)
13 KOG4439|consensus 100.0 2.3E-64 5.1E-69 583.7 31.2 467 551-1035 320-883 (901)
14 KOG1016|consensus 100.0 4.5E-61 9.8E-66 554.8 32.9 516 526-1057 225-892 (1387)
15 COG0553 HepA Superfamily II DN 100.0 1E-60 2.2E-65 633.6 34.2 487 543-1033 324-845 (866)
16 KOG1000|consensus 100.0 2.3E-54 5E-59 483.6 33.5 420 555-1031 197-624 (689)
17 PRK04914 ATP-dependent helicas 100.0 7.9E-55 1.7E-59 553.6 30.5 434 554-1037 150-632 (956)
18 KOG0383|consensus 100.0 6.7E-51 1.4E-55 491.9 7.0 391 547-964 284-696 (696)
19 KOG1001|consensus 100.0 5.2E-48 1.1E-52 475.1 19.3 452 561-1032 135-672 (674)
20 TIGR00603 rad25 DNA repair hel 100.0 1.4E-38 3E-43 392.5 32.8 384 554-1059 253-665 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 3.8E-39 8.2E-44 373.5 20.0 280 560-854 1-298 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 1.4E-34 3.1E-39 376.8 32.7 451 555-1028 14-497 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 1.7E-32 3.7E-37 313.5 34.7 442 555-1035 14-506 (542)
24 KOG0298|consensus 100.0 3.4E-31 7.5E-36 326.5 17.1 267 572-854 371-690 (1394)
25 PHA02558 uvsW UvsW helicase; P 100.0 3.1E-29 6.7E-34 309.1 32.9 340 554-1011 112-456 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 4.3E-29 9.2E-34 302.0 31.3 365 552-1022 32-406 (442)
27 KOG0330|consensus 100.0 1.1E-28 2.4E-33 272.0 18.1 332 543-1013 70-410 (476)
28 PTZ00110 helicase; Provisional 100.0 2.2E-27 4.7E-32 294.8 29.1 322 555-1010 151-484 (545)
29 KOG0331|consensus 100.0 2.5E-27 5.3E-32 279.4 26.2 317 555-1003 112-443 (519)
30 KOG0354|consensus 100.0 3.2E-26 7E-31 277.1 35.3 458 540-1032 46-550 (746)
31 PRK11776 ATP-dependent RNA hel 100.0 1.8E-26 3.8E-31 283.4 30.1 318 554-1010 24-349 (460)
32 TIGR00614 recQ_fam ATP-depende 99.9 1.9E-26 4E-31 283.0 27.7 307 555-1004 10-329 (470)
33 KOG0338|consensus 99.9 2.9E-26 6.3E-31 259.4 25.1 338 545-1020 192-541 (691)
34 PRK10590 ATP-dependent RNA hel 99.9 3.7E-26 8E-31 279.6 27.5 314 554-1003 21-347 (456)
35 PRK11192 ATP-dependent RNA hel 99.9 9.5E-26 2.1E-30 275.2 29.8 316 554-1003 21-347 (434)
36 PRK04837 ATP-dependent RNA hel 99.9 2.2E-25 4.7E-30 270.9 30.7 317 555-1009 29-361 (423)
37 PRK11634 ATP-dependent RNA hel 99.9 2E-25 4.3E-30 279.5 30.3 315 553-1003 25-347 (629)
38 PRK04537 ATP-dependent RNA hel 99.9 1.2E-25 2.5E-30 280.2 27.6 318 554-1009 29-363 (572)
39 PLN00206 DEAD-box ATP-dependen 99.9 1.7E-25 3.6E-30 277.1 28.3 320 554-1010 141-475 (518)
40 PRK01297 ATP-dependent RNA hel 99.9 2.7E-25 5.8E-30 273.8 29.8 319 555-1010 108-442 (475)
41 KOG1123|consensus 99.9 4.5E-26 9.7E-31 256.6 16.1 381 555-1059 301-711 (776)
42 PRK11057 ATP-dependent DNA hel 99.9 6.6E-25 1.4E-29 276.3 28.2 304 555-1003 24-338 (607)
43 PTZ00424 helicase 45; Provisio 99.9 6.5E-25 1.4E-29 265.5 26.5 320 555-1011 49-375 (401)
44 COG0513 SrmB Superfamily II DN 99.9 2.6E-24 5.6E-29 264.8 31.8 334 553-1023 48-392 (513)
45 TIGR01389 recQ ATP-dependent D 99.9 1.9E-24 4.1E-29 272.9 29.7 304 554-1003 11-326 (591)
46 PLN03137 ATP-dependent DNA hel 99.9 9.5E-25 2.1E-29 275.4 25.8 310 553-1005 457-784 (1195)
47 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.3E-25 2.9E-30 216.8 10.9 106 1218-1323 2-107 (107)
48 KOG0342|consensus 99.9 1.8E-24 3.8E-29 246.0 21.7 321 554-1009 102-436 (543)
49 cd05525 Bromo_ASH1 Bromodomain 99.9 7.1E-25 1.5E-29 210.4 11.3 104 1217-1320 2-105 (106)
50 TIGR03817 DECH_helic helicase/ 99.9 2.9E-23 6.2E-28 265.1 28.2 335 555-1018 35-394 (742)
51 TIGR00580 mfd transcription-re 99.9 4.9E-23 1.1E-27 264.9 30.1 309 553-1009 448-769 (926)
52 TIGR00643 recG ATP-dependent D 99.9 9.7E-23 2.1E-27 257.8 32.4 305 555-1003 234-561 (630)
53 cd05524 Bromo_polybromo_I Brom 99.9 1.1E-24 2.5E-29 212.0 11.4 110 1219-1328 4-113 (113)
54 cd05517 Bromo_polybromo_II Bro 99.9 1.1E-24 2.3E-29 208.6 9.9 100 1219-1318 2-101 (103)
55 cd05515 Bromo_polybromo_V Brom 99.9 1.6E-24 3.5E-29 208.7 10.5 103 1219-1321 2-104 (105)
56 PRK10917 ATP-dependent DNA hel 99.9 1E-22 2.2E-27 259.1 29.8 307 554-1002 259-583 (681)
57 KOG0345|consensus 99.9 8E-23 1.7E-27 230.7 25.2 318 554-1004 26-360 (567)
58 KOG0340|consensus 99.9 3.2E-23 7E-28 226.6 21.0 338 541-1013 14-364 (442)
59 cd05518 Bromo_polybromo_IV Bro 99.9 1.8E-24 3.9E-29 206.8 9.8 101 1219-1319 2-102 (103)
60 PRK10689 transcription-repair 99.9 1.5E-22 3.2E-27 265.9 29.5 309 554-1007 598-916 (1147)
61 cd05520 Bromo_polybromo_III Br 99.9 3.9E-24 8.4E-29 204.7 10.2 99 1221-1319 4-102 (103)
62 cd05519 Bromo_SNF2 Bromodomain 99.9 4.3E-24 9.4E-29 205.5 10.2 103 1218-1320 1-103 (103)
63 KOG0350|consensus 99.9 9.9E-23 2.2E-27 231.1 22.2 362 555-1010 158-540 (620)
64 KOG0328|consensus 99.9 6.6E-23 1.4E-27 217.3 17.9 318 556-1013 49-376 (400)
65 KOG0343|consensus 99.9 1.2E-22 2.6E-27 232.2 20.6 332 555-1024 90-435 (758)
66 PRK11448 hsdR type I restricti 99.9 6.8E-22 1.5E-26 258.7 29.4 355 555-1008 412-816 (1123)
67 PRK13767 ATP-dependent helicas 99.9 4.6E-22 1E-26 259.0 27.3 327 555-1005 31-395 (876)
68 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 2E-23 4.3E-28 200.3 10.6 102 1218-1321 2-103 (106)
69 cd05526 Bromo_polybromo_VI Bro 99.9 2.5E-23 5.4E-28 197.9 11.2 108 1217-1326 3-110 (110)
70 KOG0333|consensus 99.9 3.8E-22 8.2E-27 227.4 21.9 343 555-1010 266-624 (673)
71 cd05496 Bromo_WDR9_II Bromodom 99.9 7.3E-23 1.6E-27 200.1 11.6 105 1215-1325 3-108 (119)
72 cd05505 Bromo_WSTF_like Bromod 99.9 5.1E-23 1.1E-27 194.6 10.0 94 1220-1319 3-96 (97)
73 cd05522 Bromo_Rsc1_2_II Bromod 99.9 5.7E-23 1.2E-27 197.4 10.2 102 1218-1319 2-103 (104)
74 PRK02362 ski2-like helicase; P 99.9 7.4E-21 1.6E-25 245.6 30.3 321 555-1009 22-396 (737)
75 cd05495 Bromo_cbp_like Bromodo 99.9 2E-22 4.3E-27 194.8 11.5 103 1216-1324 2-107 (108)
76 cd05497 Bromo_Brdt_I_like Brom 99.9 2.6E-22 5.5E-27 193.6 11.3 102 1216-1323 4-107 (107)
77 KOG0347|consensus 99.9 1.1E-20 2.4E-25 216.3 26.1 363 556-1034 203-615 (731)
78 KOG0348|consensus 99.9 3.2E-21 7E-26 220.1 21.5 350 556-1023 159-565 (708)
79 KOG0335|consensus 99.9 8.3E-21 1.8E-25 220.6 22.2 320 553-1005 93-441 (482)
80 cd05504 Bromo_Acf1_like Bromod 99.9 7.5E-22 1.6E-26 192.9 11.1 103 1216-1324 11-113 (115)
81 cd05510 Bromo_SPT7_like Bromod 99.9 9.8E-22 2.1E-26 190.5 11.7 105 1215-1324 5-110 (112)
82 cd05507 Bromo_brd8_like Bromod 99.9 9.9E-22 2.2E-26 189.0 11.1 101 1216-1322 2-102 (104)
83 cd05508 Bromo_RACK7 Bromodomai 99.9 1.2E-21 2.5E-26 185.7 10.5 96 1217-1319 3-98 (99)
84 PRK00254 ski2-like helicase; P 99.9 5.3E-20 1.2E-24 237.1 29.4 320 555-1011 22-389 (720)
85 TIGR01587 cas3_core CRISPR-ass 99.9 4E-20 8.7E-25 220.2 26.2 312 578-1022 2-353 (358)
86 KOG0339|consensus 99.9 1E-20 2.2E-25 214.2 19.2 324 554-1013 243-578 (731)
87 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.3E-21 2.8E-26 186.1 9.7 95 1220-1320 3-97 (97)
88 KOG0341|consensus 99.9 2.4E-21 5.3E-26 212.6 13.0 324 556-1018 192-536 (610)
89 PRK01172 ski2-like helicase; P 99.9 7.8E-20 1.7E-24 234.5 29.0 311 555-1007 21-375 (674)
90 COG0514 RecQ Superfamily II DN 99.8 3.1E-20 6.6E-25 223.6 21.9 307 554-1004 15-333 (590)
91 cd05509 Bromo_gcn5_like Bromod 99.8 3.1E-21 6.7E-26 185.6 10.5 100 1218-1323 2-101 (101)
92 TIGR02621 cas3_GSU0051 CRISPR- 99.8 6.8E-20 1.5E-24 229.4 25.0 105 896-1006 270-390 (844)
93 cd05501 Bromo_SP100C_like Brom 99.8 6.7E-21 1.5E-25 179.6 11.2 96 1220-1324 5-100 (102)
94 cd05499 Bromo_BDF1_2_II Bromod 99.8 4.7E-21 1E-25 184.4 10.1 98 1220-1320 3-102 (102)
95 cd05502 Bromo_tif1_like Bromod 99.8 9.6E-21 2.1E-25 184.3 12.2 103 1217-1326 4-109 (109)
96 cd05513 Bromo_brd7_like Bromod 99.8 4.3E-21 9.3E-26 181.5 9.4 94 1218-1317 2-95 (98)
97 cd05528 Bromo_AAA Bromodomain; 99.8 7.4E-21 1.6E-25 184.6 11.2 103 1217-1325 3-109 (112)
98 cd05512 Bromo_brd1_like Bromod 99.8 6.2E-21 1.3E-25 181.0 9.5 93 1218-1316 2-94 (98)
99 cd05511 Bromo_TFIID Bromodomai 99.8 1.1E-20 2.4E-25 184.0 10.1 101 1219-1325 2-102 (112)
100 KOG0336|consensus 99.8 6.1E-20 1.3E-24 203.1 17.2 310 556-1000 242-564 (629)
101 cd05498 Bromo_Brdt_II_like Bro 99.8 1.4E-20 3.1E-25 181.2 10.5 99 1219-1320 2-102 (102)
102 KOG0326|consensus 99.8 8.6E-21 1.9E-25 204.3 9.5 314 556-1009 107-428 (459)
103 KOG4284|consensus 99.8 2.8E-20 6.1E-25 215.6 14.0 315 556-999 47-370 (980)
104 TIGR03714 secA2 accessory Sec 99.8 2.1E-18 4.5E-23 214.2 30.6 400 557-1002 69-531 (762)
105 cd05506 Bromo_plant1 Bromodoma 99.8 2.5E-20 5.4E-25 178.7 9.7 96 1219-1320 2-99 (99)
106 COG1200 RecG RecG-like helicas 99.8 1.3E-18 2.8E-23 208.6 26.0 301 555-999 261-582 (677)
107 cd05500 Bromo_BDF1_2_I Bromodo 99.8 5E-20 1.1E-24 177.3 10.8 97 1217-1319 4-102 (103)
108 TIGR00348 hsdR type I site-spe 99.8 4.4E-18 9.5E-23 215.9 30.7 370 553-1008 235-649 (667)
109 PRK09401 reverse gyrase; Revie 99.8 1.5E-18 3.2E-23 228.9 26.8 297 553-996 77-432 (1176)
110 COG1201 Lhr Lhr-like helicases 99.8 2.2E-18 4.8E-23 214.7 26.2 336 554-1026 20-376 (814)
111 PRK09200 preprotein translocas 99.8 1.4E-17 3E-22 208.9 32.5 131 879-1019 409-547 (790)
112 cd05529 Bromo_WDR9_I_like Brom 99.8 1.5E-19 3.3E-24 180.2 11.1 102 1217-1321 24-126 (128)
113 KOG0332|consensus 99.8 9.7E-19 2.1E-23 192.7 17.7 316 556-1010 112-443 (477)
114 PRK09751 putative ATP-dependen 99.8 2.2E-18 4.8E-23 227.4 23.6 96 897-995 243-371 (1490)
115 PHA02653 RNA helicase NPH-II; 99.8 9E-18 1.9E-22 209.8 27.3 328 551-1012 155-516 (675)
116 PRK12898 secA preprotein trans 99.8 3.3E-17 7.2E-22 201.5 31.1 130 880-1019 455-592 (656)
117 TIGR00963 secA preprotein tran 99.8 4.8E-18 1E-22 209.5 21.6 118 881-1003 388-512 (745)
118 COG4096 HsdR Type I site-speci 99.8 2.6E-18 5.7E-23 207.8 18.5 354 553-1008 162-546 (875)
119 KOG0346|consensus 99.8 3.3E-18 7.2E-23 191.9 17.1 315 559-1009 44-409 (569)
120 KOG1474|consensus 99.8 4.3E-19 9.3E-24 221.8 11.2 106 1215-1326 220-327 (640)
121 smart00297 BROMO bromo domain. 99.8 1.2E-18 2.5E-23 170.2 11.1 101 1217-1323 7-107 (107)
122 KOG0334|consensus 99.8 9E-18 2E-22 207.7 20.9 317 554-1009 385-719 (997)
123 TIGR03158 cas3_cyano CRISPR-as 99.8 5.3E-17 1.1E-21 192.2 25.9 85 897-993 271-357 (357)
124 TIGR01054 rgy reverse gyrase. 99.7 1.8E-16 3.9E-21 209.7 27.6 131 553-691 75-213 (1171)
125 KOG0344|consensus 99.7 4.1E-17 8.8E-22 190.8 18.1 317 555-1009 157-494 (593)
126 PRK05580 primosome assembly pr 99.7 5.1E-16 1.1E-20 197.2 29.8 152 556-717 144-305 (679)
127 COG1205 Distinct helicase fami 99.7 1.3E-16 2.8E-21 204.7 24.1 333 556-1020 70-432 (851)
128 KOG0327|consensus 99.7 4.3E-17 9.3E-22 182.1 16.4 317 556-1011 48-371 (397)
129 PRK14701 reverse gyrase; Provi 99.7 4.5E-16 9.8E-21 209.5 26.5 303 553-1001 76-449 (1638)
130 COG1204 Superfamily II helicas 99.7 1.7E-16 3.8E-21 200.8 20.8 310 556-998 31-396 (766)
131 cd05492 Bromo_ZMYND11 Bromodom 99.7 3.3E-17 7.1E-22 157.1 10.7 98 1221-1323 4-106 (109)
132 TIGR01970 DEAH_box_HrpB ATP-de 99.7 3.4E-16 7.3E-21 200.3 23.2 107 898-1010 209-336 (819)
133 cd04369 Bromodomain Bromodomai 99.7 2.3E-17 5E-22 158.2 9.5 97 1219-1319 2-98 (99)
134 PF00439 Bromodomain: Bromodom 99.7 2.4E-17 5.2E-22 153.4 8.9 84 1222-1311 1-84 (84)
135 TIGR00595 priA primosomal prot 99.7 1.4E-15 3.1E-20 186.7 25.0 297 579-1010 1-383 (505)
136 COG5076 Transcription factor i 99.7 3.9E-17 8.5E-22 193.8 10.0 113 1214-1326 139-251 (371)
137 PRK11664 ATP-dependent RNA hel 99.7 1.7E-15 3.7E-20 194.3 22.7 107 898-1010 212-339 (812)
138 KOG0337|consensus 99.7 7.3E-16 1.6E-20 172.6 16.7 317 556-1011 43-369 (529)
139 COG1197 Mfd Transcription-repa 99.7 1.3E-14 2.7E-19 183.5 27.9 312 553-1009 591-912 (1139)
140 COG4889 Predicted helicase [Ge 99.7 5.1E-16 1.1E-20 184.9 14.0 158 554-716 159-350 (1518)
141 PRK13104 secA preprotein trans 99.6 4E-14 8.7E-19 177.3 30.3 406 552-1004 78-583 (896)
142 PF04851 ResIII: Type III rest 99.6 7E-16 1.5E-20 165.1 12.9 154 555-717 2-183 (184)
143 cd00079 HELICc Helicase superf 99.6 7.8E-16 1.7E-20 155.2 12.3 120 882-1004 12-131 (131)
144 KOG0351|consensus 99.6 2.3E-15 4.9E-20 191.8 18.9 314 553-1008 261-592 (941)
145 PRK09694 helicase Cas3; Provis 99.6 8E-15 1.7E-19 187.6 23.9 109 886-998 549-665 (878)
146 TIGR00631 uvrb excinuclease AB 99.6 3.8E-14 8.1E-19 178.1 29.1 135 879-1019 423-564 (655)
147 COG1202 Superfamily II helicas 99.6 1.6E-14 3.4E-19 167.0 19.1 313 555-1010 215-553 (830)
148 PRK12906 secA preprotein trans 99.6 1.9E-13 4.2E-18 170.7 29.8 119 880-1003 422-548 (796)
149 PRK05298 excinuclease ABC subu 99.6 5.5E-13 1.2E-17 169.1 34.3 124 880-1009 428-556 (652)
150 KOG0352|consensus 99.6 2.4E-14 5.1E-19 160.2 19.1 322 558-1005 22-359 (641)
151 COG4098 comFA Superfamily II D 99.6 8.3E-13 1.8E-17 145.2 29.3 317 552-1011 93-417 (441)
152 PRK12904 preprotein translocas 99.6 5.6E-13 1.2E-17 167.2 30.0 120 880-1004 412-569 (830)
153 KOG0353|consensus 99.6 4.4E-14 9.6E-19 155.2 16.6 312 556-1007 94-466 (695)
154 PRK11131 ATP-dependent RNA hel 99.6 2.2E-13 4.9E-18 177.5 25.5 107 898-1012 286-413 (1294)
155 PRK13107 preprotein translocas 99.5 2.5E-12 5.5E-17 160.8 30.4 120 880-1004 431-587 (908)
156 KOG0952|consensus 99.5 4E-13 8.7E-18 165.2 21.5 335 556-1023 110-517 (1230)
157 KOG1245|consensus 99.5 1.3E-14 2.8E-19 191.4 8.6 97 1222-1325 1306-1402(1404)
158 smart00487 DEXDc DEAD-like hel 99.5 1.6E-13 3.4E-18 147.9 15.1 159 554-719 6-173 (201)
159 PF00271 Helicase_C: Helicase 99.5 2E-14 4.3E-19 131.7 5.9 78 916-996 1-78 (78)
160 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1.1E-12 2.4E-17 171.9 22.9 107 898-1012 279-406 (1283)
161 PRK12900 secA preprotein trans 99.5 2.6E-12 5.5E-17 161.2 23.2 116 881-1001 581-704 (1025)
162 cd00046 DEXDc DEAD-like helica 99.4 7.2E-13 1.6E-17 134.2 13.0 137 577-716 2-144 (144)
163 COG1203 CRISPR-associated heli 99.4 2.8E-12 6E-17 164.9 19.8 350 553-1028 192-570 (733)
164 PRK12899 secA preprotein trans 99.4 7.3E-11 1.6E-15 148.1 29.4 119 880-1004 550-677 (970)
165 PF00270 DEAD: DEAD/DEAH box h 99.4 4.5E-12 9.8E-17 134.0 14.6 157 559-722 2-167 (169)
166 cd00268 DEADc DEAD-box helicas 99.4 7.1E-12 1.5E-16 137.0 16.4 156 556-717 21-185 (203)
167 KOG0329|consensus 99.4 4.4E-12 9.6E-17 133.7 12.1 150 556-715 64-226 (387)
168 smart00490 HELICc helicase sup 99.4 1.4E-12 3.1E-17 119.8 7.5 81 913-996 2-82 (82)
169 KOG1924|consensus 99.3 3.7E-12 8.1E-17 150.8 10.3 15 190-204 607-621 (1102)
170 KOG0947|consensus 99.3 1.7E-10 3.7E-15 140.8 23.3 377 549-1011 290-723 (1248)
171 COG0556 UvrB Helicase subunit 99.3 1.7E-09 3.8E-14 125.7 29.5 139 881-1023 429-572 (663)
172 PRK12326 preprotein translocas 99.3 3E-09 6.5E-14 130.8 31.8 120 880-1004 409-543 (764)
173 KOG1827|consensus 99.3 6.4E-12 1.4E-16 150.9 8.1 109 1213-1321 48-156 (629)
174 TIGR01407 dinG_rel DnaQ family 99.3 5.7E-10 1.2E-14 146.6 26.9 84 554-640 243-332 (850)
175 KOG0951|consensus 99.2 1.7E-10 3.8E-15 143.8 18.7 175 554-736 307-502 (1674)
176 COG1110 Reverse gyrase [DNA re 99.2 1.5E-09 3.3E-14 134.4 25.9 129 553-689 79-215 (1187)
177 PRK13103 secA preprotein trans 99.2 3E-09 6.6E-14 133.8 25.1 121 879-1004 430-587 (913)
178 KOG0349|consensus 99.1 4.4E-10 9.5E-15 126.3 13.8 94 899-995 506-602 (725)
179 KOG1472|consensus 99.1 3.9E-11 8.5E-16 146.5 5.4 101 1217-1323 606-706 (720)
180 COG0610 Type I site-specific r 99.1 3.5E-09 7.7E-14 138.9 21.5 143 574-722 272-419 (962)
181 PRK12903 secA preprotein trans 99.1 4.3E-08 9.4E-13 122.2 29.2 120 880-1004 408-535 (925)
182 PF07529 HSA: HSA; InterPro: 99.1 2.7E-10 5.9E-15 102.9 7.4 71 299-369 3-73 (73)
183 smart00573 HSA domain in helic 99.1 2.6E-10 5.6E-15 102.4 7.0 69 301-369 5-73 (73)
184 COG1198 PriA Primosomal protei 99.0 9.1E-09 2E-13 128.8 20.6 376 556-1012 198-607 (730)
185 COG4581 Superfamily II RNA hel 99.0 9.2E-09 2E-13 131.3 20.9 161 552-748 115-282 (1041)
186 PF11496 HDA2-3: Class II hist 99.0 2.3E-09 5E-14 122.4 11.7 221 795-1021 4-256 (297)
187 PF14619 SnAC: Snf2-ATP coupli 99.0 1.9E-10 4.2E-15 103.1 2.1 57 1100-1158 17-74 (74)
188 TIGR00596 rad1 DNA repair prot 98.9 1.8E-08 4E-13 128.7 19.2 80 655-734 7-92 (814)
189 KOG0948|consensus 98.9 3.9E-08 8.6E-13 117.9 17.5 361 553-1016 126-544 (1041)
190 KOG0950|consensus 98.9 3.9E-08 8.6E-13 121.8 17.6 154 556-720 223-391 (1008)
191 TIGR00604 rad3 DNA repair heli 98.9 2.2E-07 4.7E-12 120.2 25.3 73 555-627 9-82 (705)
192 CHL00122 secA preprotein trans 98.8 5.6E-07 1.2E-11 113.3 26.8 85 880-968 406-491 (870)
193 PRK08074 bifunctional ATP-depe 98.8 9.9E-07 2.1E-11 116.9 29.8 95 886-983 739-839 (928)
194 PRK07246 bifunctional ATP-depe 98.8 1.4E-06 3.1E-11 113.4 28.2 89 886-980 635-725 (820)
195 KOG0949|consensus 98.7 2.1E-07 4.6E-12 114.6 18.0 162 556-729 511-682 (1330)
196 PF13872 AAA_34: P-loop contai 98.7 9.3E-08 2E-12 107.2 13.9 235 553-813 34-302 (303)
197 PF08880 QLQ: QLQ; InterPro: 98.7 8.1E-09 1.7E-13 78.4 3.7 36 90-125 1-36 (37)
198 TIGR03117 cas_csf4 CRISPR-asso 98.7 3.5E-06 7.6E-11 105.3 28.9 68 561-629 2-70 (636)
199 PRK12901 secA preprotein trans 98.7 1.7E-06 3.7E-11 109.8 25.2 120 880-1004 610-737 (1112)
200 KOG0955|consensus 98.7 1.7E-08 3.7E-13 129.0 7.4 104 1216-1325 564-667 (1051)
201 COG1199 DinG Rad3-related DNA 98.7 1.1E-06 2.4E-11 113.4 23.8 81 896-981 477-560 (654)
202 PRK12902 secA preprotein trans 98.6 1.3E-05 2.8E-10 101.1 30.0 85 880-968 421-506 (939)
203 KOG1513|consensus 98.6 5.6E-07 1.2E-11 108.3 16.9 89 942-1033 851-947 (1300)
204 cd05494 Bromodomain_1 Bromodom 98.6 2.1E-08 4.6E-13 98.1 4.1 75 1221-1299 4-80 (114)
205 cd05491 Bromo_TBP7_like Bromod 98.6 2.5E-08 5.5E-13 95.6 4.3 41 1262-1302 63-103 (119)
206 KOG0920|consensus 98.6 3.4E-06 7.5E-11 107.2 23.3 126 882-1013 395-547 (924)
207 COG1643 HrpA HrpA-like helicas 98.6 4E-06 8.7E-11 107.1 23.2 109 899-1013 260-390 (845)
208 KOG0926|consensus 98.5 1.6E-05 3.6E-10 96.6 25.0 80 924-1009 606-703 (1172)
209 KOG0922|consensus 98.5 9.1E-06 2E-10 98.4 22.3 111 900-1013 260-393 (674)
210 PRK15483 type III restriction- 98.5 1.1E-06 2.4E-11 112.4 15.0 187 558-752 8-278 (986)
211 PF02399 Herpes_ori_bp: Origin 98.5 4.7E-06 1E-10 104.0 18.9 112 883-1005 268-385 (824)
212 PRK11747 dinG ATP-dependent DN 98.5 5.1E-05 1.1E-09 97.8 29.0 89 885-980 521-616 (697)
213 KOG0924|consensus 98.4 1.1E-05 2.3E-10 96.6 19.6 91 922-1018 597-705 (1042)
214 KOG0008|consensus 98.4 2E-07 4.4E-12 118.0 5.4 78 1240-1317 1399-1476(1563)
215 PF07652 Flavi_DEAD: Flaviviru 98.4 2.6E-06 5.6E-11 85.6 11.6 130 575-717 4-137 (148)
216 KOG0008|consensus 98.3 5.4E-07 1.2E-11 114.3 6.5 94 1217-1316 1261-1354(1563)
217 smart00489 DEXDc3 DEAD-like he 98.2 1.1E-05 2.5E-10 92.9 13.5 75 554-628 6-84 (289)
218 smart00488 DEXDc2 DEAD-like he 98.2 1.1E-05 2.5E-10 92.9 13.5 75 554-628 6-84 (289)
219 PHA03247 large tegument protei 98.2 1.2E-05 2.7E-10 107.6 14.8 8 618-625 3004-3011(3151)
220 TIGR02562 cas3_yersinia CRISPR 98.1 0.00057 1.2E-08 88.0 27.5 48 950-1000 837-884 (1110)
221 KOG0923|consensus 98.1 0.0014 3E-08 79.1 28.8 102 900-1009 475-605 (902)
222 KOG1472|consensus 98.1 1.3E-06 2.8E-11 107.7 3.9 70 1241-1310 304-373 (720)
223 PRK14873 primosome assembly pr 98.1 9.1E-05 2E-09 94.0 20.4 126 584-717 169-304 (665)
224 PF13871 Helicase_C_4: Helicas 98.1 1E-05 2.2E-10 90.9 9.2 92 939-1033 52-151 (278)
225 KOG0953|consensus 98.0 2.3E-05 5.1E-10 92.3 11.0 156 837-1000 299-466 (700)
226 KOG4150|consensus 97.9 3.4E-05 7.4E-10 90.3 10.1 114 881-997 508-629 (1034)
227 PF13086 AAA_11: AAA domain; P 97.9 9.4E-05 2E-09 82.2 13.6 68 556-627 1-75 (236)
228 COG0653 SecA Preprotein transl 97.9 0.00086 1.9E-08 84.9 22.8 116 879-999 410-536 (822)
229 KOG1828|consensus 97.7 2.6E-05 5.6E-10 88.2 3.8 73 1241-1314 226-298 (418)
230 KOG1474|consensus 97.6 1.7E-05 3.7E-10 100.4 1.8 92 1238-1329 7-100 (640)
231 KOG1828|consensus 97.6 8.2E-06 1.8E-10 92.1 -1.4 81 1241-1321 37-117 (418)
232 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0018 3.9E-08 73.1 12.2 122 552-689 73-209 (266)
233 PRK10536 hypothetical protein; 97.3 0.0043 9.3E-08 69.2 14.2 145 557-722 60-218 (262)
234 COG3587 Restriction endonuclea 97.3 0.0011 2.5E-08 82.3 10.5 137 572-715 71-241 (985)
235 PF02562 PhoH: PhoH-like prote 97.2 0.0024 5.3E-08 69.3 11.2 147 557-722 5-161 (205)
236 KOG0925|consensus 97.2 0.0027 5.9E-08 74.2 12.1 59 953-1013 315-390 (699)
237 PF09848 DUF2075: Uncharacteri 97.1 0.0018 4E-08 77.1 9.7 90 579-691 5-97 (352)
238 KOG1802|consensus 97.0 0.0042 9.1E-08 75.1 11.3 132 555-696 409-587 (935)
239 KOG1131|consensus 96.9 0.0098 2.1E-07 70.2 13.1 67 549-615 9-75 (755)
240 PF13604 AAA_30: AAA domain; P 96.9 0.0098 2.1E-07 64.7 12.4 126 556-718 1-132 (196)
241 KOG1803|consensus 96.7 0.006 1.3E-07 73.9 9.4 68 552-625 181-249 (649)
242 PF13892 DBINO: DNA-binding do 96.7 0.0056 1.2E-07 61.1 7.7 74 329-406 61-134 (139)
243 COG0553 HepA Superfamily II DN 96.7 0.00081 1.8E-08 90.1 2.5 182 554-738 82-289 (866)
244 TIGR00376 DNA helicase, putati 96.5 0.026 5.6E-07 72.2 14.4 69 553-627 154-223 (637)
245 KOG1132|consensus 96.5 0.016 3.6E-07 72.8 11.7 89 899-988 562-664 (945)
246 PF13307 Helicase_C_2: Helicas 96.5 0.0032 7E-08 66.7 4.9 78 896-980 7-92 (167)
247 PF12340 DUF3638: Protein of u 96.3 0.0079 1.7E-07 65.9 7.0 73 554-629 21-93 (229)
248 PF06862 DUF1253: Protein of u 96.3 0.11 2.3E-06 62.7 17.1 128 880-1009 279-414 (442)
249 cd00009 AAA The AAA+ (ATPases 96.1 0.042 9.2E-07 55.5 10.8 54 564-620 6-61 (151)
250 KOG4849|consensus 95.9 1.6 3.5E-05 49.4 22.3 19 200-218 363-381 (498)
251 PF13401 AAA_22: AAA domain; P 95.9 0.006 1.3E-07 61.4 3.5 116 575-716 4-125 (131)
252 smart00592 BRK domain in trans 95.9 0.0057 1.2E-07 49.2 2.5 41 450-490 3-43 (45)
253 PRK12723 flagellar biosynthesi 95.8 0.12 2.7E-06 61.8 14.3 131 576-731 175-312 (388)
254 KOG0951|consensus 95.8 0.026 5.6E-07 73.0 8.8 111 571-694 1155-1270(1674)
255 PF07533 BRK: BRK domain; Int 95.8 0.0021 4.5E-08 51.9 -0.6 41 449-489 4-44 (46)
256 KOG1923|consensus 95.7 0.028 6E-07 69.5 8.1 14 64-77 210-223 (830)
257 PRK04296 thymidine kinase; Pro 95.6 0.025 5.4E-07 61.2 6.8 34 578-614 5-38 (190)
258 TIGR01448 recD_rel helicase, p 95.4 0.13 2.8E-06 67.0 13.8 135 554-719 321-455 (720)
259 COG1875 NYN ribonuclease and A 95.4 0.054 1.2E-06 62.3 8.9 144 559-719 231-390 (436)
260 KOG4849|consensus 95.3 0.2 4.2E-06 56.4 12.4 7 241-247 397-403 (498)
261 TIGR01447 recD exodeoxyribonuc 95.3 0.15 3.3E-06 64.5 13.1 140 559-719 148-298 (586)
262 COG3421 Uncharacterized protei 95.2 0.016 3.6E-07 69.7 4.0 106 581-689 3-124 (812)
263 PRK06526 transposase; Provisio 95.1 0.054 1.2E-06 61.4 7.7 108 564-716 91-201 (254)
264 smart00382 AAA ATPases associa 95.1 0.052 1.1E-06 54.2 6.9 43 576-621 3-45 (148)
265 PLN03025 replication factor C 94.9 0.27 5.8E-06 57.9 13.2 25 577-601 36-60 (319)
266 PRK09112 DNA polymerase III su 94.9 0.061 1.3E-06 63.8 7.7 42 561-602 28-72 (351)
267 PRK07003 DNA polymerase III su 94.7 0.17 3.6E-06 64.5 11.1 42 561-602 21-65 (830)
268 PRK07952 DNA replication prote 94.7 0.31 6.7E-06 54.8 12.4 44 577-627 101-144 (244)
269 TIGR03420 DnaA_homol_Hda DnaA 94.6 0.18 3.9E-06 56.0 10.2 93 574-716 37-132 (226)
270 KOG1805|consensus 94.5 0.15 3.2E-06 65.2 10.0 127 555-692 668-811 (1100)
271 PRK14956 DNA polymerase III su 94.5 0.097 2.1E-06 63.8 8.1 42 561-602 23-67 (484)
272 PRK10875 recD exonuclease V su 94.3 0.24 5.2E-06 62.9 11.5 142 557-719 153-304 (615)
273 COG5076 Transcription factor i 94.2 0.019 4.2E-07 68.8 1.5 86 1238-1323 278-363 (371)
274 TIGR02881 spore_V_K stage V sp 94.2 0.1 2.2E-06 59.5 7.3 28 576-603 43-70 (261)
275 PRK08116 hypothetical protein; 94.1 0.4 8.6E-06 54.9 11.7 36 575-613 114-149 (268)
276 PRK08181 transposase; Validate 94.1 0.38 8.2E-06 54.9 11.4 45 558-602 89-133 (269)
277 PF06465 DUF1087: Domain of Un 94.0 0.045 9.7E-07 47.5 2.9 42 1107-1152 21-62 (66)
278 KOG0989|consensus 94.0 0.13 2.9E-06 58.0 7.2 42 560-601 40-83 (346)
279 PRK05703 flhF flagellar biosyn 93.8 0.73 1.6E-05 56.3 13.9 130 576-732 222-358 (424)
280 PRK12323 DNA polymerase III su 93.8 0.48 1E-05 59.6 12.3 25 578-602 41-65 (700)
281 PRK06835 DNA replication prote 93.7 0.46 9.9E-06 55.9 11.6 48 555-602 159-210 (329)
282 PRK11889 flhF flagellar biosyn 93.7 0.99 2.1E-05 53.7 14.0 127 577-731 243-377 (436)
283 PRK07764 DNA polymerase III su 93.6 0.53 1.1E-05 61.9 12.9 26 578-603 40-65 (824)
284 KOG0442|consensus 93.5 7.4 0.00016 49.8 21.7 45 876-920 346-400 (892)
285 PRK08727 hypothetical protein; 93.4 0.33 7.1E-06 54.4 9.4 25 578-602 44-68 (233)
286 PRK08084 DNA replication initi 93.3 0.39 8.4E-06 53.9 9.8 26 576-601 46-71 (235)
287 PRK05707 DNA polymerase III su 93.3 0.34 7.4E-06 57.1 9.6 48 556-603 3-50 (328)
288 PF13245 AAA_19: Part of AAA d 93.2 0.28 6E-06 44.7 6.8 45 576-620 11-56 (76)
289 PTZ00112 origin recognition co 93.2 0.62 1.3E-05 59.9 11.9 46 557-602 759-808 (1164)
290 PRK12402 replication factor C 93.1 0.26 5.5E-06 58.3 8.4 40 562-601 21-62 (337)
291 PRK00149 dnaA chromosomal repl 93.1 0.56 1.2E-05 58.0 11.6 99 578-715 151-252 (450)
292 PF00448 SRP54: SRP54-type pro 93.1 0.27 5.9E-06 53.5 7.8 130 578-729 4-138 (196)
293 PRK15319 AIDA autotransporter- 93.1 0.12 2.6E-06 70.0 5.8 7 90-96 1635-1641(2039)
294 COG1484 DnaC DNA replication p 92.9 0.75 1.6E-05 52.2 11.3 62 561-625 91-152 (254)
295 KOG0991|consensus 92.9 0.2 4.4E-06 54.2 6.2 29 573-601 46-74 (333)
296 PRK15319 AIDA autotransporter- 92.9 0.13 2.8E-06 69.7 5.7 6 610-615 1910-1915(2039)
297 PRK07994 DNA polymerase III su 92.8 0.81 1.8E-05 58.3 12.5 42 561-602 21-65 (647)
298 smart00492 HELICc3 helicase su 92.8 0.4 8.6E-06 49.2 8.1 53 925-980 25-79 (141)
299 PRK06921 hypothetical protein; 92.8 0.45 9.8E-06 54.4 9.5 28 575-602 117-144 (266)
300 TIGR00362 DnaA chromosomal rep 92.8 0.62 1.3E-05 56.8 11.3 99 578-715 139-240 (405)
301 PF13177 DNA_pol3_delta2: DNA 92.7 1.5 3.2E-05 46.2 12.4 45 561-605 2-49 (162)
302 PRK14722 flhF flagellar biosyn 92.6 0.95 2.1E-05 54.0 11.9 125 574-725 136-266 (374)
303 PRK14960 DNA polymerase III su 92.5 0.6 1.3E-05 58.9 10.6 42 561-602 20-64 (702)
304 PRK14949 DNA polymerase III su 92.5 0.5 1.1E-05 61.4 10.1 24 579-602 42-65 (944)
305 PRK14952 DNA polymerase III su 92.5 0.45 9.8E-06 60.1 9.6 42 561-602 18-62 (584)
306 cd05493 Bromo_ALL-1 Bromodomai 92.3 0.26 5.6E-06 49.2 5.6 63 1263-1325 59-121 (131)
307 CHL00181 cbbX CbbX; Provisiona 92.2 0.24 5.3E-06 57.2 6.3 28 576-603 60-87 (287)
308 PRK14086 dnaA chromosomal repl 92.1 0.96 2.1E-05 57.0 11.7 99 578-715 317-418 (617)
309 PRK14958 DNA polymerase III su 92.1 0.89 1.9E-05 56.8 11.5 43 561-603 21-66 (509)
310 PRK14951 DNA polymerase III su 92.0 0.7 1.5E-05 58.7 10.5 42 561-602 21-65 (618)
311 PRK14087 dnaA chromosomal repl 92.0 1.2 2.6E-05 54.9 12.3 101 578-715 144-247 (450)
312 PRK06645 DNA polymerase III su 91.9 0.87 1.9E-05 56.7 11.0 42 561-602 26-70 (507)
313 PRK14088 dnaA chromosomal repl 91.9 0.85 1.9E-05 56.1 10.9 101 577-715 132-235 (440)
314 KOG1133|consensus 91.8 11 0.00025 47.2 19.7 327 622-980 299-720 (821)
315 PRK05642 DNA replication initi 91.8 0.78 1.7E-05 51.4 9.6 38 678-715 98-138 (234)
316 TIGR02880 cbbX_cfxQ probable R 91.8 0.26 5.7E-06 56.9 6.0 39 575-613 58-97 (284)
317 TIGR02768 TraA_Ti Ti-type conj 91.7 1.1 2.4E-05 58.7 12.1 129 554-718 350-478 (744)
318 PRK06893 DNA replication initi 91.7 1 2.2E-05 50.3 10.4 25 578-602 42-66 (229)
319 PRK08769 DNA polymerase III su 91.6 1.5 3.2E-05 51.5 11.9 49 555-603 3-54 (319)
320 PRK08903 DnaA regulatory inact 91.5 1.1 2.4E-05 49.8 10.5 28 574-601 41-68 (227)
321 PF13173 AAA_14: AAA domain 91.4 1.2 2.6E-05 44.7 9.7 38 677-716 61-98 (128)
322 PRK14957 DNA polymerase III su 91.3 1.2 2.6E-05 55.8 11.4 42 561-602 21-65 (546)
323 PRK07940 DNA polymerase III su 91.2 0.78 1.7E-05 55.4 9.4 26 578-603 39-64 (394)
324 cd01124 KaiC KaiC is a circadi 91.2 0.23 5E-06 53.2 4.5 48 578-628 2-49 (187)
325 smart00491 HELICc2 helicase su 91.2 0.55 1.2E-05 48.3 7.0 69 911-980 4-80 (142)
326 PRK08451 DNA polymerase III su 91.1 1.2 2.5E-05 55.7 10.9 43 561-603 19-64 (535)
327 PHA03333 putative ATPase subun 91.1 2.6 5.6E-05 53.3 13.7 141 558-717 171-332 (752)
328 PHA02533 17 large terminase pr 91.0 1.5 3.3E-05 55.0 11.9 146 554-717 57-210 (534)
329 PRK14964 DNA polymerase III su 91.0 1.5 3.3E-05 54.2 11.7 27 577-603 37-63 (491)
330 PRK14963 DNA polymerase III su 90.9 1.4 3.1E-05 55.0 11.5 43 561-603 19-64 (504)
331 PRK06871 DNA polymerase III su 90.8 1.9 4.1E-05 50.7 11.7 48 556-603 2-52 (325)
332 PRK07471 DNA polymerase III su 90.7 0.81 1.8E-05 54.7 8.8 43 561-603 24-69 (365)
333 PRK14948 DNA polymerase III su 90.7 1.3 2.8E-05 56.7 11.0 42 561-602 21-65 (620)
334 PRK14961 DNA polymerase III su 90.7 1.6 3.5E-05 52.3 11.4 41 561-601 21-64 (363)
335 KOG1984|consensus 90.4 1.3 2.8E-05 56.2 10.2 7 193-199 237-243 (1007)
336 PRK08691 DNA polymerase III su 90.4 2.4 5.1E-05 54.2 12.8 42 561-602 21-65 (709)
337 PRK07993 DNA polymerase III su 90.3 1.1 2.3E-05 53.0 9.3 48 556-603 2-52 (334)
338 PRK12377 putative replication 90.1 2.2 4.7E-05 48.2 11.1 27 576-602 102-128 (248)
339 KOG0307|consensus 90.1 2.5 5.4E-05 55.2 12.6 11 320-330 1025-1035(1049)
340 PRK14969 DNA polymerase III su 90.1 1.8 3.9E-05 54.5 11.4 42 561-602 21-65 (527)
341 KOG2391|consensus 90.0 37 0.0008 39.3 20.2 10 322-331 332-341 (365)
342 PRK05563 DNA polymerase III su 89.9 1.8 3.9E-05 54.8 11.5 26 578-603 41-66 (559)
343 PRK14974 cell division protein 89.9 2.1 4.7E-05 50.4 11.3 34 578-614 143-176 (336)
344 PF00004 AAA: ATPase family as 89.9 1 2.2E-05 44.8 7.6 36 579-620 2-37 (132)
345 PF00308 Bac_DnaA: Bacterial d 89.8 1.6 3.5E-05 48.4 9.7 39 677-715 97-138 (219)
346 PRK12727 flagellar biosynthesi 89.6 4.6 0.0001 50.1 14.0 38 575-613 350-387 (559)
347 TIGR03015 pepcterm_ATPase puta 89.5 2.1 4.6E-05 48.7 10.8 41 559-599 26-67 (269)
348 PRK00440 rfc replication facto 89.4 3.8 8.2E-05 47.9 13.1 24 577-600 40-63 (319)
349 PF05621 TniB: Bacterial TniB 89.4 1.9 4.2E-05 49.5 9.9 38 559-596 40-82 (302)
350 PRK06090 DNA polymerase III su 89.3 1.9 4.1E-05 50.5 10.1 48 556-603 3-53 (319)
351 PRK04195 replication factor C 89.3 2.8 6.2E-05 52.3 12.4 25 575-599 39-63 (482)
352 PRK09111 DNA polymerase III su 89.2 1.9 4.2E-05 54.8 10.8 43 561-603 29-74 (598)
353 PRK14955 DNA polymerase III su 89.1 3.4 7.4E-05 50.2 12.6 42 561-602 21-65 (397)
354 PHA02544 44 clamp loader, smal 89.1 3.2 7E-05 48.6 12.1 23 577-599 44-67 (316)
355 PRK13889 conjugal transfer rel 89.0 2.3 4.9E-05 56.9 11.7 130 554-719 344-473 (988)
356 COG0470 HolB ATPase involved i 88.8 1.7 3.7E-05 51.0 9.5 27 578-604 27-53 (325)
357 TIGR02928 orc1/cdc6 family rep 88.6 2.2 4.8E-05 51.1 10.5 45 558-602 20-67 (365)
358 KOG0952|consensus 88.6 0.43 9.4E-06 61.5 4.4 113 572-692 940-1061(1230)
359 PRK14954 DNA polymerase III su 88.4 1.8 3.9E-05 55.2 9.8 42 561-602 21-65 (620)
360 PRK05896 DNA polymerase III su 88.4 3 6.6E-05 52.6 11.6 43 561-603 21-66 (605)
361 PRK14962 DNA polymerase III su 88.3 2.6 5.6E-05 52.2 10.9 24 578-601 39-62 (472)
362 PRK06647 DNA polymerase III su 88.3 2.1 4.6E-05 54.2 10.3 42 561-602 21-65 (563)
363 PF05308 Mito_fiss_reg: Mitoch 88.3 1.3 2.8E-05 49.8 7.5 20 95-114 129-148 (253)
364 PRK08058 DNA polymerase III su 88.2 2 4.4E-05 50.7 9.6 135 560-715 10-148 (329)
365 PRK12422 chromosomal replicati 88.1 1.6 3.5E-05 53.6 9.0 98 577-715 143-243 (445)
366 TIGR03345 VI_ClpV1 type VI sec 88.1 2.6 5.6E-05 56.2 11.4 40 561-600 192-233 (852)
367 KOG0737|consensus 87.9 0.77 1.7E-05 53.4 5.5 50 573-628 125-174 (386)
368 PRK14959 DNA polymerase III su 87.8 3.2 7E-05 52.6 11.4 25 578-602 41-65 (624)
369 PRK00411 cdc6 cell division co 87.7 5.8 0.00013 48.0 13.5 28 576-603 56-83 (394)
370 PRK10865 protein disaggregatio 87.6 2.1 4.5E-05 57.2 10.1 40 561-600 183-224 (857)
371 PRK06964 DNA polymerase III su 87.4 2.8 6E-05 49.6 9.9 47 557-603 2-49 (342)
372 PRK14953 DNA polymerase III su 87.3 4.2 9.2E-05 50.6 11.9 41 561-601 21-64 (486)
373 COG0593 DnaA ATPase involved i 87.2 2.3 5E-05 51.1 9.2 54 677-730 175-235 (408)
374 KOG1925|consensus 87.2 3.1 6.6E-05 49.4 9.7 19 231-249 319-337 (817)
375 PRK14965 DNA polymerase III su 86.9 3.4 7.4E-05 52.6 11.1 42 561-602 21-65 (576)
376 PF00580 UvrD-helicase: UvrD/R 86.7 1.1 2.3E-05 52.1 6.1 65 557-627 1-67 (315)
377 KOG0559|consensus 86.6 5.9 0.00013 45.6 11.3 17 207-223 233-249 (457)
378 PRK07133 DNA polymerase III su 86.6 3.8 8.1E-05 52.9 11.1 42 561-602 23-67 (725)
379 COG3267 ExeA Type II secretory 86.4 5.3 0.00012 44.6 10.7 47 577-627 53-105 (269)
380 PHA03368 DNA packaging termina 86.4 1.4 3E-05 55.4 6.9 125 579-715 258-389 (738)
381 cd01120 RecA-like_NTPases RecA 86.4 2.7 5.9E-05 43.3 8.4 36 579-617 3-38 (165)
382 KOG0307|consensus 86.2 7.4 0.00016 51.1 13.3 16 390-405 1027-1042(1049)
383 PF07015 VirC1: VirC1 protein; 86.2 5 0.00011 44.5 10.4 39 585-626 12-52 (231)
384 TIGR00595 priA primosomal prot 86.2 3.3 7.2E-05 51.9 10.3 96 879-978 6-102 (505)
385 PRK00771 signal recognition pa 86.1 5.2 0.00011 49.0 11.6 36 576-614 96-131 (437)
386 PF05876 Terminase_GpA: Phage 85.9 1.1 2.3E-05 56.8 5.8 166 554-728 14-191 (557)
387 COG1419 FlhF Flagellar GTP-bin 85.6 14 0.00031 44.2 14.4 132 575-734 203-341 (407)
388 PF06733 DEAD_2: DEAD_2; Inte 85.2 0.42 9.2E-06 50.9 1.6 39 653-691 117-159 (174)
389 TIGR02639 ClpA ATP-dependent C 85.1 3.7 8E-05 54.0 10.4 28 575-602 203-230 (731)
390 KOG1985|consensus 85.1 5.6 0.00012 50.6 11.1 7 1001-1007 608-614 (887)
391 cd01121 Sms Sms (bacterial rad 84.9 4.1 8.8E-05 48.9 9.8 64 562-628 68-132 (372)
392 PRK05580 primosome assembly pr 84.8 4.6 9.9E-05 52.6 11.0 96 880-979 172-268 (679)
393 TIGR02688 conserved hypothetic 84.4 2.1 4.6E-05 51.4 7.0 39 560-598 194-232 (449)
394 TIGR03689 pup_AAA proteasome A 84.3 3.5 7.5E-05 51.3 9.1 26 575-600 216-241 (512)
395 PRK08939 primosomal protein Dn 84.3 5.9 0.00013 46.3 10.6 28 575-602 156-183 (306)
396 TIGR00678 holB DNA polymerase 84.2 5.6 0.00012 42.8 9.7 25 578-602 17-41 (188)
397 PRK13342 recombination factor 84.2 4.6 0.0001 49.3 10.1 22 577-598 38-59 (413)
398 PTZ00293 thymidine kinase; Pro 84.0 5.8 0.00013 43.5 9.6 35 579-616 8-42 (211)
399 PRK00080 ruvB Holliday junctio 84.0 13 0.00029 43.8 13.6 24 576-599 52-75 (328)
400 PRK09183 transposase/IS protei 84.0 3.7 8E-05 46.8 8.5 28 574-601 101-128 (259)
401 PRK08533 flagellar accessory p 83.9 9.6 0.00021 42.6 11.7 43 575-620 24-66 (230)
402 PRK12724 flagellar biosynthesi 83.9 14 0.0003 44.8 13.5 127 578-733 226-361 (432)
403 TIGR03346 chaperone_ClpB ATP-d 83.7 4.2 9.1E-05 54.4 10.1 41 561-601 178-220 (852)
404 PHA02244 ATPase-like protein 83.6 6.4 0.00014 46.8 10.3 38 570-613 114-151 (383)
405 PHA00012 I assembly protein 83.5 3.2 6.8E-05 48.0 7.5 36 579-619 5-40 (361)
406 PRK06731 flhF flagellar biosyn 83.5 12 0.00025 43.0 12.2 127 576-730 76-210 (270)
407 PRK07399 DNA polymerase III su 83.3 6.8 0.00015 45.9 10.6 43 561-603 9-54 (314)
408 KOG1984|consensus 83.2 8.9 0.00019 49.1 11.7 10 842-851 790-799 (1007)
409 PRK14948 DNA polymerase III su 83.1 11 0.00024 48.5 13.1 9 53-61 440-448 (620)
410 PRK13826 Dtr system oriT relax 82.9 7.6 0.00016 52.6 11.9 126 555-720 380-509 (1102)
411 COG0552 FtsY Signal recognitio 82.7 3.9 8.6E-05 47.4 8.0 125 579-723 143-276 (340)
412 PRK10917 ATP-dependent DNA hel 82.6 5.2 0.00011 52.2 10.2 95 880-977 292-391 (681)
413 COG5178 PRP8 U5 snRNP spliceos 82.2 1.1 2.4E-05 57.5 3.5 11 1149-1159 1997-2007(2365)
414 KOG4592|consensus 82.0 11 0.00023 46.5 11.3 34 88-122 143-176 (728)
415 PRK06305 DNA polymerase III su 81.8 5.6 0.00012 49.1 9.5 42 561-602 22-66 (451)
416 PF03354 Terminase_1: Phage Te 81.8 7 0.00015 48.8 10.6 134 559-703 1-147 (477)
417 TIGR00763 lon ATP-dependent pr 81.6 1.8E+02 0.0038 38.9 23.9 23 577-599 349-371 (775)
418 KOG0740|consensus 81.6 2.2 4.7E-05 51.4 5.6 46 577-628 188-233 (428)
419 KOG2893|consensus 81.4 21 0.00046 38.6 12.1 31 200-230 238-268 (341)
420 PF05496 RuvB_N: Holliday junc 81.4 2 4.3E-05 47.3 4.8 22 577-598 52-73 (233)
421 COG4626 Phage terminase-like p 81.3 7.7 0.00017 47.9 10.1 132 554-700 59-206 (546)
422 PRK04132 replication factor C 81.3 6.1 0.00013 52.0 10.0 51 677-728 630-681 (846)
423 PF00265 TK: Thymidine kinase; 81.2 1.6 3.6E-05 46.5 4.0 35 579-616 5-39 (176)
424 PRK05986 cob(I)alamin adenolsy 81.1 2 4.3E-05 46.3 4.6 140 575-731 22-169 (191)
425 KOG1144|consensus 81.1 52 0.0011 42.0 16.9 120 572-712 473-599 (1064)
426 COG5178 PRP8 U5 snRNP spliceos 80.9 1.3 2.7E-05 57.0 3.4 20 1074-1093 1399-1418(2365)
427 TIGR02397 dnaX_nterm DNA polym 80.9 9 0.0002 45.6 10.8 42 561-602 19-63 (355)
428 PHA03372 DNA packaging termina 80.9 4.9 0.00011 50.1 8.3 131 572-715 200-336 (668)
429 TIGR03499 FlhF flagellar biosy 80.7 6.2 0.00013 45.6 8.9 39 575-614 194-232 (282)
430 CHL00206 ycf2 Ycf2; Provisiona 80.6 5.1 0.00011 56.0 9.0 41 575-621 1630-1670(2281)
431 KOG3837|consensus 80.5 23 0.00049 41.8 12.8 18 100-117 133-151 (523)
432 CHL00176 ftsH cell division pr 80.4 11 0.00024 48.6 11.7 24 575-598 216-239 (638)
433 PRK14721 flhF flagellar biosyn 80.3 21 0.00045 43.5 13.4 130 575-731 191-326 (420)
434 KOG1029|consensus 80.2 1.9E+02 0.004 37.2 29.6 21 669-689 706-726 (1118)
435 KOG0921|consensus 80.2 10 0.00023 48.7 10.8 137 571-716 389-535 (1282)
436 COG2256 MGS1 ATPase related to 80.2 4.8 0.0001 47.7 7.5 21 577-597 50-70 (436)
437 PRK06995 flhF flagellar biosyn 80.1 16 0.00035 45.3 12.5 25 579-603 260-284 (484)
438 PRK11034 clpA ATP-dependent Cl 79.8 5.3 0.00012 52.3 8.8 27 575-601 207-233 (758)
439 PRK06620 hypothetical protein; 79.7 7.1 0.00015 43.1 8.6 102 610-717 18-123 (214)
440 TIGR01242 26Sp45 26S proteasom 79.6 7.1 0.00015 46.8 9.3 25 575-599 156-180 (364)
441 COG1435 Tdk Thymidine kinase [ 79.5 5.4 0.00012 42.8 7.1 109 579-715 8-118 (201)
442 cd03115 SRP The signal recogni 79.4 15 0.00033 38.8 10.8 25 578-602 3-27 (173)
443 PRK09752 adhesin; Provisional 79.3 1.7 3.7E-05 57.3 4.0 6 610-615 1125-1130(1250)
444 PRK09087 hypothetical protein; 79.2 8.4 0.00018 43.0 9.0 37 679-715 89-125 (226)
445 PF05127 Helicase_RecD: Helica 79.1 1.1 2.3E-05 47.8 1.8 120 581-716 3-123 (177)
446 cd01122 GP4d_helicase GP4d_hel 79.1 13 0.00027 42.6 10.8 51 574-626 29-79 (271)
447 KOG1029|consensus 79.0 2E+02 0.0044 36.9 27.8 13 964-976 922-934 (1118)
448 PRK08699 DNA polymerase III su 78.9 13 0.00028 43.9 10.9 47 557-603 2-49 (325)
449 CHL00095 clpC Clp protease ATP 78.8 5.8 0.00013 52.9 8.9 26 575-600 200-225 (821)
450 PF13481 AAA_25: AAA domain; P 78.3 11 0.00024 40.4 9.5 55 575-629 32-93 (193)
451 PRK14712 conjugal transfer nic 78.1 12 0.00025 52.6 11.4 137 555-720 834-971 (1623)
452 PRK11054 helD DNA helicase IV; 78.1 5.7 0.00012 51.5 8.3 68 555-628 195-264 (684)
453 PRK08760 replicative DNA helic 78.1 15 0.00033 45.6 11.7 64 564-629 218-281 (476)
454 PRK06904 replicative DNA helic 78.0 19 0.00041 44.8 12.4 64 563-628 209-272 (472)
455 PRK11823 DNA repair protein Ra 77.4 6.3 0.00014 48.6 8.0 63 563-628 67-130 (446)
456 COG0464 SpoVK ATPases of the A 77.4 9.5 0.00021 47.8 9.8 49 574-628 275-323 (494)
457 PRK03992 proteasome-activating 77.4 5.4 0.00012 48.4 7.4 41 575-621 165-205 (389)
458 TIGR02640 gas_vesic_GvpN gas v 77.3 5.6 0.00012 45.4 7.1 49 559-613 5-53 (262)
459 PRK14723 flhF flagellar biosyn 77.1 18 0.00038 47.2 12.0 123 578-729 188-318 (767)
460 KOG1827|consensus 76.8 0.54 1.2E-05 58.4 -1.4 81 1236-1316 207-288 (629)
461 PF05707 Zot: Zonular occluden 76.6 4.1 8.9E-05 44.2 5.5 21 579-599 4-25 (193)
462 cd00984 DnaB_C DnaB helicase C 76.5 9.5 0.0002 42.7 8.6 40 575-616 13-52 (242)
463 TIGR01628 PABP-1234 polyadenyl 76.4 31 0.00068 44.0 14.3 17 244-260 541-557 (562)
464 PRK10416 signal recognition pa 76.4 22 0.00048 41.8 11.8 32 579-613 118-149 (318)
465 COG2255 RuvB Holliday junction 76.2 3.6 7.7E-05 46.5 4.8 23 577-599 54-76 (332)
466 TIGR00643 recG ATP-dependent D 76.1 9.9 0.00021 49.2 9.7 95 880-977 266-365 (630)
467 PRK13709 conjugal transfer nic 76.1 16 0.00035 51.9 12.2 135 555-718 966-1101(1747)
468 KOG0739|consensus 75.6 8.4 0.00018 43.7 7.4 46 578-629 169-214 (439)
469 PRK12726 flagellar biosynthesi 75.6 18 0.00038 43.4 10.5 47 575-624 206-256 (407)
470 PRK14971 DNA polymerase III su 75.3 19 0.00042 46.2 11.8 41 561-601 22-65 (614)
471 PRK06067 flagellar accessory p 75.2 19 0.00042 40.2 10.6 49 578-629 28-76 (234)
472 PF01695 IstB_IS21: IstB-like 75.2 4.5 9.7E-05 43.3 5.2 49 572-627 44-92 (178)
473 TIGR01243 CDC48 AAA family ATP 75.1 5.9 0.00013 52.2 7.4 42 575-622 487-528 (733)
474 COG1474 CDC6 Cdc6-related prot 75.0 40 0.00086 40.5 13.6 50 557-606 21-73 (366)
475 TIGR00635 ruvB Holliday juncti 75.0 9.7 0.00021 44.3 8.5 23 577-599 32-54 (305)
476 PRK09376 rho transcription ter 75.0 7.6 0.00016 46.5 7.4 30 573-602 167-196 (416)
477 TIGR01243 CDC48 AAA family ATP 75.0 11 0.00024 49.7 9.9 115 558-715 183-321 (733)
478 cd00561 CobA_CobO_BtuR ATP:cor 74.9 13 0.00029 38.9 8.4 140 579-733 6-154 (159)
479 COG3973 Superfamily I DNA and 74.5 5 0.00011 49.6 5.8 65 556-625 212-279 (747)
480 PRK14950 DNA polymerase III su 74.5 11 0.00023 48.3 9.3 91 11-175 361-451 (585)
481 KOG0162|consensus 74.4 23 0.0005 44.5 11.2 119 3-179 920-1052(1106)
482 TIGR00064 ftsY signal recognit 74.4 27 0.00058 40.2 11.6 130 579-734 76-220 (272)
483 KOG0566|consensus 74.2 16 0.00035 47.4 10.2 107 2-166 974-1080(1080)
484 TIGR01241 FtsH_fam ATP-depende 74.1 7.1 0.00015 48.9 7.5 114 559-715 61-200 (495)
485 PRK05564 DNA polymerase III su 73.9 16 0.00034 42.9 9.9 116 561-715 9-131 (313)
486 KOG2543|consensus 73.3 50 0.0011 39.2 13.1 213 558-815 11-256 (438)
487 PRK13341 recombination factor 73.1 7.5 0.00016 50.7 7.4 95 573-715 50-144 (725)
488 TIGR00767 rho transcription te 73.1 12 0.00027 44.9 8.5 94 572-689 165-267 (415)
489 KOG2893|consensus 73.0 44 0.00095 36.4 11.6 111 3-191 108-222 (341)
490 PRK08840 replicative DNA helic 72.9 28 0.0006 43.2 12.0 149 563-713 205-376 (464)
491 PRK13833 conjugal transfer pro 72.7 8.8 0.00019 45.1 7.2 55 554-612 126-180 (323)
492 PRK08506 replicative DNA helic 72.7 26 0.00056 43.7 11.7 149 562-713 179-349 (472)
493 TIGR00580 mfd transcription-re 72.5 14 0.0003 49.7 9.8 93 881-975 483-579 (926)
494 PRK14873 primosome assembly pr 72.4 13 0.00028 48.1 9.2 78 881-961 171-250 (665)
495 PTZ00454 26S protease regulato 72.2 4.9 0.00011 48.8 5.1 75 572-689 176-250 (398)
496 TIGR01425 SRP54_euk signal rec 72.0 28 0.0006 42.6 11.4 136 579-734 104-242 (429)
497 TIGR00708 cobA cob(I)alamin ad 71.6 5 0.00011 42.6 4.4 135 579-733 9-156 (173)
498 KOG0644|consensus 71.4 2.4 5.2E-05 53.4 2.3 61 1263-1323 1053-1113(1113)
499 KOG1985|consensus 71.3 37 0.0008 43.7 12.2 130 7-197 3-133 (887)
500 PRK14950 DNA polymerase III su 71.1 18 0.00038 46.4 10.1 100 2-182 362-461 (585)
No 1
>KOG0386|consensus
Probab=100.00 E-value=4.3e-197 Score=1742.80 Aligned_cols=1004 Identities=61% Similarity=0.925 Sum_probs=918.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHhHHHHHHHHHhhchHHHHHHHHHHHHHhhcccccccccChhhh
Q psy1544 197 LDPLIILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACARRDTTLETAVNVKAY 276 (1331)
Q Consensus 197 ~d~~~~~~~re~~i~~~i~~r~~el~~~l~~~~~~~~~~~~~~e~~~l~l~~~q~~~r~~~~~~~~~~~~~~~~~~~~~~ 276 (1331)
||++.+...++.+|+.+|.++++++++ ++.++.++++.+|.+|+++|+|+++|++||..+++|+..++++.++.|+.+|
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~-~~~~~~~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~~~~n~~~~ 206 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQ-LARSLMGELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSETALNPKAF 206 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHH-hhhcchHHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccccccCHHHH
Confidence 999999999999999999999999999 8998899999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 277 KRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQ 356 (1331)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (1331)
+|.++++++++|+|++||+||+.+.|++++++|.+||.++++|+++|.++|+.+..+..+++++|+.||++.||++++++
T Consensus 207 ~R~~~q~~~~~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~ 286 (1157)
T KOG0386|consen 207 KRGKRQTLSEARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRI 286 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhhcccCCC
Q psy1544 357 ERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKRKQSVKQKLMDTDG 436 (1331)
Q Consensus 357 ~~~~~~r~~~l~~~d~~~y~~~~~~~k~~r~~~ll~~t~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1331)
+|++|+||++||+||+|||+||+|++||+||++||+|||+|+.+|+.+|+.||.+ . ++
T Consensus 287 ~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~yl~sL~s~Vk~qk~~-------------------~--~~- 344 (1157)
T KOG0386|consen 287 DRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDSYLPSLSSVVKGQKSE-------------------N--PD- 344 (1157)
T ss_pred HHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhHHHHHHHHHHHHhhcc-------------------c--cc-
Confidence 9999999999999999999999999999999999999999999999999988731 0 00
Q ss_pred CcccCccccccccccccchhhcccccccCCCCchhhHhhhhhhhcCCCCccccCCCcCCccccchhhhcccCCcchhhhc
Q psy1544 437 KVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEKSKEKTSGENENKEK 516 (1331)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 516 (1331)
.. .++| ++.. .. +
T Consensus 345 -------~~-~~~d--~~~i--------------------------------~~-------------------------~ 357 (1157)
T KOG0386|consen 345 -------AN-SASD--ISGI--------------------------------SG-------------------------S 357 (1157)
T ss_pred -------cc-hhhh--hhhh--------------------------------hh-------------------------h
Confidence 00 0000 0000 00 0
Q ss_pred ccCCchhhhhcchhhhhhhhcccchhhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHH
Q psy1544 517 NKGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALI 596 (1331)
Q Consensus 517 ~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li 596 (1331)
.+.+++++ .....+||+++|.+.|.+.+||++++||+|++||+.||+||+++|+|+.|||||||||||||||+|++|
T Consensus 358 ak~~~~d~---~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi 434 (1157)
T KOG0386|consen 358 AKADVDDH---AESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI 434 (1157)
T ss_pred hcchhhhh---hhcchhHHHhcchhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH
Confidence 00000001 135578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCccccc
Q psy1544 597 TYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKL 676 (1331)
Q Consensus 597 ~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~ 676 (1331)
+||++.++..||+|||||+++|.||..||.+|+|++..++|+|.+..|+.+...+..++|+|++|||+++++++..|.++
T Consensus 435 tYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI 514 (1157)
T KOG0386|consen 435 TYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKI 514 (1157)
T ss_pred HHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccc
Q psy1544 677 HWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEK 756 (1331)
Q Consensus 677 ~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~ 756 (1331)
.|.++||||+|||||..|+++..+...|.+.+|+||||||+||++.|||+||||+.|.+|++...|.+||+.||+++|++
T Consensus 515 ~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek 594 (1157)
T KOG0386|consen 515 SWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEK 594 (1157)
T ss_pred CCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchH
Q psy1544 757 VELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAK 836 (1331)
Q Consensus 757 ~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~ 836 (1331)
+++++++...+++|||+||+||++||+|++|+..||++++.+++|.||+.|+.+|.++...+....+. ..+.++++
T Consensus 595 ~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~----~~g~~g~k 670 (1157)
T KOG0386|consen 595 VELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDT----AKGKKGYK 670 (1157)
T ss_pred ccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCc----hhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999888776654 45677889
Q ss_pred HHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHH
Q psy1544 837 ALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILED 916 (1331)
Q Consensus 837 ~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~ 916 (1331)
.++|.+|+||+||||||+|..++..+....+. .++|+.+||+++|+++|+++++.||+||+||+|+.++++|++
T Consensus 671 ~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~------~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEd 744 (1157)
T KOG0386|consen 671 PLFNTIMQLRKLCNHPYLFANVENSYTLHYDI------KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILED 744 (1157)
T ss_pred hhhhHhHHHHHhcCCchhhhhhccccccccCh------hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999888777665543 689999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccC
Q psy1544 917 YFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 996 (1331)
Q Consensus 917 ~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiG 996 (1331)
||..++++|+++||+|+.++|..+++.||.|+++||+||+||+|||+|||||.||+||+||++|||+++.||.+||||||
T Consensus 745 yL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig 824 (1157)
T KOG0386|consen 745 YLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 824 (1157)
T ss_pred HHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCChhHHHHHHHHHhccCCcchhhhcCCCCHHHHHHHH
Q psy1544 997 QKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQML 1076 (1331)
Q Consensus 997 Q~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~~~e~~~~l~~il~~~~~~~~~~~~~~~~~~~n~~l 1076 (1331)
|+++|+|+|+++.++|||.|++.+..|++++++||++|+|++++++.+|+.+|+.+++.++++ +++++++++.||+++
T Consensus 825 q~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~--~~~~v~~~~~ln~~l 902 (1157)
T KOG0386|consen 825 QKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDE--EEEEVPDDEVLNSML 902 (1157)
T ss_pred chhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCcc--ccccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999976654 348899999999999
Q ss_pred HhCHHHHHHHHHHhHHHHHhhcc---cCcccccCCCchhhhcccHHHHHHHHHHHHHHHHhhcCCCcccccccccccchh
Q psy1544 1077 ARSEEEFQTYQRIDAERRKEQGK---KSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSLT 1153 (1331)
Q Consensus 1077 ~r~~~e~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~R~rk~v~y~d~lt 1153 (1331)
+|+++||+.|++||.++.+++.. ++||++++|+|+|+.+.+.++++...+++... .+|||+|+|++|+|+|.+|
T Consensus 903 arseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~~~~~~~---~~~rg~r~Rkev~y~d~~t 979 (1157)
T KOG0386|consen 903 ARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSEEEEEEK---ILGRGRRARKEVVYSDRLT 979 (1157)
T ss_pred hcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhhhhhhhc---cccccccccceeecccccc
Confidence 99999999999999999986654 67999999999999998887777665544443 5899999999999999999
Q ss_pred hHHHHhhhcCCCCCCchhhhhHHHHhhhhccccCCCCCCCCCCCccccccccccccchhhhHHHHHHHHHHHHHHHHhhc
Q psy1544 1154 EKEWLKAIDDGVEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKRKKEKEKDREKDQAKLKKTLKKIMRVVIKYT 1233 (1331)
Q Consensus 1154 e~e~l~~~e~~~d~~~~~ee~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 1233 (1331)
|.+|+++++++++++++.+. ++++++.+ ..++.+...+++ +.. .+.. ..|..|+....++.
T Consensus 980 e~q~~k~~e~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~-~~~--~~~~------~~~~~i~~~~~~~~ 1040 (1157)
T KOG0386|consen 980 EMQWLKENESVNKEDSEEEE-------RRRGRKKS---SLDTRPLSQKKR-KLR--PRSP------KQALKIASTSIKYK 1040 (1157)
T ss_pred hhhhhhhccccccccchhhh-------hccCCCcc---ccccccchhhcc-ccc--CCCh------HHHHHHHHHHHhcc
Confidence 99999999887765544332 22333332 112222222222 111 1111 67889999999999
Q ss_pred CCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Q psy1544 1234 DSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLE 1313 (1331)
Q Consensus 1234 d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~ 1313 (1331)
+++||.+++.|..+|+++.+||||++|++||++..|+++|..+.|.++.+...||.++|.||++||++||.||.||..|+
T Consensus 1041 ~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~ 1120 (1157)
T KOG0386|consen 1041 DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQ 1120 (1157)
T ss_pred cccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q psy1544 1314 SVFTKARQRVESGE 1327 (1331)
Q Consensus 1314 ~~f~~~~~~~~~~~ 1327 (1331)
.+|.....++..++
T Consensus 1121 ~~~~~~~~~~~~~~ 1134 (1157)
T KOG0386|consen 1121 SVFKSARQEISKED 1134 (1157)
T ss_pred HHHhhhHHHHhccc
Confidence 99999999887543
No 2
>KOG0385|consensus
Probab=100.00 E-value=2.6e-109 Score=964.96 Aligned_cols=511 Identities=51% Similarity=0.872 Sum_probs=458.7
Q ss_pred cccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 548 QASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 548 qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
+|..+.+|.||+||++|++||+++|.++.||||||+||||||+|+|+++.||....+..||+|||||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEecCChhHHHHHHHH-hhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 628 WAPSVNVVAYKGSPHLRKTLQAQ-MKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 628 ~~p~~~v~~~~g~~~~r~~~~~~-~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
|+|++++++|+|++..|..+... +..+.|+|+||||++++++...|.++.|.|+||||||||||.+|++++.++.+ .+
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f-~~ 317 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF-KT 317 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHh-cc
Confidence 99999999999999998776554 45569999999999999999999999999999999999999999999999887 89
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.+||||||||+|||+.|||+|||||.|.+|++.+.|..||.... .+.....+.+||.+|+||+|||+|.+
T Consensus 318 ~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~----------~~~~~e~v~~Lh~vL~pFlLRR~K~d 387 (971)
T KOG0385|consen 318 DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTN----------CEGDQELVSRLHKVLRPFLLRRIKSD 387 (971)
T ss_pred cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccc----------cccCHHHHHHHHhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998742 11122368999999999999999999
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhcc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHV 866 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 866 (1331)
|+..||++.+..++|.||..|+..|..++........+... +....++|++||||+||||||||+.++.
T Consensus 388 Ve~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~-----~~k~kL~NI~mQLRKccnHPYLF~g~eP------ 456 (971)
T KOG0385|consen 388 VEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK-----GEKTKLQNIMMQLRKCCNHPYLFDGAEP------ 456 (971)
T ss_pred HhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc-----chhhHHHHHHHHHHHhcCCccccCCCCC------
Confidence 99999999999999999999999999998877665544322 2456899999999999999999987432
Q ss_pred CCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcC
Q psy1544 867 GGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNA 946 (1331)
Q Consensus 867 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~ 946 (1331)
+..+..+..++..|||+.+|+++|+++.+.||||||||||+.++|+|++|+..+||.|+||||+|+.++|...|+.||+
T Consensus 457 -g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~ 535 (971)
T KOG0385|consen 457 -GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNA 535 (971)
T ss_pred -CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCC
Confidence 2457778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Q psy1544 947 PDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNM 1026 (1331)
Q Consensus 947 ~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l 1026 (1331)
+.+.+||||+||+|||+||||.+||+||+||++|||..+.||++|||||||+++|+|||||+.+||||+|+.++..|+.+
T Consensus 536 ~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~L 615 (971)
T KOG0385|consen 536 PPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRL 615 (971)
T ss_pred CCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCc-ccCcCChhHHHHHHHHHhccCCcc-hhhhcCCCCHHHHHHHHHhCHHHH
Q psy1544 1027 DEKVIQAGM-FDQKSTGSERHQFLQTILHQDDEE-DEEENAVPDDETVNQMLARSEEEF 1083 (1331)
Q Consensus 1027 ~~~vi~~g~-~~~~~~~~e~~~~l~~il~~~~~~-~~~~~~~~~~~~~n~~l~r~~~e~ 1083 (1331)
.+.||+.|. -...+.+....++ -.++..+.+. .+..+..-++ +|..+|.++++..
T Consensus 616 d~~VIq~g~l~~~~~~~~~k~~~-l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~kt 672 (971)
T KOG0385|consen 616 DKLVIQQGRLEEQKSNGLGKDEL-LNLLRFGADPVFESKESTISD-DIDRILERGEEKT 672 (971)
T ss_pred hhhhhccCchhhhhccccchHHH-HHHHHcCchhhhhhcccccch-hHHHHHHhhhhhc
Confidence 999999993 3344544443444 4445444332 2222222223 8999999998654
No 3
>KOG0384|consensus
Probab=100.00 E-value=1.2e-98 Score=913.66 Aligned_cols=522 Identities=46% Similarity=0.781 Sum_probs=462.8
Q ss_pred cchhhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH
Q psy1544 539 HTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL 618 (1331)
Q Consensus 539 ~~~~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll 618 (1331)
..-...+..||..+.+.+||+||++||+||+..+.++.+||||||||||||+|+|+++.+|+......||+|||||.|++
T Consensus 353 rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~ 432 (1373)
T KOG0384|consen 353 RPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI 432 (1373)
T ss_pred chhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhh--cc-----CccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC
Q psy1544 619 SNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMK--AS-----KFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 619 ~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~--~~-----~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn 691 (1331)
.+|..||..|+ ..++++|+|+...|..++.... .. +|+++||||+++.++...|..+.|.+++||||||+||
T Consensus 433 ~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 433 TAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKN 511 (1373)
T ss_pred HHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCc
Confidence 99999999999 9999999999999888776432 22 6999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 692 HHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 692 ~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
..|+++..|..+ +..+|||+||||+||++.|||+||+||.|+.|.+...|...|.. +...-++.|
T Consensus 512 ~~~~l~~~l~~f-~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~--------------~~e~~~~~L 576 (1373)
T KOG0384|consen 512 DESKLYESLNQF-KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE--------------ETEEQVRKL 576 (1373)
T ss_pred hHHHHHHHHHHh-cccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc--------------hhHHHHHHH
Confidence 999999998776 89999999999999999999999999999999999999876622 223347899
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
|..|+||||||++++|++.||++.+.++.|+||..|+.+|++|+.++......+. .++...++|++|.|++||||
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~-----~g~~~~lLNimmELkKccNH 651 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA-----KGSTPSLLNIMMELKKCCNH 651 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC-----CCCCchHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999998876654322 23347899999999999999
Q ss_pred ccchhhhHhhhhhccCCCC-cccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcC
Q psy1544 852 PFMFQNIEEKFSDHVGGSG-IVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDG 930 (1331)
Q Consensus 852 p~l~~~~~~~~~~~~~~~~-~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG 930 (1331)
|||+...++.+........ -..-..++..|||+-+|+++|.+|++.||||||||||+.++|+|++||..+||+|-||||
T Consensus 652 pyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDG 731 (1373)
T KOG0384|consen 652 PYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDG 731 (1373)
T ss_pred ccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccC
Confidence 9999988877654433200 011234678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 931 TTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 931 ~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
++..+-|+.+|+.||+++++-||||+||+|||+||||.+||||||||++|||..++||+.|||||||++.|.||||||.|
T Consensus 732 svrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 732 SVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred CcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcccCcCCh--hHHHHHHHHHhccCCcc----hhhhcCCCCHHHHHHHHHhCHH
Q psy1544 1011 SVEERILAAARYKLNMDEKVIQAGMFDQKSTG--SERHQFLQTILHQDDEE----DEEENAVPDDETVNQMLARSEE 1081 (1331)
Q Consensus 1011 TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~~--~e~~~~l~~il~~~~~~----~~~~~~~~~~~~~n~~l~r~~~ 1081 (1331)
|||+.|++++..|+-|+.+||+.+......+. .-..+.|.+||..+..+ .+.+...+....|.+||.|.+.
T Consensus 812 TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 812 TVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred chHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 99999999999999999999998876333221 12245578888765532 2233345556788999988765
No 4
>KOG0391|consensus
Probab=100.00 E-value=4.6e-94 Score=854.08 Aligned_cols=523 Identities=42% Similarity=0.747 Sum_probs=444.9
Q ss_pred hcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHH
Q psy1544 547 EQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFE 626 (1331)
Q Consensus 547 ~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 626 (1331)
.-.+.++.|.||+||..|+.||+.+|+++.|||||||||||||||+|+|+++|.+..++.||+|||||++++-||..||+
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEecCChhHHHHHHH-HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc
Q psy1544 627 RWAPSVNVVAYKGSPHLRKTLQA-QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV 705 (1331)
Q Consensus 627 k~~p~~~v~~~~g~~~~r~~~~~-~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~ 705 (1331)
+|||+++++.|+|+...|+..+. |.+...|+|+||+|..+..+...|...+|.|+||||||+|||..++.|++|..+ +
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnf-n 764 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNF-N 764 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhcc-c
Confidence 99999999999999988876544 556778999999999999999999999999999999999999999999999876 8
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
+.+||||||||+||++.|||+|++||.|.+|.+...|..||..|..... +.+.+.....+.|||++|+||+|||+|.
T Consensus 765 sqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmi---Egsqeyn~klV~RLHkVlrPfiLRRlK~ 841 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMI---EGSQEYNHKLVIRLHKVLRPFILRRLKR 841 (1958)
T ss_pred hhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhc---ccchhhchHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875432 2334445677899999999999999999
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh-------
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI------- 858 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~------- 858 (1331)
+|+++||.|.+++|+|.||..|+.+|+.+....- .+.....++...++|++|+||+|||||-||+.-
T Consensus 842 dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~------TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV 915 (1958)
T KOG0391|consen 842 DVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG------TKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFV 915 (1958)
T ss_pred HHHHhcchhhhhheeeehhhhHHHHHHHHhhccc------hhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 9999999999999999999999999998765422 122334677889999999999999999776100
Q ss_pred ------------H----h----------------------------------------hhh-------------------
Q psy1544 859 ------------E----E----------------------------------------KFS------------------- 863 (1331)
Q Consensus 859 ------------~----~----------------------------------------~~~------------------- 863 (1331)
. + .+.
T Consensus 916 ~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~a 995 (1958)
T KOG0391|consen 916 AEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSA 995 (1958)
T ss_pred cCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccccch
Confidence 0 0 000
Q ss_pred ----------------------------------------hccC------------------------------------
Q psy1544 864 ----------------------------------------DHVG------------------------------------ 867 (1331)
Q Consensus 864 ----------------------------------------~~~~------------------------------------ 867 (1331)
+..+
T Consensus 996 a~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~ 1075 (1958)
T KOG0391|consen 996 ASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPG 1075 (1958)
T ss_pred hcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCC
Confidence 0000
Q ss_pred -----------CCCcccCC----------------------------------------------------------c--
Q psy1544 868 -----------GSGIVSGP----------------------------------------------------------D-- 876 (1331)
Q Consensus 868 -----------~~~~~~~~----------------------------------------------------------~-- 876 (1331)
.......+ .
T Consensus 1076 p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l 1155 (1958)
T KOG0391|consen 1076 PVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELL 1155 (1958)
T ss_pred CcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhh
Confidence 00000000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy1544 877 -------------------------------------------------------------------------------- 876 (1331)
Q Consensus 877 -------------------------------------------------------------------------------- 876 (1331)
T Consensus 1156 ~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~ 1235 (1958)
T KOG0391|consen 1156 RICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPY 1235 (1958)
T ss_pred hhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccc
Confidence
Q ss_pred -------------------cccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Q psy1544 877 -------------------LYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDR 937 (1331)
Q Consensus 877 -------------------l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR 937 (1331)
+.-.+||++.|.-+|..++..|||||||+||+.++|+|+.||.++|+-|+||||.++.++|
T Consensus 1236 ~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqR 1315 (1958)
T KOG0391|consen 1236 FQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQR 1315 (1958)
T ss_pred cchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHH
Confidence 0002899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHH
Q psy1544 938 GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERIL 1017 (1331)
Q Consensus 938 ~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~ 1017 (1331)
+.++++||+ |..+||||+||+.||.||||++||||||||++|||.++.||.+|+|||||+++|+|||||..+|||++|+
T Consensus 1316 QaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniL 1394 (1958)
T KOG0391|consen 1316 QALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENIL 1394 (1958)
T ss_pred HHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHH
Confidence 999999996 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCcCChhHHHHHHHHHhccCCcch-------hhhcCCC-CHHHHHHHHHhCHHHH
Q psy1544 1018 AAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEED-------EEENAVP-DDETVNQMLARSEEEF 1083 (1331)
Q Consensus 1018 ~~~~~K~~l~~~vi~~g~~~~~~~~~e~~~~l~~il~~~~~~~-------~~~~~~~-~~~~~n~~l~r~~~e~ 1083 (1331)
.++..|..+.+.+|++|.|...... .....++++....++ .++..+. +...+...|++.++|-
T Consensus 1395 kkanqKr~L~evaiqggdfTt~ff~---q~ti~dLFd~~~p~s~~~~~~~ad~~v~~see~~le~alA~aede~ 1465 (1958)
T KOG0391|consen 1395 KKANQKRMLDEVAIQGGDFTTAFFK---QRTIRDLFDVYLPESDVGVPAKADEFVVASEEPSLEVALAPAEDEE 1465 (1958)
T ss_pred hhhhHHHHHHHHhhccCCccHHHHh---hhhHHHHhcCCCccccCCCCccchhhhhhcCcchHHHHhhhhcchH
Confidence 9999999999999999998654332 223345555432111 1222222 2233777777766653
No 5
>KOG0388|consensus
Probab=100.00 E-value=1.7e-93 Score=818.95 Aligned_cols=624 Identities=39% Similarity=0.691 Sum_probs=485.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 332 ARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHKME 411 (1331)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~d~~~y~~~~~~~k~~r~~~ll~~t~~~~~~l~~~v~~~~~~ 411 (1331)
.+++|+-|.+..|+++.||+.+-...++|||-|.+.|.+-||.--+ ...++|.+||.||+-|-+-|+.+..-.--
T Consensus 403 ~rakr~~Rem~~fwKk~er~~rd~rKK~EkEamer~KrEeEerEsk----RQarklnfLltQTELySHFi~rK~d~n~s- 477 (1185)
T KOG0388|consen 403 IRAKRIYREMYGFWKKNERNMRDLRKKAEKEAMERAKREEEERESK----RQARKLNFLLTQTELYSHFIGRKNDCNLS- 477 (1185)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHhhcccCCcc-
Confidence 4567888999999999999998888899999999999888876544 23478999999999999999866531100
Q ss_pred HHHhhhHHHHHhhhhhhhhcccCCCCcccCccccccccccccchhhcccccccCCCCchhhHhhh-hhhhcCCCCccccC
Q psy1544 412 QKKKQDEESKKRKQSVKQKLMDTDGKVTLDQDETSQLTDMHISVREISSGKVLKGEDAPLAAHLK-QWIQDHPGWEVVAD 490 (1331)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 490 (1331)
++++. ++.+ .+-++.- +-+.+.++.+. .-+.+... .+.
T Consensus 478 --------------------------e~lp~------~~ne-----~sa~e~n-~~~d~eea~l~~~~lraAq~--Av~- 516 (1185)
T KOG0388|consen 478 --------------------------EALPA------ERNE-----ISAGEPN-GMKDYEEAMLQKLRLRAAQD--AVS- 516 (1185)
T ss_pred --------------------------ccCCc------cccc-----ccccCcc-cCCChHHHHHHHHHHHHHHH--HHh-
Confidence 00000 0000 0000000 00000000000 00000000 000
Q ss_pred CCcCCccccchhhhcccCCcchhhhcccCCchhhhhcchhhhhhhhcccchh-hhhhhcccccccCCccHHHHHHHHHHH
Q psy1544 491 SDEENEDEDSEKSKEKTSGENENKEKNKGEDDEYNKNAMEEATYYSIAHTVH-EIVTEQASILVNGKLKEYQIKGLEWMV 569 (1331)
Q Consensus 491 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-e~~~~qp~~l~~~~LrpyQ~~gv~~l~ 569 (1331)
.-........+-....+..+..+. +..-.|.....+. .....||.+ +.++|++||++|++|++
T Consensus 517 ------a~~~t~afd~e~~~~~ntse~e~~---------e~e~n~q~~t~i~~t~tV~qPki-l~ctLKEYQlkGLnWLv 580 (1185)
T KOG0388|consen 517 ------AKQITDAFDTEFGAERNTSEFEGP---------ENEGNFQGPTNIDTTRTVPQPKI-LKCTLKEYQLKGLNWLV 580 (1185)
T ss_pred ------HHHhhhhhhhhhhhccccccccCc---------cccccccCCccccceeeccCchh-hhhhhHHHhhccHHHHH
Confidence 000000000000000000000000 0011111222222 223456665 57899999999999999
Q ss_pred HHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHH
Q psy1544 570 SLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQA 649 (1331)
Q Consensus 570 ~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~ 649 (1331)
.+|.+|.||||||+||||||+|+|+++++|.+...+.||+|||+|.|+|.||..||.+|+|.++++.|.|+...|+.++.
T Consensus 581 nlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrK 660 (1185)
T KOG0388|consen 581 NLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRK 660 (1185)
T ss_pred HHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred Hh-------hccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChH
Q psy1544 650 QM-------KASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLP 722 (1331)
Q Consensus 650 ~~-------~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~ 722 (1331)
.+ ....|+|+||||+.+..+...|.+++|.|+|+|||+-||...|.+++.|..+ +|+.||||||||+||+..
T Consensus 661 fw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF-~cRNRLLLTGTPIQNsMq 739 (1185)
T KOG0388|consen 661 FWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSF-KCRNRLLLTGTPIQNSMQ 739 (1185)
T ss_pred hcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhh-hccceeeecCCccchHHH
Confidence 43 4678999999999999999999999999999999999999999999999876 899999999999999999
Q ss_pred HHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcC
Q psy1544 723 ELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCD 802 (1331)
Q Consensus 723 EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ 802 (1331)
|||+||+|+.|.+|.+..+|.+||.+.+......... -....++|||.+|+||||||.|++|..+|..+.+..|+|+
T Consensus 740 ELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~t---lneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~Cd 816 (1185)
T KOG0388|consen 740 ELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTT---LNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCD 816 (1185)
T ss_pred HHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCC---cCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEec
Confidence 9999999999999999999999999987665432211 1223589999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhh---------------------
Q psy1544 803 MSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEK--------------------- 861 (1331)
Q Consensus 803 ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~--------------------- 861 (1331)
||..|+.+|..+..... ...+.+++||||++||||.||...+..
T Consensus 817 Ls~RQ~~lYq~ik~~iS---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnp 881 (1185)
T KOG0388|consen 817 LSYRQKVLYQEIKRSIS---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNP 881 (1185)
T ss_pred hhHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCc
Confidence 99999999998765422 233456999999999999887321100
Q ss_pred ------------------------------hhhccCCCCc----------------------------------------
Q psy1544 862 ------------------------------FSDHVGGSGI---------------------------------------- 871 (1331)
Q Consensus 862 ------------------------------~~~~~~~~~~---------------------------------------- 871 (1331)
+...+.+.+.
T Consensus 882 i~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~ 961 (1185)
T KOG0388|consen 882 IDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLL 961 (1185)
T ss_pred eeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchh
Confidence 0000000000
Q ss_pred --------------------------------------------------------ccCCccccccchhHHHHHhhhhhh
Q psy1544 872 --------------------------------------------------------VSGPDLYRVSGKFELLDRILPKLK 895 (1331)
Q Consensus 872 --------------------------------------------------------~~~~~l~~~s~K~~~L~~lL~~l~ 895 (1331)
.....++..|||+..|+.+|.+++
T Consensus 962 e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLk 1041 (1185)
T KOG0388|consen 962 ESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLK 1041 (1185)
T ss_pred HHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhh
Confidence 000012346999999999999999
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII 975 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~ 975 (1331)
+.|||||+|+||+.++++|++||..+|+.|+++||+.+..+|..++.+|+. +++||||+||+|||+||||++||+|||
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViF 1119 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIF 1119 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEecccCcccccccccceEEE
Confidence 999999999999999999999999999999999999999999999999995 789999999999999999999999999
Q ss_pred eCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCcccC
Q psy1544 976 FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQ 1038 (1331)
Q Consensus 976 ~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~ 1038 (1331)
||++|||..+.||++||||+||+++|.||||++.|||||+|+.++..|..+.+.|+.+|.|..
T Consensus 1120 YdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1120 YDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred ecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999988754
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.7e-88 Score=862.16 Aligned_cols=511 Identities=48% Similarity=0.833 Sum_probs=447.4
Q ss_pred hhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 546 TEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 546 ~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
..+|..+. ++|+|||++||+||+.++.++.||||||+||||||+|+|+++.++....+..+|+|||||.+++.||.+||
T Consensus 160 ~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei 238 (1033)
T PLN03142 160 LVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEI 238 (1033)
T ss_pred ccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHH
Confidence 45676655 89999999999999999999999999999999999999999999988778889999999999999999999
Q ss_pred HHHcCCCcEEEecCChhHHHHHHH-HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc
Q psy1544 626 ERWAPSVNVVAYKGSPHLRKTLQA-QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY 704 (1331)
Q Consensus 626 ~k~~p~~~v~~~~g~~~~r~~~~~-~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~ 704 (1331)
.+|+|.+.+++|+|+...+..... ......++|+||||+++.++...|..+.|++|||||||++||..+++++++..+
T Consensus 239 ~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L- 317 (1033)
T PLN03142 239 RRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF- 317 (1033)
T ss_pred HHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHh-
Confidence 999999999999999887765433 234567999999999999999999999999999999999999999999999877
Q ss_pred cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 705 VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 784 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k 784 (1331)
++.+||+|||||++|++.|||++|+||.|+.|++...|..||..... ......+.+||.+|+||++||++
T Consensus 318 ~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~----------~~~~e~i~~L~~~L~pf~LRR~K 387 (1033)
T PLN03142 318 STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE----------NDQQEVVQQLHKVLRPFLLRRLK 387 (1033)
T ss_pred hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc----------cchHHHHHHHHHHhhHHHhhhhH
Confidence 78999999999999999999999999999999999999999986321 12234578999999999999999
Q ss_pred HHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544 785 KEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD 864 (1331)
Q Consensus 785 ~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 864 (1331)
.+|...||++.+.+++|.||+.|+.+|+.+.......... ......+++.+++||+||+||+++...+.
T Consensus 388 sdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~-------g~~~~~LlnilmqLRk~cnHP~L~~~~ep---- 456 (1033)
T PLN03142 388 SDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA-------GGERKRLLNIAMQLRKCCNHPYLFQGAEP---- 456 (1033)
T ss_pred HHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhCCHHhhhcccc----
Confidence 9999999999999999999999999999988765543322 12345688999999999999999865432
Q ss_pred ccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHh
Q psy1544 865 HVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 865 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~F 944 (1331)
+........++..|+|+.+|+.+|..+...|+||||||||+.++++|+++|..+|+.|++|||+++..+|..+|+.|
T Consensus 457 ---~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~F 533 (1033)
T PLN03142 457 ---GPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAF 533 (1033)
T ss_pred ---cCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHh
Confidence 11233445677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKL 1024 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~ 1024 (1331)
|++++..+|||+||+|||+||||+.||+||+||++|||..+.||+||+|||||+++|+||+|++.|||||+|++++..|+
T Consensus 534 n~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 534 NKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred ccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCcCChhHHHHHHHHHhccCCcc-hhhhcCCCCHHHHHHHHHhCHHHHH
Q psy1544 1025 NMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEE-DEEENAVPDDETVNQMLARSEEEFQ 1084 (1331)
Q Consensus 1025 ~l~~~vi~~g~~~~~~~~~e~~~~l~~il~~~~~~-~~~~~~~~~~~~~n~~l~r~~~e~~ 1084 (1331)
.++..||+.|.+..... . ..+.|..++....+. -...+...++++|+.||+|+++...
T Consensus 614 ~Ld~~Vi~~g~~~~~~~-~-~~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~ 672 (1033)
T PLN03142 614 ALDALVIQQGRLAEQKT-V-NKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATA 672 (1033)
T ss_pred HHHHHHHhcCccccccc-C-CHHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHH
Confidence 99999999987754321 1 123355555543322 1222345789999999999998764
No 7
>KOG0389|consensus
Probab=100.00 E-value=2.7e-89 Score=801.19 Aligned_cols=489 Identities=43% Similarity=0.698 Sum_probs=418.7
Q ss_pred hhhhhcccccc-cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 543 EIVTEQASILV-NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 543 e~~~~qp~~l~-~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
..+.+||..+- +.+|++||+.||+|+.-+|.++.+||||||||||||+|+|+|+++|.+.+. .||+|||||.|++.||
T Consensus 385 ~~~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~-~gpHLVVvPsSTleNW 463 (941)
T KOG0389|consen 385 KFITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGN-PGPHLVVVPSSTLENW 463 (941)
T ss_pred cccccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCC-CCCcEEEecchhHHHH
Confidence 45677888775 558999999999999999999999999999999999999999999988866 8999999999999999
Q ss_pred HHHHHHHcCCCcEEEecCChhHHHHHHHHhhcc--CccEEEeeHHHHHh---ccCcccccCccEEEEeCCcccCCcchHH
Q psy1544 622 SLEFERWAPSVNVVAYKGSPHLRKTLQAQMKAS--KFNVLLTTYEYVIK---DKGPLAKLHWKYMIIDEGHRMKNHHCKL 696 (1331)
Q Consensus 622 ~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~--~~~VvItTye~l~~---~~~~l~~~~~~~vIiDEaHrikn~~sk~ 696 (1331)
.+||.+|||.++|..|+|+...|+.++..+... .|+|++|||..+.. ++.+|...+|++||+||||.+||..|.+
T Consensus 464 lrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 464 LREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 999999999999999999999999988877655 89999999998864 5678889999999999999999999999
Q ss_pred HHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCCh-hHHHHHhhccccccccccccCHHHHHHHHHHHHHHH
Q psy1544 697 THILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSV-STFEQWFNAPFATTGEKVELNEEETILIIRRLHKVL 775 (1331)
Q Consensus 697 ~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~-~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L 775 (1331)
++.|-.+ .+.+||||||||+|||+.|||+||.|+.|.+|.+. ..+...|...-...++.. ..--....+.|-..++
T Consensus 544 y~~LM~I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e--~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 544 YKHLMSI-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE--NALLSQERISRAKTIM 620 (941)
T ss_pred HHHhccc-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh--HHHHHHHHHHHHHHhh
Confidence 9999887 79999999999999999999999999999999754 456666655322111100 0111123577888999
Q ss_pred HHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccch
Q psy1544 776 RPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMF 855 (1331)
Q Consensus 776 ~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 855 (1331)
.||+|||.|.+|.++||+|..++.+|.|+..|+.+|..+................. . . -+.+|+||+++|||.||
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~---~-~-~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSEL---K-S-GNVLMQLRKAANHPLLF 695 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccc---c-c-chHHHHHHHHhcChhHH
Confidence 99999999999999999999999999999999999999877652211111111001 1 1 56899999999999998
Q ss_pred hhhHh-----h---------------------------------hhhccC-CCCcccCCccccccchhHHHHHhhhhhhc
Q psy1544 856 QNIEE-----K---------------------------------FSDHVG-GSGIVSGPDLYRVSGKFELLDRILPKLKS 896 (1331)
Q Consensus 856 ~~~~~-----~---------------------------------~~~~~~-~~~~~~~~~l~~~s~K~~~L~~lL~~l~~ 896 (1331)
+..-. . ++..+. ...+.-..+.|-.|||+..|..+|++++.
T Consensus 696 R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~ 775 (941)
T KOG0389|consen 696 RSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK 775 (941)
T ss_pred HHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh
Confidence 54310 0 011111 22333445678889999999999999999
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEe
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIF 976 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~ 976 (1331)
.|+|||||||||.++|+|+.+|..+|+.|+|+||+|....|+.+|+.||. +.+++|||+||+|||.||||++||+||++
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIih 854 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIH 854 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEe
Confidence 99999999999999999999999999999999999999999999999995 67899999999999999999999999999
Q ss_pred CCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCC
Q psy1544 977 DSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKST 1041 (1331)
Q Consensus 977 D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~ 1041 (1331)
|.++||..+.||.+||||+||+|+|+||+||+.+||||.|+.++..|+.+...+-+.|.......
T Consensus 855 D~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~~~e~ 919 (941)
T KOG0389|consen 855 DIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGVEDEG 919 (941)
T ss_pred ecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999988776554433
No 8
>KOG0387|consensus
Probab=100.00 E-value=2.7e-87 Score=785.85 Aligned_cols=476 Identities=36% Similarity=0.652 Sum_probs=414.1
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSV 632 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~ 632 (1331)
+...|++||.+||+||++++.++.||||+|+||||||||+|+|++.|...+.-.+|+|||||.+++.||..||.+|+|.+
T Consensus 202 I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~ 281 (923)
T KOG0387|consen 202 IWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPF 281 (923)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcce
Confidence 45689999999999999999999999999999999999999999999998777799999999999999999999999999
Q ss_pred cEEEecCChhH-----------HHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHH
Q psy1544 633 NVVAYKGSPHL-----------RKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILN 701 (1331)
Q Consensus 633 ~v~~~~g~~~~-----------r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~ 701 (1331)
+|.+|+|+... +..+.........+|+||||+.+......+..+.|++||+||+|+|+|++++++.++.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islack 361 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACK 361 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHH
Confidence 99999998652 1111112234556899999999999999999999999999999999999999999999
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCH--HHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNE--EETILIIRRLHKVLRPFL 779 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~--~~~~~~~~rL~~~L~p~~ 779 (1331)
.+ ++.+|++|||||+||++.|||+|++|+.|+.+++...|.+.|..|+..++.....+. .......-.|+.++.||+
T Consensus 362 ki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~Pyl 440 (923)
T KOG0387|consen 362 KI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYL 440 (923)
T ss_pred hc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 87 899999999999999999999999999999999999999999999988776544333 234456667999999999
Q ss_pred HHHHHHHHhh-hCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 780 LRRLKKEVES-QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 780 lRR~k~~v~~-~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
|||+|.+|.. .||.|.+.|+.|.||+.|+.+|..+........- ..+....+..+.-||++||||.++...
T Consensus 441 LRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i--------~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 441 LRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI--------LNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH--------HcCCccceechHHHHhhcCCcccccCc
Confidence 9999999999 9999999999999999999999998765432210 011122344567789999999988653
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHH-hcCCeEEEEcCCCCHHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFS-YRGFKYMRLDGTTKAEDR 937 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~-~~g~~~~~idG~~~~~eR 937 (1331)
.+.. ... ......+..|||+.+|..+|..+...|+|||+|+|...++++|+.+|. ..||.|+++||.|+...|
T Consensus 513 ~~~~---~~~---~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 513 DEDE---KQG---PDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred cccc---ccC---CCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 2110 000 111145788999999999999999999999999999999999999999 689999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHH
Q psy1544 938 GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERIL 1017 (1331)
Q Consensus 938 ~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~ 1017 (1331)
..+|++||+ +..++|||++|+|||+||||++||.||+|||+|||..+.||..||+||||+++|.||||++.|||||+||
T Consensus 587 ~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY 665 (923)
T KOG0387|consen 587 QKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY 665 (923)
T ss_pred hHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH
Confidence 999999996 5578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccCcCChhH
Q psy1544 1018 AAARYKLNMDEKVIQAGMFDQKSTGSE 1044 (1331)
Q Consensus 1018 ~~~~~K~~l~~~vi~~g~~~~~~~~~e 1044 (1331)
.++..|..|.+.++..-+-.+-+...+
T Consensus 666 ~rQI~Kq~Ltn~il~~p~q~RfF~~~d 692 (923)
T KOG0387|consen 666 HRQIFKQFLTNRILKNPEQRRFFKGND 692 (923)
T ss_pred HHHHHHHHHHHHHhcCHHHhhhccccc
Confidence 999999999999997655444444444
No 9
>KOG0392|consensus
Probab=100.00 E-value=1.2e-81 Score=759.92 Aligned_cols=488 Identities=36% Similarity=0.651 Sum_probs=419.9
Q ss_pred ccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC------CCCcEEEEeCCccHHHHHHH
Q psy1544 551 ILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK------VNGPFLIIVPLSTLSNWSLE 624 (1331)
Q Consensus 551 ~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~------~~~p~LIV~P~sll~qW~~E 624 (1331)
+-++.+||.||++||+|+..+..-+.+|||||+||||||+|+|.+++.=..... ...|.|||||.++...|+.|
T Consensus 970 ~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E 1049 (1549)
T KOG0392|consen 970 VPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSE 1049 (1549)
T ss_pred cchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHH
Confidence 345689999999999999999999999999999999999999999986544431 23479999999999999999
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY 704 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~ 704 (1331)
+.+|+|-++|..|.|.+..|..++... .+.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++++.+
T Consensus 1050 ~~kf~pfL~v~~yvg~p~~r~~lR~q~--~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL- 1126 (1549)
T KOG0392|consen 1050 VKKFFPFLKVLQYVGPPAERRELRDQY--KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQL- 1126 (1549)
T ss_pred HHHhcchhhhhhhcCChHHHHHHHhhc--cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHH-
Confidence 999999999999999999998877654 46799999999999999999999999999999999999999999999998
Q ss_pred cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhcccccccccc--ccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 705 VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKV--ELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~--~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
++.|||+|||||+|||..|||+|++||+|+.+|+.+.|...|.+|+....... ....+.+..++..||+.+-||++||
T Consensus 1127 ~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1127 RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998765433 2344567788999999999999999
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcc--hHHHHHHHHHHHHhcCCccchhhh--
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGG--AKALMNTIVQLRKLCNHPFMFQNI-- 858 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~Lrk~~~hp~l~~~~-- 858 (1331)
+|.+|.++||+|....++|+|++.|+++|+.+.............+.....+ ...++..+.-||+.||||.+...-
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 9999999999999999999999999999999988733322222222221222 567889999999999999886431
Q ss_pred --HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhc--------------CCCeeEEEeccHHHHHHHHHHHHhc-
Q psy1544 859 --EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKS--------------TGHRVLLFCQMTQLMNILEDYFSYR- 921 (1331)
Q Consensus 859 --~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~--------------~g~KVLIFsq~~~~ld~L~~~L~~~- 921 (1331)
...+.+.... ..+.-.-+..++|+.+|..+|..+-- .+||+|||||++.++|+++.-|-..
T Consensus 1287 p~la~i~~~l~~--~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~ 1364 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAH--FNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKY 1364 (1549)
T ss_pred chHHHHHHHHHH--hhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhh
Confidence 1111111110 11111225789999999999998741 5799999999999999999987654
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCC
Q psy1544 922 --GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKN 999 (1331)
Q Consensus 922 --g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k 999 (1331)
.+.|.|+||++.+.+|.+++++||+ +..+.|+|++|.+||.||||++||||||++-+|||.++.||++|||||||++
T Consensus 1365 mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1365 MPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 6779999999999999999999995 6789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCChhH
Q psy1544 1000 EVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSE 1044 (1331)
Q Consensus 1000 ~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~~~e 1044 (1331)
.|.|||||++||+||+|+..+..|+++++.||+....+..+.+..
T Consensus 1444 vVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~Td 1488 (1549)
T KOG0392|consen 1444 VVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTD 1488 (1549)
T ss_pred eeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHH
Confidence 999999999999999999999999999999998766555544443
No 10
>KOG1015|consensus
Probab=100.00 E-value=4.7e-71 Score=648.90 Aligned_cols=528 Identities=29% Similarity=0.466 Sum_probs=425.2
Q ss_pred CCccHHHHHHHHHHHHHh---------cCCCceEEecCCCCCHHHHHHHHHHHHHHh-cCCCCcEEEEeCCccHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLF---------NNNLNGILADEMGLGKTIQTIALITYLMEK-KKVNGPFLIIVPLSTLSNWSLE 624 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~---------~~~~~gILADemGlGKTi~ai~li~~l~~~-~~~~~p~LIV~P~sll~qW~~E 624 (1331)
.+|+|||..||+||+... ..|.|||||+.||||||+|+|+|++.++.. .....++|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 489999999999998753 357789999999999999999999876654 3445679999999999999999
Q ss_pred HHHHcCCCc------EEEecCC--hhHH-HHHHHHhhccCccEEEeeHHHHHhcc---------------CcccccCccE
Q psy1544 625 FERWAPSVN------VVAYKGS--PHLR-KTLQAQMKASKFNVLLTTYEYVIKDK---------------GPLAKLHWKY 680 (1331)
Q Consensus 625 ~~k~~p~~~------v~~~~g~--~~~r-~~~~~~~~~~~~~VvItTye~l~~~~---------------~~l~~~~~~~ 680 (1331)
|.+|.+++. |.-+... ...| ..+..| .....|+|..|++++... ..|..-..|+
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W--~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~ 824 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW--QEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF 824 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHH--HhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCe
Confidence 999998632 2222221 1222 223333 334489999999987421 1233347899
Q ss_pred EEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccC
Q psy1544 681 MIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELN 760 (1331)
Q Consensus 681 vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~ 760 (1331)
||+||||-+||..+.+++++..+ ++++||+|||||+|||+.|+|+|++|+.|+++++..+|.+.|..|+.++. ..+.+
T Consensus 825 vVCDE~HiLKNeksa~Skam~~i-rtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq-~~dST 902 (1567)
T KOG1015|consen 825 VVCDEGHILKNEKSAVSKAMNSI-RTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQ-CADST 902 (1567)
T ss_pred EEecchhhhccchHHHHHHHHHH-HhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCc-cCCCc
Confidence 99999999999999999999988 89999999999999999999999999999999999999999999996644 44555
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHH
Q psy1544 761 EEETILIIRR---LHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKA 837 (1331)
Q Consensus 761 ~~~~~~~~~r---L~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~ 837 (1331)
..+...+-+| |+.+|..|+-|+....+...|||+.++||.+.||+.|..||..++..... ..+.. ..+.+....
T Consensus 903 ~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~-~G~d~--eg~~g~~ar 979 (1567)
T KOG1015|consen 903 MVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTG-VGNDS--EGGRGAGAR 979 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccc-cCCcc--ccccchhhh
Confidence 5555555544 78899999999999999999999999999999999999999999883321 11111 122334567
Q ss_pred HHHHHHHHHHhcCCccchhhhHh--------------hhh-hcc----------------------------CC------
Q psy1544 838 LMNTIVQLRKLCNHPFMFQNIEE--------------KFS-DHV----------------------------GG------ 868 (1331)
Q Consensus 838 l~~~l~~Lrk~~~hp~l~~~~~~--------------~~~-~~~----------------------------~~------ 868 (1331)
++..+.-|++|++||++...... .|. +.. .+
T Consensus 980 lf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~ 1059 (1567)
T KOG1015|consen 980 LFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGD 1059 (1567)
T ss_pred HHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCc
Confidence 88999999999999987521100 000 000 00
Q ss_pred ---------------CC---------------------ccc-----------------CCccccccchhHHHHHhhhhhh
Q psy1544 869 ---------------SG---------------------IVS-----------------GPDLYRVSGKFELLDRILPKLK 895 (1331)
Q Consensus 869 ---------------~~---------------------~~~-----------------~~~l~~~s~K~~~L~~lL~~l~ 895 (1331)
.+ ... .......|+|+-+|.+||..+.
T Consensus 1060 ~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mce 1139 (1567)
T KOG1015|consen 1060 VEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCE 1139 (1567)
T ss_pred hhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHH
Confidence 00 000 0011345999999999999999
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHh----------------------cCCeEEEEcCCCCHHHHHHHHHHhcCCCC-Cce
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSY----------------------RGFKYMRLDGTTKAEDRGDLLKKFNAPDS-EYF 952 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~----------------------~g~~~~~idG~~~~~eR~~~i~~Fn~~~~-~~~ 952 (1331)
+-|+|+|||||+..++++|+.||.. .|..|.+|||++...+|..+...||++.. ..+
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 9999999999999999999999973 36789999999999999999999997643 467
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy1544 953 IFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ 1032 (1331)
Q Consensus 953 v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~ 1032 (1331)
+|||||+||++||||-+||+|||||..|||..+.|+|-|+||+||+++|+||||++.||+|++||.++..|..++..||+
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVD 1299 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVD 1299 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCcCChhHHHHHHHHHhccCC----cchh-hhcCCCCHHHHHHHHHhCHHHHHHHHHHhHHH
Q psy1544 1033 AGMFDQKSTGSERHQFLQTILHQDD----EEDE-EENAVPDDETVNQMLARSEEEFQTYQRIDAER 1093 (1331)
Q Consensus 1033 ~g~~~~~~~~~e~~~~l~~il~~~~----~~~~-~~~~~~~~~~~n~~l~r~~~e~~~~~~~d~~~ 1093 (1331)
.....++.+..+ |..++..+. ...+ +..+.+.|..+..++.-..+-+..|...|.-.
T Consensus 1300 eqQv~Rhy~~ne----LteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehdSll 1361 (1567)
T KOG1015|consen 1300 EQQVERHYTMNE----LTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHDSLL 1361 (1567)
T ss_pred HHHHHHHhhHhh----hHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 888888887777 445555442 2222 34567889999999999999999888888643
No 11
>KOG0390|consensus
Probab=100.00 E-value=1.2e-68 Score=650.37 Aligned_cols=479 Identities=31% Similarity=0.491 Sum_probs=395.0
Q ss_pred ccccCCccHHHHHHHHHHHHHhc------CCCceEEecCCCCCHHHHHHHHHHHHHHhcCC-----CCcEEEEeCCccHH
Q psy1544 551 ILVNGKLKEYQIKGLEWMVSLFN------NNLNGILADEMGLGKTIQTIALITYLMEKKKV-----NGPFLIIVPLSTLS 619 (1331)
Q Consensus 551 ~l~~~~LrpyQ~~gv~~l~~~~~------~~~~gILADemGlGKTi~ai~li~~l~~~~~~-----~~p~LIV~P~sll~ 619 (1331)
..++..|||||.+|+.||+..+. +..|||+||+||+|||+++|++|..++...+. .+ .|||||.+++.
T Consensus 233 P~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k-~lVV~P~sLv~ 311 (776)
T KOG0390|consen 233 PLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINK-PLVVAPSSLVN 311 (776)
T ss_pred ccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccc-cEEEccHHHHH
Confidence 34567899999999999998753 45678999999999999999999999998877 44 69999999999
Q ss_pred HHHHHHHHHcC--CCcEEEecCChhH-HHHHHH----HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc
Q psy1544 620 NWSLEFERWAP--SVNVVAYKGSPHL-RKTLQA----QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH 692 (1331)
Q Consensus 620 qW~~E~~k~~p--~~~v~~~~g~~~~-r~~~~~----~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~ 692 (1331)
||..||.+|.. .+....++|.... .....+ ....-..-|++.+|+.+..+...+....+++||+||||++||.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 99999999986 4666666666543 111111 1122345689999999998888888889999999999999999
Q ss_pred chHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHH-HHHHHHHH
Q psy1544 693 HCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEE-TILIIRRL 771 (1331)
Q Consensus 693 ~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~-~~~~~~rL 771 (1331)
.+.++++|..+ .+++||+|||||+||++.|+|++|+|++|+++++...|...|..++...++....+++. ...-+..|
T Consensus 392 ~s~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 99999999987 89999999999999999999999999999999999999999998876654432222211 12337789
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
..+...|++||+-..+.+.||.+.+++|.|.+++.|..+|..+.... .... .. ...+..+..|+++|||
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~--------~~--~~~l~~~~~L~k~cnh 539 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRT--------LK--GYALELITKLKKLCNH 539 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhh--------hh--cchhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999988753 1100 00 1156778889999999
Q ss_pred ccchhhhHh--hhhhccC-----C-CCcccCCccccccchhHHHHHhhhhhhcC-CCeeEEEeccHHHHHHHHHHHHhcC
Q psy1544 852 PFMFQNIEE--KFSDHVG-----G-SGIVSGPDLYRVSGKFELLDRILPKLKST-GHRVLLFCQMTQLMNILEDYFSYRG 922 (1331)
Q Consensus 852 p~l~~~~~~--~~~~~~~-----~-~~~~~~~~l~~~s~K~~~L~~lL~~l~~~-g~KVLIFsq~~~~ld~L~~~L~~~g 922 (1331)
|.+....+. ....... . ........-...|+|+..|+.++...++. -.++++.++++.++++++.+++++|
T Consensus 540 P~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g 619 (776)
T KOG0390|consen 540 PSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRG 619 (776)
T ss_pred HHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcC
Confidence 998741111 1000100 0 00111112234589999999998655543 3577777889999999999999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceE
Q psy1544 923 FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 1002 (1331)
Q Consensus 923 ~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~ 1002 (1331)
+.++++||+|+..+|+.+++.||++.+..+|||+|+.|||+||||.+|++||+||++|||+.+.||++||||.||++.|+
T Consensus 620 ~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~ 699 (776)
T KOG0390|consen 620 YEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVY 699 (776)
T ss_pred ceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEE
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCCh
Q psy1544 1003 VLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTG 1042 (1331)
Q Consensus 1003 V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~~ 1042 (1331)
||+|++.||+||+||+++..|..+...|++......+...
T Consensus 700 iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~ 739 (776)
T KOG0390|consen 700 IYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFF 739 (776)
T ss_pred EEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccc
Confidence 9999999999999999999999999999987665554443
No 12
>KOG1002|consensus
Probab=100.00 E-value=1.8e-67 Score=586.37 Aligned_cols=472 Identities=30% Similarity=0.463 Sum_probs=385.5
Q ss_pred hhcccccccCCccHHHHHHHHHHHHHhc-CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH
Q psy1544 546 TEQASILVNGKLKEYQIKGLEWMVSLFN-NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLE 624 (1331)
Q Consensus 546 ~~qp~~l~~~~LrpyQ~~gv~~l~~~~~-~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E 624 (1331)
.+||.-++ ..|.|||++|+.|+.+... ...|||||||||+|||||+|+++.. .....|+|||||...+.||.+|
T Consensus 175 aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 175 AEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred ccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHH
Confidence 34555544 4799999999999998765 5678899999999999999999876 2345679999999999999999
Q ss_pred HHHHcC-CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHh-----------------ccCcccccCccEEEEeCC
Q psy1544 625 FERWAP-SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIK-----------------DKGPLAKLHWKYMIIDEG 686 (1331)
Q Consensus 625 ~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~-----------------~~~~l~~~~~~~vIiDEa 686 (1331)
+.++.. ..++++|+|....... ....+|+||+|||..+-. ..+.|+.++|..||+|||
T Consensus 250 I~~~T~gslkv~~YhG~~R~~ni----kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEA 325 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNI----KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEA 325 (791)
T ss_pred HHHhccCceEEEEEecccccCCH----HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhh
Confidence 999985 5889999998654322 234689999999987642 245688889999999999
Q ss_pred cccCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChh--------------------------
Q psy1544 687 HRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVS-------------------------- 740 (1331)
Q Consensus 687 Hrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~-------------------------- 740 (1331)
|.||+..+...+++..+ .+.+||+|||||+||++.|||+|+.||....|..+-
T Consensus 326 H~IK~R~snTArAV~~L-~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~ 404 (791)
T KOG1002|consen 326 HNIKDRQSNTARAVFAL-ETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNI 404 (791)
T ss_pred cccccccccHHHHHHhh-HhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchh
Confidence 99999999999999887 899999999999999999999999999877664210
Q ss_pred -----HHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hCCCceEEEEEcCCCHHHHHHHHH
Q psy1544 741 -----TFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES--QLPDKVEYIIKCDMSGLQKVLYRH 813 (1331)
Q Consensus 741 -----~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~--~LP~k~e~~v~~~ls~~q~~lY~~ 813 (1331)
.|...+..|+...| .+..........|.+|..+|+||++-.-.. .|||....+..--++..+..+|+.
T Consensus 405 m~h~~~~n~~mlk~IqkfG-----~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeS 479 (791)
T KOG1002|consen 405 MQHTCFFNHFMLKPIQKFG-----VEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYES 479 (791)
T ss_pred hhhhhhhcccccccchhhc-----ccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHH
Confidence 01111111222222 122334556688999999999999965443 589999988888899999999999
Q ss_pred HHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh-----------------------------------
Q psy1544 814 MHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI----------------------------------- 858 (1331)
Q Consensus 814 i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~----------------------------------- 858 (1331)
+........+.+...+....++..++..+.+||+...||+|....
T Consensus 480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FC 559 (791)
T KOG1002|consen 480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFC 559 (791)
T ss_pred HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHH
Confidence 988777666666666666788899999999999999999885110
Q ss_pred ----HhhhhhccCCCC-------------------------------ccc--CCccccccchhHHHHHhhhhhhcCC--C
Q psy1544 859 ----EEKFSDHVGGSG-------------------------------IVS--GPDLYRVSGKFELLDRILPKLKSTG--H 899 (1331)
Q Consensus 859 ----~~~~~~~~~~~~-------------------------------~~~--~~~l~~~s~K~~~L~~lL~~l~~~g--~ 899 (1331)
.+.+.....+.+ +.. ..+-|+.|.|+++|.+-|..+++.+ -
T Consensus 560 rlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~ 639 (791)
T KOG1002|consen 560 RLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTA 639 (791)
T ss_pred HHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccch
Confidence 000000000000 000 1123788999999999998887665 4
Q ss_pred eeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCC
Q psy1544 900 RVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD 979 (1331)
Q Consensus 900 KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~ 979 (1331)
|.||||||+.++|.|...|...|+.++.+.|+|+...|...|+.|.+ +.+|.|||+|..|||..|||+.|.+|+++|||
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 89999999999999999999999999999999999999999999984 78899999999999999999999999999999
Q ss_pred CCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy1544 980 WNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1033 (1331)
Q Consensus 980 wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~ 1033 (1331)
|||+...||.+|+|||||.++|+|.+|+.++|||++|+..+.+|.++++..|+.
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999865
No 13
>KOG4439|consensus
Probab=100.00 E-value=2.3e-64 Score=583.70 Aligned_cols=467 Identities=28% Similarity=0.446 Sum_probs=382.0
Q ss_pred ccccCCccHHHHHHHHHHHHHhc-CCCceEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCcEEEEeCCccHHHHH
Q psy1544 551 ILVNGKLKEYQIKGLEWMVSLFN-NNLNGILADEMGLGKTIQTIALITYLMEKK-------KVNGPFLIIVPLSTLSNWS 622 (1331)
Q Consensus 551 ~l~~~~LrpyQ~~gv~~l~~~~~-~~~~gILADemGlGKTi~ai~li~~l~~~~-------~~~~p~LIV~P~sll~qW~ 622 (1331)
..+...|.|||..|+.||+.... .+.||||||+||+|||+++|++|..-.... ....++|||||.+++.||.
T Consensus 320 ~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW~ 399 (901)
T KOG4439|consen 320 DGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQWE 399 (901)
T ss_pred CcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHHH
Confidence 34566899999999999998755 456789999999999999999997654321 1223699999999999999
Q ss_pred HHHHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHh----------ccCcccccCccEEEEeCCcccC
Q psy1544 623 LEFERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIK----------DKGPLAKLHWKYMIIDEGHRMK 690 (1331)
Q Consensus 623 ~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~----------~~~~l~~~~~~~vIiDEaHrik 690 (1331)
.|+++-.. -+.|++|+|... | .+. ......|+||||||..+.+ ....|..+.|.+||+||||.++
T Consensus 400 ~Ev~~rl~~n~LsV~~~HG~n~-r-~i~-~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 400 AEVARRLEQNALSVYLYHGPNK-R-EIS-AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHHHHHhhcceEEEEecCCcc-c-cCC-HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 99988764 478999999863 1 111 1234679999999998876 2456888999999999999999
Q ss_pred CcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHH
Q psy1544 691 NHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRR 770 (1331)
Q Consensus 691 n~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~r 770 (1331)
|..++-+.+++.+ ++..||+|||||+||++.|+|+|+.||+...|++...|.+++...-.. ..+|
T Consensus 477 N~~tq~S~AVC~L-~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~--------------g~~r 541 (901)
T KOG4439|consen 477 NSNTQCSKAVCKL-SAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG--------------GANR 541 (901)
T ss_pred ccchhHHHHHHHH-hhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc--------------chhh
Confidence 9999999999988 899999999999999999999999999999999999999888654221 2457
Q ss_pred HHHHHHHHHHHHHHHHHhh-----hCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccC------------c--c-----
Q psy1544 771 LHKVLRPFLLRRLKKEVES-----QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDG------------S--E----- 826 (1331)
Q Consensus 771 L~~~L~p~~lRR~k~~v~~-----~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~------------~--~----- 826 (1331)
|.-+.++.||||+|..... .||.+...++.++|+..+...|.-+.+....+... . .
T Consensus 542 lnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~ 621 (901)
T KOG4439|consen 542 LNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFI 621 (901)
T ss_pred hhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhc
Confidence 7778899999999999877 79999999999999999999998776543322200 0 0
Q ss_pred -----------------cccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhh----------------------hccC
Q psy1544 827 -----------------KGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFS----------------------DHVG 867 (1331)
Q Consensus 827 -----------------~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~----------------------~~~~ 867 (1331)
..+........++..+++||++|+|+-+.....+... +...
T Consensus 622 ~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~ 701 (901)
T KOG4439|consen 622 GGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKND 701 (901)
T ss_pred cccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcc
Confidence 0001112233468889999999999955422111000 0000
Q ss_pred CCCc-------------ccCCccccccchhHHHHHhhhhh-hcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 868 GSGI-------------VSGPDLYRVSGKFELLDRILPKL-KSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 868 ~~~~-------------~~~~~l~~~s~K~~~L~~lL~~l-~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
.... .......+.|.|+..+..++..+ ....+|++|.+||+.++++++..|...|+.|..++|...
T Consensus 702 ~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~ 781 (901)
T KOG4439|consen 702 ETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVL 781 (901)
T ss_pred cccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccc
Confidence 0000 00122356799999999999887 567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
..+|+.+++.||...++.+|+|+|..|||.||||.+|+|+|++|+.|||+...||.+|++|+||+|+|+||||++.||||
T Consensus 782 vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 782 VKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred hhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc
Q psy1544 1014 ERILAAARYKLNMDEKVIQAGM 1035 (1331)
Q Consensus 1014 E~I~~~~~~K~~l~~~vi~~g~ 1035 (1331)
++|...+..|++++..|+.+..
T Consensus 862 qrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 862 QRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred HHHHHHHHHHHHHHhhhccCcc
Confidence 9999999999999999997543
No 14
>KOG1016|consensus
Probab=100.00 E-value=4.5e-61 Score=554.79 Aligned_cols=516 Identities=30% Similarity=0.473 Sum_probs=399.0
Q ss_pred hcchhhhhhhhcccchhhhhhhcccccccCCccHHHHHHHHHHHHHh---------cCCCceEEecCCCCCHHHHHHHHH
Q psy1544 526 KNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLF---------NNNLNGILADEMGLGKTIQTIALI 596 (1331)
Q Consensus 526 ~~~~~~~~~~~~~~~~~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~---------~~~~~gILADemGlGKTi~ai~li 596 (1331)
..+.....+.+..|.-.|......+- +...|+|||+-||+||+... ..+.|||||+.||||||+|+|+|+
T Consensus 225 ~~d~~Grv~VN~~HPeeee~iflapq-la~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~ 303 (1387)
T KOG1016|consen 225 TEDKEGRVLVNAGHPEEEEDIFLAPQ-LAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFS 303 (1387)
T ss_pred CccccCcEEEecCCCCCCcceeehhh-hHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehh
Confidence 33444556667777765544333222 23469999999999997532 357789999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCC-----------CcEEEecCC-h--hHHHH-HHHHhhccCccEEEe
Q psy1544 597 TYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPS-----------VNVVAYKGS-P--HLRKT-LQAQMKASKFNVLLT 661 (1331)
Q Consensus 597 ~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~-----------~~v~~~~g~-~--~~r~~-~~~~~~~~~~~VvIt 661 (1331)
.-++.+...+. ||+|+|-.+|.||..||..|.|. +.|.++... + ..|.. +.. +.....|++.
T Consensus 304 diflRhT~AKt-VL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~--Wv~~GGVlLv 380 (1387)
T KOG1016|consen 304 DIFLRHTKAKT-VLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ--WVQTGGVLLV 380 (1387)
T ss_pred HHHhhcCccce-EEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH--HhccCCEEEe
Confidence 98888876555 99999999999999999999985 233333222 1 12222 222 2345679999
Q ss_pred eHHHHHhc--------------------------------------cCcccccCccEEEEeCCcccCCcchHHHHHHHHh
Q psy1544 662 TYEYVIKD--------------------------------------KGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTF 703 (1331)
Q Consensus 662 Tye~l~~~--------------------------------------~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~ 703 (1331)
.|++++-. ...|-+-..|+||+||+|||||..+.++.+|..+
T Consensus 381 GYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~I 460 (1387)
T KOG1016|consen 381 GYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAI 460 (1387)
T ss_pred hHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHh
Confidence 99987521 0012223689999999999999999999999987
Q ss_pred ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHH---HHHHHHHHHH
Q psy1544 704 YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRR---LHKVLRPFLL 780 (1331)
Q Consensus 704 ~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~r---L~~~L~p~~l 780 (1331)
++++||.|||-|+|||+-|.|++++|++|..+++..+|.+.|..|+. .|.+++.+..+..++..| ||.+|..|+.
T Consensus 461 -rtrRRiVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~-NGQCvDStPdDvklmryRtHVLhsLl~GFVQ 538 (1387)
T KOG1016|consen 461 -RTRRRIVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIK-NGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQ 538 (1387)
T ss_pred -hhceeEEEeccccccchHHHhhhheeccccccchHHHHHHHhhcccc-CCccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999985 466777787777666554 8999999999
Q ss_pred HHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHh
Q psy1544 781 RRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEE 860 (1331)
Q Consensus 781 RR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 860 (1331)
||+...+...||.+.+++|.+.+|..|+.+|+.+........... +..+ -.-+.++.-..+++|||.++..+.+
T Consensus 539 RR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~--~~~~----~NPLkAF~vCcKIWNHPDVLY~~l~ 612 (1387)
T KOG1016|consen 539 RRTHTVLKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAAN--NDAV----FNPLKAFSVCCKIWNHPDVLYRLLE 612 (1387)
T ss_pred hcchhhHhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccc--cccc----cChHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999999999999999999999999875544322110 1111 1223444556778899977633221
Q ss_pred h--hhhc-------------------cCC--------------------------CCc----ccC---------------
Q psy1544 861 K--FSDH-------------------VGG--------------------------SGI----VSG--------------- 874 (1331)
Q Consensus 861 ~--~~~~-------------------~~~--------------------------~~~----~~~--------------- 874 (1331)
+ ..+. ++. .+. ..+
T Consensus 613 k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~ 692 (1387)
T KOG1016|consen 613 KKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFE 692 (1387)
T ss_pred HhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHh
Confidence 1 0000 000 000 000
Q ss_pred ---CccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc------------------CCeEEEEcCCCC
Q psy1544 875 ---PDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR------------------GFKYMRLDGTTK 933 (1331)
Q Consensus 875 ---~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~------------------g~~~~~idG~~~ 933 (1331)
..+...+.|+-.+.+++.+-...|.|+||||+....++.|+.+|..+ ...|++++|.++
T Consensus 693 nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~ 772 (1387)
T KOG1016|consen 693 NYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTS 772 (1387)
T ss_pred hhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcc
Confidence 01123345666666666666677999999999999999999999865 246899999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
..+|+++|++||.+-+-.+.||+||++|..||||-+|+.+|+||..|||..+.||++|++|+||+|+++|||||+.+++|
T Consensus 773 a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lE 852 (1387)
T KOG1016|consen 773 AADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLE 852 (1387)
T ss_pred cchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhH
Confidence 99999999999976555569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccCcCChhHHHHHHHHHhccCC
Q psy1544 1014 ERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDD 1057 (1331)
Q Consensus 1014 E~I~~~~~~K~~l~~~vi~~g~~~~~~~~~e~~~~l~~il~~~~ 1057 (1331)
.+||.++..|..|.+.|++.-..+...+..+ ++.++..++
T Consensus 853 kkIydRQIsKqGmsdRvVDd~np~an~s~Ke----~enLl~~~e 892 (1387)
T KOG1016|consen 853 KKIYDRQISKQGMSDRVVDDANPDANISQKE----LENLLMYDE 892 (1387)
T ss_pred HHHHHHHHhhccchhhhhcccCccccccHHH----HHHHhhhhh
Confidence 9999999999999999999877776666555 555555443
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-60 Score=633.55 Aligned_cols=487 Identities=43% Similarity=0.709 Sum_probs=413.9
Q ss_pred hhhhhccc-ccccCCccHHHHHHHHHHH-HHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC-CCcEEEEeCCccHH
Q psy1544 543 EIVTEQAS-ILVNGKLKEYQIKGLEWMV-SLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV-NGPFLIIVPLSTLS 619 (1331)
Q Consensus 543 e~~~~qp~-~l~~~~LrpyQ~~gv~~l~-~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~-~~p~LIV~P~sll~ 619 (1331)
+.+...+. ..+.++|++||.+|+.|+. .+...+.+|||||+||+|||+|+|+++.++...... .+|+|||||.+++.
T Consensus 324 ~~~~~~~~~~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~ 403 (866)
T COG0553 324 EDLLNAPEPVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLS 403 (866)
T ss_pred hhhhccCchhhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHH
Confidence 33344444 5567899999999999999 788999999999999999999999999986666555 57999999999999
Q ss_pred HHHHHHHHHcCCCc-EEEecCChhH----HHHHHHHhhcc---CccEEEeeHHHHHh---ccCcccccCccEEEEeCCcc
Q psy1544 620 NWSLEFERWAPSVN-VVAYKGSPHL----RKTLQAQMKAS---KFNVLLTTYEYVIK---DKGPLAKLHWKYMIIDEGHR 688 (1331)
Q Consensus 620 qW~~E~~k~~p~~~-v~~~~g~~~~----r~~~~~~~~~~---~~~VvItTye~l~~---~~~~l~~~~~~~vIiDEaHr 688 (1331)
||.+||.+|.|.++ +.+++|.... +..+....... .++|++|||+.+.. +...+..+.|+++|+||||+
T Consensus 404 nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ 483 (866)
T COG0553 404 NWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHR 483 (866)
T ss_pred HHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHH
Confidence 99999999999999 9999998753 33443333322 38999999999999 99999999999999999999
Q ss_pred cCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHh-hhcCCCCC-ChhHHHHHhhccccccccccccCHHHHHH
Q psy1544 689 MKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLN-FLLPSIFK-SVSTFEQWFNAPFATTGEKVELNEEETIL 766 (1331)
Q Consensus 689 ikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~-fL~p~~~~-~~~~F~~~f~~p~~~~~~~~~~~~~~~~~ 766 (1331)
+||..+..++++. ..++.++++|||||++|++.|||++++ |+.|+.++ +...|..||..+......... ......
T Consensus 484 ikn~~s~~~~~l~-~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~ 560 (866)
T COG0553 484 IKNDQSSEGKALQ-FLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP--LEAREL 560 (866)
T ss_pred HhhhhhHHHHHHH-HHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc--hhhHHH
Confidence 9999999999999 458999999999999999999999999 99999999 568999999998876654322 233445
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhhhCCCceEEEEEcCCCHHHHHHHHHHHh---hhhhcccCcccccCC--Cc--chHH
Q psy1544 767 IIRRLHKVLRPFLLRRLKKE--VESQLPDKVEYIIKCDMSGLQKVLYRHMHT---KGILLTDGSEKGKQG--KG--GAKA 837 (1331)
Q Consensus 767 ~~~rL~~~L~p~~lRR~k~~--v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~---~~~~~~~~~~~~~~~--~~--~~~~ 837 (1331)
.+.+|+.++.||++||++.+ +...||++.+.++.|.++..|+.+|..+.. ............... .. ....
T Consensus 561 ~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (866)
T COG0553 561 GIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence 56669999999999999999 899999999999999999999999999887 333222211111000 01 2567
Q ss_pred HHHHHHHHHHhcCCccchhhh-HhhhhhccC-----CCCcccCCcccccc-chhHHHHHhh-hhhhcCCC--eeEEEecc
Q psy1544 838 LMNTIVQLRKLCNHPFMFQNI-EEKFSDHVG-----GSGIVSGPDLYRVS-GKFELLDRIL-PKLKSTGH--RVLLFCQM 907 (1331)
Q Consensus 838 l~~~l~~Lrk~~~hp~l~~~~-~~~~~~~~~-----~~~~~~~~~l~~~s-~K~~~L~~lL-~~l~~~g~--KVLIFsq~ 907 (1331)
+++.+++||++|+||.++... ......... .........++..+ +|+..+.++| ..+...|+ |||||+||
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~ 720 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQF 720 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCc
Confidence 889999999999999998654 221111000 01112233456777 9999999999 89999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccc
Q psy1544 908 TQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 987 (1331)
Q Consensus 908 ~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~Q 987 (1331)
+.++++|+.+|...++.+++++|+++...|..+++.|+++ .++.|||+|++|||.||||+.|++||+||++|||..+.|
T Consensus 721 t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Q 799 (866)
T COG0553 721 TPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQ 799 (866)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHH
Confidence 9999999999999999999999999999999999999975 678999999999999999999999999999999999999
Q ss_pred ccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy1544 988 AQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1033 (1331)
Q Consensus 988 aiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~ 1033 (1331)
|++|+|||||+++|.||+|++.||+||+|+.++..|..+...++++
T Consensus 800 a~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 800 AIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999986
No 16
>KOG1000|consensus
Probab=100.00 E-value=2.3e-54 Score=483.63 Aligned_cols=420 Identities=26% Similarity=0.373 Sum_probs=327.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcE
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNV 634 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v 634 (1331)
..|.|||++||.+.+. .++.+||||+||||||+|||+++.++.. .+|.|||||.++...|..+|.+|+|.+..
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 4699999999998885 6777899999999999999999998844 57899999999999999999999998654
Q ss_pred --EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc-cCCceee
Q psy1544 635 --VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-VAPHRLL 711 (1331)
Q Consensus 635 --~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-~~~~rll 711 (1331)
++..+....-. .-....|.|.+|+.+......|..-.|.+||+||+|++|+..++..+++..+. .+.|.||
T Consensus 270 i~vv~~~~D~~~~------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCccc------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEE
Confidence 33333321100 01124689999999999999888889999999999999999999888776654 4788999
Q ss_pred eccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q psy1544 712 LTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR-PFLLRRLKKEVESQ 790 (1331)
Q Consensus 712 LTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~-p~~lRR~k~~v~~~ 790 (1331)
|||||.-.++.|||.++..+++.+|.+..+|...|+..-... ...++. ...+...|+-+|. ..|+||+|.+|.++
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr-~~~Dyk---g~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVR-FCFDYK---GCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccc-eeeecC---CCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988887632211 111111 1122455666665 46899999999999
Q ss_pred CCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCC
Q psy1544 791 LPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSG 870 (1331)
Q Consensus 791 LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 870 (1331)
||+|...++.+. ...+-+.-+.+........ ........-...++..++
T Consensus 420 LPpKrr~Vv~~~-~gr~da~~~~lv~~a~~~t-------~~~~~e~~~~~l~l~y~~----------------------- 468 (689)
T KOG1000|consen 420 LPPKRREVVYVS-GGRIDARMDDLVKAAADYT-------KVNSMERKHESLLLFYSL----------------------- 468 (689)
T ss_pred CCccceEEEEEc-CCccchHHHHHHHHhhhcc-------hhhhhhhhhHHHHHHHHH-----------------------
Confidence 999966655532 2223222222222211100 000000000001111110
Q ss_pred cccCCccccccchhHHHHHhhhh----hhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcC
Q psy1544 871 IVSGPDLYRVSGKFELLDRILPK----LKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNA 946 (1331)
Q Consensus 871 ~~~~~~l~~~s~K~~~L~~lL~~----l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~ 946 (1331)
..-.|+..+.+.|.. ..+.+.|+|||+++..++|-|+.++..+++.++||||+|+..+|..+++.|+.
T Consensus 469 --------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~ 540 (689)
T KOG1000|consen 469 --------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQT 540 (689)
T ss_pred --------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcc
Confidence 012355555555444 45677899999999999999999999999999999999999999999999995
Q ss_pred CCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Q psy1544 947 PDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNM 1026 (1331)
Q Consensus 947 ~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l 1026 (1331)
+..+.|-++|..|||.||+|++|+.|||.+.+|||...+||.+|+||+||+..|.||+|+++||+|+.+|....+|++.
T Consensus 541 -seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~v 619 (689)
T KOG1000|consen 541 -SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDV 619 (689)
T ss_pred -ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHH
Confidence 6689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy1544 1027 DEKVI 1031 (1331)
Q Consensus 1027 ~~~vi 1031 (1331)
...+-
T Consensus 620 l~s~g 624 (689)
T KOG1000|consen 620 LGSVG 624 (689)
T ss_pred Hhhcc
Confidence 88764
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.9e-55 Score=553.58 Aligned_cols=434 Identities=21% Similarity=0.289 Sum_probs=326.2
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
+..|.|||+.++.+++... ..++|||||||||||++|++++..++..+. .+++|||||.+++.||..|+.+|+ ++.
T Consensus 150 ~~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~~g~-~~rvLIVvP~sL~~QW~~El~~kF-~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLLTGR-AERVLILVPETLQHQWLVEMLRRF-NLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-CCcEEEEcCHHHHHHHHHHHHHHh-CCC
Confidence 3469999999998776533 557899999999999999999998877653 467999999999999999998877 455
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCc---chHHHHHHHHhc-cC
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTFY-VA 706 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~~-~~ 706 (1331)
+.++.+................++++|+||+++.++. ..+....|++|||||||++++. .++.++.+..+. ++
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 6666655322111000112235789999999998754 3455669999999999999853 455677776654 46
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhc--cccc------cccccccCHHHH--------------
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNA--PFAT------TGEKVELNEEET-------------- 764 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~--p~~~------~~~~~~~~~~~~-------------- 764 (1331)
+++|+|||||++|+..|+|++|+||+|..|++...|....+. +++. .+.. ++....
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~--~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK--LSDDALNALGELLGEQDIEP 383 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc--CCHHHHHHHHHHhcccchhH
Confidence 799999999999999999999999999999999999764432 2110 0000 000000
Q ss_pred ------------HHHHHH-HHHHH-----HHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcc
Q psy1544 765 ------------ILIIRR-LHKVL-----RPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSE 826 (1331)
Q Consensus 765 ------------~~~~~r-L~~~L-----~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~ 826 (1331)
.....+ +..++ ..+|+|+++.+|. .+|.+....+.+++.+.....+...
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~------------ 450 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVS------------ 450 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHh------------
Confidence 000011 11111 2567788888876 5899999999998876533333210
Q ss_pred cccCCCcchHHHHHHHHHHHHhcCCcc-chhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEe
Q psy1544 827 KGKQGKGGAKALMNTIVQLRKLCNHPF-MFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFC 905 (1331)
Q Consensus 827 ~~~~~~~~~~~l~~~l~~Lrk~~~hp~-l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFs 905 (1331)
....++. +.+|. ++.... .....+..++|+.+|.++|.... +.||||||
T Consensus 451 --------------~~~~~~~-~l~pe~~~~~~~-------------~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~ 500 (956)
T PRK04914 451 --------------LEARARD-MLYPEQIYQEFE-------------DNATWWNFDPRVEWLIDFLKSHR--SEKVLVIC 500 (956)
T ss_pred --------------HHHHHHh-hcCHHHHHHHHh-------------hhhhccccCHHHHHHHHHHHhcC--CCeEEEEe
Confidence 0001111 22221 111000 01123456789999999998654 67999999
Q ss_pred ccHHHHHHHHHHH-HhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccc
Q psy1544 906 QMTQLMNILEDYF-SYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 984 (1331)
Q Consensus 906 q~~~~ld~L~~~L-~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~ 984 (1331)
++..+++.|...| ...|++++.|||+++..+|..+++.|+++++++.| ||||++||+|+||+.|++||+||+||||..
T Consensus 501 ~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~ 579 (956)
T PRK04914 501 AKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDL 579 (956)
T ss_pred CcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHH
Confidence 9999999999999 46699999999999999999999999975555665 788999999999999999999999999999
Q ss_pred cccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy1544 985 DLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFD 1037 (1331)
Q Consensus 985 ~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~ 1037 (1331)
|+||+||+||+||++.|.||.++..+|+++.|+.....|+++++.++..|..-
T Consensus 580 ~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v 632 (956)
T PRK04914 580 LEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRAL 632 (956)
T ss_pred HHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999876543
No 18
>KOG0383|consensus
Probab=100.00 E-value=6.7e-51 Score=491.86 Aligned_cols=391 Identities=42% Similarity=0.717 Sum_probs=349.7
Q ss_pred hcccccc--cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH
Q psy1544 547 EQASILV--NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLE 624 (1331)
Q Consensus 547 ~qp~~l~--~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E 624 (1331)
.||..+. ++.|.+||.+|++|+...+..+..+|||||||+|||++++.++..+.......+|+||++|.+++.+|..+
T Consensus 284 ~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e 363 (696)
T KOG0383|consen 284 DQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWERE 363 (696)
T ss_pred cCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCc
Confidence 4666554 58999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHH--------------------hhccCccEEEeeHHHHHhccCcccccCccEEEEe
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQ--------------------MKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIID 684 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~--------------------~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiD 684 (1331)
+..|+|+..++.|.|....+..+... .....++|.+++|+++..+...+..+.|.++|+|
T Consensus 364 ~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livd 443 (696)
T KOG0383|consen 364 FELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVD 443 (696)
T ss_pred hhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEee
Confidence 99999999999999998877655431 1235689999999999999999999999999999
Q ss_pred CCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHH
Q psy1544 685 EGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEET 764 (1331)
Q Consensus 685 EaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~ 764 (1331)
|+||++|..++++..+..+ ...++++|||||++|++.+|+++|+|+.|+.|++...|.+.|..- ..
T Consensus 444 e~~rlkn~~s~~f~~l~~~-~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~-------------~~ 509 (696)
T KOG0383|consen 444 EAHRLKNKQSKRFRVLTAY-PIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI-------------SC 509 (696)
T ss_pred chhhcccchhhhhhhcccc-ccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh-------------hH
Confidence 9999999999999988775 789999999999999999999999999999999999988777542 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHH
Q psy1544 765 ILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQ 844 (1331)
Q Consensus 765 ~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 844 (1331)
...+..||.++.|+|+||++.+|.+.+|.|.+.++.+.|+..|+.+|+.++......... ....-.++|++|+
T Consensus 510 ~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n~~me 582 (696)
T KOG0383|consen 510 EEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLNIVME 582 (696)
T ss_pred HHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999998876654432 2345578899999
Q ss_pred HHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCe
Q psy1544 845 LRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFK 924 (1331)
Q Consensus 845 Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~ 924 (1331)
||++|+|||++...+. ....+...+..+...++|+.+|..+++++...||||+||+||+.++|+|+++|...| .
T Consensus 583 l~K~~~hpy~~~~~e~-----~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~ 656 (696)
T KOG0383|consen 583 LRKQCNHPYLSPLEEP-----LEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-K 656 (696)
T ss_pred HHHhhcCcccCccccc-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-c
Confidence 9999999999976222 222233444567889999999999999999999999999999999999999999999 9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccc
Q psy1544 925 YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLG 964 (1331)
Q Consensus 925 ~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeG 964 (1331)
|.++||..+..+|+.+|++||++++.-+|||+||+|||.|
T Consensus 657 ~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 657 YERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999999999999999999998
No 19
>KOG1001|consensus
Probab=100.00 E-value=5.2e-48 Score=475.08 Aligned_cols=452 Identities=28% Similarity=0.460 Sum_probs=365.6
Q ss_pred HHHHHHHHHH--Hh-cCCCceEEecCCCCCHHHHHHHHHHHHHHhcC------CCCcEEEEeCCccHHHHHHHHHHHcC-
Q psy1544 561 QIKGLEWMVS--LF-NNNLNGILADEMGLGKTIQTIALITYLMEKKK------VNGPFLIIVPLSTLSNWSLEFERWAP- 630 (1331)
Q Consensus 561 Q~~gv~~l~~--~~-~~~~~gILADemGlGKTi~ai~li~~l~~~~~------~~~p~LIV~P~sll~qW~~E~~k~~p- 630 (1331)
+.....|++. .. ..-.|||+||+||+|||+++|+++........ ..+.+|||||.+++.||..|+++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 4444555543 22 23457899999999999999999876544333 34568999999999999999966654
Q ss_pred -CCcEEEecC-ChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCc
Q psy1544 631 -SVNVVAYKG-SPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPH 708 (1331)
Q Consensus 631 -~~~v~~~~g-~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~ 708 (1331)
.+.+.+|+| ... ......++||||||..+.. ..+..+.|-+||+||||.++|.+++.++++..+ .+.+
T Consensus 215 ~~l~v~v~~gr~kd-------~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L-~a~~ 284 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKD-------KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQL-DAKY 284 (674)
T ss_pred cceEEEEecccccc-------cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheee-ccce
Confidence 467788888 211 1234578899999999976 667778999999999999999999999888776 8999
Q ss_pred eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy1544 709 RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV- 787 (1331)
Q Consensus 709 rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v- 787 (1331)
||+|||||+||++.|||+++.|+.-..+.....|...+..|+..+.. .....+++.+|..+++||+|..-
T Consensus 285 RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~---------~~~~k~l~~~L~~v~lrrtK~~~~ 355 (674)
T KOG1001|consen 285 RWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY---------KEGVKTLQGILKKVMLRRTKEMEV 355 (674)
T ss_pred eeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH---------HHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999888887654432 34477889999999999998633
Q ss_pred ----hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHh---
Q psy1544 788 ----ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEE--- 860 (1331)
Q Consensus 788 ----~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~--- 860 (1331)
...||++...++.+.++..++.+|..+....................+..++..+.+||++|+||.++-....
T Consensus 356 ~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~ 435 (674)
T KOG1001|consen 356 DGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLG 435 (674)
T ss_pred cCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccc
Confidence 2368999999999999999999999988777665554444445556677888889999999999987621100
Q ss_pred --------------hhh----hccCCC---CcccC----------------------------------------Cc---
Q psy1544 861 --------------KFS----DHVGGS---GIVSG----------------------------------------PD--- 876 (1331)
Q Consensus 861 --------------~~~----~~~~~~---~~~~~----------------------------------------~~--- 876 (1331)
.+. ..+... .+... ..
T Consensus 436 ~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~ 515 (674)
T KOG1001|consen 436 DSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIN 515 (674)
T ss_pred cccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhh
Confidence 000 000000 00000 00
Q ss_pred -cccccchhHHHHHhhhhhhcCCC-eeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEE
Q psy1544 877 -LYRVSGKFELLDRILPKLKSTGH-RVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIF 954 (1331)
Q Consensus 877 -l~~~s~K~~~L~~lL~~l~~~g~-KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~ 954 (1331)
....|.|+..+..+|........ ++|||||++..+++++..|...|+.+.+++|.++...|...+..|+ .+..+.|+
T Consensus 516 ~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vl 594 (674)
T KOG1001|consen 516 DLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTAL 594 (674)
T ss_pred hccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHH
Confidence 00126677777777775554444 9999999999999999999999999999999999999999999999 67889999
Q ss_pred EeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy1544 955 VLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ 1032 (1331)
Q Consensus 955 LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~ 1032 (1331)
|+|.+|||.||||..|++||++|++|||....|||+||||+||+++|.|++|+..+|+|++|+.++.+|..+...+++
T Consensus 595 l~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 595 LMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887764
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-38 Score=392.47 Aligned_cols=384 Identities=18% Similarity=0.300 Sum_probs=269.1
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc-HHHHHHHHHHHcC--
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST-LSNWSLEFERWAP-- 630 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p-- 630 (1331)
...|||||.+++.+++. -+...+|||+++||+|||++++++++.+ .+++|||||.++ +.||.++|.+|+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 46899999999998864 1112579999999999999999988765 356999999976 5999999999973
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc----------CcccccCccEEEEeCCcccCCcchHHHHHH
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK----------GPLAKLHWKYMIIDEGHRMKNHHCKLTHIL 700 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~----------~~l~~~~~~~vIiDEaHrikn~~sk~~~~l 700 (1331)
...+..|.|....+ ......|+|+||+++.... ..|....|++||+||||++.+.. ..+++
T Consensus 326 ~~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~--fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM--FRRVL 396 (732)
T ss_pred CceEEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH--HHHHH
Confidence 45566777653211 1234689999999986431 23444589999999999996533 33344
Q ss_pred HHhccCCceeeeccCCCCCChHHHHHHHhhh-cCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHH
Q psy1544 701 NTFYVAPHRLLLTGTPLQNKLPELWALLNFL-LPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 779 (1331)
Q Consensus 701 ~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL-~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~ 779 (1331)
..+ .+.+||+|||||++++ +.+..++++ .|.++.. .|.+ ++.
T Consensus 397 ~~l-~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~e-----------------------------Li~--- 439 (732)
T TIGR00603 397 TIV-QAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWME-----------------------------LQK--- 439 (732)
T ss_pred Hhc-CcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHH-----------------------------HHh---
Confidence 443 7889999999999876 334445544 3333321 0110 000
Q ss_pred HHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhH
Q psy1544 780 LRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIE 859 (1331)
Q Consensus 780 lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 859 (1331)
...|.+.....|+|+|++.....|..... . ... .| .+
T Consensus 440 --------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-------------~----~k~------~l--~~---------- 476 (732)
T TIGR00603 440 --------KGFIANVQCAEVWCPMTPEFYREYLRENS-------------R----KRM------LL--YV---------- 476 (732)
T ss_pred --------CCccccceEEEEEecCCHHHHHHHHHhcc-------------h----hhh------HH--hh----------
Confidence 12355566678999999875444421100 0 000 00 00
Q ss_pred hhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Q psy1544 860 EKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGD 939 (1331)
Q Consensus 860 ~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~ 939 (1331)
....|+..+..++......|+|+||||+++..++.+...|. +..|+|+|+..+|..
T Consensus 477 -------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 477 -------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQ 532 (732)
T ss_pred -------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHH
Confidence 12368888888888766789999999999999888888773 356899999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-CccccccccccccccCCCCc-----eEEEEEeeCCCHH
Q psy1544 940 LLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNE-----VRVLRLMTVNSVE 1013 (1331)
Q Consensus 940 ~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w-Np~~~~QaiGRa~RiGQ~k~-----V~V~rli~~~TiE 1013 (1331)
++++|+.+ +.+.+ |++|++|++||||+.|++||++++++ |+.++.||+||+.|.+..+. .++|.|++.+|.|
T Consensus 533 il~~Fr~~-~~i~v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 533 ILQNFQHN-PKVNT-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHHhC-CCccE-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999842 24444 66779999999999999999999986 99999999999999987654 7999999999999
Q ss_pred HHHHHHHHH---HHHHHHHHHh--cCccc----CcCChhHHHHHHHHHhccCCcc
Q psy1544 1014 ERILAAARY---KLNMDEKVIQ--AGMFD----QKSTGSERHQFLQTILHQDDEE 1059 (1331)
Q Consensus 1014 E~I~~~~~~---K~~l~~~vi~--~g~~~----~~~~~~e~~~~l~~il~~~~~~ 1059 (1331)
+..-.+.+. .+...-+||. .|+.+ .-.+..++.++|+.+|...+..
T Consensus 611 ~~~s~~Rq~fl~~qGY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~~ 665 (732)
T TIGR00603 611 MYYSTKRQRFLVDQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDLD 665 (732)
T ss_pred HHHHHHHHHHHHHCCCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCcccc
Confidence 988443322 2222223321 11211 1345667778888888765443
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.8e-39 Score=373.48 Aligned_cols=280 Identities=39% Similarity=0.703 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHh---------cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCC--cEEEEeCCccHHHHHHHHHHH
Q psy1544 560 YQIKGLEWMVSLF---------NNNLNGILADEMGLGKTIQTIALITYLMEKKKVNG--PFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 560 yQ~~gv~~l~~~~---------~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~--p~LIV~P~sll~qW~~E~~k~ 628 (1331)
||+.||.||+.++ ....||||||+||+|||+++++++.++.......+ ++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78889999999999999999999998877655432 699999999999999999999
Q ss_pred c-C-CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHH-----hccCcccccCccEEEEeCCcccCCcchHHHHHHH
Q psy1544 629 A-P-SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVI-----KDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILN 701 (1331)
Q Consensus 629 ~-p-~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~-----~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~ 701 (1331)
+ + .+++++|.|....+.. .......++|+|+||+.+. .....+..++|++|||||||+++|..+..++++.
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRL--SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHT--TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred cccccccccccccccccccc--cccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 9 3 6889999888722221 1223567899999999999 5666777789999999999999999999999998
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
.+ .+.++|+|||||++|++.|+|++++||.|..+.+...|.++|..+ ..........+|..++.++++|
T Consensus 159 ~l-~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~----------~~~~~~~~~~~L~~~l~~~~~r 227 (299)
T PF00176_consen 159 KL-RARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP----------DKENSYENIERLRELLSEFMIR 227 (299)
T ss_dssp CC-CECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH----------HHTHHHHHHHHHHHHHCCCEEC
T ss_pred cc-ccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh----------ccccccccccccccccchhhhh
Confidence 85 799999999999999999999999999999999999999988664 2233455678999999999999
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
|++.++...+|+..+.++.|+|++.|+.+|+.+............ .........++..+++||++|+||++
T Consensus 228 ~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 228 RTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp HCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred hhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHhCCccc
Confidence 999999889999999999999999999999998877665544322 23445677899999999999999986
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-34 Score=376.79 Aligned_cols=451 Identities=20% Similarity=0.215 Sum_probs=282.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCC--
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPS-- 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~-- 631 (1331)
.++|+||.+.+..++. .++|++++||+|||++++.++..++. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4789999999987764 38999999999999999988887763 234679999999 5668999999988643
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcchHHHH--HHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHCKLTH--ILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~sk~~~--~l~~~~~~~ 707 (1331)
..+.++.|........ ......+|+|+|++.+..+. +.+....|++|||||||++.+..+..+. .+....+..
T Consensus 87 ~~v~~~~g~~~~~~r~---~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 87 EKIVVFTGEVSPEKRA---ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred ceEEEEeCCCCHHHHH---HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 4777787764432211 11235789999999987753 3444557999999999999876544322 222222355
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhH----HHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVST----FEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 783 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~----F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~ 783 (1331)
++++|||||.++ ...+..+++.|.......... +..++..+ ......+.+.. .+..++..|..++.++.
T Consensus 164 ~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~-~v~~~~v~l~~-----~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 164 LVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKV-KIEWVRVELPE-----ELKEIRDLLNEALKDRL 236 (773)
T ss_pred EEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccc-eeEEEEeCCcH-----HHHHHHHHHHHHHHHHH
Confidence 689999999866 455666666554332222211 22222211 11111112222 24567778888877777
Q ss_pred HHHHhhhC-CCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcc-----------cccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 784 KKEVESQL-PDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSE-----------KGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 784 k~~v~~~L-P~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
+....... +.....+....+...+..++..+............ .......+...+...+..++..+.+
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence 65443221 11111122223333333333332210000000000 0000000001111111111111100
Q ss_pred ccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEc
Q psy1544 852 PFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLD 929 (1331)
Q Consensus 852 p~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~id 929 (1331)
+.........+.+......+.....+...++|+..|.++|.... ..+.||||||++..+++.|..+|...|+.+..++
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 00000000000000000000000111234789999999998876 5778999999999999999999999999999999
Q ss_pred CC--------CCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCce
Q psy1544 930 GT--------TKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 930 G~--------~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
|. +++.+|..++.+|+.+. +. +|++|+++++|+|++.|++||+||++||+.+++||+||++|.|+ +
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~--~~-vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~ 470 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGE--FN-VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---G 470 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCC--CC-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---C
Confidence 97 88899999999999643 44 58899999999999999999999999999999999999999875 6
Q ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHH
Q psy1544 1002 RVLRLMTVNSVEERILAAARYKLNMDE 1028 (1331)
Q Consensus 1002 ~V~rli~~~TiEE~I~~~~~~K~~l~~ 1028 (1331)
+||.|++.+|+||.++.....|...+.
T Consensus 471 ~v~~l~~~~t~ee~~y~~~~~ke~~~~ 497 (773)
T PRK13766 471 RVVVLIAKGTRDEAYYWSSRRKEKKMK 497 (773)
T ss_pred EEEEEEeCCChHHHHHHHhhHHHHHHH
Confidence 789999999999999887776666553
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-32 Score=313.50 Aligned_cols=442 Identities=21% Similarity=0.226 Sum_probs=281.5
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHc--CC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWA--PS 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p~ 631 (1331)
.+.|.||...+...+. .|++++.+||||||++|+.++.+.+...+. .+|+++|+ .++.|...-|.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4689999999987774 489999999999999999999977776543 59999999 56688888888876 45
Q ss_pred CcEEEecCCh--hHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcchHHH--HHHHHhcc
Q psy1544 632 VNVVAYKGSP--HLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHCKLT--HILNTFYV 705 (1331)
Q Consensus 632 ~~v~~~~g~~--~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~sk~~--~~l~~~~~ 705 (1331)
..++.+.|.- +.|... .....|+++|++.+.+|. +.+..-++.++|+|||||.-+..+..+ +......+
T Consensus 87 ~~i~~ltGev~p~~R~~~-----w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 87 DEIAALTGEVRPEEREEL-----WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred hheeeecCCCChHHHHHH-----HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 7788888863 333322 235689999999999984 566666899999999999977766433 32223324
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCC----hhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKS----VSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~----~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
..+.|+|||||- ++...+-..++-|......- ..+...+. .......-++.+.. +...+...|..+|++.+
T Consensus 162 ~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv-~~~kve~ikV~lp~-e~~~ir~~l~~~l~~~L-- 236 (542)
T COG1111 162 NPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYV-KKIKVEWIKVDLPE-EIKEIRDLLRDALKPRL-- 236 (542)
T ss_pred CceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhh-ccceeEEEeccCcH-HHHHHHHHHHHHHHHHH--
Confidence 557899999994 55566666665554332210 00111111 11111111222222 23334445555555432
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhc----CC---c--
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLC----NH---P-- 852 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~----~h---p-- 852 (1331)
+.--.. -.....++ -.++.+....... ....... ..........+..++.+.++. +| +
T Consensus 237 --k~L~~~-----g~~~~~~~--~~~kdl~~~~~~~--~~~a~~~--~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~ 303 (542)
T COG1111 237 --KPLKEL-----GVIESSSP--VSKKDLLELRQIR--LIMAKNE--DSDKFRLLSVLAEAIKLAHALELLETQGIRPFY 303 (542)
T ss_pred --HHHHHc-----CceeccCc--ccHhHHHHHHHHH--HHhccCc--cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 211111 11111111 1233333332000 0000000 000001111111111111110 00 0
Q ss_pred -cchhhhHhhhhhccCCC----CcccC-------------CccccccchhHHHHHhhhhhh--cCCCeeEEEeccHHHHH
Q psy1544 853 -FMFQNIEEKFSDHVGGS----GIVSG-------------PDLYRVSGKFELLDRILPKLK--STGHRVLLFCQMTQLMN 912 (1331)
Q Consensus 853 -~l~~~~~~~~~~~~~~~----~~~~~-------------~~l~~~s~K~~~L~~lL~~l~--~~g~KVLIFsq~~~~ld 912 (1331)
|+-...++... +++ .+... ....-..+|++.|.+++.+.. ..+.|||||++++++++
T Consensus 304 ~Yl~~l~e~~~~---~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae 380 (542)
T COG1111 304 QYLEKLEEEATK---GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAE 380 (542)
T ss_pred HHHHHHHHHhcc---cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHH
Confidence 00000000000 000 00000 111234789999999999887 56689999999999999
Q ss_pred HHHHHHHhcCCeEE-EEcC--------CCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcc
Q psy1544 913 ILEDYFSYRGFKYM-RLDG--------TTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPH 983 (1331)
Q Consensus 913 ~L~~~L~~~g~~~~-~idG--------~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~ 983 (1331)
.|..+|...|.... ++-| +|++.+..++|++|++ +.+.| |+||.+|.+|||++++|.||+||+.-++.
T Consensus 381 ~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~--Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeI 457 (542)
T COG1111 381 EIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK--GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEI 457 (542)
T ss_pred HHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--CCceE-EEEcccccccCCCCcccEEEEecCCcHHH
Confidence 99999999988875 6666 6999999999999995 44555 99999999999999999999999999999
Q ss_pred ccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q psy1544 984 QDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGM 1035 (1331)
Q Consensus 984 ~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~g~ 1035 (1331)
+.+||.||++| ++.-+||.|+++||-|+.-+....+|.......+.+..
T Consensus 458 R~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~~~ 506 (542)
T COG1111 458 RSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRGLS 506 (542)
T ss_pred HHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 36778999999999999999999888877766665433
No 24
>KOG0298|consensus
Probab=99.97 E-value=3.4e-31 Score=326.50 Aligned_cols=267 Identities=24% Similarity=0.388 Sum_probs=198.7
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHH---------------hcCCCCcEEEEeCCccHHHHHHHHHHHcCCC-cEE
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLME---------------KKKVNGPFLIIVPLSTLSNWSLEFERWAPSV-NVV 635 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~---------------~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~-~v~ 635 (1331)
+..+..+++||+||+|||...+++...-.. .....|.+|||||.+++.||..||.+++++. ++.
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEE
Confidence 334556799999999999987766542211 0113467999999999999999999999876 999
Q ss_pred EecCChhHHHHHHHHhhccCccEEEeeHHHHHhc----------------------cCcccccCccEEEEeCCcccCCcc
Q psy1544 636 AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD----------------------KGPLAKLHWKYMIIDEGHRMKNHH 693 (1331)
Q Consensus 636 ~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~----------------------~~~l~~~~~~~vIiDEaHrikn~~ 693 (1331)
.|.|....-.. .......+|||+|||+.++.+ ..+|..+.|..||+|||+.+....
T Consensus 451 ~Y~Girk~~~~--~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWL--SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhccc--CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 99987432211 113456799999999998753 234667789999999999999988
Q ss_pred hHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHH
Q psy1544 694 CKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHK 773 (1331)
Q Consensus 694 sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~ 773 (1331)
|..++++..+ .+.++|++||||+|+ +.+|+.||+||.-..|.....|.+.+..++... .....+++
T Consensus 529 S~~a~M~~rL-~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r------------a~~~~~~d 594 (1394)
T KOG0298|consen 529 SAAAEMVRRL-HAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR------------AKCEPLLD 594 (1394)
T ss_pred HHHHHHHHHh-hhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH------------hhhhhHHH
Confidence 8988888877 788999999999999 999999999999999999999988776654322 12345788
Q ss_pred HHHHHHHHHHHHHHhh--hCCCceEEEEEcCCCHHHHHHHHHHHhhhhh------------cccCcc-cccCCCcchHHH
Q psy1544 774 VLRPFLLRRLKKEVES--QLPDKVEYIIKCDMSGLQKVLYRHMHTKGIL------------LTDGSE-KGKQGKGGAKAL 838 (1331)
Q Consensus 774 ~L~p~~lRR~k~~v~~--~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~------------~~~~~~-~~~~~~~~~~~l 838 (1331)
++...+.|+.+..|+. .+|+..+.+....+++.+..+|+........ ...... ...........+
T Consensus 595 l~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i 674 (1394)
T KOG0298|consen 595 LFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAII 674 (1394)
T ss_pred HHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHH
Confidence 8899999999999977 4688877777788888887777554321110 001100 011122234567
Q ss_pred HHHHHHHHHhcCCccc
Q psy1544 839 MNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 839 ~~~l~~Lrk~~~hp~l 854 (1331)
.+-+.+||++|+||..
T Consensus 675 ~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 675 LKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHHHHHHhhccccc
Confidence 7889999999999843
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=3.1e-29 Score=309.11 Aligned_cols=340 Identities=18% Similarity=0.203 Sum_probs=230.8
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC--
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP-- 630 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-- 630 (1331)
...|++||.+++..++. +.+|||..+||+|||++++.++..++... .+++|||||+. ++.||..+|.+|..
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~--~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY--EGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 36899999999987764 66789999999999999877766655443 34699999995 55999999999863
Q ss_pred CCcE-EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCce
Q psy1544 631 SVNV-VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 631 ~~~v-~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~r 709 (1331)
...+ .++.|... ....+|+|+|++.+.+....+. -.|++|||||||++.... +...+..+..++++
T Consensus 186 ~~~~~~i~~g~~~----------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~ 252 (501)
T PHA02558 186 REAMHKIYSGTAK----------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGKS--LTSIITKLDNCKFK 252 (501)
T ss_pred ccceeEEecCccc----------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccchh--HHHHHHhhhccceE
Confidence 2333 34444421 1346899999999976543221 268999999999997643 34455554457889
Q ss_pred eeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1544 710 LLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 789 (1331)
Q Consensus 710 llLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~ 789 (1331)
++|||||...... .+.+..++.|-... . ... .++ . ..
T Consensus 253 lGLTATp~~~~~~-~~~~~~~fG~i~~~-v-~~~-----------------------------~li---------~--~g 289 (501)
T PHA02558 253 FGLTGSLRDGKAN-ILQYVGLFGDIFKP-V-TTS-----------------------------QLM---------E--EG 289 (501)
T ss_pred EEEeccCCCcccc-HHHHHHhhCCceEE-e-cHH-----------------------------HHH---------h--CC
Confidence 9999999543221 11111111111000 0 000 000 0 00
Q ss_pred hCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCC
Q psy1544 790 QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGS 869 (1331)
Q Consensus 790 ~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 869 (1331)
.+.+.....+.+..+......+. ...+... +..+
T Consensus 290 ~l~~~~~~~v~~~~~~~~~~~~~-------------------~~~~~~~------~~~l--------------------- 323 (501)
T PHA02558 290 QVTDLKINSIFLRYPDEDRVKLK-------------------GEDYQEE------IKYI--------------------- 323 (501)
T ss_pred CcCCceEEEEeccCCHHHhhhhc-------------------ccchHHH------HHHH---------------------
Confidence 12222223333333322110000 0000000 0001
Q ss_pred CcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q psy1544 870 GIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDS 949 (1331)
Q Consensus 870 ~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~ 949 (1331)
.....+..++..++..+...|+++||||..+++++.|...|...|+++..++|+++.++|..+++.|+. +
T Consensus 324 --------~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~--~ 393 (501)
T PHA02558 324 --------TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG--G 393 (501)
T ss_pred --------hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC--C
Confidence 112345666777777777788899999999999999999999999999999999999999999999984 4
Q ss_pred CceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCc-eEEEEEeeCCC
Q psy1544 950 EYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE-VRVLRLMTVNS 1011 (1331)
Q Consensus 950 ~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~-V~V~rli~~~T 1011 (1331)
...|+|+|++.+|+|+|++.+|+||+++|..+...++|++||++|.|..|+ +.||.|+-.-.
T Consensus 394 ~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 394 KGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred CCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 455655566999999999999999999999999999999999999988765 89999886433
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=4.3e-29 Score=301.98 Aligned_cols=365 Identities=19% Similarity=0.252 Sum_probs=265.7
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP 630 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p 630 (1331)
....+||+||.+++..++..+.....|++..+||+|||++++.++..+. ..+|||||...+ .||...+.+++.
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcC
Confidence 3566899999999998887666688899999999999999999998773 239999999655 999988888875
Q ss_pred CC-cEEEecCChhHHHHHHHHhhccC-ccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 631 SV-NVVAYKGSPHLRKTLQAQMKASK-FNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~~-~v~~~~g~~~~r~~~~~~~~~~~-~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
.. .+..+.|.... .. ..|+|+||+++.+.. ..+....|++||||||||+.+...+... ..+..
T Consensus 106 ~~~~~g~~~~~~~~----------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~---~~~~~ 172 (442)
T COG1061 106 LNDEIGIYGGGEKE----------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRIL---ELLSA 172 (442)
T ss_pred CccccceecCceec----------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHH---Hhhhc
Confidence 43 45555554311 11 479999999998863 3344447999999999999877654332 23345
Q ss_pred Cc-eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PH-RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 707 ~~-rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
.+ +|+|||||...+...+..+..++.|-.+.. ..+.
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~-------------------------------------------~~~~ 209 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEV-------------------------------------------SLKE 209 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeec-------------------------------------------CHHH
Confidence 55 999999997555333333333332222211 0111
Q ss_pred HHh-hhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544 786 EVE-SQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD 864 (1331)
Q Consensus 786 ~v~-~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 864 (1331)
.+. ..|.+.....+.+.++......|............... . .-.....+.
T Consensus 210 li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~----------------- 261 (442)
T COG1061 210 LIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG-------T----LRAENEARR----------------- 261 (442)
T ss_pred HHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh-------h----hhHHHHHHH-----------------
Confidence 111 35778888889999999988888765443221111000 0 000000000
Q ss_pred ccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHh
Q psy1544 865 HVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 865 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~F 944 (1331)
.......|+..+..++.... .+.+++|||.....+..|...|...|+ +..++|.++..+|..+++.|
T Consensus 262 -----------~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 262 -----------IAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred -----------HhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 11233567788888887766 788999999999999999999999888 99999999999999999999
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccc-cCCCCc--eEEEEEeeCCCHHHHHHHHHH
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHR-IGQKNE--VRVLRLMTVNSVEERILAAAR 1021 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~R-iGQ~k~--V~V~rli~~~TiEE~I~~~~~ 1021 (1331)
+.+. +. +|++++++++|+|+++|+++|+..+.-++..+.|++||+.| ...+.. +..|-+++.++.+..+.....
T Consensus 329 r~g~--~~-~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 329 RTGG--IK-VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred HcCC--CC-EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9644 33 58999999999999999999999999999999999999999 444444 777888888888887765544
Q ss_pred H
Q psy1544 1022 Y 1022 (1331)
Q Consensus 1022 ~ 1022 (1331)
.
T Consensus 406 ~ 406 (442)
T COG1061 406 L 406 (442)
T ss_pred h
Confidence 4
No 27
>KOG0330|consensus
Probab=99.96 E-value=1.1e-28 Score=272.03 Aligned_cols=332 Identities=21% Similarity=0.307 Sum_probs=243.4
Q ss_pred hhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcCCCCcEEEEeCCccH-HH
Q psy1544 543 EIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKKVNGPFLIIVPLSTL-SN 620 (1331)
Q Consensus 543 e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~~~~p~LIV~P~sll-~q 620 (1331)
+.+.+.+..+.-..+.+.|.+++-.++. +..+|.+.+||+|||+. +|-++..|+..... -.+||++|+..| .|
T Consensus 70 ~~L~~ac~~l~~~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~-~~~lVLtPtRELA~Q 144 (476)
T KOG0330|consen 70 PELLEACQELGWKKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKL-FFALVLTPTRELAQQ 144 (476)
T ss_pred HHHHHHHHHhCcCCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCC-ceEEEecCcHHHHHH
Confidence 3344444444455788899999998884 88899999999999998 67788888875443 458999999988 66
Q ss_pred HHHHHHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc---ccccCccEEEEeCCcccCCcc--
Q psy1544 621 WSLEFERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP---LAKLHWKYMIIDEGHRMKNHH-- 693 (1331)
Q Consensus 621 W~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaHrikn~~-- 693 (1331)
....|+.++. ++++.++.|..+..... .....+.+|+|+|++.+.++... ++.-...++|+|||+|+.|..
T Consensus 145 I~e~fe~Lg~~iglr~~~lvGG~~m~~q~--~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~ 222 (476)
T KOG0330|consen 145 IAEQFEALGSGIGLRVAVLVGGMDMMLQA--NQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFE 222 (476)
T ss_pred HHHHHHHhccccCeEEEEEecCchHHHHH--HHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhH
Confidence 7777888764 46677777776554432 23456789999999999987543 333367899999999998765
Q ss_pred hHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHH
Q psy1544 694 CKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHK 773 (1331)
Q Consensus 694 sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~ 773 (1331)
..+..+|..+...++.+|+|||--.+ .. +
T Consensus 223 ~~ld~ILk~ip~erqt~LfsATMt~k-v~--------------------------------------------------k 251 (476)
T KOG0330|consen 223 EELDYILKVIPRERQTFLFSATMTKK-VR--------------------------------------------------K 251 (476)
T ss_pred HHHHHHHHhcCccceEEEEEeecchh-hH--------------------------------------------------H
Confidence 46778888887778889999994211 11 1
Q ss_pred HHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCcc
Q psy1544 774 VLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPF 853 (1331)
Q Consensus 774 ~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~ 853 (1331)
+.+. . |-. .+.|.-+. .|.. +-.|.+ -|
T Consensus 252 L~ra--------s----l~~----p~~v~~s~----ky~t----------------------------v~~lkQ----~y 279 (476)
T KOG0330|consen 252 LQRA--------S----LDN----PVKVAVSS----KYQT----------------------------VDHLKQ----TY 279 (476)
T ss_pred HHhh--------c----cCC----CeEEeccc----hhcc----------------------------hHHhhh----he
Confidence 1100 0 000 11111110 1111 111110 01
Q ss_pred chhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 854 MFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 854 l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
+| +...-|-..|..+|++. .|..+||||....+.+.+.-+|+..|+.+..+||.|+
T Consensus 280 lf----------------------v~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqms 335 (476)
T KOG0330|consen 280 LF----------------------VPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMS 335 (476)
T ss_pred Ee----------------------ccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhh
Confidence 11 11233667788888764 4568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
+..|..+++.|+++..+ +|+||++|++|||++.+|+||+||.|-+...|++|+||+.|.| +.-.++.||+.-.||
T Consensus 336 q~~Rlg~l~~Fk~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 336 QSKRLGALNKFKAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred HHHHHHHHHHHhccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999965444 6999999999999999999999999999999999999999999 666788889884444
No 28
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=2.2e-27 Score=294.75 Aligned_cols=322 Identities=18% Similarity=0.249 Sum_probs=220.7
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHH-HHHHHHHHhc----CCCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTI-ALITYLMEKK----KVNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai-~li~~l~~~~----~~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
.++.++|.+++..+++ +.+.|+..+||+|||++.+ .++..+.... .....+|||||+..| .||..++.++
T Consensus 151 ~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 4799999999988875 7899999999999999864 3444443321 112238999999766 8899999998
Q ss_pred cCC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 629 APS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 629 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
... +.+.+..|.......... .....+|+|+|++.+.... ..+...++++|||||||+|.... ..+..++..
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q~~~--l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQIYA--LRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred hcccCccEEEEeCCCCHHHHHHH--HHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 754 444444444333322222 2346899999999886542 22223357899999999997644 334455555
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
+....+.+++|||.- .++-.+. +.++
T Consensus 305 ~~~~~q~l~~SAT~p----~~v~~l~-----------------------------------------------~~l~--- 330 (545)
T PTZ00110 305 IRPDRQTLMWSATWP----KEVQSLA-----------------------------------------------RDLC--- 330 (545)
T ss_pred CCCCCeEEEEEeCCC----HHHHHHH-----------------------------------------------HHHh---
Confidence 545567899999941 1111100 0000
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
...| ..+.+.... ... +..
T Consensus 331 ------~~~~----v~i~vg~~~-----------------------l~~-----------------~~~----------- 349 (545)
T PTZ00110 331 ------KEEP----VHVNVGSLD-----------------------LTA-----------------CHN----------- 349 (545)
T ss_pred ------ccCC----EEEEECCCc-----------------------ccc-----------------CCC-----------
Confidence 0000 000000000 000 000
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~ 942 (1331)
+......+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||++++++|..+++
T Consensus 350 --------i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 350 --------IKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred --------eeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 000000112245777788888777667889999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 943 ~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.|+.+. +. +||||+++++|||++++++||+||+++++..|+||+||++|.|.+-. +|.|++.+
T Consensus 422 ~F~~G~--~~-ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 422 EFKTGK--SP-IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred HHhcCC--Cc-EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 999543 34 58999999999999999999999999999999999999999997654 45556654
No 29
>KOG0331|consensus
Probab=99.96 E-value=2.5e-27 Score=279.38 Aligned_cols=317 Identities=21% Similarity=0.317 Sum_probs=229.7
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHh----cCCCCc-EEEEeCCccH-HHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEK----KKVNGP-FLIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~----~~~~~p-~LIV~P~sll-~qW~~E~~k 627 (1331)
..+.|.|..+...+++ +.++|..+.||+|||+. .|.+|.++... ....+| +||++|+..| .|...++..
T Consensus 112 ~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 4788999999888886 88999999999999998 45566666542 122234 9999999888 778888888
Q ss_pred HcCCCc--EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCccc--CCcchHHHHHHH
Q psy1544 628 WAPSVN--VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRM--KNHHCKLTHILN 701 (1331)
Q Consensus 628 ~~p~~~--v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHri--kn~~sk~~~~l~ 701 (1331)
+...+. ..+++|.......+.. ...+.+|+|+|+..+.... +.+.--+..|+|+|||++| .+...++.+++.
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~--l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRD--LERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHH--HhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 886654 4555554333333222 3457899999999998753 4444446799999999999 456678888998
Q ss_pred HhccC-CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVA-PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLL 780 (1331)
Q Consensus 702 ~~~~~-~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~l 780 (1331)
.+... +..|+.|||- . . .++.+...|+
T Consensus 266 ~i~~~~rQtlm~saTw---------p--------------~----------------------------~v~~lA~~fl- 293 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATW---------P--------------K----------------------------EVRQLAEDFL- 293 (519)
T ss_pred hcCCCcccEEEEeeec---------c--------------H----------------------------HHHHHHHHHh-
Confidence 88444 4589999992 0 0 0111111111
Q ss_pred HHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHh
Q psy1544 781 RRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEE 860 (1331)
Q Consensus 781 RR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 860 (1331)
. -|-. ..+... ........+.++-..|
T Consensus 294 --------~-~~~~-i~ig~~--------------------------------~~~~a~~~i~qive~~----------- 320 (519)
T KOG0331|consen 294 --------N-NPIQ-INVGNK--------------------------------KELKANHNIRQIVEVC----------- 320 (519)
T ss_pred --------c-CceE-EEecch--------------------------------hhhhhhcchhhhhhhc-----------
Confidence 1 0100 000000 0001111222222222
Q ss_pred hhhhccCCCCcccCCccccccchhHHHHHhhhhhh-cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Q psy1544 861 KFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLK-STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGD 939 (1331)
Q Consensus 861 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~-~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~ 939 (1331)
....|...|..+|..+. ..+.||||||+....++.|+..|+..++++..|||..++.+|..
T Consensus 321 ------------------~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~ 382 (519)
T KOG0331|consen 321 ------------------DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDW 382 (519)
T ss_pred ------------------CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHH
Confidence 23568888888888876 45569999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 940 LLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 940 ~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+++.|.+++.. +||+|+++++|||++++++||+||+|-|...|+||+||++|.|++-..+.
T Consensus 383 ~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 383 VLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 99999865554 69999999999999999999999999999999999999999888765444
No 30
>KOG0354|consensus
Probab=99.95 E-value=3.2e-26 Score=277.07 Aligned_cols=458 Identities=19% Similarity=0.206 Sum_probs=258.5
Q ss_pred chhhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-
Q psy1544 540 TVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL- 618 (1331)
Q Consensus 540 ~~~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll- 618 (1331)
...+.......+.....||+||.+.++-++ +.|.|+|.+||+|||.+|+.++..+++..+. +.++++||+.-|
T Consensus 46 ~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 46 SLDESAAQRWIYPTNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLV 119 (746)
T ss_pred CCChhhhccccccCcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHH
Confidence 334444444455566789999999999777 7899999999999999999999888888765 669999999644
Q ss_pred HHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccc---cCccEEEEeCCcccCCcch-
Q psy1544 619 SNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAK---LHWKYMIIDEGHRMKNHHC- 694 (1331)
Q Consensus 619 ~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~---~~~~~vIiDEaHrikn~~s- 694 (1331)
.|....|..++....+....|+...+.... ......+|++.|++.+.++...... -.|.++|||||||..+..+
T Consensus 120 ~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~--~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIPYSVTGQLGDTVPRSNRG--EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCcccceeeccCccCCCchh--hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 777788888775555555555422221111 1234568999999999987543222 3589999999999865443
Q ss_pred -HHHHHH-HHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCC-ChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 695 -KLTHIL-NTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFK-SVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 695 -k~~~~l-~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~-~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
.+.+.+ .......+.|+|||||- ++.....+.+.-|...+-- ....-..-+..--........+ .........+|
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~-~~~~~~~~~~f 275 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDL-SLCERDIEDPF 275 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcH-HHhhhhhhhhH
Confidence 222222 22223447899999998 6666666555544433110 0000000000000000000110 11112234456
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcC---------------------CCHHHHHHHHHHH--hhhhhcccCccc-
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCD---------------------MSGLQKVLYRHMH--TKGILLTDGSEK- 827 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~---------------------ls~~q~~lY~~i~--~~~~~~~~~~~~- 827 (1331)
..+++|++.+-.... |.+....--... +.......|...+ ..++........
T Consensus 276 ~~~i~p~l~~l~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~ 351 (746)
T KOG0354|consen 276 GMIIEPLLQQLQEEG----LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYL 351 (746)
T ss_pred HHHHHHHHHHHHhcC----ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhh
Confidence 666777665433211 211110000000 0000000000000 000000000000
Q ss_pred -ccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhc--CCCeeEEE
Q psy1544 828 -GKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKS--TGHRVLLF 904 (1331)
Q Consensus 828 -~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~--~g~KVLIF 904 (1331)
........ .+..+.+-...........+.+. .....+. ....+|++.|.++|..... ...|+|||
T Consensus 352 ~~f~~e~~~-------~k~~~~~~e~~~~~~~~~~m~~~---~~l~~~~--~~~npkle~l~~~l~e~f~~~~dsR~IIF 419 (746)
T KOG0354|consen 352 EDFYEEVAL-------KKYLKLELEARLIRNFTENMNEL---EHLSLDP--PKENPKLEKLVEILVEQFEQNPDSRTIIF 419 (746)
T ss_pred hhhccccch-------hHHHHHHhcchhhHHHHHHHHhh---hhhhcCC--CccChhHHHHHHHHHHHhhcCCCccEEEE
Confidence 00000000 00000000000000000111000 0001111 1457899999999987765 34699999
Q ss_pred eccHHHHHHHHHHHH-hc--CCeEEEEcC--------CCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEE
Q psy1544 905 CQMTQLMNILEDYFS-YR--GFKYMRLDG--------TTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTV 973 (1331)
Q Consensus 905 sq~~~~ld~L~~~L~-~~--g~~~~~idG--------~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~V 973 (1331)
+.++..+..|..+|. .. |++...+-| +|++.+..++|+.|+++ .+. +||+|.+|.||||+..||.|
T Consensus 420 ve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G--~~N-vLVATSV~EEGLDI~ec~lV 496 (746)
T KOG0354|consen 420 VETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG--EIN-VLVATSVAEEGLDIGECNLV 496 (746)
T ss_pred EehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC--Ccc-EEEEecchhccCCcccccEE
Confidence 999999999999988 22 566666665 68999999999999964 444 59999999999999999999
Q ss_pred EEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHH-HHHHHHHHHHHHHh
Q psy1544 974 IIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILA-AARYKLNMDEKVIQ 1032 (1331)
Q Consensus 974 I~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~-~~~~K~~l~~~vi~ 1032 (1331)
|.||..-||...+||+|| +|. +.-+++.+.+ ++ +..-++ ....|..+....+.
T Consensus 497 IcYd~~snpIrmIQrrGR-gRa---~ns~~vll~t-~~-~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 497 ICYDYSSNPIRMVQRRGR-GRA---RNSKCVLLTT-GS-EVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred EEecCCccHHHHHHHhcc-ccc---cCCeEEEEEc-ch-hHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999 774 4445555555 43 333332 33444445444443
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.8e-26 Score=283.43 Aligned_cols=318 Identities=19% Similarity=0.292 Sum_probs=221.8
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc---
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA--- 629 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~--- 629 (1331)
..++.|+|.+++..++. +.+.|+..+||+|||++++..+...+........+|||||+..| .||..++..++
T Consensus 24 ~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~ 99 (460)
T PRK11776 24 YTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFI 99 (460)
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Confidence 34699999999998874 78899999999999988655554444433333358999999666 89999888764
Q ss_pred CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhcc
Q psy1544 630 PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYV 705 (1331)
Q Consensus 630 p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~ 705 (1331)
+++.+..+.|........... ....+|+|+|++.+.... ..+.-.++++|||||||+|.+.+ ..+...+..+..
T Consensus 100 ~~~~v~~~~Gg~~~~~~~~~l--~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~ 177 (460)
T PRK11776 100 PNIKVLTLCGGVPMGPQIDSL--EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA 177 (460)
T ss_pred CCcEEEEEECCCChHHHHHHh--cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc
Confidence 467787777775544433322 357899999999987642 22333467999999999986543 334455555545
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
....+++|||+-. ++-.+... |
T Consensus 178 ~~q~ll~SAT~~~----~~~~l~~~---------------~--------------------------------------- 199 (460)
T PRK11776 178 RRQTLLFSATYPE----GIAAISQR---------------F--------------------------------------- 199 (460)
T ss_pred ccEEEEEEecCcH----HHHHHHHH---------------h---------------------------------------
Confidence 5678999999621 11111000 0
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
+.... .+.+.... .... + .+-+
T Consensus 200 -----~~~~~--~i~~~~~~-------------------------~~~~-------------i-~~~~------------ 221 (460)
T PRK11776 200 -----QRDPV--EVKVESTH-------------------------DLPA-------------I-EQRF------------ 221 (460)
T ss_pred -----cCCCE--EEEECcCC-------------------------CCCC-------------e-eEEE------------
Confidence 00000 00000000 0000 0 0000
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
..+....|+..|..++... .+.++||||+....++.+...|...|+.+..+||++++.+|..+++.|+
T Consensus 222 ----------~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 222 ----------YEVSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred ----------EEeCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0011123666777777543 3458999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 946 APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 946 ~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
++ .+. +||+|+++++|||++++++||+||.+.++..|+||+||++|.|+.- ..|.|+..+
T Consensus 290 ~g--~~~-vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 290 NR--SCS-VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred cC--CCc-EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 54 344 5899999999999999999999999999999999999999999764 455566554
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.9e-26 Score=283.03 Aligned_cols=307 Identities=20% Similarity=0.239 Sum_probs=211.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 633 (1331)
..++|+|.+++..++. +.++++..+||+|||++.+..+.. ..+.+|||+|+..| .+|...+.... +.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4799999999998885 778999999999999875433321 13568999999544 88888888754 44
Q ss_pred EEEecCChh--HHHHHHHHhhccCccEEEeeHHHHHhccCc---c-cccCccEEEEeCCcccCCcchH---HH---HHHH
Q psy1544 634 VVAYKGSPH--LRKTLQAQMKASKFNVLLTTYEYVIKDKGP---L-AKLHWKYMIIDEGHRMKNHHCK---LT---HILN 701 (1331)
Q Consensus 634 v~~~~g~~~--~r~~~~~~~~~~~~~VvItTye~l~~~~~~---l-~~~~~~~vIiDEaHrikn~~sk---~~---~~l~ 701 (1331)
+..+.+... .+..+......+.++|+++|++.+...... + ....+.+|||||||++...+.. .+ ..+.
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 444444432 233333445667799999999998654322 2 3347899999999999654321 11 1233
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
..+.....++||||+-.....++...+++-.|.++... |.
T Consensus 158 ~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~~---------------------------------- 197 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------FD---------------------------------- 197 (470)
T ss_pred HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------CC----------------------------------
Confidence 33456678999999865444444444333222111000 00
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhh
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEK 861 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 861 (1331)
-|.. .+.+.-
T Consensus 198 ---------r~nl-~~~v~~------------------------------------------------------------ 207 (470)
T TIGR00614 198 ---------RPNL-YYEVRR------------------------------------------------------------ 207 (470)
T ss_pred ---------CCCc-EEEEEe------------------------------------------------------------
Confidence 0000 000000
Q ss_pred hhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Q psy1544 862 FSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLL 941 (1331)
Q Consensus 862 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i 941 (1331)
.....+..|..++.+ ...+.++||||..+..++.+...|...|+.+..+||+++.++|..++
T Consensus 208 -----------------~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~ 269 (470)
T TIGR00614 208 -----------------KTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVH 269 (470)
T ss_pred -----------------CCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHH
Confidence 000112222223322 23456789999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
+.|..+ .+. +|++|.++|+|||++++++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 270 ~~F~~g--~~~-vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 270 HKFQRD--EIQ-VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred HHHHcC--CCc-EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999954 444 489999999999999999999999999999999999999999988776554
No 33
>KOG0338|consensus
Probab=99.95 E-value=2.9e-26 Score=259.39 Aligned_cols=338 Identities=19% Similarity=0.285 Sum_probs=237.8
Q ss_pred hhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcC--CCCcEEEEeCCccH---
Q psy1544 545 VTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKK--VNGPFLIIVPLSTL--- 618 (1331)
Q Consensus 545 ~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~--~~~p~LIV~P~sll--- 618 (1331)
+....+.+......|.|...|--.+. +..-+-+..||+|||.. ++-++..|+.... ...+|||+||+..|
T Consensus 192 lLka~~~lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQ 267 (691)
T KOG0338|consen 192 LLKACSTLGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQ 267 (691)
T ss_pred HHHHHHhcCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHH
Confidence 33444555666888999998875553 55556678899999987 4556666655432 23469999999877
Q ss_pred -HHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCccccc---CccEEEEeCCcccCC--c
Q psy1544 619 -SNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKL---HWKYMIIDEGHRMKN--H 692 (1331)
Q Consensus 619 -~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~---~~~~vIiDEaHrikn--~ 692 (1331)
++....+..|+ ++.+.+..|+-+.+.. .......++|||.|++.++++...-..+ ...++|+|||+||.. +
T Consensus 268 v~sV~~qlaqFt-~I~~~L~vGGL~lk~Q--E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 268 VHSVTKQLAQFT-DITVGLAVGGLDLKAQ--EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred HHHHHHHHHhhc-cceeeeeecCccHHHH--HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHH
Confidence 45566667777 5888888888766543 4445678999999999999986554433 567899999999954 4
Q ss_pred chHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHH
Q psy1544 693 HCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLH 772 (1331)
Q Consensus 693 ~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~ 772 (1331)
...+..+++.+.+.+..+|+|||. .....||.++-
T Consensus 345 ademnEii~lcpk~RQTmLFSATM-teeVkdL~slS-------------------------------------------- 379 (691)
T KOG0338|consen 345 ADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASLS-------------------------------------------- 379 (691)
T ss_pred HHHHHHHHHhccccccceeehhhh-HHHHHHHHHhh--------------------------------------------
Confidence 557788888887888999999994 22223332211
Q ss_pred HHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCc
Q psy1544 773 KVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHP 852 (1331)
Q Consensus 773 ~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp 852 (1331)
|-..+. |.++-+ ...+..+..-+.++|-
T Consensus 380 ------------------L~kPvr--ifvd~~---------------------------~~~a~~LtQEFiRIR~----- 407 (691)
T KOG0338|consen 380 ------------------LNKPVR--IFVDPN---------------------------KDTAPKLTQEFIRIRP----- 407 (691)
T ss_pred ------------------cCCCeE--EEeCCc---------------------------cccchhhhHHHheecc-----
Confidence 000000 011000 0011111111111110
Q ss_pred cchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy1544 853 FMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTT 932 (1331)
Q Consensus 853 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~ 932 (1331)
-+..-+-.+|..++..+.. .++|||++....++.|.-.|...|+++.-+||+.
T Consensus 408 -------------------------~re~dRea~l~~l~~rtf~--~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsL 460 (691)
T KOG0338|consen 408 -------------------------KREGDREAMLASLITRTFQ--DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSL 460 (691)
T ss_pred -------------------------ccccccHHHHHHHHHHhcc--cceEEEEehHHHHHHHHHHHHHhhchhhhhcccc
Confidence 0111233445555555553 4899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 933 KAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 933 ~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
++.+|...++.|++...+ +||+|+++++|||+.++.+||+|+.|-+...|++|+||+.|.|. .-+-+.|+..+
T Consensus 461 tQ~QRlesL~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR--aGrsVtlvgE~-- 533 (691)
T KOG0338|consen 461 TQEQRLESLEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR--AGRSVTLVGES-- 533 (691)
T ss_pred cHHHHHHHHHHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhccc--CcceEEEeccc--
Confidence 999999999999965444 59999999999999999999999999999999999999999995 44556677776
Q ss_pred HHHHHHHH
Q psy1544 1013 EERILAAA 1020 (1331)
Q Consensus 1013 EE~I~~~~ 1020 (1331)
|.+|+.-.
T Consensus 534 dRkllK~i 541 (691)
T KOG0338|consen 534 DRKLLKEI 541 (691)
T ss_pred cHHHHHHH
Confidence 66666543
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=3.7e-26 Score=279.58 Aligned_cols=314 Identities=16% Similarity=0.229 Sum_probs=210.9
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC------CCCcEEEEeCCccH-HHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK------VNGPFLIIVPLSTL-SNWSLEFE 626 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~------~~~p~LIV~P~sll-~qW~~E~~ 626 (1331)
...+.++|.+++..++. +.+.|+..+||+|||++.+..+...+.... ....+|||||+..| .||..++.
T Consensus 21 ~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 21 YREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 35799999999998774 788999999999999986655444433221 11248999999666 89999998
Q ss_pred HHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcc--hHHHHHH
Q psy1544 627 RWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHH--CKLTHIL 700 (1331)
Q Consensus 627 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l 700 (1331)
.+.. ++.+..+.|......... .....++|+|+|++.+... ...+....+++|||||||++.... ..+...+
T Consensus 97 ~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il 174 (456)
T PRK10590 97 DYSKYLNIRSLVVFGGVSINPQMM--KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174 (456)
T ss_pred HHhccCCCEEEEEECCcCHHHHHH--HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHH
Confidence 8764 345555555544333222 2345789999999998653 222333467899999999986544 2333444
Q ss_pred HHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy1544 701 NTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLL 780 (1331)
Q Consensus 701 ~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~l 780 (1331)
..+....+.+++|||.-. ...++ ...+ +..+
T Consensus 175 ~~l~~~~q~l~~SAT~~~-~~~~l---~~~~--------------~~~~------------------------------- 205 (456)
T PRK10590 175 AKLPAKRQNLLFSATFSD-DIKAL---AEKL--------------LHNP------------------------------- 205 (456)
T ss_pred HhCCccCeEEEEeCCCcH-HHHHH---HHHH--------------cCCC-------------------------------
Confidence 444345568999999521 11111 1000 0000
Q ss_pred HHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHh
Q psy1544 781 RRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEE 860 (1331)
Q Consensus 781 RR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 860 (1331)
....+.-.-. .. . .+..+ +
T Consensus 206 --------------~~i~~~~~~~-------------------------~~-~-------------~i~~~-~------- 224 (456)
T PRK10590 206 --------------LEIEVARRNT-------------------------AS-E-------------QVTQH-V------- 224 (456)
T ss_pred --------------eEEEEecccc-------------------------cc-c-------------ceeEE-E-------
Confidence 0000000000 00 0 00000 0
Q ss_pred hhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Q psy1544 861 KFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDL 940 (1331)
Q Consensus 861 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~ 940 (1331)
..+....|..+|..++.. ....++||||.....++.|...|...|+.+..+||+++..+|..+
T Consensus 225 ---------------~~~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~ 287 (456)
T PRK10590 225 ---------------HFVDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRA 287 (456)
T ss_pred ---------------EEcCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
Confidence 000111233344444432 234689999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 941 LKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 941 i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
++.|+++ .+. +||||+++++|||++++++||+||+++++..|+|++||++|.|.+..+.+
T Consensus 288 l~~F~~g--~~~-iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 288 LADFKSG--DIR-VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHHcC--CCc-EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 9999854 444 58999999999999999999999999999999999999999998765443
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=9.5e-26 Score=275.18 Aligned_cols=316 Identities=16% Similarity=0.206 Sum_probs=214.5
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHH-HHHh---cCCCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITY-LMEK---KKVNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~-l~~~---~~~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
..+++++|.+++..++. +.++|+..+||+|||++++..+.. +... ......+|||+|+..| .||.+.+..|
T Consensus 21 ~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l 96 (434)
T PRK11192 21 YTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAREL 96 (434)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHH
Confidence 34789999999998874 778999999999999986554443 3322 1123459999999755 7888877777
Q ss_pred cC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 629 AP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 629 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
+. ++.+..+.|....... .......++|+|+|++.+.... ..+....+++|||||||+|...+ ..+...+..
T Consensus 97 ~~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~ 174 (434)
T PRK11192 97 AKHTHLDIATITGGVAYMNH--AEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAE 174 (434)
T ss_pred HccCCcEEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh
Confidence 54 4667777776544332 2223457899999999887542 23333467899999999996543 233333333
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
.....+.+++|||+-...+.++ ..++.
T Consensus 175 ~~~~~q~~~~SAT~~~~~~~~~------------------~~~~~----------------------------------- 201 (434)
T PRK11192 175 TRWRKQTLLFSATLEGDAVQDF------------------AERLL----------------------------------- 201 (434)
T ss_pred CccccEEEEEEeecCHHHHHHH------------------HHHHc-----------------------------------
Confidence 3334567999999632111111 11110
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
..... +.+..+.. ... ...+-+..
T Consensus 202 ---------~~~~~--i~~~~~~~------------------------~~~--------------~i~~~~~~------- 225 (434)
T PRK11192 202 ---------NDPVE--VEAEPSRR------------------------ERK--------------KIHQWYYR------- 225 (434)
T ss_pred ---------cCCEE--EEecCCcc------------------------ccc--------------CceEEEEE-------
Confidence 00000 00000000 000 00000000
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~ 942 (1331)
.-....|..+|..++.. ....++||||.....++.|...|...|+.+..+||+++..+|..+++
T Consensus 226 --------------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~ 289 (434)
T PRK11192 226 --------------ADDLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIK 289 (434)
T ss_pred --------------eCCHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 00113466666666643 23569999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 943 ~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
.|+++ .+. +||+|+++++|||++++++||+||+++++..|+||+||++|.|....+.+
T Consensus 290 ~f~~G--~~~-vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 290 RLTDG--RVN-VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HHhCC--CCc-EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 99954 444 58999999999999999999999999999999999999999998765444
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.2e-25 Score=270.87 Aligned_cols=317 Identities=16% Similarity=0.199 Sum_probs=214.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHH-HHHHhcC------CCCcEEEEeCCccH-HHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALIT-YLMEKKK------VNGPFLIIVPLSTL-SNWSLEFE 626 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~-~l~~~~~------~~~p~LIV~P~sll-~qW~~E~~ 626 (1331)
..+.|+|.+++..++. +.+.|+..+||+|||++.+..+. .++.... ....+|||||+..| .||..++.
T Consensus 29 ~~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 4789999999998774 78899999999999998654443 3433211 12348999999766 88888888
Q ss_pred HHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHH
Q psy1544 627 RWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHIL 700 (1331)
Q Consensus 627 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l 700 (1331)
.++. ++.+.++.|......... ....+++|+|+|++.+.... ..+....+.+|||||||++.... ..+...+
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQLK--VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHHH--HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 7764 466666666644333222 22356899999999887542 33344468999999999986543 2333334
Q ss_pred HHhcc--CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 701 NTFYV--APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 701 ~~~~~--~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
..+.. ....+++|||.-. ...++.. .+
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~-~~~~~~~-----------------~~--------------------------------- 211 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSY-RVRELAF-----------------EH--------------------------------- 211 (423)
T ss_pred HhCCCccceeEEEEeccCCH-HHHHHHH-----------------HH---------------------------------
Confidence 33322 2335889999521 1111000 00
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
+.......+ .-.. ... .. + .+.+.
T Consensus 212 ------------~~~p~~i~v--~~~~-----------------------~~~-~~----------i----~~~~~---- 235 (423)
T PRK04837 212 ------------MNNPEYVEV--EPEQ-----------------------KTG-HR----------I----KEELF---- 235 (423)
T ss_pred ------------CCCCEEEEE--cCCC-----------------------cCC-Cc----------e----eEEEE----
Confidence 000000000 0000 000 00 0 00000
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRG 938 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~ 938 (1331)
......|+.+|..++... ...++||||+....++.|...|...|+++..+||+++..+|.
T Consensus 236 ------------------~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~ 295 (423)
T PRK04837 236 ------------------YPSNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRL 295 (423)
T ss_pred ------------------eCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHH
Confidence 001134666666666542 356899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
.+++.|+++ .+. +||+|+++++|||++++++||+||+|+++..|.||+||++|.|+.-. ++.|++.
T Consensus 296 ~~l~~F~~g--~~~-vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 296 RILEEFTRG--DLD-ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred HHHHHHHcC--CCc-EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 999999854 444 59999999999999999999999999999999999999999997654 4445554
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=2e-25 Score=279.54 Aligned_cols=315 Identities=16% Similarity=0.193 Sum_probs=216.8
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc--
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA-- 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~-- 629 (1331)
...++.|+|.+++..++. +.+.|+..+||+|||++.+..+...+........+|||||+..| .||..++.+|.
T Consensus 25 G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~ 100 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKH 100 (629)
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 345799999999998874 77899999999999998644443333333333458999999655 89988887764
Q ss_pred -CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhc
Q psy1544 630 -PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFY 704 (1331)
Q Consensus 630 -p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~ 704 (1331)
+++.++.++|.......+.. .....+|||+|++.+.... ..+.-..+.+|||||||.|.+.. ..+..++..+.
T Consensus 101 ~~~i~v~~~~gG~~~~~q~~~--l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp 178 (629)
T PRK11634 101 MRGVNVVALYGGQRYDVQLRA--LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178 (629)
T ss_pred cCCceEEEEECCcCHHHHHHH--hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC
Confidence 56777777776544333322 2356899999999987642 22333467899999999986544 33445555554
Q ss_pred cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 705 VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 784 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k 784 (1331)
.....+++|||.- ....++. ..|
T Consensus 179 ~~~q~llfSAT~p-~~i~~i~--------------------------------------------------~~~------ 201 (629)
T PRK11634 179 EGHQTALFSATMP-EAIRRIT--------------------------------------------------RRF------ 201 (629)
T ss_pred CCCeEEEEEccCC-hhHHHHH--------------------------------------------------HHH------
Confidence 5567899999941 1111000 000
Q ss_pred HHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544 785 KEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD 864 (1331)
Q Consensus 785 ~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 864 (1331)
+.......+..... ... ...+.+
T Consensus 202 ------l~~~~~i~i~~~~~--------------------------~~~--------------~i~q~~----------- 224 (629)
T PRK11634 202 ------MKEPQEVRIQSSVT--------------------------TRP--------------DISQSY----------- 224 (629)
T ss_pred ------cCCCeEEEccCccc--------------------------cCC--------------ceEEEE-----------
Confidence 00000000000000 000 000000
Q ss_pred ccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHh
Q psy1544 865 HVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 865 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~F 944 (1331)
..+....|...|..+|... ...++||||.....++.|...|...|+.+..+||.+++.+|..+++.|
T Consensus 225 -----------~~v~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 225 -----------WTVWGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred -----------EEechhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 0011123666677766532 335899999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+.+ .+. +||||+++++|||++.+++||+||++.++..|+|++||++|.|..-.+.+
T Consensus 292 r~G--~~~-ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 292 KDG--RLD-ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred hCC--CCC-EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 954 333 59999999999999999999999999999999999999999997654333
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.2e-25 Score=280.23 Aligned_cols=318 Identities=16% Similarity=0.262 Sum_probs=214.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHH-HHHhc------CCCCcEEEEeCCccH-HHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITY-LMEKK------KVNGPFLIIVPLSTL-SNWSLEF 625 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~-l~~~~------~~~~p~LIV~P~sll-~qW~~E~ 625 (1331)
...+.|.|.++|..++. +.+.|+..+||+|||++++..+.. ++... .....+|||||+..| .|+...+
T Consensus 29 ~~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~ 104 (572)
T PRK04537 29 FTRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA 104 (572)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 34799999999998884 888999999999999986654443 43221 112459999999666 8899999
Q ss_pred HHHcCC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCcc--hHHHH
Q psy1544 626 ERWAPS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNHH--CKLTH 698 (1331)
Q Consensus 626 ~k~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~~--sk~~~ 698 (1331)
.+|+.. +.+..++|........ ......++|+|+|++.|.... ..+....+++|||||||++.... ..+..
T Consensus 105 ~~l~~~~~i~v~~l~Gg~~~~~q~--~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~ 182 (572)
T PRK04537 105 VKFGADLGLRFALVYGGVDYDKQR--ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRF 182 (572)
T ss_pred HHHhccCCceEEEEECCCCHHHHH--HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHH
Confidence 888754 4566666654433222 222356899999999887643 22333457899999999985533 23333
Q ss_pred HHHHhcc--CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHH
Q psy1544 699 ILNTFYV--APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR 776 (1331)
Q Consensus 699 ~l~~~~~--~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~ 776 (1331)
++..+.. ....+++|||.-. .+.++ .. .++..
T Consensus 183 il~~lp~~~~~q~ll~SATl~~-~v~~l---~~--------------~~l~~---------------------------- 216 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSH-RVLEL---AY--------------EHMNE---------------------------- 216 (572)
T ss_pred HHHhcccccCceEEEEeCCccH-HHHHH---HH--------------HHhcC----------------------------
Confidence 3433322 4567899999521 11111 00 00000
Q ss_pred HHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchh
Q psy1544 777 PFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQ 856 (1331)
Q Consensus 777 p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 856 (1331)
| ....+.... . .. . .++ |-+.
T Consensus 217 ---------------p--~~i~v~~~~-----------------~--------~~-~----------~i~----q~~~-- 237 (572)
T PRK04537 217 ---------------P--EKLVVETET-----------------I--------TA-A----------RVR----QRIY-- 237 (572)
T ss_pred ---------------C--cEEEecccc-----------------c--------cc-c----------cee----EEEE--
Confidence 0 000000000 0 00 0 000 0000
Q ss_pred hhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHH
Q psy1544 857 NIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAED 936 (1331)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~e 936 (1331)
......|+.+|..++.. ..+.++||||+....++.|...|...|+.+..+||+++..+
T Consensus 238 --------------------~~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 238 --------------------FPADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred --------------------ecCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 00112355556666543 34679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 937 RGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 937 R~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
|..+++.|+++ .+. +||+|+++++|||++++++||+||.+|++..|+|++||++|.|....+. .|++.
T Consensus 296 R~~il~~Fr~G--~~~-VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~~ 363 (572)
T PRK04537 296 RESLLNRFQKG--QLE-ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFACE 363 (572)
T ss_pred HHHHHHHHHcC--CCe-EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEecH
Confidence 99999999854 344 5999999999999999999999999999999999999999999865443 34543
No 39
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=1.7e-25 Score=277.14 Aligned_cols=320 Identities=17% Similarity=0.216 Sum_probs=211.8
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHH-HHHHHHh------cCCCCcEEEEeCCccH-HHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAL-ITYLMEK------KKVNGPFLIIVPLSTL-SNWSLEF 625 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~l-i~~l~~~------~~~~~p~LIV~P~sll-~qW~~E~ 625 (1331)
...+.|+|.+++..++. +.+.|+..+||+|||++++.. +..+... ......+|||+|+..| .|+..++
T Consensus 141 ~~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~ 216 (518)
T PLN00206 141 YEFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216 (518)
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 35799999999998874 789999999999999986543 4443321 1123458999999766 7888888
Q ss_pred HHHcCC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHH
Q psy1544 626 ERWAPS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHI 699 (1331)
Q Consensus 626 ~k~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~ 699 (1331)
..+... +.+..+.|+......... ...+++|+|+|++.+.... ..+...+..+|||||||+|...+ ..+...
T Consensus 217 ~~l~~~~~~~~~~~~gG~~~~~q~~~--l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 217 KVLGKGLPFKTALVVGGDAMPQQLYR--IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHHhCCCCceEEEEECCcchHHHHHH--hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 877644 344444444332222221 2356899999999876532 22333357899999999996543 334444
Q ss_pred HHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHH
Q psy1544 700 LNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 779 (1331)
Q Consensus 700 l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~ 779 (1331)
+..+ ...+.+++|||.-. ... .+...+ ..
T Consensus 295 ~~~l-~~~q~l~~SATl~~-~v~---~l~~~~---------------~~------------------------------- 323 (518)
T PLN00206 295 FQAL-SQPQVLLFSATVSP-EVE---KFASSL---------------AK------------------------------- 323 (518)
T ss_pred HHhC-CCCcEEEEEeeCCH-HHH---HHHHHh---------------CC-------------------------------
Confidence 4444 56788999999521 111 111100 00
Q ss_pred HHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhH
Q psy1544 780 LRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIE 859 (1331)
Q Consensus 780 lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 859 (1331)
.. ..+.+.-. ..... . +.+.
T Consensus 324 -------------~~--~~i~~~~~-----------------------~~~~~--------~---v~q~----------- 343 (518)
T PLN00206 324 -------------DI--ILISIGNP-----------------------NRPNK--------A---VKQL----------- 343 (518)
T ss_pred -------------CC--EEEEeCCC-----------------------CCCCc--------c---eeEE-----------
Confidence 00 00000000 00000 0 0000
Q ss_pred hhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh-cCCeEEEEcCCCCHHHHH
Q psy1544 860 EKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY-RGFKYMRLDGTTKAEDRG 938 (1331)
Q Consensus 860 ~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~-~g~~~~~idG~~~~~eR~ 938 (1331)
........|...|..+|........++|||++....++.|...|.. .|+.+..+||+++..+|.
T Consensus 344 ---------------~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 344 ---------------AIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred ---------------EEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 0001112244455555554444445899999999999999999975 699999999999999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.+++.|+++. +. +||+|+++++|||++++++||+||++.+...|+||+||++|.|... .++.|++.+
T Consensus 409 ~il~~Fr~G~--~~-ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGE--VP-VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred HHHHHHHCCC--CC-EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 9999999644 44 5899999999999999999999999999999999999999999754 444556543
No 40
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.7e-25 Score=273.77 Aligned_cols=319 Identities=19% Similarity=0.284 Sum_probs=216.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhcCC------CCcEEEEeCCccH-HHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKKKV------NGPFLIIVPLSTL-SNWSLEFE 626 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~~~------~~p~LIV~P~sll-~qW~~E~~ 626 (1331)
..++++|.+++..++. +.+.|++.+||+|||+..+. ++..+...... ...+|||+|+..| .||...+.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 4799999999987774 78899999999999988654 44444433211 2358999999766 88888888
Q ss_pred HHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--cccccCccEEEEeCCcccCCcch--HHHHHH
Q psy1544 627 RWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--PLAKLHWKYMIIDEGHRMKNHHC--KLTHIL 700 (1331)
Q Consensus 627 k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaHrikn~~s--k~~~~l 700 (1331)
.+.. ++.+..+.|+........ ......++|+|+|++++..... .+..-++++|||||||++.+.+. .+...+
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~-~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLK-QLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHH-HHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 7754 466777777654433322 2334568999999999875422 22223578999999999966442 333444
Q ss_pred HHhcc--CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 701 NTFYV--APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 701 ~~~~~--~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
..+.. ..+.+++|||... +..++ .. .|...
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~-~~~~~---~~--------------~~~~~------------------------------ 294 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTD-DVMNL---AK--------------QWTTD------------------------------ 294 (475)
T ss_pred HhCCCCCCceEEEEEeecCH-HHHHH---HH--------------HhccC------------------------------
Confidence 43321 3467999999421 11111 00 00000
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
| ..+.+.... ..... +. .|-
T Consensus 295 -------------~----~~v~~~~~~------------------------~~~~~----------~~---~~~------ 314 (475)
T PRK01297 295 -------------P----AIVEIEPEN------------------------VASDT----------VE---QHV------ 314 (475)
T ss_pred -------------C----EEEEeccCc------------------------CCCCc----------cc---EEE------
Confidence 0 001000000 00000 00 000
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRG 938 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~ 938 (1331)
..+..+.|..+|..++.. ..+.++||||+....++.|...|...|+.+..++|+++.++|.
T Consensus 315 -----------------~~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 315 -----------------YAVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRI 375 (475)
T ss_pred -----------------EEecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 001123466667666653 2346999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.+++.|+++ .+. +|+||+++++|||++++++||+||.++|...|+|++||++|.|+.-. ++.|+..+
T Consensus 376 ~~~~~Fr~G--~~~-vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 376 KTLEGFREG--KIR-VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred HHHHHHhCC--CCc-EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 999999854 444 58899999999999999999999999999999999999999997654 44445543
No 41
>KOG1123|consensus
Probab=99.93 E-value=4.5e-26 Score=256.57 Aligned_cols=381 Identities=20% Similarity=0.303 Sum_probs=254.2
Q ss_pred CCccHHHHHHHHHHHHHhcCC--CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNN--LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~--~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p- 630 (1331)
..+||||.+.+..|.- |+ +.||+.-++|.|||++.+..++.. ++.+||+|..++- .||..+|..|..
T Consensus 301 t~iRpYQEksL~KMFG---NgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred cccCchHHHHHHHHhC---CCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 4799999999997763 33 358999999999999988777644 4559999988665 999999999973
Q ss_pred -CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc----------cCcccccCccEEEEeCCcccCCcchHHHHH
Q psy1544 631 -SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD----------KGPLAKLHWKYMIIDEGHRMKNHHCKLTHI 699 (1331)
Q Consensus 631 -~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~----------~~~l~~~~~~~vIiDEaHrikn~~sk~~~~ 699 (1331)
+..++.|...... ....+..|+||||.++... ..++..-.|.++|+||.|.+-. ++++.
T Consensus 372 ~d~~i~rFTsd~Ke-------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---~MFRR 441 (776)
T KOG1123|consen 372 QDDQICRFTSDAKE-------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---KMFRR 441 (776)
T ss_pred CccceEEeeccccc-------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---HHHHH
Confidence 3445555544322 1345678999999998642 2346667899999999998743 44555
Q ss_pred HHHhccCCceeeeccCCCCCChHHHHHHHhhh-cCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 700 LNTFYVAPHRLLLTGTPLQNKLPELWALLNFL-LPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 700 l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL-~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
+..+..+...|+||||-+..+ |-..=|||| .|.++.. .|...-.
T Consensus 442 Vlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmdL~~------------------------------- 486 (776)
T KOG1123|consen 442 VLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMDLQK------------------------------- 486 (776)
T ss_pred HHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHHHHh-------------------------------
Confidence 545557778999999987542 333345665 3444321 1111000
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
...+....-..|+|.||+.-..-| +..... +.++ .
T Consensus 487 ---------kGhIA~VqCaEVWCpMt~eFy~eY---L~~~t~---------------kr~l---------L--------- 521 (776)
T KOG1123|consen 487 ---------KGHIAKVQCAEVWCPMTPEFYREY---LRENTR---------------KRML---------L--------- 521 (776)
T ss_pred ---------CCceeEEeeeeeecCCCHHHHHHH---Hhhhhh---------------hhhe---------e---------
Confidence 011223344579999998644444 321100 0000 0
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRG 938 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~ 938 (1331)
.+-...||....-+++.+..+|+|+|||+...-.+...+--| |-. .|.|.|++.+|.
T Consensus 522 ------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm 578 (776)
T KOG1123|consen 522 ------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERM 578 (776)
T ss_pred ------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHH
Confidence 011245888888888888899999999999876655544443 333 578999999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-CccccccccccccccCCCC----ceEEEEEeeCCCHH
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKN----EVRVLRLMTVNSVE 1013 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w-Np~~~~QaiGRa~RiGQ~k----~V~V~rli~~~TiE 1013 (1331)
++++.|+. +..+.-+.+ +++|...+||+.|+++|-..+.. +-.+..||.||+.|.-..+ .++.|-|+..+|.|
T Consensus 579 ~ILqnFq~-n~~vNTIFl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 579 KILQNFQT-NPKVNTIFL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHHhccc-CCccceEEE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 99999985 344444333 57999999999999999988865 7788999999999976433 28999999999988
Q ss_pred HHHHHH-HHH--HHHHHHHHHh--cCcccC----cCChhHHHHHHHHHhccCCcc
Q psy1544 1014 ERILAA-ARY--KLNMDEKVIQ--AGMFDQ----KSTGSERHQFLQTILHQDDEE 1059 (1331)
Q Consensus 1014 E~I~~~-~~~--K~~l~~~vi~--~g~~~~----~~~~~e~~~~l~~il~~~~~~ 1059 (1331)
..--.. ++. -+...-+||. .||... -.+..++.++|+.+|...+.+
T Consensus 657 M~YStKRQ~FLidQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~ 711 (776)
T KOG1123|consen 657 MYYSTKRQQFLIDQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLD 711 (776)
T ss_pred HHhhhhhhhhhhhcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhh
Confidence 643211 110 0001111221 133321 135677888999988876544
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=6.6e-25 Score=276.29 Aligned_cols=304 Identities=18% Similarity=0.219 Sum_probs=208.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~ 633 (1331)
..++|+|.+++..++. +.++++..+||+|||++.+..+. .. .+.+|||+|+. ++.+|...|.... +.
T Consensus 24 ~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~~----~g~tlVisPl~sL~~dqv~~l~~~g--i~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--VL----DGLTLVVSPLISLMKDQVDQLLANG--VA 91 (607)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--Hc----CCCEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4799999999998774 78899999999999987543332 21 34589999995 5578888887753 44
Q ss_pred EEEecCChhH--HHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcch------HHHHHHHHh
Q psy1544 634 VVAYKGSPHL--RKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHC------KLTHILNTF 703 (1331)
Q Consensus 634 v~~~~g~~~~--r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~s------k~~~~l~~~ 703 (1331)
+..+.+.... ..........+..+++++|++.+... ...+...++++|||||||++...+. .....+...
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 4445444322 22233344567789999999988643 2234445789999999999865332 111223333
Q ss_pred ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 704 YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 783 (1331)
Q Consensus 704 ~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~ 783 (1331)
+.....++||||+-.....++...+.+..|..+.. . |.
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~--~----~~------------------------------------ 209 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS--S----FD------------------------------------ 209 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC--C----CC------------------------------------
Confidence 34567899999986554444444433222111000 0 00
Q ss_pred HHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhh
Q psy1544 784 KKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFS 863 (1331)
Q Consensus 784 k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 863 (1331)
-|... +.+
T Consensus 210 -------r~nl~-~~v---------------------------------------------------------------- 217 (607)
T PRK11057 210 -------RPNIR-YTL---------------------------------------------------------------- 217 (607)
T ss_pred -------CCcce-eee----------------------------------------------------------------
Confidence 00000 000
Q ss_pred hccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy1544 864 DHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKK 943 (1331)
Q Consensus 864 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~ 943 (1331)
.....+...|..++.. ..+.++||||..+..++.+...|...|+.+..+||+++.++|..+++.
T Consensus 218 --------------~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~ 281 (607)
T PRK11057 218 --------------VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEA 281 (607)
T ss_pred --------------eeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 0000111222223322 346789999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 944 FNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 944 Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
|..+ .+. +||+|.++|+|||++++++||+||+|+|...|.|++||++|.|....+.+
T Consensus 282 F~~g--~~~-VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 282 FQRD--DLQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred HHCC--CCC-EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 9854 344 58999999999999999999999999999999999999999997665443
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.93 E-value=6.5e-25 Score=265.49 Aligned_cols=320 Identities=19% Similarity=0.271 Sum_probs=211.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC--
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS-- 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~-- 631 (1331)
..+.|+|..++..++. +.+.|+..+||+|||++++..+...+........+|||+|+..| .||...+..++..
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999998874 77889999999999998765555554433334569999999766 7777777766543
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~~ 707 (1331)
..+....|....+..... .....+|+|+|++.+... ...+...++++|||||||++...+ ..+...+..+....
T Consensus 125 ~~~~~~~g~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINK--LKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred ceEEEEECCcCHHHHHHH--HcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 334444555443333222 234578999999887643 222333467999999999985433 34455555554456
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.+++|||+- +...++... + +..+.. ..... ..+
T Consensus 203 ~~i~~SAT~~-~~~~~~~~~--~---------------~~~~~~-----~~~~~-----------------------~~~ 236 (401)
T PTZ00424 203 QVALFSATMP-NEILELTTK--F---------------MRDPKR-----ILVKK-----------------------DEL 236 (401)
T ss_pred EEEEEEecCC-HHHHHHHHH--H---------------cCCCEE-----EEeCC-----------------------CCc
Confidence 7899999962 111110000 0 000000 00000 000
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
.+.......+.+.
T Consensus 237 --~~~~~~~~~~~~~----------------------------------------------------------------- 249 (401)
T PTZ00424 237 --TLEGIRQFYVAVE----------------------------------------------------------------- 249 (401)
T ss_pred --ccCCceEEEEecC-----------------------------------------------------------------
Confidence 0000000000000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
....+...+..++... ...++||||.....++.+...|...++.+..+||+++.++|..+++.|+++
T Consensus 250 -----------~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 250 -----------KEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred -----------hHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 0011223333333221 235899999999999999999999999999999999999999999999953
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
.+. +|++|+++++|||++++++||+||++.+...|.|++||++|.|..- .++.|++.+.
T Consensus 317 --~~~-vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~~ 375 (401)
T PTZ00424 317 --STR-VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKG--VAINFVTPDD 375 (401)
T ss_pred --CCC-EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCc--eEEEEEcHHH
Confidence 444 5899999999999999999999999999999999999999998643 4555676553
No 44
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.6e-24 Score=264.84 Aligned_cols=334 Identities=22% Similarity=0.316 Sum_probs=233.0
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHH-HHHHHHHHHhcCCCCc-EEEEeCCccH-HHHHHHHHHHc
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQT-IALITYLMEKKKVNGP-FLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~a-i~li~~l~~~~~~~~p-~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
......|.|..++..++. +.+.|..+.||+|||+.. |.+|..+......... +||++|+..| .|..+++.++.
T Consensus 48 gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~ 123 (513)
T COG0513 48 GFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLG 123 (513)
T ss_pred CCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHH
Confidence 345789999999998885 788999999999999884 4555554321222222 8999999877 77778887776
Q ss_pred C---CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 630 P---SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 630 p---~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
. .+.+.++.|.......... +.. +.+|||.|+..+.... ..+......++|+|||++|.+.+ ..+..++..
T Consensus 124 ~~~~~~~~~~i~GG~~~~~q~~~-l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~ 201 (513)
T COG0513 124 KNLGGLRVAVVYGGVSIRKQIEA-LKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKA 201 (513)
T ss_pred hhcCCccEEEEECCCCHHHHHHH-Hhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHh
Confidence 4 4667777776665555533 333 5999999999998653 34555578999999999997654 355566666
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
+...++.+++|||--. . +..+. +.+
T Consensus 202 ~p~~~qtllfSAT~~~-~---i~~l~-----------------------------------------------~~~---- 226 (513)
T COG0513 202 LPPDRQTLLFSATMPD-D---IRELA-----------------------------------------------RRY---- 226 (513)
T ss_pred CCcccEEEEEecCCCH-H---HHHHH-----------------------------------------------HHH----
Confidence 6456788999999421 1 11111 000
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
+.... .+.+.... ..... .. ..+.+
T Consensus 227 --------l~~p~--~i~v~~~~----------------------~~~~~-------------~~-i~q~~--------- 251 (513)
T COG0513 227 --------LNDPV--EIEVSVEK----------------------LERTL-------------KK-IKQFY--------- 251 (513)
T ss_pred --------ccCCc--EEEEcccc----------------------ccccc-------------cC-ceEEE---------
Confidence 00000 11110000 00000 00 00000
Q ss_pred hhccCCCCcccCCccccc-cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRV-SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLL 941 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~-s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i 941 (1331)
..+.. ..|+.+|..++...... ++||||..+..++.|...|..+|+++..|||++++.+|..++
T Consensus 252 -------------~~v~~~~~k~~~L~~ll~~~~~~--~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 252 -------------LEVESEEEKLELLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred -------------EEeCCHHHHHHHHHHHHhcCCCC--eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 00111 14888888888764433 799999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHH
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAAR 1021 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~ 1021 (1331)
+.|+++ .+. +||+|+++++|||+..+++||+||.+.++..|+||+||++|.|.+- ..+.|++. .-|...+....
T Consensus 317 ~~F~~g--~~~-vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie 390 (513)
T COG0513 317 EKFKDG--ELR-VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIE 390 (513)
T ss_pred HHHHcC--CCC-EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHH
Confidence 999954 444 5999999999999999999999999999999999999999999444 55666766 22555555544
Q ss_pred HH
Q psy1544 1022 YK 1023 (1331)
Q Consensus 1022 ~K 1023 (1331)
..
T Consensus 391 ~~ 392 (513)
T COG0513 391 KR 392 (513)
T ss_pred HH
Confidence 44
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.93 E-value=1.9e-24 Score=272.92 Aligned_cols=304 Identities=17% Similarity=0.205 Sum_probs=212.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSV 632 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 632 (1331)
..+++|+|.+++..++. +.+++++.+||+|||+++...+. +. .+.+|||+|+ +++.++...|... ++
T Consensus 11 ~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~~----~g~~lVisPl~sL~~dq~~~l~~~--gi 78 (591)
T TIGR01389 11 YDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--LL----KGLTVVISPLISLMKDQVDQLRAA--GV 78 (591)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--Hc----CCcEEEEcCCHHHHHHHHHHHHHc--CC
Confidence 34799999999998874 77899999999999998653332 21 3558999999 5558888888875 35
Q ss_pred cEEEecCChhH--HHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcch-------HHHHHHH
Q psy1544 633 NVVAYKGSPHL--RKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHC-------KLTHILN 701 (1331)
Q Consensus 633 ~v~~~~g~~~~--r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~s-------k~~~~l~ 701 (1331)
.+..++++... ...+......+.++|+++|++.+... ...+...++++|||||||++...+. ++....
T Consensus 79 ~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~- 157 (591)
T TIGR01389 79 AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA- 157 (591)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH-
Confidence 55555554332 23333445567899999999988643 2234455789999999999864331 122222
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
..+....+++||||+-.....++...+.+-.+..+.+ .|.
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~---------------------------------- 197 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD---------------------------------- 197 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC----------------------------------
Confidence 2233445899999985544444443332211111000 000
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhh
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEK 861 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 861 (1331)
-|.....
T Consensus 198 ---------r~nl~~~---------------------------------------------------------------- 204 (591)
T TIGR01389 198 ---------RPNLRFS---------------------------------------------------------------- 204 (591)
T ss_pred ---------CCCcEEE----------------------------------------------------------------
Confidence 0000000
Q ss_pred hhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Q psy1544 862 FSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLL 941 (1331)
Q Consensus 862 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i 941 (1331)
+.....+...|..++... .+.++||||.....++.+...|...|+.+..+||+++.++|..++
T Consensus 205 ---------------v~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 205 ---------------VVKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred ---------------EEeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 000112334444444432 266899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+.|..+. +. +||+|.++|.|||++++++||+||+++|...|.|++||++|.|....+.+
T Consensus 268 ~~F~~g~--~~-vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 268 EDFLYDD--VK-VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred HHHHcCC--Cc-EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 9998543 44 59999999999999999999999999999999999999999997766543
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.93 E-value=9.5e-25 Score=275.36 Aligned_cols=310 Identities=18% Similarity=0.187 Sum_probs=207.6
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~ 631 (1331)
....+||+|.++|..++. +.++|+..+||+|||++....+.. . .+.+|||+|+.-| .++...+... +
T Consensus 457 G~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~---~---~GiTLVISPLiSLmqDQV~~L~~~--G 524 (1195)
T PLN03137 457 GNHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI---C---PGITLVISPLVSLIQDQIMNLLQA--N 524 (1195)
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH---c---CCcEEEEeCHHHHHHHHHHHHHhC--C
Confidence 346899999999998875 889999999999999986444322 1 3569999999555 5466666553 4
Q ss_pred CcEEEecCChhHHH--HHHHHhh--ccCccEEEeeHHHHHhcc---Cccc----ccCccEEEEeCCcccCCcchH---HH
Q psy1544 632 VNVVAYKGSPHLRK--TLQAQMK--ASKFNVLLTTYEYVIKDK---GPLA----KLHWKYMIIDEGHRMKNHHCK---LT 697 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~--~~~~~~~--~~~~~VvItTye~l~~~~---~~l~----~~~~~~vIiDEaHrikn~~sk---~~ 697 (1331)
+....+.+...... .+..... .+.++|+++|++.+.... ..+. ...+.+|||||||++...+.. -+
T Consensus 525 I~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdY 604 (1195)
T PLN03137 525 IPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDY 604 (1195)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHH
Confidence 55555555433222 1222222 267899999999986421 1121 124689999999998654311 11
Q ss_pred ---HHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHH
Q psy1544 698 ---HILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 774 (1331)
Q Consensus 698 ---~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~ 774 (1331)
..+...+....+++||||.-.....++...|.+..+.++.. -|..
T Consensus 605 r~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf~R-------------------------- 652 (1195)
T PLN03137 605 QGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SFNR-------------------------- 652 (1195)
T ss_pred HHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------ccCc--------------------------
Confidence 22444445667899999976555555554443322111100 0000
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
|.....++. .
T Consensus 653 -----------------pNL~y~Vv~-k---------------------------------------------------- 662 (1195)
T PLN03137 653 -----------------PNLWYSVVP-K---------------------------------------------------- 662 (1195)
T ss_pred -----------------cceEEEEec-c----------------------------------------------------
Confidence 000000000 0
Q ss_pred hhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCH
Q psy1544 855 FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKA 934 (1331)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~ 934 (1331)
....+..|..++... ..+...||||..+..++.|...|...|+.+..+||+++.
T Consensus 663 -------------------------~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ 716 (1195)
T PLN03137 663 -------------------------TKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDP 716 (1195)
T ss_pred -------------------------chhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCH
Confidence 000011122222211 123478999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEE
Q psy1544 935 EDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 1005 (1331)
Q Consensus 935 ~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~r 1005 (1331)
++|..+++.|..+ .+. +||+|.++|+|||++++++||+||+|.+...|.|++|||+|.|....+.+|+
T Consensus 717 eeR~~vqe~F~~G--ei~-VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 717 AQRAFVQKQWSKD--EIN-IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHHHhcC--CCc-EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999854 344 5899999999999999999999999999999999999999999887766554
No 47
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.3e-25 Score=216.79 Aligned_cols=106 Identities=60% Similarity=0.950 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
|++.|+.|++.|++++|++||+++++|..+|++..+||||++|++||||++|++||.+|.|.|+++|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
||++||.||.+|..|+++|.+.++++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998864
No 48
>KOG0342|consensus
Probab=99.92 E-value=1.8e-24 Score=246.00 Aligned_cols=321 Identities=20% Similarity=0.304 Sum_probs=224.4
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh----cCCCCcEEEEeCCccH-HHHHH---HH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK----KKVNGPFLIIVPLSTL-SNWSL---EF 625 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~----~~~~~p~LIV~P~sll-~qW~~---E~ 625 (1331)
-.++.+.|...+.-++. +.+.+.+.-||+|||+..+..+..++.. .+...-+|||||+..| .|-.. ++
T Consensus 102 F~~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~L 177 (543)
T KOG0342|consen 102 FETMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKEL 177 (543)
T ss_pred ccchhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHH
Confidence 35788999998887664 7788999999999999855444443332 2223348999999888 45444 45
Q ss_pred HHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc----ccccCccEEEEeCCcccCC--cchHHHHH
Q psy1544 626 ERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP----LAKLHWKYMIIDEGHRMKN--HHCKLTHI 699 (1331)
Q Consensus 626 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~----l~~~~~~~vIiDEaHrikn--~~sk~~~~ 699 (1331)
.++.++..+.+..|....+..... +. ...+++|.|++.+..+... +.+ .-+++|+|||+|+.. +.-.+-++
T Consensus 178 l~~h~~~~v~~viGG~~~~~e~~k-l~-k~~niliATPGRLlDHlqNt~~f~~r-~~k~lvlDEADrlLd~GF~~di~~I 254 (543)
T KOG0342|consen 178 LKYHESITVGIVIGGNNFSVEADK-LV-KGCNILIATPGRLLDHLQNTSGFLFR-NLKCLVLDEADRLLDIGFEEDVEQI 254 (543)
T ss_pred HhhCCCcceEEEeCCccchHHHHH-hh-ccccEEEeCCchHHhHhhcCCcchhh-ccceeEeecchhhhhcccHHHHHHH
Confidence 566667777777776554433333 22 3899999999999876433 332 347999999999954 44556677
Q ss_pred HHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHH
Q psy1544 700 LNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 779 (1331)
Q Consensus 700 l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~ 779 (1331)
+..+.+.++.+|+|||-- .. +.++.+-.+
T Consensus 255 i~~lpk~rqt~LFSAT~~-~k--------------------------------------------------V~~l~~~~L 283 (543)
T KOG0342|consen 255 IKILPKQRQTLLFSATQP-SK--------------------------------------------------VKDLARGAL 283 (543)
T ss_pred HHhccccceeeEeeCCCc-HH--------------------------------------------------HHHHHHHhh
Confidence 777767788899999931 00 111110000
Q ss_pred HHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhH
Q psy1544 780 LRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIE 859 (1331)
Q Consensus 780 lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 859 (1331)
+ . ....|.|. +. ... . +
T Consensus 284 -~-----------~-d~~~v~~~--------------------d~----~~~-----~---T------------------ 300 (543)
T KOG0342|consen 284 -K-----------R-DPVFVNVD--------------------DG----GER-----E---T------------------ 300 (543)
T ss_pred -c-----------C-CceEeecC--------------------CC----CCc-----c---h------------------
Confidence 0 0 00111110 00 000 0 0
Q ss_pred hhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Q psy1544 860 EKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGD 939 (1331)
Q Consensus 860 ~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~ 939 (1331)
..+...+..+.....++.+|..+|++.... .||||||....+..++...|+...+++..|||..++..|..
T Consensus 301 --------he~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 301 --------HERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred --------hhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 001111122233345678888888876654 79999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 940 LLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 940 ~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+..+|...+++ ||+||+++++|+|+++++.||-||+|-+|.+|++|+||++|-|-+-+ -+-|++.
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~--alL~l~p 436 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK--ALLLLAP 436 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce--EEEEeCh
Confidence 99999977776 79999999999999999999999999999999999999999775544 3334554
No 49
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.1e-25 Score=210.43 Aligned_cols=104 Identities=38% Similarity=0.640 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.|...|+.|++.|..++|++|+.+|++|+.+|++..+||||++|++||||++|++||.+|.|.|+++|..||.|||.||+
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~ 81 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAE 81 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHH
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
.||++||.||.+|..|+++|....
T Consensus 82 ~yn~~~S~i~~~A~~L~~~f~~~~ 105 (106)
T cd05525 82 KYYGRKSPIGRDVCRLRKAYYQAK 105 (106)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998753
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=2.9e-23 Score=265.08 Aligned_cols=335 Identities=18% Similarity=0.218 Sum_probs=215.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc-CC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA-PS 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~-p~ 631 (1331)
.+|++||.+++..++. +.+.|++.+||+|||+..+. ++..+.. . ....+|||+|+..| .|...+|.++. .+
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~-~~~~aL~l~PtraLa~q~~~~l~~l~~~~ 108 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-D-PRATALYLAPTKALAADQLRAVRELTLRG 108 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-C-CCcEEEEEcChHHHHHHHHHHHHHhccCC
Confidence 4799999999998774 88999999999999998654 4444433 2 23458999999777 67777888876 35
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc----cc--ccCccEEEEeCCcccCC-cchHHHHHHHHhc
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP----LA--KLHWKYMIIDEGHRMKN-HHCKLTHILNTFY 704 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~----l~--~~~~~~vIiDEaHrikn-~~sk~~~~l~~~~ 704 (1331)
+++.+|.|....... ..+ ....+|+|||++++....-. +. -.+.++|||||||++.+ ..+.+...+..+.
T Consensus 109 i~v~~~~Gdt~~~~r--~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 109 VRPATYDGDTPTEER--RWA-REHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred eEEEEEeCCCCHHHH--HHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 778888887543321 112 23579999999998642110 00 11468999999999965 2334333333321
Q ss_pred -------cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHH
Q psy1544 705 -------VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP 777 (1331)
Q Consensus 705 -------~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p 777 (1331)
.....+++|||.- +..++.. .+ +..++
T Consensus 186 ri~~~~g~~~q~i~~SATi~--n~~~~~~---~l--------------~g~~~--------------------------- 219 (742)
T TIGR03817 186 RLCARYGASPVFVLASATTA--DPAAAAS---RL--------------IGAPV--------------------------- 219 (742)
T ss_pred HHHHhcCCCCEEEEEecCCC--CHHHHHH---HH--------------cCCCe---------------------------
Confidence 2356899999942 2222211 00 00000
Q ss_pred HHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhh
Q psy1544 778 FLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQN 857 (1331)
Q Consensus 778 ~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 857 (1331)
.++.-+-++ . ..... ...+.++. .
T Consensus 220 -------------------~~i~~~~~~---------------------~---~~~~~-----------~~~~p~~~-~- 243 (742)
T TIGR03817 220 -------------------VAVTEDGSP---------------------R---GARTV-----------ALWEPPLT-E- 243 (742)
T ss_pred -------------------EEECCCCCC---------------------c---CceEE-----------EEecCCcc-c-
Confidence 000000000 0 00000 00000000 0
Q ss_pred hHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--------CCeEEEEc
Q psy1544 858 IEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--------GFKYMRLD 929 (1331)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--------g~~~~~id 929 (1331)
..+..+.. ........+..+|..++ ..+.++||||+.+..++.|...|... +.++..+|
T Consensus 244 -------~~~~~~~~--~r~~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 244 -------LTGENGAP--VRRSASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred -------cccccccc--cccchHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 00000000 00000123444444444 35789999999999999999988753 66788999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 930 GTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 930 G~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
|++++++|..+.++|.+ +.+. +|+||+++++|||+.++|+||+||.|-+...|+||+||++|.|+.. .++.++..
T Consensus 311 gg~~~~eR~~ie~~f~~--G~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRD--GELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHc--CCce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCC
Confidence 99999999999999985 4454 4899999999999999999999999999999999999999999765 34455666
Q ss_pred CCHHHHHHH
Q psy1544 1010 NSVEERILA 1018 (1331)
Q Consensus 1010 ~TiEE~I~~ 1018 (1331)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 777776544
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=4.9e-23 Score=264.94 Aligned_cols=309 Identities=17% Similarity=0.199 Sum_probs=209.8
Q ss_pred ccCCccHHHHHHHHHHHHHhcCC--CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNN--LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~--~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
++.++.++|..++..++.-+..+ .+.+++.+||+|||.+++..+...+..+ ..++|+||+..| .|+...|.+++
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~Q~~~~f~~~~ 524 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQQHFETFKERF 524 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHHHHHHHHHHHh
Confidence 35579999999999998755443 4679999999999998776555444332 459999999777 88999999887
Q ss_pred CC--CcEEEecCChh--HHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc
Q psy1544 630 PS--VNVVAYKGSPH--LRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV 705 (1331)
Q Consensus 630 p~--~~v~~~~g~~~--~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~ 705 (1331)
.. +++.+++|... .++.....+..+..+|||+|+..+.++. .+ .+..+|||||+|++.. .....+..+..
T Consensus 525 ~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEahrfgv---~~~~~L~~~~~ 598 (926)
T TIGR00580 525 ANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQRFGV---KQKEKLKELRT 598 (926)
T ss_pred ccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCC-Cc--ccCCEEEeecccccch---hHHHHHHhcCC
Confidence 64 45555655432 3333444455677999999997664332 22 2568999999999743 23345555545
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
..++|+|||||+...+.. ++..+..+...
T Consensus 599 ~~~vL~~SATpiprtl~~--~l~g~~d~s~I------------------------------------------------- 627 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHM--SMSGIRDLSII------------------------------------------------- 627 (926)
T ss_pred CCCEEEEecCCCHHHHHH--HHhcCCCcEEE-------------------------------------------------
Confidence 678999999997533211 00000000000
Q ss_pred HHhhhCCCceEE---EEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 786 EVESQLPDKVEY---IIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 786 ~v~~~LP~k~e~---~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
..|+.... ...+..
T Consensus 628 ----~~~p~~R~~V~t~v~~~----------------------------------------------------------- 644 (926)
T TIGR00580 628 ----ATPPEDRLPVRTFVMEY----------------------------------------------------------- 644 (926)
T ss_pred ----ecCCCCccceEEEEEec-----------------------------------------------------------
Confidence 00000000 000000
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAEDRGDL 940 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~eR~~~ 940 (1331)
+. ..+...++.. ...|.+|+|||+.+..++.+...|... ++++..+||.|+..+|..+
T Consensus 645 ------------------~~-~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~i 704 (926)
T TIGR00580 645 ------------------DP-ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEV 704 (926)
T ss_pred ------------------CH-HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Confidence 00 0001111122 234679999999999999999999875 8899999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCC-CCccccccccccccccCCCCceEEEEEeeC
Q psy1544 941 LKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 941 i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~-wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+.+|.++. +. +||||.+.++|||++++++||+++.+ +...++.|++||++|.|... ++|.|+..
T Consensus 705 m~~F~~Gk--~~-ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 705 MLEFYKGE--FQ-VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred HHHHHcCC--CC-EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 99999644 44 59999999999999999999999986 46678999999999988654 55555544
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=9.7e-23 Score=257.75 Aligned_cols=305 Identities=16% Similarity=0.257 Sum_probs=205.0
Q ss_pred CCccHHHHHHHHHHHHHhcCC--CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNN--LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~--~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p- 630 (1331)
.+|.++|.+++..++.-.... .+.+|..+||+|||++++..+...+.. +..+||++|+..| .||...|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 479999999999998765333 367999999999999887655555443 3459999999777 899999999987
Q ss_pred -CCcEEEecCChhH--HHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc--
Q psy1544 631 -SVNVVAYKGSPHL--RKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV-- 705 (1331)
Q Consensus 631 -~~~v~~~~g~~~~--r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~-- 705 (1331)
++++.+++|+... +......+..+..+|+|+|+..+..... + .+.++|||||+|++.-.. ...+.....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~-~--~~l~lvVIDEaH~fg~~q---r~~l~~~~~~~ 384 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE-F--KRLALVIIDEQHRFGVEQ---RKKLREKGQGG 384 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc-c--cccceEEEechhhccHHH---HHHHHHhcccC
Confidence 4778888886433 3334445566788999999998864322 2 356899999999974322 222322222
Q ss_pred -CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 -APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 784 (1331)
Q Consensus 706 -~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k 784 (1331)
..+.|++||||+...+. +..+ +...
T Consensus 385 ~~~~~l~~SATp~prtl~----l~~~------~~l~-------------------------------------------- 410 (630)
T TIGR00643 385 FTPHVLVMSATPIPRTLA----LTVY------GDLD-------------------------------------------- 410 (630)
T ss_pred CCCCEEEEeCCCCcHHHH----HHhc------CCcc--------------------------------------------
Confidence 56789999999753221 1000 0000
Q ss_pred HHHhhhCCCce--EEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 785 KEVESQLPDKV--EYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 785 ~~v~~~LP~k~--e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
..+...+|... .....+.
T Consensus 411 ~~~i~~~p~~r~~i~~~~~~------------------------------------------------------------ 430 (630)
T TIGR00643 411 TSIIDELPPGRKPITTVLIK------------------------------------------------------------ 430 (630)
T ss_pred eeeeccCCCCCCceEEEEeC------------------------------------------------------------
Confidence 00000111100 0000000
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccH--------HHHHHHHHHHHh--cCCeEEEEcCCC
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMT--------QLMNILEDYFSY--RGFKYMRLDGTT 932 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~--------~~ld~L~~~L~~--~g~~~~~idG~~ 932 (1331)
......+...+.+....|++++|||... ..+..+...|.. .++.+..+||++
T Consensus 431 ------------------~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 431 ------------------HDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred ------------------cchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 0001122223333345677888888764 234455555553 478999999999
Q ss_pred CHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-CccccccccccccccCCCCceEE
Q psy1544 933 KAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 933 ~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w-Np~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+.++|..+++.|.++. +. +||||.+.++|||++++++||++|.+. +...+.|++||++|.|....+.+
T Consensus 493 ~~~eR~~i~~~F~~g~--~~-ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 493 KSDEKEAVMEEFREGE--VD-ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred CHHHHHHHHHHHHcCC--CC-EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 9999999999999644 34 589999999999999999999999985 67889999999999987655443
No 53
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.1e-24 Score=211.96 Aligned_cols=110 Identities=35% Similarity=0.650 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
.+.|..|++.|+++++++||+++.+|..+|+++.+||||++|++||||+||++||+++.|.|+++|.+||.|||+||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1299 NEELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
|++||.+|.+|..|+++|++.++++..+++
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~~~ 113 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSGGE 113 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999988764
No 54
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.1e-24 Score=208.56 Aligned_cols=100 Identities=39% Similarity=0.726 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
++.|..|++.|++++|++||+++++|..+|+++.+||||++|++||||++|++||+++.|.|+.+|..||.|||.||++|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy1544 1299 NEELSLIHEDSVVLESVFTK 1318 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~ 1318 (1331)
|++||.||.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999975
No 55
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.6e-24 Score=208.73 Aligned_cols=103 Identities=40% Similarity=0.698 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
++.|..|++.|++++|+.||+++++|+.+|+++.+||||++|++||||+||++||.++.|.|+++|..||.|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Q psy1544 1299 NEELSLIHEDSVVLESVFTKARQ 1321 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~~~~ 1321 (1331)
|++||.||.+|..|+++|.+.+.
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988764
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=1e-22 Score=259.12 Aligned_cols=307 Identities=17% Similarity=0.250 Sum_probs=205.6
Q ss_pred cCCccHHHHHHHHHHHHHhcCC--CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNN--LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP 630 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~--~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p 630 (1331)
..+|.++|.+++..+..-...+ .+.||..+||+|||++++..+...+.. +..+||++|+..| .|+...|.+|++
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3479999999999888754332 367999999999999987666554433 3459999999777 899999999986
Q ss_pred C--CcEEEecCChhH--HHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 631 S--VNVVAYKGSPHL--RKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~--~~v~~~~g~~~~--r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
. +.+.+++|+... ++........+..+|+|+|+..+.... .+ .+.++|||||+|++.- .....+......
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~ 409 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFGV---EQRLALREKGEN 409 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhhH---HHHHHHHhcCCC
Confidence 4 677888887543 344444556678999999998885432 12 2568999999999832 223334433345
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.+.|+|||||+...+. +..+ +.. . . .
T Consensus 410 ~~iL~~SATp~prtl~----~~~~------g~~---------------~-~----------------------------s 435 (681)
T PRK10917 410 PHVLVMTATPIPRTLA----MTAY------GDL---------------D-V----------------------------S 435 (681)
T ss_pred CCEEEEeCCCCHHHHH----HHHc------CCC---------------c-e----------------------------E
Confidence 7889999999642211 0000 000 0 0 0
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhcc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHV 866 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 866 (1331)
+...+|.... |
T Consensus 436 ~i~~~p~~r~-------------------------------------------------------~-------------- 446 (681)
T PRK10917 436 VIDELPPGRK-------------------------------------------------------P-------------- 446 (681)
T ss_pred EEecCCCCCC-------------------------------------------------------C--------------
Confidence 0000111000 0
Q ss_pred CCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHH--------HHHHHHHHHHhc--CCeEEEEcCCCCHHH
Q psy1544 867 GGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQ--------LMNILEDYFSYR--GFKYMRLDGTTKAED 936 (1331)
Q Consensus 867 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~--------~ld~L~~~L~~~--g~~~~~idG~~~~~e 936 (1331)
+ ...+....+...+...+.+....|++++|||...+ .+..+...|... ++++..+||+++..+
T Consensus 447 ----i---~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~e 519 (681)
T PRK10917 447 ----I---TTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAE 519 (681)
T ss_pred ----c---EEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHH
Confidence 0 00000011112222333333467889999997542 344555666554 578999999999999
Q ss_pred HHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-CccccccccccccccCCCCceE
Q psy1544 937 RGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVR 1002 (1331)
Q Consensus 937 R~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w-Np~~~~QaiGRa~RiGQ~k~V~ 1002 (1331)
|..++++|.++ .+. +||||.+.++|+|++++++||+++++. ....+.|++||++|.|....|.
T Consensus 520 R~~i~~~F~~g--~~~-ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 520 KDAVMAAFKAG--EID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHHHHcC--CCC-EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 99999999954 344 589999999999999999999999975 5788999999999998755443
No 57
>KOG0345|consensus
Probab=99.91 E-value=8e-23 Score=230.70 Aligned_cols=318 Identities=18% Similarity=0.266 Sum_probs=227.5
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC-CC--C--cEEEEeCCccHH----HHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK-VN--G--PFLIIVPLSTLS----NWSLE 624 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~-~~--~--p~LIV~P~sll~----qW~~E 624 (1331)
..+..|-|..++-.++. +..+..-..||+|||+..+.-+...+.... .. + -.|||+|+..|. +....
T Consensus 26 F~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~ 101 (567)
T KOG0345|consen 26 FEKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQP 101 (567)
T ss_pred CcccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHH
Confidence 45789999999988885 888888899999999997766665552221 11 1 369999998773 34455
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC----cccccCccEEEEeCCcccCCc--chHHHH
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG----PLAKLHWKYMIIDEGHRMKNH--HCKLTH 698 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~----~l~~~~~~~vIiDEaHrikn~--~sk~~~ 698 (1331)
|..+++++++.++.|+......+.. +...+.+|+|.|++.+..-.. .++.-...++|+|||+|+... ...+..
T Consensus 102 F~~~l~~l~~~l~vGG~~v~~Di~~-fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 102 FLEHLPNLNCELLVGGRSVEEDIKT-FKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHHhhhccceEEEecCccHHHHHHH-HHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 6666789999999999766655443 456778999999998865432 345446789999999999654 456667
Q ss_pred HHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 699 ILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 699 ~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
+|..+.+.++.=|+|||- +.-.+ .|..+
T Consensus 181 ILs~LPKQRRTGLFSATq--~~~v~--dL~ra------------------------------------------------ 208 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQ--TQEVE--DLARA------------------------------------------------ 208 (567)
T ss_pred HHHhcccccccccccchh--hHHHH--HHHHh------------------------------------------------
Confidence 787776677778899993 21110 00000
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
.|-..+...|... .... -
T Consensus 209 -----------GLRNpv~V~V~~k----------------------------~~~~----------------t------- 226 (567)
T KOG0345|consen 209 -----------GLRNPVRVSVKEK----------------------------SKSA----------------T------- 226 (567)
T ss_pred -----------hccCceeeeeccc----------------------------cccc----------------C-------
Confidence 0101111111000 0000 0
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAED 936 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~e 936 (1331)
.+........+...-|+..|..+|.. ....|+|||..+....++....|... ++.++.+||.+++..
T Consensus 227 ---------PS~L~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 227 ---------PSSLALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred ---------chhhcceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 00011112234556789999999976 34469999999999999988888754 788999999999999
Q ss_pred HHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 937 RGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 937 R~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
|..++..|.....+ +|+||+++++|||++++|.||.||||-+|..+.||.||++|.|..-...||
T Consensus 296 R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 296 RAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred HHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 99999999864444 689999999999999999999999999999999999999999977665443
No 58
>KOG0340|consensus
Probab=99.91 E-value=3.2e-23 Score=226.60 Aligned_cols=338 Identities=18% Similarity=0.263 Sum_probs=237.1
Q ss_pred hhhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcCCCCcEEEEeCCccH-
Q psy1544 541 VHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKKVNGPFLIIVPLSTL- 618 (1331)
Q Consensus 541 ~~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~~~~p~LIV~P~sll- 618 (1331)
+..++.+|...+.-.+..|.|..+|..++. |.+||-+.-||+|||.. ++.++..|.+ .+..--.||+.|+.-+
T Consensus 14 l~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLse-dP~giFalvlTPTrELA 88 (442)
T KOG0340|consen 14 LSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSE-DPYGIFALVLTPTRELA 88 (442)
T ss_pred ccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhcc-CCCcceEEEecchHHHH
Confidence 445667776666666889999999999996 99999999999999987 4555555543 3444457999999877
Q ss_pred HHHHHHHHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc------ccccCccEEEEeCCcccC
Q psy1544 619 SNWSLEFERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP------LAKLHWKYMIIDEGHRMK 690 (1331)
Q Consensus 619 ~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~------l~~~~~~~vIiDEaHrik 690 (1331)
.|-.+.|.-... ++++.++.|..+. ..+......+.+||++|++.+...... +...+..++|+|||.++-
T Consensus 89 ~QiaEQF~alGk~l~lK~~vivGG~d~--i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL 166 (442)
T KOG0340|consen 89 LQIAEQFIALGKLLNLKVSVIVGGTDM--IMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVL 166 (442)
T ss_pred HHHHHHHHHhcccccceEEEEEccHHH--hhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhh
Confidence 677777765543 5677777777543 234445567899999999998764321 112256899999999997
Q ss_pred Ccch--HHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHH
Q psy1544 691 NHHC--KLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILII 768 (1331)
Q Consensus 691 n~~s--k~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~ 768 (1331)
+... .+.-....+...+..++||||- .+++.++ |..+....
T Consensus 167 ~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~--------------- 209 (442)
T KOG0340|consen 167 AGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQL---------------------FGCPITKS--------------- 209 (442)
T ss_pred ccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHh---------------------hcCCcccc---------------
Confidence 6542 2222233333456789999993 1211111 11111000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHh
Q psy1544 769 RRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKL 848 (1331)
Q Consensus 769 ~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 848 (1331)
.-+.+.+ ..+....
T Consensus 210 --------------------------~a~~~e~---------------------------~~~vstv------------- 223 (442)
T KOG0340|consen 210 --------------------------IAFELEV---------------------------IDGVSTV------------- 223 (442)
T ss_pred --------------------------cceEEec---------------------------cCCCCch-------------
Confidence 0000000 0000000
Q ss_pred cCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhc-CCCeeEEEeccHHHHHHHHHHHHhcCCeEEE
Q psy1544 849 CNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKS-TGHRVLLFCQMTQLMNILEDYFSYRGFKYMR 927 (1331)
Q Consensus 849 ~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~-~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~ 927 (1331)
.......-++...+|-.+|..+|....+ ....++||++.+.++.+|...|...++.+..
T Consensus 224 --------------------etL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~ 283 (442)
T KOG0340|consen 224 --------------------ETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVS 283 (442)
T ss_pred --------------------hhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeee
Confidence 0011122234557788999999998877 5568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEe
Q psy1544 928 LDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLM 1007 (1331)
Q Consensus 928 idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli 1007 (1331)
+||.|++.+|...+.+|+++. .+ +||+|+++++|||++.++.||+||.|-.|..|++|+||..|.|..-. -+-++
T Consensus 284 lHs~m~Q~eR~~aLsrFrs~~--~~-iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~--aiSiv 358 (442)
T KOG0340|consen 284 LHSQMPQKERLAALSRFRSNA--AR-ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM--AISIV 358 (442)
T ss_pred hhhcchHHHHHHHHHHHhhcC--cc-EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc--eEEEe
Confidence 999999999999999999543 33 59999999999999999999999999999999999999999997664 22345
Q ss_pred eCCCHH
Q psy1544 1008 TVNSVE 1013 (1331)
Q Consensus 1008 ~~~TiE 1013 (1331)
+.-.||
T Consensus 359 t~rDv~ 364 (442)
T KOG0340|consen 359 TQRDVE 364 (442)
T ss_pred chhhHH
Confidence 554443
No 59
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=1.8e-24 Score=206.81 Aligned_cols=101 Identities=41% Similarity=0.709 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
++.|+.|++.|.+++|..||.++.+|+.+|+++.+||||++|++||||+||++||.++.|.|+++|.+||.|||.||+.|
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy1544 1299 NEELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~~ 1319 (1331)
|++||.||.+|..|+++|.+.
T Consensus 82 N~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999864
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=1.5e-22 Score=265.86 Aligned_cols=309 Identities=17% Similarity=0.218 Sum_probs=206.5
Q ss_pred cCCccHHHHHHHHHHHHHhcC--CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNN--NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP 630 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~--~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p 630 (1331)
...+.+.|.+++.-++.-... ..+.+++.+||+|||.+++..+...... ...+|||||+..| .|+...|.+++.
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q~~~~f~~~~~ 674 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQHYDNFRDRFA 674 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 447999999999988875433 2567999999999999876544433332 3459999999877 788888887665
Q ss_pred C--CcEEEecCChh--HHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 631 S--VNVVAYKGSPH--LRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~--~~v~~~~g~~~--~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
. +.+.++.|... .+.........+..+|+|+|++.+.++. .-.++++|||||+|++.. .....+..+...
T Consensus 675 ~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~ 748 (1147)
T PRK10689 675 NWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV---KWKDLGLLIVDEEHRFGV---RHKERIKAMRAD 748 (1147)
T ss_pred cCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCC---CHhhCCEEEEechhhcch---hHHHHHHhcCCC
Confidence 3 45555555432 2333333344567899999998775432 223679999999999833 223445555556
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.++|+|||||++..+.- ++..+..+...
T Consensus 749 ~qvLl~SATpiprtl~l--~~~gl~d~~~I-------------------------------------------------- 776 (1147)
T PRK10689 749 VDILTLTATPIPRTLNM--AMSGMRDLSII-------------------------------------------------- 776 (1147)
T ss_pred CcEEEEcCCCCHHHHHH--HHhhCCCcEEE--------------------------------------------------
Confidence 78999999997543211 00000000000
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhcc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHV 866 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 866 (1331)
..|+.....+ ...+.
T Consensus 777 ---~~~p~~r~~v----------------------------------------------~~~~~---------------- 791 (1147)
T PRK10689 777 ---ATPPARRLAV----------------------------------------------KTFVR---------------- 791 (1147)
T ss_pred ---ecCCCCCCCc----------------------------------------------eEEEE----------------
Confidence 0000000000 00000
Q ss_pred CCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHh
Q psy1544 867 GGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 867 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~eR~~~i~~F 944 (1331)
. .........++.++. .|.+|+|||+.+..++.+...|... ++++..+||+|+..+|..++.+|
T Consensus 792 ------------~-~~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~F 857 (1147)
T PRK10689 792 ------------E-YDSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 (1147)
T ss_pred ------------e-cCcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 0 000001122233332 3568999999999999999999877 78999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCC-CCccccccccccccccCCCCceEEEEEe
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLM 1007 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~-wNp~~~~QaiGRa~RiGQ~k~V~V~rli 1007 (1331)
.++. +. +||||+++++|||++++++||+.+++ |+..++.|++||++|.|.+. ++|.+.
T Consensus 858 r~Gk--~~-VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 858 HHQR--FN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred HhcC--CC-EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 9544 44 58999999999999999999988775 68888999999999998765 444344
No 61
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=3.9e-24 Score=204.70 Aligned_cols=99 Identities=30% Similarity=0.640 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcC
Q psy1544 1221 TLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNE 1300 (1331)
Q Consensus 1221 ~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~ 1300 (1331)
-+..|++.|++++|+.||.++++|..+|++..+||||++|++||||+||++||+++.|.++.+|..||.|||+||+.||+
T Consensus 4 ~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 4 PLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred hHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy1544 1301 ELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1301 ~~S~i~~~A~~L~~~f~~~ 1319 (1331)
+||.+|.+|..|+++|.+.
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 62
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=4.3e-24 Score=205.52 Aligned_cols=103 Identities=41% Similarity=0.684 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
|++.|+.|++.|++++|.+||+++++|..+|++..+||||++|++||||++|++||+.|.|.|+.+|..||.|||+||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHH
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
||++||.+|.+|..|++.|.+++
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763
No 63
>KOG0350|consensus
Probab=99.90 E-value=9.9e-23 Score=231.13 Aligned_cols=362 Identities=17% Similarity=0.215 Sum_probs=220.0
Q ss_pred CCccHHHHHHHHHHHHHhcC-----CCceEEecCCCCCHHHH-HHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNN-----NLNGILADEMGLGKTIQ-TIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~-----~~~gILADemGlGKTi~-ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k 627 (1331)
..++|.|...+.|++.-.+. .+...++.+||+|||+. +|-++..|..+.-.+-++|||+|+..| .|....|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 57999999999999876552 33457899999999999 566665554443444579999999877 889999999
Q ss_pred HcCC--CcEEEecCChhHHHHHHHHh---hccCccEEEeeHHHHHhccCcccc---cCccEEEEeCCcccCCcchHHHH-
Q psy1544 628 WAPS--VNVVAYKGSPHLRKTLQAQM---KASKFNVLLTTYEYVIKDKGPLAK---LHWKYMIIDEGHRMKNHHCKLTH- 698 (1331)
Q Consensus 628 ~~p~--~~v~~~~g~~~~r~~~~~~~---~~~~~~VvItTye~l~~~~~~l~~---~~~~~vIiDEaHrikn~~sk~~~- 698 (1331)
|+++ +.|+...|....+....... .....||+|+|++.+..+...-.. -+..++|||||+||.+...+-|-
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLD 317 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHH
Confidence 9975 55666777666655544433 234569999999999988664333 36789999999999776554332
Q ss_pred HHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 699 ILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 699 ~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
.+..+.+...++.+++ +++.+..-..|..+... ...+..+ ...|.+++.+-
T Consensus 318 ~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~~~------------------~~~l~kL~~sa 368 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLGKL------------------YPPLWKLVFSA 368 (620)
T ss_pred HHHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcCCc------------------CchhHhhhcch
Confidence 2222222222222221 11111110011100000 0000000 00011111111
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
.|.+ .|.+ +..| -.++|-++...
T Consensus 369 tLsq--------dP~K-----------------------------------------------l~~l--~l~~Prl~~v~ 391 (620)
T KOG0350|consen 369 TLSQ--------DPSK-----------------------------------------------LKDL--TLHIPRLFHVS 391 (620)
T ss_pred hhhc--------ChHH-----------------------------------------------Hhhh--hcCCCceEEee
Confidence 1111 1100 0000 01222221100
Q ss_pred HhhhhhccC-CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHH----hcCCeEEEEcCCCC
Q psy1544 859 EEKFSDHVG-GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFS----YRGFKYMRLDGTTK 933 (1331)
Q Consensus 859 ~~~~~~~~~-~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~----~~g~~~~~idG~~~ 933 (1331)
... .-.+. ...+....-....--|--.+..++.. ....++|+|+.+.+....|...|. ...+++..+.|+.+
T Consensus 392 ~~~-~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 392 KPL-IGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ccc-ceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 000 00000 00000000001111244455555654 345699999999999888888877 33677778999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
...|.+.+.+|+.+ ++.| |||++++++|+|+-+++.||+||+|-+-..|++|+||+.|.||.- ++|.++...
T Consensus 469 ~k~r~k~l~~f~~g--~i~v-LIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKG--DINV-LICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred HHHHHHHHHHHhcC--CceE-EEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 99999999999964 4554 899999999999999999999999999999999999999999866 666666654
No 64
>KOG0328|consensus
Probab=99.90 E-value=6.6e-23 Score=217.29 Aligned_cols=318 Identities=18% Similarity=0.261 Sum_probs=226.6
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--C
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--S 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 631 (1331)
+....|..++..++. +.++|.....|+|||.+ +|+++..+--.. ...-+||+.|+..| .|...-+...+. +
T Consensus 49 kPS~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~-r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISV-RETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CchHHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeeccccc-ceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 344569999988885 88999999999999987 666665442222 22348999999888 555555555554 3
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccC--CcchHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMK--NHHCKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrik--n~~sk~~~~l~~~~~~~ 707 (1331)
+.+....|..+....+... .-+.+||..|++.+.+- +..|.--...++|+|||+.|. +...+++.+++.+.+..
T Consensus 124 vq~hacigg~n~gedikkl--d~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~ 201 (400)
T KOG0328|consen 124 VQCHACIGGKNLGEDIKKL--DYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGA 201 (400)
T ss_pred ceEEEEecCCccchhhhhh--cccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCc
Confidence 5555666665544333322 24678999999988763 455666678999999999994 45667888888877788
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
..+++|||- ..|+..+.++.
T Consensus 202 Qvv~~SATl----p~eilemt~kf-------------------------------------------------------- 221 (400)
T KOG0328|consen 202 QVVLVSATL----PHEILEMTEKF-------------------------------------------------------- 221 (400)
T ss_pred eEEEEeccC----cHHHHHHHHHh--------------------------------------------------------
Confidence 999999994 12222222222
Q ss_pred hhhCCCceEEEEEc-CCCHHHH-HHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 788 ESQLPDKVEYIIKC-DMSGLQK-VLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~-~ls~~q~-~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
.++.+...++- +++..-. .+|-.
T Consensus 222 ---mtdpvrilvkrdeltlEgIKqf~v~---------------------------------------------------- 246 (400)
T KOG0328|consen 222 ---MTDPVRILVKRDELTLEGIKQFFVA---------------------------------------------------- 246 (400)
T ss_pred ---cCCceeEEEecCCCchhhhhhheee----------------------------------------------------
Confidence 22222222221 1111100 00000
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
.-...-|+..|..+...+--. ..+|||+.+...++|.+-++...+.+..+||.|.+++|.+++++|+
T Consensus 247 -----------ve~EewKfdtLcdLYd~LtIt--QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR 313 (400)
T KOG0328|consen 247 -----------VEKEEWKFDTLCDLYDTLTIT--QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR 313 (400)
T ss_pred -----------echhhhhHhHHHHHhhhhehh--eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh
Confidence 001123566666665544333 6899999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 946 APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 946 ~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
.+.+. +|++|++-++|+|+|.++.||+||.|-|...|++||||.+|+|.+- .++.|+..+.++
T Consensus 314 sg~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 314 SGKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred cCCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 76554 5999999999999999999999999999999999999999999655 667788776443
No 65
>KOG0343|consensus
Probab=99.90 E-value=1.2e-22 Score=232.16 Aligned_cols=332 Identities=19% Similarity=0.242 Sum_probs=239.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHH-HHHHHHHHHhcCC---CCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQT-IALITYLMEKKKV---NGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~a-i~li~~l~~~~~~---~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
..+.+.|..+|-..+. |...|-|.-||+|||+.. +.++..|+..+-. +--+|||.|+..| .|-..-+.+.+
T Consensus 90 v~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred ccHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 3688899999988885 888889999999999984 4555566554321 1138999999887 67666666654
Q ss_pred C--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 630 P--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 630 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
. ++....+.|+.+.... ..+....+|+|||++.+..+. ..|......++|+|||+||...+ ..+..++..
T Consensus 166 k~h~fSaGLiiGG~~~k~E---~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~ 242 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE---LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIEN 242 (758)
T ss_pred hccccccceeecCchhHHH---HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHh
Confidence 2 4555555666554433 234567899999999998764 34555678999999999996544 456677777
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
+...+..||+|||+..+ ..+|.- |+
T Consensus 243 lP~~RQTLLFSATqt~s-vkdLaR-Ls----------------------------------------------------- 267 (758)
T KOG0343|consen 243 LPKKRQTLLFSATQTKS-VKDLAR-LS----------------------------------------------------- 267 (758)
T ss_pred CChhheeeeeecccchh-HHHHHH-hh-----------------------------------------------------
Confidence 77788999999998432 222221 11
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
|-+....-|... .. .+. -.. |
T Consensus 268 --------L~dP~~vsvhe~---------------a~------------~at----P~~---L----------------- 288 (758)
T KOG0343|consen 268 --------LKDPVYVSVHEN---------------AV------------AAT----PSN---L----------------- 288 (758)
T ss_pred --------cCCCcEEEEecc---------------cc------------ccC----hhh---h-----------------
Confidence 111111111100 00 000 000 0
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAEDRGDL 940 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~eR~~~ 940 (1331)
.....++....|+.+|-.+|...... |.|||..+...+.++...|... |+....+||.|++..|..+
T Consensus 289 ---------~Q~y~~v~l~~Ki~~L~sFI~shlk~--K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev 357 (758)
T KOG0343|consen 289 ---------QQSYVIVPLEDKIDMLWSFIKSHLKK--KSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEV 357 (758)
T ss_pred ---------hheEEEEehhhHHHHHHHHHHhcccc--ceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHH
Confidence 11112345567899999998876544 8999999999999999988765 9999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHH
Q psy1544 941 LKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAA 1020 (1331)
Q Consensus 941 i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~ 1020 (1331)
..+|.. ...++|+||+++++|||++.+|.||-||.|-+...|++|+||+.|.+..-+..++- + -+-+|.++.++
T Consensus 358 ~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L--~-psEeE~~l~~L 431 (758)
T KOG0343|consen 358 YKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML--T-PSEEEAMLKKL 431 (758)
T ss_pred HHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE--c-chhHHHHHHHH
Confidence 999984 23568999999999999999999999999999999999999999999877766542 2 33468888777
Q ss_pred HHHH
Q psy1544 1021 RYKL 1024 (1331)
Q Consensus 1021 ~~K~ 1024 (1331)
++|.
T Consensus 432 q~k~ 435 (758)
T KOG0343|consen 432 QKKK 435 (758)
T ss_pred HHcC
Confidence 7764
No 66
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.89 E-value=6.8e-22 Score=258.66 Aligned_cols=355 Identities=15% Similarity=0.198 Sum_probs=207.1
Q ss_pred CCccHHHHHHHHHHHHHhcC-CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCCC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNN-NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPSV 632 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~-~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~ 632 (1331)
..||+||.++|..+...+.+ ..++||++.||+|||+++++++..++..... +++||||+.. |+.||..+|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~-~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRF-RRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCcc-CeEEEEecHHHHHHHHHHHHHhccccc
Confidence 57999999999988876643 4678999999999999999999888766543 4699999985 5599999999875322
Q ss_pred c--EE-EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC-------cccccCccEEEEeCCcccCCc----------
Q psy1544 633 N--VV-AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG-------PLAKLHWKYMIIDEGHRMKNH---------- 692 (1331)
Q Consensus 633 ~--v~-~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~-------~l~~~~~~~vIiDEaHrikn~---------- 692 (1331)
. +. ++ +... +..........|+|+|+..+.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~-~i~~----L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 491 DQTFASIY-DIKG----LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred ccchhhhh-chhh----hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 1 11 11 1111 1111223457899999999865421 123347899999999996311
Q ss_pred -------chHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHH
Q psy1544 693 -------HCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETI 765 (1331)
Q Consensus 693 -------~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~ 765 (1331)
.++..+++ .++. ..+|+|||||..+. + ..|..|+... +
T Consensus 566 ~~~~~~~~~~yr~iL-~yFd-A~~IGLTATP~r~t----~------------------~~FG~pv~~Y------s----- 610 (1123)
T PRK11448 566 FRDQLDYVSKYRRVL-DYFD-AVKIGLTATPALHT----T------------------EIFGEPVYTY------S----- 610 (1123)
T ss_pred cchhhhHHHHHHHHH-hhcC-ccEEEEecCCccch----h------------------HHhCCeeEEe------e-----
Confidence 12222333 3333 57899999997432 1 1111111000 0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhhCCCceEEE-EE---cCCC-HHHHHHHHHHHhhhhhcccCcccccCCCcchHHHH
Q psy1544 766 LIIRRLHKVL-RPFLLRRLKKEVESQLPDKVEYI-IK---CDMS-GLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALM 839 (1331)
Q Consensus 766 ~~~~rL~~~L-~p~~lRR~k~~v~~~LP~k~e~~-v~---~~ls-~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 839 (1331)
+.+.+ ..+++. .-|+..... +. +... ..+...|+....... .... . ..+.
T Consensus 611 -----l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~--~~~l------~---d~~~ 666 (1123)
T PRK11448 611 -----YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEID--LATL------E---DEVD 666 (1123)
T ss_pred -----HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhh--hccC------c---HHHh
Confidence 00000 011100 002221111 00 0000 011111211100000 0000 0 0000
Q ss_pred HHHHHH-HHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHH-HHhhhhhhc-CCCeeEEEeccHHHHHHHHH
Q psy1544 840 NTIVQL-RKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELL-DRILPKLKS-TGHRVLLFCQMTQLMNILED 916 (1331)
Q Consensus 840 ~~l~~L-rk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L-~~lL~~l~~-~g~KVLIFsq~~~~ld~L~~ 916 (1331)
-....+ +.+.+ ......+ ..++..+.. .+.|+||||....+++.|.+
T Consensus 667 ~~~~~~~~~vi~------------------------------~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 667 FEVEDFNRRVIT------------------------------ESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred hhHHHHHHHHhh------------------------------HHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHH
Confidence 000000 00000 0011111 122222211 23699999999999998888
Q ss_pred HHHhc------CC---eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccc
Q psy1544 917 YFSYR------GF---KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 987 (1331)
Q Consensus 917 ~L~~~------g~---~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~Q 987 (1331)
.|... ++ .+..++|+++ ++..++++|.+ +....+|+|++.+++|+|++.+++||++++.-|...|.|
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Q 792 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQ 792 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHH
Confidence 77642 22 4567999986 67889999985 334357899999999999999999999999999999999
Q ss_pred ccccccccCC---CCceEEEEEee
Q psy1544 988 AQDRAHRIGQ---KNEVRVLRLMT 1008 (1331)
Q Consensus 988 aiGRa~RiGQ---~k~V~V~rli~ 1008 (1331)
++||+.|..- |....||.++-
T Consensus 793 mIGRgtR~~~~~~K~~f~I~D~vg 816 (1123)
T PRK11448 793 MLGRATRLCPEIGKTHFRIFDAVD 816 (1123)
T ss_pred HHhhhccCCccCCCceEEEEehHH
Confidence 9999999865 55578887653
No 67
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=4.6e-22 Score=258.97 Aligned_cols=327 Identities=19% Similarity=0.191 Sum_probs=202.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhc-----CCCCcEEEEeCCccH-HHHHHH---
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKK-----KVNGPFLIIVPLSTL-SNWSLE--- 624 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~-----~~~~p~LIV~P~sll-~qW~~E--- 624 (1331)
+.|+|+|.+++..++ .+.++|++.+||+|||++++. ++..+.... .....+|+|+|+..| .++...
T Consensus 31 ~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 469999999998776 478999999999999998654 444444321 112348999999666 555543
Q ss_pred ----HHHHc-------CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--ccc--ccCccEEEEeCCccc
Q psy1544 625 ----FERWA-------PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--PLA--KLHWKYMIIDEGHRM 689 (1331)
Q Consensus 625 ----~~k~~-------p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~l~--~~~~~~vIiDEaHri 689 (1331)
+..++ +++.+.+.+|........ .......+|+|||++.+..... .+. -.+.++|||||+|.+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~--~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ--KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH--HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 33333 356778888875433221 1233468999999998853221 110 125689999999999
Q ss_pred CCcc--hHHHHHH---HHhc-cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHH
Q psy1544 690 KNHH--CKLTHIL---NTFY-VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEE 763 (1331)
Q Consensus 690 kn~~--sk~~~~l---~~~~-~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~ 763 (1331)
.+.. ..+...+ ..+. ...++|+||||.- ++.++.. |+...... .......+
T Consensus 185 ~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~---~L~~~~~~--------------~~~r~~~i---- 241 (876)
T PRK13767 185 AENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAK---FLVGYEDD--------------GEPRDCEI---- 241 (876)
T ss_pred ccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHH---HhcCcccc--------------CCCCceEE----
Confidence 7543 2222222 2222 3467899999962 2333322 22110000 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHH
Q psy1544 764 TILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIV 843 (1331)
Q Consensus 764 ~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 843 (1331)
+...........+.+....
T Consensus 242 -----------------------v~~~~~k~~~i~v~~p~~~-------------------------------------- 260 (876)
T PRK13767 242 -----------------------VDARFVKPFDIKVISPVDD-------------------------------------- 260 (876)
T ss_pred -----------------------EccCCCccceEEEeccCcc--------------------------------------
Confidence 0000000000000000000
Q ss_pred HHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--
Q psy1544 844 QLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-- 921 (1331)
Q Consensus 844 ~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-- 921 (1331)
+. .. ........+...|..+...++++||||+.+..++.+...|...
T Consensus 261 ----------l~-----------------~~----~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 261 ----------LI-----------------HT----PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ----------cc-----------------cc----ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 00 00 0000111222333333445679999999999999999988763
Q ss_pred ----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccccccccccc-C
Q psy1544 922 ----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI-G 996 (1331)
Q Consensus 922 ----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~Ri-G 996 (1331)
+..+..+||+++.++|..+++.|+++ .+. +||||+++++|||++++++||+|++|.+...|+||+||++|- |
T Consensus 310 ~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G--~i~-vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 310 EEYDEDNIGAHHSSLSREVRLEVEEKLKRG--ELK-VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred hhccccceeeeeCCCCHHHHHHHHHHHHcC--CCe-EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCC
Confidence 46799999999999999999999853 444 589999999999999999999999999999999999999986 4
Q ss_pred CCCceEEEE
Q psy1544 997 QKNEVRVLR 1005 (1331)
Q Consensus 997 Q~k~V~V~r 1005 (1331)
......|+-
T Consensus 387 ~~~~g~ii~ 395 (876)
T PRK13767 387 EVSKGRIIV 395 (876)
T ss_pred CCCcEEEEE
Confidence 445555554
No 68
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2e-23 Score=200.27 Aligned_cols=102 Identities=27% Similarity=0.517 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
|+++|+.|++.|++++|++|+.++.+|..+|+++.+||||++|++||||+||++||++ |.|+++|.+||.|||+||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHH
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKARQ 1321 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~~~ 1321 (1331)
||++||.+|.+|..|+++|.+.+.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988753
No 69
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=2.5e-23 Score=197.87 Aligned_cols=108 Identities=24% Similarity=0.375 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.++..+..|++.|++|.|++||++|++|.++|+. .|+||.+|++||||++|++||++|.|.++++|.+||.+||.||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPEL--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCc--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999994 57889999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRVESG 1326 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~ 1326 (1331)
+||++||.||+||.+|+++|...+++++.+
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~~~~ 110 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDELCKN 110 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988753
No 70
>KOG0333|consensus
Probab=99.89 E-value=3.8e-22 Score=227.35 Aligned_cols=343 Identities=19% Similarity=0.282 Sum_probs=230.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHH-HHHHHHHHHh-------cCCCCc-EEEEeCCccH-HHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQT-IALITYLMEK-------KKVNGP-FLIIVPLSTL-SNWSLE 624 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~a-i~li~~l~~~-------~~~~~p-~LIV~P~sll-~qW~~E 624 (1331)
....|.|..++--++ .+++.|+..++|+|||... |-++.++... +...|| .+|++|+..| .|...|
T Consensus 266 ~eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred CCCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 467788999988555 4778899999999999653 3333332211 122233 6899999888 667777
Q ss_pred HHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--cccccCccEEEEeCCcccCC--cchHHHH
Q psy1544 625 FERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--PLAKLHWKYMIIDEGHRMKN--HHCKLTH 698 (1331)
Q Consensus 625 ~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaHrikn--~~sk~~~ 698 (1331)
-.+|+- +++++.+.|...... +......+++|+|.|+..|+.... .|-.....+||+|||.+|-. ..-....
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EE--q~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~ 419 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEE--QGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQK 419 (673)
T ss_pred HHHhcccccceEEEEecccchhh--hhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHH
Confidence 777763 466666666543221 112234578999999999987643 23334678999999999954 4445555
Q ss_pred HHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 699 ILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 699 ~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
.|..+ |..|.-. +.+++..| .++ ...|
T Consensus 420 iL~~m------------Pssn~k~---------------~tde~~~~-----------------------~~~---~~~~ 446 (673)
T KOG0333|consen 420 ILEQM------------PSSNAKP---------------DTDEKEGE-----------------------ERV---RKNF 446 (673)
T ss_pred HHHhC------------CccccCC---------------CccchhhH-----------------------HHH---Hhhc
Confidence 55443 3322110 00011000 000 0000
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
.-. ---.....+.+.|++.-..+-+.++...+....+..-.. +|.
T Consensus 447 ~~~---------k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------------------~~r----- 491 (673)
T KOG0333|consen 447 SSS---------KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------------------TPR----- 491 (673)
T ss_pred ccc---------cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------------------ccc-----
Confidence 000 000223455677888777777776665554433221100 010
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRG 938 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~ 938 (1331)
+...-.++..+.|+..|.++|..... ..+|||.+....++.|++.|...||+++++||+-++++|+
T Consensus 492 ------------veQ~v~m~~ed~k~kkL~eil~~~~~--ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 492 ------------VEQKVEMVSEDEKRKKLIEILESNFD--PPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred ------------hheEEEEecchHHHHHHHHHHHhCCC--CCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 00111234557789999999987643 4899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.++..|+.+.++ +|++|+++|+|||++++.+||+||...+...|.+||||++|.|+.-. +..|++..
T Consensus 558 ~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gt--aiSflt~~ 624 (673)
T KOG0333|consen 558 NALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGT--AISFLTPA 624 (673)
T ss_pred HHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCce--eEEEeccc
Confidence 999999976666 68999999999999999999999999999999999999999998764 34455554
No 71
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.3e-23 Score=200.09 Aligned_cols=105 Identities=27% Similarity=0.457 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
...+.+.|..|++.|+++.+ +++|+.||+...+||||++|++||||+||++||.+|.|.++++|.+||.|||.|
T Consensus 3 ~~~w~~~c~~il~~l~~~~~------s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCED------SEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCc------cccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999766 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCC-CCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1295 AQIYNEE-LSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1295 a~~YN~~-~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|+.||++ ||.||.+|..|+++|++.++++..
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 999999999999999999988753
No 72
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=5.1e-23 Score=194.59 Aligned_cols=94 Identities=30% Similarity=0.407 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy1544 1220 KTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYN 1299 (1331)
Q Consensus 1220 ~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN 1299 (1331)
+.|..|++.|+++.+ |++|..||++..+||||++|++||||+||++||++|.|.|+++|.+||.|||.||+.||
T Consensus 3 ~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05505 3 QKCEEILSKILKYRF------SWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYY 76 (97)
T ss_pred HHHHHHHHHHHhCCC------cccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999998765 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy1544 1300 EELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1300 ~~~S~i~~~A~~L~~~f~~~ 1319 (1331)
++||.||.+|..|+++|.+.
T Consensus 77 ~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 77 ENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 73
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=5.7e-23 Score=197.42 Aligned_cols=102 Identities=31% Similarity=0.543 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
....++.|++.|++++|++||+++++|..+|++..+||||++|++||||++|++||.++.|.|+.+|..||.|||.||+.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~ 1319 (1331)
||++||.+|.+|..|++.|++.
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 74
>PRK02362 ski2-like helicase; Provisional
Probab=99.88 E-value=7.4e-21 Score=245.57 Aligned_cols=321 Identities=20% Similarity=0.147 Sum_probs=201.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC-CC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP-SV 632 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~ 632 (1331)
.+|+|+|.+++..+ +..+.++|++.+||+|||+++...+...+. ..+.+|||+|+. ++.|+..+|.++.+ ++
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 37999999999853 336789999999999999998655444433 245699999995 55889999988753 57
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--cccccCccEEEEeCCcccCCcc--hHHHHHHHH---hcc
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--PLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT---FYV 705 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~---~~~ 705 (1331)
++..+.|....... .....+|+|+|++.+..... ...-...++|||||+|.+.+.. ..+-..+.. ...
T Consensus 96 ~v~~~tGd~~~~~~-----~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 96 RVGISTGDYDSRDE-----WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEEeCCcCcccc-----ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 78888886543221 23467999999987743211 1111246999999999996533 222222222 224
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
..+.++||||.- +..++.. |+........ .
T Consensus 171 ~~qii~lSATl~--n~~~la~------------------wl~~~~~~~~--------------------~---------- 200 (737)
T PRK02362 171 DLQVVALSATIG--NADELAD------------------WLDAELVDSE--------------------W---------- 200 (737)
T ss_pred CCcEEEEcccCC--CHHHHHH------------------HhCCCcccCC--------------------C----------
Confidence 567899999962 3444332 2221100000 0
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
-|-.....+... . . ... ... . +.
T Consensus 201 -----rpv~l~~~v~~~-~--------~-----~~~-~~~----~---------------~~------------------ 223 (737)
T PRK02362 201 -----RPIDLREGVFYG-G--------A-----IHF-DDS----Q---------------RE------------------ 223 (737)
T ss_pred -----CCCCCeeeEecC-C--------e-----ecc-ccc----c---------------cc------------------
Confidence 000000000000 0 0 000 000 0 00
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc------------------------
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR------------------------ 921 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~------------------------ 921 (1331)
+. .. .....+..+.+ ....+.++||||..+..+..++..|...
T Consensus 224 -----~~-~~---~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (737)
T PRK02362 224 -----VE-VP---SKDDTLNLVLD----TLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVS 290 (737)
T ss_pred -----CC-Cc---cchHHHHHHHH----HHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcc
Confidence 00 00 00111222222 2336779999999998877766666432
Q ss_pred ------------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eC-----CCC
Q psy1544 922 ------------GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FD-----SDW 980 (1331)
Q Consensus 922 ------------g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D-----~~w 980 (1331)
...+..+||+++..+|..+.+.|++ +.+.| |+||++++.|+|+++.++||. || .+.
T Consensus 291 ~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~--G~i~V-LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~ 367 (737)
T PRK02362 291 DTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD--RLIKV-ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPI 367 (737)
T ss_pred CccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc--CCCeE-EEechhhhhhcCCCceEEEEecceeecCCCCceeC
Confidence 1357889999999999999999985 45555 899999999999999988886 77 467
Q ss_pred CccccccccccccccCCCCceEEEEEeeC
Q psy1544 981 NPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 981 Np~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+...|.|++|||+|.|....-.++.++..
T Consensus 368 s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 368 PVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 88899999999999998765555555543
No 75
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2e-22 Score=194.84 Aligned_cols=103 Identities=25% Similarity=0.449 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhh-cCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1216 AKLKKTLKKIMRVVIKY-TDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~-~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
+.|++.|..|++.|+++ .. |++|+.||+.. .+||||++|++||||+||++||.+|.|.|+.+|.+||+|||
T Consensus 2 ~~l~~~~~~il~~l~~~~~~------s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 75 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPE------SLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMF 75 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcc------cchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 56889999999999987 44 99999999987 68999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
+||+.||++||.||.+|.+|++.|++.++.+.
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 76 DNAWLYNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 76
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.6e-22 Score=193.57 Aligned_cols=102 Identities=29% Similarity=0.426 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
..+...++.|++.|.++.. |++|+.||+.. .+||||++|++||||+||++||+++.|.|+++|.+||.|||.
T Consensus 4 ~q~~~~~~~il~~l~~~~~------s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~ 77 (107)
T cd05497 4 NQLQYLLKVVLKALWKHKF------AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFT 77 (107)
T ss_pred HHHHHHHHHHHHHHHhCCc------CccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4566777888888888654 99999999976 799999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
||+.||++||.||.+|..|+++|.+.++++
T Consensus 78 Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 78 NCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988754
No 77
>KOG0347|consensus
Probab=99.87 E-value=1.1e-20 Score=216.26 Aligned_cols=363 Identities=20% Similarity=0.286 Sum_probs=228.3
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcC------------CCCcEEEEeCCccH-HHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKK------------VNGPFLIIVPLSTL-SNW 621 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~------------~~~p~LIV~P~sll-~qW 621 (1331)
...+.|...+..++. .....|-|.+||+|||+. +|-++..+.+..+ ...-.|||+|+..| .|.
T Consensus 203 ~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 455566666665553 235667899999999998 6777774443221 12126999999877 788
Q ss_pred HHHHHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc----cCccccc-CccEEEEeCCccc--CCc
Q psy1544 622 SLEFERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD----KGPLAKL-HWKYMIIDEGHRM--KNH 692 (1331)
Q Consensus 622 ~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~-~~~~vIiDEaHri--kn~ 692 (1331)
...|...++ ++.+..+.|+-...+. ..+.....+|||+|++.+..- .-.+..+ +..++|||||+|| +++
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQ--qRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQ--QRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHH--HHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 888887764 5777777777554433 334445899999999988642 1223333 4589999999999 666
Q ss_pred chHHHHHHHHhc-----cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHH
Q psy1544 693 HCKLTHILNTFY-----VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILI 767 (1331)
Q Consensus 693 ~sk~~~~l~~~~-----~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~ 767 (1331)
-..+++.|..+. +.+..+++|||-- +..-. +..... +....+.
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt------------~~~~~--------------~~~~~~-k~~~k~~----- 405 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLT------------LVLQQ--------------PLSSSR-KKKDKED----- 405 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEee------------hhhcC--------------hhHHhh-hccchhh-----
Confidence 666666665553 2355699999931 11000 000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCccc-ccCCCcchHHHHHHHHHHH
Q psy1544 768 IRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEK-GKQGKGGAKALMNTIVQLR 846 (1331)
Q Consensus 768 ~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~Lr 846 (1331)
.+... + +.+... +.-... ..............+..-+
T Consensus 406 --~~~~k-----------------------------------i-q~Lmk~----ig~~~kpkiiD~t~q~~ta~~l~Es~ 443 (731)
T KOG0347|consen 406 --ELNAK-----------------------------------I-QHLMKK----IGFRGKPKIIDLTPQSATASTLTESL 443 (731)
T ss_pred --hhhHH-----------------------------------H-HHHHHH----hCccCCCeeEecCcchhHHHHHHHHh
Confidence 00000 0 000000 000000 0001111122222333333
Q ss_pred HhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEE
Q psy1544 847 KLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYM 926 (1331)
Q Consensus 847 k~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~ 926 (1331)
-.|. | ..|--.|.-+|. ...| |.||||+..+.+..|.-+|...++..+
T Consensus 444 I~C~-~----------------------------~eKD~ylyYfl~--ryPG-rTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 444 IECP-P----------------------------LEKDLYLYYFLT--RYPG-RTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred hcCC-c----------------------------cccceeEEEEEe--ecCC-ceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 3331 1 001111111221 1233 899999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEE
Q psy1544 927 RLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRL 1006 (1331)
Q Consensus 927 ~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rl 1006 (1331)
.+|.+|.+.+|.+.+++|....+ .+||+|+++++|||++++.+||+|..|.+...|++|-||+.|.+..- |.|. |
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsvm-l 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSVM-L 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEEE-E
Confidence 99999999999999999985333 37999999999999999999999999999999999999999987532 3332 2
Q ss_pred eeC---------------------CCHHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1007 MTV---------------------NSVEERILAAARYKLNMDEKVIQAG 1034 (1331)
Q Consensus 1007 i~~---------------------~TiEE~I~~~~~~K~~l~~~vi~~g 1034 (1331)
|.. -.|++.|+........++..+...+
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e 615 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLE 615 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhh
Confidence 322 2468888888888888888876554
No 78
>KOG0348|consensus
Probab=99.87 E-value=3.2e-21 Score=220.05 Aligned_cols=350 Identities=19% Similarity=0.298 Sum_probs=208.2
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhc----CCCCc-EEEEeCCccH-HHHHHHHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKK----KVNGP-FLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~----~~~~p-~LIV~P~sll-~qW~~E~~k~ 628 (1331)
.+.-.|.++|--++. ++..++-..||+|||+.-+. ++..|.... +..|+ .|||||+..| .|-.+-+.+.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 566779999988875 88899999999999999554 444444432 22343 6999999877 6666666666
Q ss_pred cCCCcE----EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCccccc---CccEEEEeCCcccC--CcchHHHHH
Q psy1544 629 APSVNV----VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKL---HWKYMIIDEGHRMK--NHHCKLTHI 699 (1331)
Q Consensus 629 ~p~~~v----~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~---~~~~vIiDEaHrik--n~~sk~~~~ 699 (1331)
...+.. ++..|.. ++.-... ...+.+|+|.|++.+.++...-..+ ....||+|||+|+. +..-.+.++
T Consensus 235 l~~~hWIVPg~lmGGEk--kKSEKAR-LRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~I 311 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEK--KKSEKAR-LRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQI 311 (708)
T ss_pred hcCceEEeeceeecccc--cccHHHH-HhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHH
Confidence 544332 2233322 2222222 3457899999999999876543333 45679999999994 444444555
Q ss_pred HHHhcc-------------CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHH
Q psy1544 700 LNTFYV-------------APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETIL 766 (1331)
Q Consensus 700 l~~~~~-------------~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~ 766 (1331)
+..+-. ....+|||||-- |=
T Consensus 312 l~~v~~~~~~e~~~~~lp~q~q~mLlSATLt-----d~------------------------------------------ 344 (708)
T KOG0348|consen 312 LKAVHSIQNAECKDPKLPHQLQNMLLSATLT-----DG------------------------------------------ 344 (708)
T ss_pred HHHHhhccchhcccccccHHHHhHhhhhhhH-----HH------------------------------------------
Confidence 444310 123466677621 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHH
Q psy1544 767 IIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLR 846 (1331)
Q Consensus 767 ~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr 846 (1331)
.++|..+ .|-+ ...|..+-+..|. .-....+.
T Consensus 345 -V~rLa~~---------------sLkD--pv~I~ld~s~~~~------------------------------~p~~~a~~ 376 (708)
T KOG0348|consen 345 -VNRLADL---------------SLKD--PVYISLDKSHSQL------------------------------NPKDKAVQ 376 (708)
T ss_pred -HHHHhhc---------------cccC--ceeeeccchhhhc------------------------------Ccchhhhh
Confidence 0111000 0000 0011100000000 00000111
Q ss_pred HhcCCccchhhhHhhhhhccCCCCcccC--CccccccchhH--HHHHhhhhhhc--CCCeeEEEeccHHHHHHHHHHHHh
Q psy1544 847 KLCNHPFMFQNIEEKFSDHVGGSGIVSG--PDLYRVSGKFE--LLDRILPKLKS--TGHRVLLFCQMTQLMNILEDYFSY 920 (1331)
Q Consensus 847 k~~~hp~l~~~~~~~~~~~~~~~~~~~~--~~l~~~s~K~~--~L~~lL~~l~~--~g~KVLIFsq~~~~ld~L~~~L~~ 920 (1331)
.+|.-|+-- .++...+... ..+....+|+. .|..+|..... ...|+|||....+..+.-.+.|..
T Consensus 377 ev~~~~~~~---------~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 377 EVDDGPAGD---------KLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred hcCCccccc---------ccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 122211100 0000000000 01122334443 45555554432 335899999999988877666652
Q ss_pred ----------------------cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCC
Q psy1544 921 ----------------------RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDS 978 (1331)
Q Consensus 921 ----------------------~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~ 978 (1331)
.+.++.++||+|++++|..++..|..... .+|+||+++++||||+.++.||-||+
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~ 524 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDP 524 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCC
Confidence 14579999999999999999999985333 37999999999999999999999999
Q ss_pred CCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy1544 979 DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYK 1023 (1331)
Q Consensus 979 ~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K 1023 (1331)
|+++..|++|+||+.|+|-+-.-.. |+...-.| .+..+..+
T Consensus 525 P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae--y~~~l~~~ 565 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE--YVNYLKKH 565 (708)
T ss_pred CCCHHHHHHHhhhhhhccCCCceEE--EecccHHH--HHHHHHhh
Confidence 9999999999999999998876443 34444333 33443433
No 79
>KOG0335|consensus
Probab=99.86 E-value=8.3e-21 Score=220.57 Aligned_cols=320 Identities=18% Similarity=0.245 Sum_probs=217.7
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHH-HHHHHHHHhcC---------CCCcEEEEeCCccH-HHH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTI-ALITYLMEKKK---------VNGPFLIIVPLSTL-SNW 621 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai-~li~~l~~~~~---------~~~p~LIV~P~sll-~qW 621 (1331)
-+..+.|+|+-++.-+. .+++.+.+..||+|||...+ .++.+++..+. ....+||++|++-| .|-
T Consensus 93 ~~~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi 168 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQI 168 (482)
T ss_pred cccCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHH
Confidence 45679999999998666 48888999999999999854 56666666533 12348999999766 889
Q ss_pred HHHHHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCC---cch
Q psy1544 622 SLEFERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKN---HHC 694 (1331)
Q Consensus 622 ~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn---~~s 694 (1331)
.+|..++.- .++.++.+|....+.... ....+++|+++|...+..- .+.+..-...++|||||++|-. +..
T Consensus 169 ~nea~k~~~~s~~~~~~~ygg~~~~~q~~--~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p 246 (482)
T KOG0335|consen 169 YNEARKFSYLSGMKSVVVYGGTDLGAQLR--FIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEP 246 (482)
T ss_pred HHHHHhhcccccceeeeeeCCcchhhhhh--hhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccc
Confidence 999998864 344444445444333322 2356899999999998763 3344444567999999999955 334
Q ss_pred HHHHHHHHhc----cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHH
Q psy1544 695 KLTHILNTFY----VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRR 770 (1331)
Q Consensus 695 k~~~~l~~~~----~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~r 770 (1331)
.+.+++...- ..++.+++|||= ...
T Consensus 247 ~Ir~iv~~~~~~~~~~~qt~mFSAtf-p~~-------------------------------------------------- 275 (482)
T KOG0335|consen 247 QIRKIVEQLGMPPKNNRQTLLFSATF-PKE-------------------------------------------------- 275 (482)
T ss_pred cHHHHhcccCCCCccceeEEEEeccC-Chh--------------------------------------------------
Confidence 4555554332 245567888871 000
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcC
Q psy1544 771 LHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCN 850 (1331)
Q Consensus 771 L~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 850 (1331)
+..+...|+.- - ...+.+. .... .. ..
T Consensus 276 iq~l~~~fl~~---------~----yi~laV~------------------rvg~-----~~----~n------------- 302 (482)
T KOG0335|consen 276 IQRLAADFLKD---------N----YIFLAVG------------------RVGS-----TS----EN------------- 302 (482)
T ss_pred hhhhHHHHhhc---------c----ceEEEEe------------------eecc-----cc----cc-------------
Confidence 11111111100 0 0000000 0000 00 00
Q ss_pred CccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhc---C----CCeeEEEeccHHHHHHHHHHHHhcCC
Q psy1544 851 HPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKS---T----GHRVLLFCQMTQLMNILEDYFSYRGF 923 (1331)
Q Consensus 851 hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~---~----g~KVLIFsq~~~~ld~L~~~L~~~g~ 923 (1331)
+...-.++....|...|.++|.+... . .++++||+..++.++.|+.+|...|+
T Consensus 303 --------------------i~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~ 362 (482)
T KOG0335|consen 303 --------------------ITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY 362 (482)
T ss_pred --------------------ceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC
Confidence 00000112334556666666655441 1 24899999999999999999999999
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 924 KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 924 ~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
++..|||..++.+|.+.++.|.++. +. +||+|.++++|||++++.+||+||.|-+-..|++||||++|.|+.--...
T Consensus 363 ~~~sIhg~~tq~er~~al~~Fr~g~--~p-vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 363 PAKSIHGDRTQIEREQALNDFRNGK--AP-VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred CceeecchhhhhHHHHHHHHhhcCC--cc-eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 9999999999999999999999644 44 58999999999999999999999999999999999999999998876555
Q ss_pred EE
Q psy1544 1004 LR 1005 (1331)
Q Consensus 1004 ~r 1005 (1331)
|.
T Consensus 440 f~ 441 (482)
T KOG0335|consen 440 FF 441 (482)
T ss_pred Ee
Confidence 43
No 80
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=7.5e-22 Score=192.91 Aligned_cols=103 Identities=27% Similarity=0.524 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
+.....|..|++.|+++.+ +++|+.||++..+||||++|++||||+||++||++|.|.|+++|.+||.|||.||
T Consensus 11 ~~~~~~c~~il~~l~~~~~------s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na 84 (115)
T cd05504 11 PLNLSALEQLLVEIVKHKD------SWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNC 84 (115)
T ss_pred HHHHHHHHHHHHHHHhCCC------chhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 3455789999999998755 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
++||++||.+|.+|..|+++|++.++++.
T Consensus 85 ~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 85 FLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998874
No 81
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=9.8e-22 Score=190.51 Aligned_cols=105 Identities=26% Similarity=0.523 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
.+.+...|..|++.|+++. ..|++|+.||+++.+||||++|++||||+||++||+++.|+|+++|.+||.|||.|
T Consensus 5 ~~~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N 79 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKN 79 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 5678899999999999974 24999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCC-HHHHHHHHHHHHHHHHHHHhc
Q psy1544 1295 AQIYNEELS-LIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1295 a~~YN~~~S-~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
|+.||+++| .++.+|..|++.|.+.+..+.
T Consensus 80 ~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 80 CLLYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999877 678999999999999998874
No 82
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=9.9e-22 Score=189.03 Aligned_cols=101 Identities=26% Similarity=0.339 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..+++.|..|++.|.++.. +++|..||+...+||||++|++||||+||++||++|.|.|+++|.+||.|||.||
T Consensus 2 ~~~~~~~~~il~~l~~~~~------a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 2 RAWKKAILLVYRTLASHRY------ASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred hHHHHHHHHHHHHHHcCCC------CHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3578899999999998665 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQR 1322 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~ 1322 (1331)
++||+++|.||.+|..|++.|.+.++.
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999888764
No 83
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.2e-21 Score=185.69 Aligned_cols=96 Identities=25% Similarity=0.383 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+...|..+++.+. +. .|++|..||++..+||||.+|++||||+||++||++|.|.|+++|.+||+|||.||+
T Consensus 3 ~l~~~L~~~~~~~~-~~------~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~ 75 (99)
T cd05508 3 QLSKLLKFALERMK-QP------GAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAI 75 (99)
T ss_pred HHHHHHHHHHHHHh-Cc------CcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46677777888776 43 499999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~ 1319 (1331)
+||++||.++.+|..|.+.|...
T Consensus 76 ~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 76 IYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999998753
No 84
>PRK00254 ski2-like helicase; Provisional
Probab=99.86 E-value=5.3e-20 Score=237.05 Aligned_cols=320 Identities=19% Similarity=0.171 Sum_probs=197.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQT-IALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~a-i~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~ 631 (1331)
.+|+|+|.+++... +.++.+.|++.+||+|||+++ ++++..+... .+.+|+|+|...+ .++..+|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 47999999999732 235889999999999999998 4444444432 3569999999655 888888887743 5
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc--ccccCccEEEEeCCcccCC--cchHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP--LAKLHWKYMIIDEGHRMKN--HHCKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaHrikn--~~sk~~~~l~~~~~~~ 707 (1331)
+.+..+.|....... ....++|+|+|++.+...... ..--+.++|||||+|.+.. ....+...+..+....
T Consensus 96 ~~v~~~~Gd~~~~~~-----~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 96 LRVAMTTGDYDSTDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred CEEEEEeCCCCCchh-----hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 677777776443221 234689999999877543211 1112578999999999964 3344445555554567
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.++||||.- +..++.. |+........
T Consensus 171 qiI~lSATl~--n~~~la~------------------wl~~~~~~~~--------------------------------- 197 (720)
T PRK00254 171 QILGLSATVG--NAEELAE------------------WLNAELVVSD--------------------------------- 197 (720)
T ss_pred cEEEEEccCC--CHHHHHH------------------HhCCccccCC---------------------------------
Confidence 7899999962 2344332 2221100000
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
.-|-.....+... ....... . ...
T Consensus 198 --~rpv~l~~~~~~~---------------~~~~~~~------~--~~~------------------------------- 221 (720)
T PRK00254 198 --WRPVKLRKGVFYQ---------------GFLFWED------G--KIE------------------------------- 221 (720)
T ss_pred --CCCCcceeeEecC---------------CeeeccC------c--chh-------------------------------
Confidence 0000000000000 0000000 0 000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh---------------------------
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY--------------------------- 920 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~--------------------------- 920 (1331)
.. ...+..++..+...+.++||||..+..+..++..|..
T Consensus 222 -----------~~---~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 222 -----------RF---PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -----------cc---hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 00 0001112222233567899999998876555443321
Q ss_pred ------cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE-------eCCCC-Cccccc
Q psy1544 921 ------RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII-------FDSDW-NPHQDL 986 (1331)
Q Consensus 921 ------~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~-------~D~~w-Np~~~~ 986 (1331)
.+..+..+||+++.++|..+.+.|++ +.+.| |+||++++.|+|+++.++||. ++.++ ....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~--G~i~V-LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFRE--GLIKV-ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC--CCCeE-EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 12358899999999999999999995 45554 999999999999999888874 33222 334789
Q ss_pred cccccccccCCCCceEEEEEeeCCC
Q psy1544 987 QAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 987 QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
|++|||+|.|....-.++.++..+.
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998766656665665543
No 85
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.86 E-value=4e-20 Score=220.24 Aligned_cols=312 Identities=18% Similarity=0.201 Sum_probs=190.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCCCcEEEecCChhHHH-----------
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPSVNVVAYKGSPHLRK----------- 645 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v~~~~g~~~~r~----------- 645 (1331)
.++..+||+|||.+++.++...+... ..+.+++|+|.. ++.|+.+.+..++.. .+..++|......
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 47889999999999888877765543 345699999985 558999999888654 3444444332110
Q ss_pred HHHHHh-----hccCccEEEeeHHHHHhccCc--------ccccCccEEEEeCCcccCCcchH-HHHHHHHhc-cCCcee
Q psy1544 646 TLQAQM-----KASKFNVLLTTYEYVIKDKGP--------LAKLHWKYMIIDEGHRMKNHHCK-LTHILNTFY-VAPHRL 710 (1331)
Q Consensus 646 ~~~~~~-----~~~~~~VvItTye~l~~~~~~--------l~~~~~~~vIiDEaHrikn~~sk-~~~~l~~~~-~~~~rl 710 (1331)
...... ......|+++|++.+...... +..+...+|||||+|.+...... +...+..+. ...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 000010 112467999999987654222 12223479999999999754322 233333222 245679
Q ss_pred eeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1544 711 LLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 790 (1331)
Q Consensus 711 lLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~ 790 (1331)
++|||+- ..+. .|+ ..+...
T Consensus 160 ~~SATlp----~~l~---~~~------------~~~~~~----------------------------------------- 179 (358)
T TIGR01587 160 LMSATLP----KFLK---EYA------------EKIGYV----------------------------------------- 179 (358)
T ss_pred EEecCch----HHHH---HHH------------hcCCCc-----------------------------------------
Confidence 9999952 1010 000 000000
Q ss_pred CCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCC
Q psy1544 791 LPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSG 870 (1331)
Q Consensus 791 LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 870 (1331)
+ .......... +....|++...
T Consensus 180 -~----~~~~~~~~~~---------------------------------------~~~~~~~~~~~-------------- 201 (358)
T TIGR01587 180 -E----FNEPLDLKEE---------------------------------------RRFERHRFIKI-------------- 201 (358)
T ss_pred -c----cccCCCCccc---------------------------------------cccccccceee--------------
Confidence 0 0000000000 00001110000
Q ss_pred cccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHH----HHHh
Q psy1544 871 IVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGF--KYMRLDGTTKAEDRGDL----LKKF 944 (1331)
Q Consensus 871 ~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~--~~~~idG~~~~~eR~~~----i~~F 944 (1331)
......|...+..++..+ ..+.++||||+.+..++.+...|...+. .+..+||+++..+|... ++.|
T Consensus 202 ------~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f 274 (358)
T TIGR01587 202 ------ESDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEM 274 (358)
T ss_pred ------ccccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 000123445555555433 3567999999999999999999988766 59999999999999764 8899
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCC----ceEEEEEeeCC---CHHHHHH
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKN----EVRVLRLMTVN---SVEERIL 1017 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k----~V~V~rli~~~---TiEE~I~ 1017 (1331)
.+ +... +||||+++++|||+ .+++||+++.+ +..++||+||++|.|.+. .|+||.....+ ..+..++
T Consensus 275 ~~--~~~~-ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 348 (358)
T TIGR01587 275 KK--NEKF-VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELV 348 (358)
T ss_pred cC--CCCe-EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHH
Confidence 85 3334 58999999999999 58999998765 788999999999999764 35665554444 3344444
Q ss_pred HHHHH
Q psy1544 1018 AAARY 1022 (1331)
Q Consensus 1018 ~~~~~ 1022 (1331)
++-..
T Consensus 349 ~~t~~ 353 (358)
T TIGR01587 349 ERTIQ 353 (358)
T ss_pred HHHHH
Confidence 44333
No 86
>KOG0339|consensus
Probab=99.86 E-value=1e-20 Score=214.24 Aligned_cols=324 Identities=23% Similarity=0.319 Sum_probs=225.4
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHH-HHHHHHh---cCCCCcE-EEEeCCccH-HHHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAL-ITYLMEK---KKVNGPF-LIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~l-i~~l~~~---~~~~~p~-LIV~P~sll-~qW~~E~~k 627 (1331)
..+..|.|-++|.-.++ +...|-..-+|+|||...+.- +.+.+.. ....+|+ ||+||+..+ .|...|.++
T Consensus 243 y~kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKk 318 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKK 318 (731)
T ss_pred cccCCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHH
Confidence 34677788888876664 666665677999999764432 2333322 3345675 667799666 888899999
Q ss_pred HcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHH
Q psy1544 628 WAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILN 701 (1331)
Q Consensus 628 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~ 701 (1331)
|+. ++++++.+|........... ..+..+||+|++.++... ..+...+..++|||||.||... ..+...+..
T Consensus 319 f~K~ygl~~v~~ygGgsk~eQ~k~L--k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 319 FGKAYGLRVVAVYGGGSKWEQSKEL--KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQ 396 (731)
T ss_pred hhhhccceEEEeecCCcHHHHHHhh--hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHh
Confidence 864 57777777766555444333 267899999999998753 2233346789999999999554 344444444
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
.+...+..|+++||- . .++.++.+.
T Consensus 397 hirpdrQtllFsaTf--------------------------~-------------------------~kIe~lard---- 421 (731)
T KOG0339|consen 397 HIRPDRQTLLFSATF--------------------------K-------------------------KKIEKLARD---- 421 (731)
T ss_pred hcCCcceEEEeeccc--------------------------h-------------------------HHHHHHHHH----
Confidence 444466789999992 1 011111221
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhh
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEK 861 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 861 (1331)
+ |-+.+. +|..+... ....|.|.--+|
T Consensus 422 -----~---L~dpVr-vVqg~vge--------------------------------an~dITQ~V~V~------------ 448 (731)
T KOG0339|consen 422 -----I---LSDPVR-VVQGEVGE--------------------------------ANEDITQTVSVC------------ 448 (731)
T ss_pred -----H---hcCCee-EEEeehhc--------------------------------cccchhheeeec------------
Confidence 1 111111 11111100 000011111111
Q ss_pred hhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Q psy1544 862 FSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLL 941 (1331)
Q Consensus 862 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i 941 (1331)
.....|+.+|.+-|.+....| +||||..-...++.|...|...|+++..+||++.+.+|.+.|
T Consensus 449 ----------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 449 ----------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred ----------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 112458888888888877766 899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
..|+..... +|+.|+++.+||++....+||+||.--+-..+.|||||.+|.|.+ -..|.|+|....+
T Consensus 512 s~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 512 SKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HHHhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999965444 589999999999999999999999999999999999999999987 4678888875444
No 87
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.3e-21 Score=186.09 Aligned_cols=95 Identities=23% Similarity=0.434 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy1544 1220 KTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYN 1299 (1331)
Q Consensus 1220 ~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN 1299 (1331)
..|..|++.|.++. .+++|+.||++..+||||++|++||||+||++||.+|.|+|+++|.+||.|||.||+.||
T Consensus 3 ~~c~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 76 (97)
T cd05503 3 ALCETILDEMEAHE------DAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFN 76 (97)
T ss_pred HHHHHHHHHHHcCC------CchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999864 499999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy1544 1300 EELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1300 ~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
++||.||.+|..|+++|++.|
T Consensus 77 ~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 77 EDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999865
No 88
>KOG0341|consensus
Probab=99.85 E-value=2.4e-21 Score=212.63 Aligned_cols=324 Identities=21% Similarity=0.343 Sum_probs=214.6
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHh------cCCCCc-EEEEeCCccHHHH-HHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEK------KKVNGP-FLIIVPLSTLSNW-SLEFE 626 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~------~~~~~p-~LIV~P~sll~qW-~~E~~ 626 (1331)
...|.|.+|+--+++ ++.-|-..-||+|||++ ++.+|...++. ....|| -|||||+..|... ..-+.
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 577889999988876 77767667899999987 34444433332 123344 4999999887433 33333
Q ss_pred HHc--------CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--ch
Q psy1544 627 RWA--------PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HC 694 (1331)
Q Consensus 627 k~~--------p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~s 694 (1331)
.|+ |.++.....|.-..+..+.. ...+.+|++.|+..+.+-. ..++-.-..|+.+|||+||-.. ..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~--v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDV--VRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHH--HhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchh
Confidence 332 55666666666655554432 3457899999999887532 2222224578999999999543 33
Q ss_pred HHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHH
Q psy1544 695 KLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 774 (1331)
Q Consensus 695 k~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~ 774 (1331)
.+..++.-+...+..||+|||-- ..+ ..| ... .+
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP-~KI------------------Q~F----AkS-----------------------AL 379 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMP-KKI------------------QNF----AKS-----------------------AL 379 (610)
T ss_pred hHHHHHHHHhhhhheeeeecccc-HHH------------------HHH----HHh-----------------------hc
Confidence 34334433323567899999931 000 001 000 00
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
++| .+|.+ +..++.+ ++.+..+.
T Consensus 380 VKP-------------------vtvNV-----------------------------GRAGAAs-ldViQevE-------- 402 (610)
T KOG0341|consen 380 VKP-------------------VTVNV-----------------------------GRAGAAS-LDVIQEVE-------- 402 (610)
T ss_pred ccc-------------------eEEec-----------------------------ccccccc-hhHHHHHH--------
Confidence 000 01110 0111111 11111110
Q ss_pred hhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCH
Q psy1544 855 FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKA 934 (1331)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~ 934 (1331)
.+...+|+-+|.+-|. .+.-.|||||.-....|.|..||-..|+..+.|||+-.+
T Consensus 403 ----------------------yVkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 403 ----------------------YVKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred ----------------------HHHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 1122345555555554 455589999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHH
Q psy1544 935 EDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEE 1014 (1331)
Q Consensus 935 ~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE 1014 (1331)
++|...|..|+.+..+ +|++|++++-|||+++..+||+||.|-.-..|.+||||++|-|.+- ....||..++-+.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G--iATTfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG--IATTFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc--eeeeeecccchHH
Confidence 9999999999975554 6999999999999999999999999999999999999999999765 4445677777665
Q ss_pred HHHH
Q psy1544 1015 RILA 1018 (1331)
Q Consensus 1015 ~I~~ 1018 (1331)
.+++
T Consensus 533 vLlD 536 (610)
T KOG0341|consen 533 VLLD 536 (610)
T ss_pred HHHH
Confidence 5544
No 89
>PRK01172 ski2-like helicase; Provisional
Probab=99.85 E-value=7.8e-20 Score=234.50 Aligned_cols=311 Identities=19% Similarity=0.167 Sum_probs=194.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-CC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-SV 632 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~~ 632 (1331)
.+|+++|.+++..+. ++.+.|++.+||+|||+++...+...+.. .+.+++|+|...| .++.++|.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 47889999999999999987665554443 2458999999655 888888887643 45
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHH---hcc
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT---FYV 705 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~---~~~ 705 (1331)
.+..+.|....... .....+|+|+|++.+.... ....-.++++|||||+|.+.+.. ..+...+.. ...
T Consensus 94 ~v~~~~G~~~~~~~-----~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~ 168 (674)
T PRK01172 94 RVKISIGDYDDPPD-----FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP 168 (674)
T ss_pred eEEEEeCCCCCChh-----hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc
Confidence 66666665432211 1235799999998764321 11112257899999999996432 222222222 223
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
..+.++||||.- +..+ |.+|+........
T Consensus 169 ~~riI~lSATl~--n~~~------------------la~wl~~~~~~~~------------------------------- 197 (674)
T PRK01172 169 DARILALSATVS--NANE------------------LAQWLNASLIKSN------------------------------- 197 (674)
T ss_pred CCcEEEEeCccC--CHHH------------------HHHHhCCCccCCC-------------------------------
Confidence 456799999962 2333 3333332110000
Q ss_pred HHhhhCCCceEE-EEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544 786 EVESQLPDKVEY-IIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD 864 (1331)
Q Consensus 786 ~v~~~LP~k~e~-~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 864 (1331)
.-|..... ++... .+| .....
T Consensus 198 ----~r~vpl~~~i~~~~------~~~----------~~~~~-------------------------------------- 219 (674)
T PRK01172 198 ----FRPVPLKLGILYRK------RLI----------LDGYE-------------------------------------- 219 (674)
T ss_pred ----CCCCCeEEEEEecC------eee----------ecccc--------------------------------------
Confidence 00000000 11000 000 00000
Q ss_pred ccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-----------------------
Q psy1544 865 HVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR----------------------- 921 (1331)
Q Consensus 865 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~----------------------- 921 (1331)
..+. .+..++.+....+.++||||..+..+..+...|...
T Consensus 220 ----------------~~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~ 282 (674)
T PRK01172 220 ----------------RSQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNE 282 (674)
T ss_pred ----------------cccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHH
Confidence 0000 022333444456779999999999888777776542
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCC---------CCCccccccccc
Q psy1544 922 --GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDS---------DWNPHQDLQAQD 990 (1331)
Q Consensus 922 --g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~---------~wNp~~~~QaiG 990 (1331)
...+..+||+++.++|..+.+.|++ +.+.| |+||++++.|+|+++ .+||++|. ++++..+.|++|
T Consensus 283 ~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~G 358 (674)
T PRK01172 283 MLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIKV-IVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIG 358 (674)
T ss_pred HHhcCEEEecCCCCHHHHHHHHHHHHc--CCCeE-EEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhh
Confidence 1246778999999999999999984 44555 899999999999996 57777764 346667889999
Q ss_pred cccccCCCCceEEEEEe
Q psy1544 991 RAHRIGQKNEVRVLRLM 1007 (1331)
Q Consensus 991 Ra~RiGQ~k~V~V~rli 1007 (1331)
||+|.|.......+-++
T Consensus 359 RAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 359 RAGRPGYDQYGIGYIYA 375 (674)
T ss_pred cCCCCCCCCcceEEEEe
Confidence 99999976553333333
No 90
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=3.1e-20 Score=223.62 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=221.7
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSV 632 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~ 632 (1331)
...+|+-|.++|..+++ +.++|...+||.||++..- |-.++. .|.+|||.|. +++....+.+...+ +
T Consensus 15 y~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQ--iPAll~----~G~TLVVSPLiSLM~DQV~~l~~~G--i 82 (590)
T COG0514 15 YASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQ--IPALLL----EGLTLVVSPLISLMKDQVDQLEAAG--I 82 (590)
T ss_pred ccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhh--hHHHhc----CCCEEEECchHHHHHHHHHHHHHcC--c
Confidence 45789999999998886 7899999999999998632 222222 5679999998 77788888888865 3
Q ss_pred cEEEecC--ChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcc-------hHHHHHHH
Q psy1544 633 NVVAYKG--SPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHH-------CKLTHILN 701 (1331)
Q Consensus 633 ~v~~~~g--~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~-------sk~~~~l~ 701 (1331)
.+....+ +...+..+......+..+++..+++.+... ...|......++||||||.+..++ ..+.....
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 3333333 456667777777888899999999999765 344567789999999999985543 23333333
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
. +...-++.||||--..-..|+...|+.-.+..|.+ .|..|-
T Consensus 163 ~-~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~------sfdRpN------------------------------- 204 (590)
T COG0514 163 G-LPNPPVLALTATATPRVRDDIREQLGLQDANIFRG------SFDRPN------------------------------- 204 (590)
T ss_pred h-CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe------cCCCch-------------------------------
Confidence 3 34567899999976666666666665544332211 011000
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhh
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEK 861 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 861 (1331)
. .|.. +..
T Consensus 205 ------------i---------------~~~v--------------------------------~~~------------- 212 (590)
T COG0514 205 ------------L---------------ALKV--------------------------------VEK------------- 212 (590)
T ss_pred ------------h---------------hhhh--------------------------------hhc-------------
Confidence 0 0000 000
Q ss_pred hhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Q psy1544 862 FSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLL 941 (1331)
Q Consensus 862 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i 941 (1331)
.....++.+|.. .....+...||||.++..++.+...|...|++...+||+++.++|..+-
T Consensus 213 ----------------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q 273 (590)
T COG0514 213 ----------------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQ 273 (590)
T ss_pred ----------------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHH
Confidence 000001111111 1123334589999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
++|..++.. ++|+|.|.|.|||-+++..||+||+|-|...|.|-+|||+|.|...++.++
T Consensus 274 ~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 274 QAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred HHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 999965443 589999999999999999999999999999999999999999988876553
No 91
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.1e-21 Score=185.55 Aligned_cols=100 Identities=29% Similarity=0.527 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
+...|..|++.|.++.. +++|+.||++..+||||++|++||||+||++||+++.|.|+++|..||.|||.||+.
T Consensus 2 ~~~~~~~il~~l~~~~~------a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 75 (101)
T cd05509 2 LYTQLKKVLDSLKNHKS------AWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRL 75 (101)
T ss_pred hHHHHHHHHHHHHhCCC------chhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56789999999999765 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
||++||.+|.+|..|++.|++.++++
T Consensus 76 yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 76 YNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998764
No 92
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.85 E-value=6.8e-20 Score=229.38 Aligned_cols=105 Identities=21% Similarity=0.435 Sum_probs=87.7
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH-----HHHHHhcC----CC-----CCceEEEeecccc
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRG-----DLLKKFNA----PD-----SEYFIFVLSTRAG 961 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~-----~~i~~Fn~----~~-----~~~~v~LlST~ag 961 (1331)
..+.++||||+.+..++.|...|...++ ..+||.+++.+|. .++++|.. +. .+. .+||+|+++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVa 346 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAG 346 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchh
Confidence 4567899999999999999999998887 8999999999999 78999975 11 113 469999999
Q ss_pred ccccCCCCCCEEEEeCCCCCccccccccccccccCCCCc--eEEEEE
Q psy1544 962 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE--VRVLRL 1006 (1331)
Q Consensus 962 geGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~--V~V~rl 1006 (1331)
+.|||+.. ++||+++.++ ..|+||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999986 9999987765 789999999999998644 444433
No 93
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=6.7e-21 Score=179.62 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy1544 1220 KTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYN 1299 (1331)
Q Consensus 1220 ~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN 1299 (1331)
..|+.|+..|..+.+ |++|...| ..+||||++|++||||+||++||.+|.|.|+++|.+||+|||+||++||
T Consensus 5 ~~ce~il~~l~~~~~------s~~f~~~p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN 76 (102)
T cd05501 5 LKCEFLLLKVYCMSK------SGFFISKP--YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFY 76 (102)
T ss_pred HHHHHHHHHHHhCcc------cccccCCC--CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 459999999999877 88997654 5899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1300 EELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1300 ~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
+++ .++.+|..|++.|++.++++.
T Consensus 77 ~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 77 KDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999998764
No 94
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=4.7e-21 Score=184.38 Aligned_cols=98 Identities=23% Similarity=0.491 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1220 KTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1220 ~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
+.|..|++.|++..+ +.++++|+.||++. .+||||++|++||||++|++||+++.|.|+.+|..||+|||.||+.
T Consensus 3 ~~c~~Il~~l~~~~~---~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~ 79 (102)
T cd05499 3 KFCEEVLKELMKPKH---SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYT 79 (102)
T ss_pred HHHHHHHHHHHcccC---CcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 578899999988643 56899999999988 9999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHH
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
||++||.+|.+|..|++.|++.|
T Consensus 80 yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 80 FNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 95
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=9.6e-21 Score=184.28 Aligned_cols=103 Identities=25% Similarity=0.411 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhC---CCCCCHHHHHHHHHHHHH
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIED---GKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~---~~Y~s~~~f~~D~~lm~~ 1293 (1331)
..++.|..|+..|+++. .|++|+.||++ .+||||++|++||||+||++||+. +.|.++++|.+||+|||.
T Consensus 4 ~~~~~c~~il~~l~~~~------~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~ 76 (109)
T cd05502 4 IDQRKCERLLLELYCHE------LSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFK 76 (109)
T ss_pred HHHHHHHHHHHHHHhCC------CChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 45678999999999864 49999999999 899999999999999999999998 599999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVESG 1326 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~ 1326 (1331)
||+.||++||.++.+|..|++.|++.+.++.++
T Consensus 77 Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 77 NCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999988653
No 96
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=4.3e-21 Score=181.47 Aligned_cols=94 Identities=26% Similarity=0.427 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
+...|..|++.|.+... +++|..||+...+||||++|++||||+||++||+++.|.|+++|.+||.|||.||++
T Consensus 2 l~~~l~~il~~l~~~~~------~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 75 (98)
T cd05513 2 LQKALEQLIRQLQRKDP------HGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMK 75 (98)
T ss_pred HHHHHHHHHHHHHcCCc------cccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56788899999988554 899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q psy1544 1298 YNEELSLIHEDSVVLESVFT 1317 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~ 1317 (1331)
||++||.+|.+|..|...-.
T Consensus 76 yN~~~s~~~~~A~~L~~~~~ 95 (98)
T cd05513 76 YNKPDTIYYKAAKKLLHSGM 95 (98)
T ss_pred HCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999976543
No 97
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.84 E-value=7.4e-21 Score=184.61 Aligned_cols=103 Identities=25% Similarity=0.458 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.++..|..|++.|+++.. +++|..||+...+||||++|++||||+||++|++++.|.|+++|.+||.|||.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 3 ELRLFLRDVLKRLASDKR------FNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred HHHHHHHHHHHHHHhCCC------chhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHH
Confidence 467788999999998755 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC----CCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1297 IYNEE----LSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1297 ~YN~~----~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
.||++ ||.||.+|..|+++|..++.+..+
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999 579999999999999999887643
No 98
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=6.2e-21 Score=180.95 Aligned_cols=93 Identities=24% Similarity=0.439 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
+...|+.+++.|.++.. +++|..||++..+||||++|++||||+||++||.++.|.|+++|..||.|||.||+.
T Consensus 2 ~~~~l~~il~~l~~~~~------~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 75 (98)
T cd05512 2 LEVLLRKTLDQLQEKDT------AEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLA 75 (98)
T ss_pred HHHHHHHHHHHHHhCCC------chhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56678899999988554 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHH
Q psy1544 1298 YNEELSLIHEDSVVLESVF 1316 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f 1316 (1331)
||++||.+|++|..|++.-
T Consensus 76 yN~~~s~~~~~A~~l~~~~ 94 (98)
T cd05512 76 YNAKDTIFYRAAVRLRDQG 94 (98)
T ss_pred HCCCCCHHHHHHHHHHHhh
Confidence 9999999999999998753
No 99
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=183.96 Aligned_cols=101 Identities=28% Similarity=0.456 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
...+..|++.|+++.. +++|+.||++..+||||++|++||||+||++|+.++.|.|+++|.+||.|||.||+.|
T Consensus 2 ~~~l~~ii~~l~~~~~------s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 75 (112)
T cd05511 2 SFILDEIVNELKNLPD------SWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLY 75 (112)
T ss_pred HHHHHHHHHHHHhCCC------chhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999988654 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1299 NEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|+++|.+|.+|..|.+.|...++++..
T Consensus 76 N~~~s~i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 76 NGPDSVYTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999988754
No 100
>KOG0336|consensus
Probab=99.83 E-value=6.1e-20 Score=203.06 Aligned_cols=310 Identities=17% Similarity=0.266 Sum_probs=208.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH--HHH---HHHHh-cCCCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA--LIT---YLMEK-KKVNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~--li~---~l~~~-~~~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
+..|.|-++---++ .+...|-...||+|||+.-+. ++. ..... ....-.+||+.|+..| .|-..|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 45566666543333 477888889999999987542 111 11111 1122238999999877 5666677665
Q ss_pred c-CC-CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccC--CcchHHHHHHHH
Q psy1544 629 A-PS-VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMK--NHHCKLTHILNT 702 (1331)
Q Consensus 629 ~-p~-~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrik--n~~sk~~~~l~~ 702 (1331)
. .+ ..+++|.|... ...+. -...+++++|+|+..+.+. ...+.--...|||+|||++|. ++.-++.++|..
T Consensus 318 syng~ksvc~ygggnR-~eqie--~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNR-NEQIE--DLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hhcCcceEEEecCCCc-hhHHH--HHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 4 23 44555555432 22222 2346789999999998764 233333456899999999995 455678888888
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
+...+..++-|||-- --+||
T Consensus 395 iRPDRqtvmTSATWP------------------------------------------------------------~~Vrr 414 (629)
T KOG0336|consen 395 IRPDRQTVMTSATWP------------------------------------------------------------EGVRR 414 (629)
T ss_pred cCCcceeeeecccCc------------------------------------------------------------hHHHH
Confidence 766677788888820 01122
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
+.....++ +...++=.++|.. |+.
T Consensus 415 La~sY~Ke--p~~v~vGsLdL~a-------------------------------------------~~s----------- 438 (629)
T KOG0336|consen 415 LAQSYLKE--PMIVYVGSLDLVA-------------------------------------------VKS----------- 438 (629)
T ss_pred HHHHhhhC--ceEEEecccceee-------------------------------------------eee-----------
Confidence 22111100 0000000011100 000
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~ 942 (1331)
.....-+...+.|++.+..++..+ ....||||||....++|.|..-|...|+....+||+-.+.+|+.+++
T Consensus 439 --------VkQ~i~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~ 509 (629)
T KOG0336|consen 439 --------VKQNIIVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALE 509 (629)
T ss_pred --------eeeeEEecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHH
Confidence 000001122355776666666554 55679999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCc
Q psy1544 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 1000 (1331)
Q Consensus 943 ~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~ 1000 (1331)
.|+. +.++ +|++|+.+++|||++++.+|++||.|-|-..|.+|+||++|.|.+-.
T Consensus 510 ~~ks--G~vr-ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 510 DFKS--GEVR-ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhc--CceE-EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 9984 4455 59999999999999999999999999999999999999999997664
No 101
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.4e-20 Score=181.25 Aligned_cols=99 Identities=23% Similarity=0.398 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+.|..|++.|+++ .|+.++++|+.||+.. .+||||++|++||||++|++||.+|.|.|+++|..||+|||.||+
T Consensus 2 ~~~c~~il~~l~~~---~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~ 78 (102)
T cd05498 2 LKFCSGILKELFSK---KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCY 78 (102)
T ss_pred hhHHHHHHHHHHhC---CCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999886 4578899999998875 689999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHH
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
.||++||.|+.+|..|++.|++.|
T Consensus 79 ~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 79 KYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999864
No 102
>KOG0326|consensus
Probab=99.83 E-value=8.6e-21 Score=204.34 Aligned_cols=314 Identities=19% Similarity=0.264 Sum_probs=223.2
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH----HHHHHHHHHHcCC
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL----SNWSLEFERWAPS 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~~p~ 631 (1331)
+..|.|.++|--++. +.+.+.-.-.|+|||-..+--+...+......--.+|+||+..+ +|.+.++.++. +
T Consensus 107 kPSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 456789999887774 44444446789999976443333333333333347999999766 67888888887 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcch--HHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHC--KLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~s--k~~~~l~~~~~~~ 707 (1331)
+.+.+-.|....+..+.. .....+++|.|++.+.+. ++.-...+..++|+|||+.+..... -+.+.+..+.+.+
T Consensus 182 i~vmvttGGT~lrDDI~R--l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMR--LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred eEEEEecCCcccccceee--ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc
Confidence 888888888766654332 245789999999998764 2222223568999999999976553 4556676676788
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
..++.|||= . -+...|.. |.+++-
T Consensus 260 QillySATF-P------------------~tVk~Fm~------------------------------------~~l~kP- 283 (459)
T KOG0326|consen 260 QILLYSATF-P------------------LTVKGFMD------------------------------------RHLKKP- 283 (459)
T ss_pred eeeEEeccc-c------------------hhHHHHHH------------------------------------HhccCc-
Confidence 899999991 0 01222221 111110
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
.+..+.-+|+
T Consensus 284 -------y~INLM~eLt--------------------------------------------------------------- 293 (459)
T KOG0326|consen 284 -------YEINLMEELT--------------------------------------------------------------- 293 (459)
T ss_pred -------ceeehhhhhh---------------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
..++..-...+..+.|+..|..++.++.-+ ..||||+++...++|+.-+...|+.+..+|..|.++.|..+..+|.+
T Consensus 294 l~GvtQyYafV~e~qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~- 370 (459)
T KOG0326|consen 294 LKGVTQYYAFVEERQKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN- 370 (459)
T ss_pred hcchhhheeeechhhhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-
Confidence 001111223345577888888888887655 68999999999999999999999999999999999999999999994
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+.|+. |+||+...+|||+|++++||+||.+.|+..|++||||.+|+|.-- ..+.|++-
T Consensus 371 -G~crn-LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLity 428 (459)
T KOG0326|consen 371 -GKCRN-LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLITY 428 (459)
T ss_pred -cccce-eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEeh
Confidence 45565 889999999999999999999999999999999999999999643 44556654
No 103
>KOG4284|consensus
Probab=99.83 E-value=2.8e-20 Score=215.55 Aligned_cols=315 Identities=16% Similarity=0.224 Sum_probs=221.5
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC---C
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP---S 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p---~ 631 (1331)
...+.|..+|-.++. +..-|+-.-.|+|||++...++..-+.......-.+||+|+..+ -|....|.+.++ +
T Consensus 47 ~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 345679999987775 67789999999999998443333333333333447999999888 688888888877 5
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCc---chHHHHHHHHhccC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTFYVA 706 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~~~~ 706 (1331)
+++.+|.|+...... .......+|+|.|++.+... .+.+...+.+++|+|||+.+-.. .-.+..++..+...
T Consensus 123 ~~csvfIGGT~~~~d---~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLD---LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred cceEEEecCchhhhh---hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 788888888655433 23345667999999998763 45566667899999999999553 34566777888788
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
+..+.+|||=- .++.+ +|.++++.-+|-|.-.+
T Consensus 200 rQv~a~SATYp-~nLdn----------------------------------------------~Lsk~mrdp~lVr~n~~ 232 (980)
T KOG4284|consen 200 RQVAAFSATYP-RNLDN----------------------------------------------LLSKFMRDPALVRFNAD 232 (980)
T ss_pred heeeEEeccCc-hhHHH----------------------------------------------HHHHHhcccceeecccC
Confidence 99999999932 22222 22222221111111100
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhcc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHV 866 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 866 (1331)
--.-+.-+..+++.|.. +..
T Consensus 233 d~~L~GikQyv~~~~s~------------------------------------------------nns------------ 252 (980)
T KOG4284|consen 233 DVQLFGIKQYVVAKCSP------------------------------------------------NNS------------ 252 (980)
T ss_pred CceeechhheeeeccCC------------------------------------------------cch------------
Confidence 00001111111111111 100
Q ss_pred CCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcC
Q psy1544 867 GGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNA 946 (1331)
Q Consensus 867 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~ 946 (1331)
.-...-|++.|..++..+.-. ..||||....-++-|..+|...|+.+..|.|.|++.+|..+++.+++
T Consensus 253 ----------veemrlklq~L~~vf~~ipy~--QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 253 ----------VEEMRLKLQKLTHVFKSIPYV--QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred ----------HHHHHHHHHHHHHHHhhCchH--HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 001122566666666655433 68999999999999999999999999999999999999999999874
Q ss_pred CCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCC
Q psy1544 947 PDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKN 999 (1331)
Q Consensus 947 ~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k 999 (1331)
-.++ +||||+..++|||-..++.||++|++-+...|.+|||||+|+|..-
T Consensus 321 --f~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 --FRVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred --ceEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 3455 4999999999999999999999999999999999999999999765
No 104
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=2.1e-18 Score=214.18 Aligned_cols=400 Identities=17% Similarity=0.206 Sum_probs=219.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--CCc
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--SVN 633 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~~~ 633 (1331)
|+|||.+.+..++. +.|+|+...||.|||++++..+... ... +..++||+|+.-| .+|..++..++. ++.
T Consensus 69 lrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~-aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 69 MFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLN-ALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHH-hhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 68888887766653 4567999999999999976553222 221 2348999999866 666666644432 444
Q ss_pred EEEe-cCChh--HHHHHHHHhhccCccEEEeeHHHHHhc----c-----CcccccCccEEEEeCCcccCCcchHHHHHHH
Q psy1544 634 VVAY-KGSPH--LRKTLQAQMKASKFNVLLTTYEYVIKD----K-----GPLAKLHWKYMIIDEGHRMKNHHCKLTHILN 701 (1331)
Q Consensus 634 v~~~-~g~~~--~r~~~~~~~~~~~~~VvItTye~l~~~----~-----~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~ 701 (1331)
+.+. .++.. ...... .....++|+++|++.+..+ . ..+..-.+.++||||||.|.-..
T Consensus 142 v~~~~~~s~~~~~~~~~r--r~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe-------- 211 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEK--RKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS-------- 211 (762)
T ss_pred EEEEECCCCccccCHHHH--HHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc--------
Confidence 4443 33111 111111 1124689999999888321 1 11112357899999999863332
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCC------------------hhHHHHHhhccccccccccccCHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKS------------------VSTFEQWFNAPFATTGEKVELNEEE 763 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~------------------~~~F~~~f~~p~~~~~~~~~~~~~~ 763 (1331)
++..|++||.|-.. ..+|..++-+....-.. ...-.+.|..+ .+-...
T Consensus 212 ----artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--------~l~~~~ 277 (762)
T TIGR03714 212 ----AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--------NLYSEE 277 (762)
T ss_pred ----CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--------ccCChh
Confidence 34558899876433 34666654332221110 00011111100 000011
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhCCCceEEEEEcCCCH-------HHHHHHHHHHhhh-hhcccCcccccCCCcc
Q psy1544 764 TILIIRRLHKVLRP-FLLRRLKKEVESQLPDKVEYIIKCDMSG-------LQKVLYRHMHTKG-ILLTDGSEKGKQGKGG 834 (1331)
Q Consensus 764 ~~~~~~rL~~~L~p-~~lRR~k~~v~~~LP~k~e~~v~~~ls~-------~q~~lY~~i~~~~-~~~~~~~~~~~~~~~~ 834 (1331)
.....+.+...|+. +++.|.+.-+ +-+....+|- ..|. +..-+...+..+. +.+.... ......
T Consensus 278 ~~~~~~~i~~al~A~~~~~~d~dYi---V~~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~--~t~a~I- 350 (762)
T TIGR03714 278 YFELVRHINLALRAHYLFKRNKDYV---VTNGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKET--RAMASI- 350 (762)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCceE---EECCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCc--eeeeee-
Confidence 11222333333333 2222222211 1111111111 1111 1222222222211 1111100 000011
Q ss_pred hHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCC----------CcccCCc--cccccchhHHHHHhhhhhhcCCCeeE
Q psy1544 835 AKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGS----------GIVSGPD--LYRVSGKFELLDRILPKLKSTGHRVL 902 (1331)
Q Consensus 835 ~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~----------~~~~~~~--l~~~s~K~~~L~~lL~~l~~~g~KVL 902 (1331)
.+.|.+....++|.----....+..+....+.. .....++ ......|+..+.+.+..+...|..||
T Consensus 351 --t~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 351 --TYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVL 428 (762)
T ss_pred --eHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEE
Confidence 122222222233222111111122222222111 0011111 12346799999999988888899999
Q ss_pred EEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCC---------CCCEE
Q psy1544 903 LFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQ---------TADTV 973 (1331)
Q Consensus 903 IFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~---------~ad~V 973 (1331)
|||.++...+.|...|...|+++..++|.+...+|..+...|+. + . ++|+|+.+|+|+|+. +.++|
T Consensus 429 Ift~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g--~-VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--G--A-VTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--C--e-EEEEccccccccCCCCCccccccCCeEEE
Confidence 99999999999999999999999999999998888777666653 2 2 689999999999999 88999
Q ss_pred EEeCCCCCccccccccccccccCCCCceE
Q psy1544 974 IIFDSDWNPHQDLQAQDRAHRIGQKNEVR 1002 (1331)
Q Consensus 974 I~~D~~wNp~~~~QaiGRa~RiGQ~k~V~ 1002 (1331)
|.|+++-+... .|++||++|.|..-.+.
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 99999977655 99999999999776543
No 105
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.5e-20 Score=178.68 Aligned_cols=96 Identities=27% Similarity=0.405 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+.|..|++.|+++.. +++|..||+.. .+||||++|++||||+||++||+++.|.|+++|.+|+.+||.||+
T Consensus 2 ~~~c~~il~~l~~~~~------~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 75 (99)
T cd05506 2 MKQCGTLLRKLMKHKW------GWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAM 75 (99)
T ss_pred HHHHHHHHHHHHhCCC------CccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999998654 89999998865 789999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHH
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
.||++||.+|.+|..|++.|++.|
T Consensus 76 ~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 76 RYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999865
No 106
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=1.3e-18 Score=208.58 Aligned_cols=301 Identities=19% Similarity=0.302 Sum_probs=209.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCC--ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNL--NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~--~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p- 630 (1331)
.+|...|..++.-+..-+.... +-+|-.++|+|||++|+..+...+..+. -+.+.+|+.+| .|....|.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHHHHHHHHHhhh
Confidence 4788899999998876544433 3488888999999998777776666543 37899999999 889999999997
Q ss_pred -CCcEEEecCC--hhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc-C
Q psy1544 631 -SVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV-A 706 (1331)
Q Consensus 631 -~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~-~ 706 (1331)
++.|....|+ +..|+.....+..+..+|||-|+..+.....+ .+..+|||||=||+.-.. ...|...-. .
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV~Q---R~~L~~KG~~~ 411 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGVHQ---RLALREKGEQN 411 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---cceeEEEEeccccccHHH---HHHHHHhCCCC
Confidence 5677777776 44566677778889999999999988765543 346899999999986544 334444334 5
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
++.|.||||||...+.= - .|++. .-.
T Consensus 412 Ph~LvMTATPIPRTLAl----t------~fgDl--------------------------------------------dvS 437 (677)
T COG1200 412 PHVLVMTATPIPRTLAL----T------AFGDL--------------------------------------------DVS 437 (677)
T ss_pred CcEEEEeCCCchHHHHH----H------Hhccc--------------------------------------------cch
Confidence 79999999999776431 0 01100 011
Q ss_pred HhhhCCCceEEE--EEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544 787 VESQLPDKVEYI--IKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD 864 (1331)
Q Consensus 787 v~~~LP~k~e~~--v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 864 (1331)
+.+++|+...-+ ..+.. ..-..+|
T Consensus 438 ~IdElP~GRkpI~T~~i~~-~~~~~v~----------------------------------------------------- 463 (677)
T COG1200 438 IIDELPPGRKPITTVVIPH-ERRPEVY----------------------------------------------------- 463 (677)
T ss_pred hhccCCCCCCceEEEEecc-ccHHHHH-----------------------------------------------------
Confidence 233566542211 11111 1111111
Q ss_pred ccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHH--------HHHHHHHHHhc--CCeEEEEcCCCCH
Q psy1544 865 HVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQL--------MNILEDYFSYR--GFKYMRLDGTTKA 934 (1331)
Q Consensus 865 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~--------ld~L~~~L~~~--g~~~~~idG~~~~ 934 (1331)
.. +.+-...|+++.|.|...+. +..+...|... ++++..+||.|+.
T Consensus 464 -----------------------e~-i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 464 -----------------------ER-IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred -----------------------HH-HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCCh
Confidence 11 22222356666666655432 33344444422 6789999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCC-CCccccccccccccccCCCC
Q psy1544 935 EDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD-WNPHQDLQAQDRAHRIGQKN 999 (1331)
Q Consensus 935 ~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~-wNp~~~~QaiGRa~RiGQ~k 999 (1331)
+++++++.+|+++..+ +|+||.+...|+|+++|..+||.|.. +--++..|--||++|-+...
T Consensus 520 ~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 520 AEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred HHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 9999999999965544 59999999999999999999999995 78899999999999955444
No 107
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=5e-20 Score=177.34 Aligned_cols=97 Identities=25% Similarity=0.454 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
...+.|..|++.|.++.+ +++|..||+.. .+||||++|++||||++|++||.++.|.|+.+|..||+|||.|
T Consensus 4 ~~~~~~~~ii~~l~~~~~------a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKD------ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDN 77 (103)
T ss_pred HHHHHHHHHHHHHHcCCC------ChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456788999999998766 99999999865 7899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHH
Q psy1544 1295 AQIYNEELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1295 a~~YN~~~S~i~~~A~~L~~~f~~~ 1319 (1331)
|+.||++||.++.+|..|++.|++.
T Consensus 78 a~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 78 CLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 108
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=4.4e-18 Score=215.89 Aligned_cols=370 Identities=13% Similarity=0.074 Sum_probs=207.0
Q ss_pred ccCCccHHHHHHHHHHHHHhcC------CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNN------NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEF 625 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~------~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~ 625 (1331)
.+.-.|+||..||+.++..+.+ ..+||+.+.+|+|||++++.++..++.... ..++|||||.. |..||..+|
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-NPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-CCeEEEEECcHHHHHHHHHHH
Confidence 3455899999999999888654 357999999999999999999988875443 34599999985 559999999
Q ss_pred HHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc-C---ccccc-CccEEEEeCCcccCCcchHHHHHH
Q psy1544 626 ERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK-G---PLAKL-HWKYMIIDEGHRMKNHHCKLTHIL 700 (1331)
Q Consensus 626 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~-~---~l~~~-~~~~vIiDEaHrikn~~sk~~~~l 700 (1331)
..+.+..... .++ ...+..........|+|||.+.+.+.. . .+... ...+||+|||||.... .....+
T Consensus 314 ~~~~~~~~~~--~~s---~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~--~~~~~l 386 (667)
T TIGR00348 314 QSLQKDCAER--IES---IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG--ELAKNL 386 (667)
T ss_pred HhhCCCCCcc--cCC---HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch--HHHHHH
Confidence 9987532111 111 222333334445789999999997521 1 11111 2238999999996432 244556
Q ss_pred HHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy1544 701 NTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLL 780 (1331)
Q Consensus 701 ~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~l 780 (1331)
...+...++++|||||+...-.+-+..+. ..|..++.. . + +.
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~--------------~~fg~~i~~----Y--~----------~~-------- 428 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFA--------------YVFGRYLHR----Y--F----------IT-------- 428 (667)
T ss_pred HhhCCCCcEEEEeCCCccccccccccccc--------------CCCCCeEEE----e--e----------HH--------
Confidence 55567789999999998542111111110 001111000 0 0 00
Q ss_pred HHHHHHHhhh-CCCceEEEEEc--CCCHHH-HHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchh
Q psy1544 781 RRLKKEVESQ-LPDKVEYIIKC--DMSGLQ-KVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQ 856 (1331)
Q Consensus 781 RR~k~~v~~~-LP~k~e~~v~~--~ls~~q-~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 856 (1331)
.-+... +-+.....+.+ .++... ...++...... ... ........+......+..+..++....
T Consensus 429 ----~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~---~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~ 496 (667)
T TIGR00348 429 ----DAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL---PER-----IREITKESLKEKLQKTKKILFNEDRLE 496 (667)
T ss_pred ----HHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh---hcc-----ccHHHHHHHHHHHHHHHhhhcChHHHH
Confidence 000000 00111111111 111100 01111110000 000 000000111111111111211111110
Q ss_pred hhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhh-hcCCCeeEEEeccHHHHHHHHHHHHhc-----CCeEEEEcC
Q psy1544 857 NIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKL-KSTGHRVLLFCQMTQLMNILEDYFSYR-----GFKYMRLDG 930 (1331)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l-~~~g~KVLIFsq~~~~ld~L~~~L~~~-----g~~~~~idG 930 (1331)
. ....+.+-..+. ...+.|.+|||.++..+..+...|... +...+.++|
T Consensus 497 ~-------------------------ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~ 551 (667)
T TIGR00348 497 S-------------------------IAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTG 551 (667)
T ss_pred H-------------------------HHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecC
Confidence 0 111111111111 123579999999999998888887554 356677777
Q ss_pred CCCHH---------------------HHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccccc
Q psy1544 931 TTKAE---------------------DRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQ 989 (1331)
Q Consensus 931 ~~~~~---------------------eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~Qai 989 (1331)
+...+ ....++++|+++ +.+.+ ||+++...+|+|.+.++++++.-+--+ +..+|++
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~i-lIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai 628 (667)
T TIGR00348 552 KESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPKL-LIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAI 628 (667)
T ss_pred CccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCceE-EEEEcccccccCCCccceEEEeccccc-cHHHHHH
Confidence 65433 234789999853 45555 677799999999999999999888765 4589999
Q ss_pred cccccc-CCCC-ceEEEEEee
Q psy1544 990 DRAHRI-GQKN-EVRVLRLMT 1008 (1331)
Q Consensus 990 GRa~Ri-GQ~k-~V~V~rli~ 1008 (1331)
||+.|+ +..| ...|+.++.
T Consensus 629 ~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 629 ARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHhccccCCCCCCEEEEECcC
Confidence 999995 5444 477777765
No 109
>PRK09401 reverse gyrase; Reviewed
Probab=99.81 E-value=1.5e-18 Score=228.87 Aligned_cols=297 Identities=15% Similarity=0.164 Sum_probs=192.6
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~ 631 (1331)
+|..++++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||||+..| .||...|.+++..
T Consensus 77 ~G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 466899999999987774 788899999999999755544443322 24559999999666 8999999998754
Q ss_pred C--cEEEecCCh----hHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc------------
Q psy1544 632 V--NVVAYKGSP----HLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH------------ 693 (1331)
Q Consensus 632 ~--~v~~~~g~~----~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~------------ 693 (1331)
. .+.+..|.. ..+......+..+.++|+|+|++++.+....+....+++|||||||+|-...
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 3 333333322 2233333344456799999999999987666666679999999999985311
Q ss_pred --hHHHHHHHHhcc------------------------CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhh
Q psy1544 694 --CKLTHILNTFYV------------------------APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFN 747 (1331)
Q Consensus 694 --sk~~~~l~~~~~------------------------~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~ 747 (1331)
..+..++..+.. ....+++|||.-.......
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~----------------------- 286 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK----------------------- 286 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH-----------------------
Confidence 112222222110 2345667777432111100
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCccc
Q psy1544 748 APFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEK 827 (1331)
Q Consensus 748 ~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~ 827 (1331)
++..+.. . ...
T Consensus 287 --------------------------------------------------------------l~~~ll~--~-~v~---- 297 (1176)
T PRK09401 287 --------------------------------------------------------------LFRELLG--F-EVG---- 297 (1176)
T ss_pred --------------------------------------------------------------Hhhccce--E-Eec----
Confidence 0000000 0 000
Q ss_pred ccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEecc
Q psy1544 828 GKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQM 907 (1331)
Q Consensus 828 ~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~ 907 (1331)
... . .++.+. |-| +....|...|..++..+ |..+||||+.
T Consensus 298 -~~~-~----------~~rnI~-~~y------------------------i~~~~k~~~L~~ll~~l---~~~~LIFv~t 337 (1176)
T PRK09401 298 -SPV-F----------YLRNIV-DSY------------------------IVDEDSVEKLVELVKRL---GDGGLIFVPS 337 (1176)
T ss_pred -Ccc-c----------ccCCce-EEE------------------------EEcccHHHHHHHHHHhc---CCCEEEEEec
Confidence 000 0 000000 000 00113666677777554 3579999998
Q ss_pred HHH---HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEee----ccccccccCCCC-CCEEEEeCCC
Q psy1544 908 TQL---MNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS----TRAGGLGLNLQT-ADTVIIFDSD 979 (1331)
Q Consensus 908 ~~~---ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS----T~aggeGLNL~~-ad~VI~~D~~ 979 (1331)
... ++.|..+|...|+++..+||++ ...+++|.+ +.+.| ||+ |+++++|||++. +++|||||.|
T Consensus 338 ~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~--G~~~V-LVatas~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE--GEVDV-LVGVASYYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred ccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC--CCCCE-EEEecCCCCceeecCCCCcceeEEEEeCCC
Confidence 776 9999999999999999999999 234699985 44555 555 799999999999 8999999999
Q ss_pred C------CccccccccccccccC
Q psy1544 980 W------NPHQDLQAQDRAHRIG 996 (1331)
Q Consensus 980 w------Np~~~~QaiGRa~RiG 996 (1331)
- ....+.+++||+..+-
T Consensus 410 ~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 410 KFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CEEEeccccccCHHHHHHHHhhc
Confidence 8 6677889999987443
No 110
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=214.74 Aligned_cols=336 Identities=21% Similarity=0.191 Sum_probs=220.0
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhc-CC---CCcEEEEeCCccH-HHHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKK-KV---NGPFLIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~-~~---~~p~LIV~P~sll-~qW~~E~~k 627 (1331)
..+|+|+|..++..+.+ |.|+++..+||+|||..|+. ++..+.... +. .-.+|-|.|...| ......+..
T Consensus 20 ~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 45899999999988874 99999999999999999765 444555552 11 1248999999877 446666666
Q ss_pred HcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc------CcccccCccEEEEeCCcccCCcc--hHHH
Q psy1544 628 WAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK------GPLAKLHWKYMIIDEGHRMKNHH--CKLT 697 (1331)
Q Consensus 628 ~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~------~~l~~~~~~~vIiDEaHrikn~~--sk~~ 697 (1331)
|+. ++.+-+-+|..... ..+.+....+||+|||++.+.-.. ..|. +..+|||||.|.+.+.. ++++
T Consensus 96 ~~~~~G~~v~vRhGDT~~~--er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQS--EKQKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHHcCCccceecCCCChH--HhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhh
Confidence 653 55666666664332 233455678999999999885432 2233 45789999999997644 4555
Q ss_pred HHHHHhc---cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHH
Q psy1544 698 HILNTFY---VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 774 (1331)
Q Consensus 698 ~~l~~~~---~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~ 774 (1331)
-.+..+. ....|++||||- .++.++ ..||.+.-. + ..-+..
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~----~~Iv~~--------------- 215 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------P----CEIVDV--------------- 215 (814)
T ss_pred hhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------c----eEEEEc---------------
Confidence 4444432 246799999994 233333 233311100 0 000000
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
....+.+..|.+.-.
T Consensus 216 ---------------~~~k~~~i~v~~p~~-------------------------------------------------- 230 (814)
T COG1201 216 ---------------SAAKKLEIKVISPVE-------------------------------------------------- 230 (814)
T ss_pred ---------------ccCCcceEEEEecCC--------------------------------------------------
Confidence 000000110100000
Q ss_pred hhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy1544 855 FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRG-FKYMRLDGTTK 933 (1331)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g-~~~~~idG~~~ 933 (1331)
++.....-...+...+..+......+|||++.+.++..+...|...+ ..+..-|||.+
T Consensus 231 ---------------------~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlS 289 (814)
T COG1201 231 ---------------------DLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLS 289 (814)
T ss_pred ---------------------ccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccccc
Confidence 00000111122333344444444589999999999999999999886 89999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccc-cccCCCCceEEEEEeeCCCH
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA-HRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa-~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
.+.|..+-++|+++ ..++ ++||.....|||+-.+|.||.|.+|-+.....||+||+ ||+|....- ++++.+ .
T Consensus 290 re~R~~vE~~lk~G--~lra-vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r 362 (814)
T COG1201 290 RELRLEVEERLKEG--ELKA-VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-R 362 (814)
T ss_pred HHHHHHHHHHHhcC--CceE-EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-H
Confidence 99999999999954 4555 88999999999999999999999999999999999999 566654443 344555 5
Q ss_pred HHHHHHHHHHHHHH
Q psy1544 1013 EERILAAARYKLNM 1026 (1331)
Q Consensus 1013 EE~I~~~~~~K~~l 1026 (1331)
++.+-..+..+..+
T Consensus 363 ~dllE~~vi~~~a~ 376 (814)
T COG1201 363 DDLLECLVLADLAL 376 (814)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555554444433
No 111
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.4e-17 Score=208.94 Aligned_cols=131 Identities=17% Similarity=0.226 Sum_probs=110.0
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
....|+..|...+......+.+|||||.++..++.|...|...|+++..++|.+...++..+...|.. +. ++|||
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEc
Confidence 44678999999988877789999999999999999999999999999999999998888777777663 22 68999
Q ss_pred cccccccCC---CCCC-----EEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHH
Q psy1544 959 RAGGLGLNL---QTAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAA 1019 (1331)
Q Consensus 959 ~aggeGLNL---~~ad-----~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~ 1019 (1331)
+.+|+|+|+ +.+. +||+||.+-|+..|.|++||++|.|..-.+.. |+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 999999999 5777 99999999999999999999999998765433 33 235555543
No 112
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=1.5e-19 Score=180.19 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcC-CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK-ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~-~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..+..|..+++.|. +..++..+++|..||+.. .+||||++|++||||+||++||.++.|+|+++|..||.|||.||
T Consensus 24 ~~~~~i~~~l~~l~---~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 24 EERERLISGLDKLL---LSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred HHHHHHHHHHHHHH---hcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34444444555444 335678899999999999 99999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQ 1321 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~ 1321 (1331)
++||+++|.++.+|..|+++|...+.
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 113
>KOG0332|consensus
Probab=99.80 E-value=9.7e-19 Score=192.72 Aligned_cols=316 Identities=19% Similarity=0.267 Sum_probs=196.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCC--
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSV-- 632 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~-- 632 (1331)
+....|..++--|+. ....|-|--...|+|||......+..........--++.|+|+.-+ .|-..-+.+.+...
T Consensus 112 kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~i 189 (477)
T KOG0332|consen 112 KPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTEL 189 (477)
T ss_pred CcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceee
Confidence 444566666665553 3344556667789999975322222111111111225677999877 44444444433222
Q ss_pred cE-EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCccccc---CccEEEEeCCcccCCcc---hHHHHHHHHhcc
Q psy1544 633 NV-VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKL---HWKYMIIDEGHRMKNHH---CKLTHILNTFYV 705 (1331)
Q Consensus 633 ~v-~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~---~~~~vIiDEaHrikn~~---sk~~~~l~~~~~ 705 (1331)
.. +++.|+...|. ..-..+|+|-|+..+.+....|..+ ...++|+|||..|-+.. -...++.+.+.+
T Consensus 190 ta~yair~sk~~rG------~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 190 TASYAIRGSKAKRG------NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred eEEEEecCcccccC------CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 21 33334421111 1123579999999887754443322 56899999999996654 233444555545
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
....+++|||=. + ....| .
T Consensus 264 ~~QllLFSATf~----e---------------~V~~F------------------------------------a------ 282 (477)
T KOG0332|consen 264 NQQLLLFSATFV----E---------------KVAAF------------------------------------A------ 282 (477)
T ss_pred cceEEeeechhH----H---------------HHHHH------------------------------------H------
Confidence 778899999920 0 00011 1
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
..-+|+.....++-+- -.+..+.+|--.|.+
T Consensus 283 --~kivpn~n~i~Lk~ee---------------------------------l~L~~IkQlyv~C~~-------------- 313 (477)
T KOG0332|consen 283 --LKIVPNANVIILKREE---------------------------------LALDNIKQLYVLCAC-------------- 313 (477)
T ss_pred --HHhcCCCceeeeehhh---------------------------------ccccchhhheeeccc--------------
Confidence 1112322222221000 001112222223322
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
...|+++|..+. .+..-| ..||||+.+.++.+|...|...|..+..+||.+..++|..++++|+
T Consensus 314 --------------~~~K~~~l~~ly-g~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr 377 (477)
T KOG0332|consen 314 --------------RDDKYQALVNLY-GLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR 377 (477)
T ss_pred --------------hhhHHHHHHHHH-hhhhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh
Confidence 134777777743 333333 6899999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeccccccccCCCCCCEEEEeCCCC------CccccccccccccccCCCCceEEEEEeeCC
Q psy1544 946 APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW------NPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 946 ~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w------Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.+... +||+|.++++|||.+.++.||+||+|- .+..|++||||++|+|.+- .++.|+-.+
T Consensus 378 ~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG--~a~n~v~~~ 443 (477)
T KOG0332|consen 378 EGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG--LAINLVDDK 443 (477)
T ss_pred cCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc--eEEEeeccc
Confidence 65443 599999999999999999999999985 6788999999999999654 444565443
No 114
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.79 E-value=2.2e-18 Score=227.36 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=84.2
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcC---------------------------------CeEEEEcCCCCHHHHHHHHHH
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRG---------------------------------FKYMRLDGTTKAEDRGDLLKK 943 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g---------------------------------~~~~~idG~~~~~eR~~~i~~ 943 (1331)
.+.++||||+.+..++.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 45689999999999999998887531 124678899999999999999
Q ss_pred hcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccccccccccc
Q psy1544 944 FNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 995 (1331)
Q Consensus 944 Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~Ri 995 (1331)
|++ +.+. +||||++++.|||+..+|+||+|++|.+...++||+||++|.
T Consensus 323 fK~--G~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS--GELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh--CCce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 995 4455 589999999999999999999999999999999999999985
No 115
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.79 E-value=9e-18 Score=209.78 Aligned_cols=328 Identities=15% Similarity=0.184 Sum_probs=196.4
Q ss_pred ccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHH---------HHH---hcCCCCcEEEEeCCccH
Q psy1544 551 ILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITY---------LME---KKKVNGPFLIIVPLSTL 618 (1331)
Q Consensus 551 ~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~---------l~~---~~~~~~p~LIV~P~sll 618 (1331)
.+....|++.|...-+.++..+..+...|+..+||+|||.+.-.++.+ .+. .....++++|++|...+
T Consensus 155 ~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreL 234 (675)
T PHA02653 155 PFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVAL 234 (675)
T ss_pred ccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHH
Confidence 445567898888888888888888999999999999999874322221 111 12234579999999766
Q ss_pred -HHHHHHHHHHc-----CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc
Q psy1544 619 -SNWSLEFERWA-----PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH 692 (1331)
Q Consensus 619 -~qW~~E~~k~~-----p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~ 692 (1331)
.|...++.+.. .+..+.+..|+.... .. .......+++|+|..... ..| .++++|||||||.+...
T Consensus 235 a~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~-~~--~t~~k~~~Ilv~T~~L~l---~~L--~~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 235 VRLHSITLLKSLGFDEIDGSPISLKYGSIPDE-LI--NTNPKPYGLVFSTHKLTL---NKL--FDYGTVIIDEVHEHDQI 306 (675)
T ss_pred HHHHHHHHHHHhCccccCCceEEEEECCcchH-Hh--hcccCCCCEEEEeCcccc---ccc--ccCCEEEccccccCccc
Confidence 67777776543 233444444443211 00 111225689999854211 112 25789999999998665
Q ss_pred chHHHHHHHHhcc-CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 693 HCKLTHILNTFYV-APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 693 ~sk~~~~l~~~~~-~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
...+...+..... .++.+++|||.-. ....+ ..+|..+.. +...
T Consensus 307 ~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l------------------~~~~~~p~~-----I~I~----------- 351 (675)
T PHA02653 307 GDIIIAVARKHIDKIRSLFLMTATLED-DRDRI------------------KEFFPNPAF-----VHIP----------- 351 (675)
T ss_pred hhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH------------------HHHhcCCcE-----EEeC-----------
Confidence 5444444433322 2467999999621 11111 111111100 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
...+.+.....+.....+.++..|-
T Consensus 352 ----------------grt~~pV~~~yi~~~~~~~~~~~y~--------------------------------------- 376 (675)
T PHA02653 352 ----------------GGTLFPISEVYVKNKYNPKNKRAYI--------------------------------------- 376 (675)
T ss_pred ----------------CCcCCCeEEEEeecCcccccchhhh---------------------------------------
Confidence 0000111111111110000000000
Q ss_pred ccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhh-hcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEE
Q psy1544 852 PFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKL-KSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRL 928 (1331)
Q Consensus 852 p~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l-~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~i 928 (1331)
...|..++ ..+... ...+..+|||+.....++.+...|... ++.+..+
T Consensus 377 ----------------------------~~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~L 427 (675)
T PHA02653 377 ----------------------------EEEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYII 427 (675)
T ss_pred ----------------------------HHHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEec
Confidence 00011111 112111 123568999999999999999999887 7999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeC---CC---------CCccccccccccccccC
Q psy1544 929 DGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFD---SD---------WNPHQDLQAQDRAHRIG 996 (1331)
Q Consensus 929 dG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D---~~---------wNp~~~~QaiGRa~RiG 996 (1331)
||++++. ++.+++|.. ++... +|+||+++++|||++++++||.++ .+ .+...+.||.||++|.
T Consensus 428 HG~Lsq~--eq~l~~ff~-~gk~k-ILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 428 HGKVPNI--DEILEKVYS-SKNPS-IIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred cCCcCHH--HHHHHHHhc-cCcee-EEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 9999964 567788731 23344 589999999999999999999997 22 2666889999999998
Q ss_pred CCCceEEEEEeeCCCH
Q psy1544 997 QKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 997 Q~k~V~V~rli~~~Ti 1012 (1331)
++-.+|+|++....
T Consensus 503 --~~G~c~rLyt~~~~ 516 (675)
T PHA02653 503 --SPGTYVYFYDLDLL 516 (675)
T ss_pred --CCCeEEEEECHHHh
Confidence 45788888888764
No 116
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.3e-17 Score=201.46 Aligned_cols=130 Identities=15% Similarity=0.242 Sum_probs=106.0
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|...|..++..+...+..|||||.++..++.|...|...|+++..|||.+. +|+..+..|....+. ++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 456899999999887777889999999999999999999999999999999865 566666666533333 689999
Q ss_pred ccccccCCC---CCC-----EEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHH
Q psy1544 960 AGGLGLNLQ---TAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAA 1019 (1331)
Q Consensus 960 aggeGLNL~---~ad-----~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~ 1019 (1331)
++|+|+|+. .+. +||+||.+-|...|.|++||++|.|..-.+. .|++ .|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~is---~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AILS---LEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEec---hhHHHHHh
Confidence 999999998 444 9999999999999999999999999765433 3333 35555543
No 117
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=4.8e-18 Score=209.54 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=105.8
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRA 960 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a 960 (1331)
..|+..+.+.+..+...|..|||||.+....+.|...|...|+++..++|. +.+|+..|..|....+ .++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g---~VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKG---AVTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCc---eEEEEecc
Confidence 468888888888888999999999999999999999999999999999998 7799999999974333 36999999
Q ss_pred cccccCCCC-------CCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 961 GGLGLNLQT-------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 961 ggeGLNL~~-------ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+|+|+|+.. .-+||+++.+-|...+.|++||++|.|..-....
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 999999988 6699999999999999999999999998765443
No 118
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=2.6e-18 Score=207.77 Aligned_cols=354 Identities=17% Similarity=0.215 Sum_probs=217.9
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCc-eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLN-GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAP 630 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~-gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 630 (1331)
....+|.||..+|+.+.+.+.++.+ .+|++.||+|||.+||++|..|+..+..++ +|+++-. +++.|-...|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KR-VLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKR-VLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhhe-eeEEechHHHHHHHHHHHHHhCC
Confidence 4457999999999999998876654 789999999999999999999998877665 9999976 566888889999999
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc-------CcccccCccEEEEeCCcccCCcchHHHHHHHHh
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK-------GPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTF 703 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~-------~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~ 703 (1331)
............ ....+.|.|+||.++.... ..+....||+||||||||-- .++ ++.+..+
T Consensus 241 ~~~~~n~i~~~~---------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi--~~~-~~~I~dY 308 (875)
T COG4096 241 FGTKMNKIEDKK---------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI--YSE-WSSILDY 308 (875)
T ss_pred Cccceeeeeccc---------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH--Hhh-hHHHHHH
Confidence 766554333221 1225799999999998642 23444479999999999841 111 2233334
Q ss_pred ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 704 YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 783 (1331)
Q Consensus 704 ~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~ 783 (1331)
+ ...+++|||||-..--.+-+.+++ ..|.... + +
T Consensus 309 F-dA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Y------s----------------------l 342 (875)
T COG4096 309 F-DAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAY------S----------------------L 342 (875)
T ss_pred H-HHHHHhhccCcccccccccccccC-----------------CCcceee------c----------------------H
Confidence 3 346677899996532211122111 1111100 0 1
Q ss_pred HHHHhhh--CCCceE-EEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHh
Q psy1544 784 KKEVESQ--LPDKVE-YIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEE 860 (1331)
Q Consensus 784 k~~v~~~--LP~k~e-~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 860 (1331)
+.-|... .|.+.. ..+.+....+ -|....+.. .+ -.+..+. .+
T Consensus 343 eeAV~DGfLvpy~vi~i~~~~~~~G~---~~~~~sere------------------k~------~g~~i~~-------dd 388 (875)
T COG4096 343 EEAVEDGFLVPYKVIRIDTDFDLDGW---KPDAGSERE------------------KL------QGEAIDE-------DD 388 (875)
T ss_pred HHHhhccccCCCCceEEeeeccccCc---CcCccchhh------------------hh------hccccCc-------cc
Confidence 1111111 232211 1111211110 000000000 00 0000000 00
Q ss_pred hhhhccCCCCcccCCccccccchhHHHHHhhhhhhcC---C---CeeEEEeccHHHHHHHHHHHHhc-----CCeEEEEc
Q psy1544 861 KFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKST---G---HRVLLFCQMTQLMNILEDYFSYR-----GFKYMRLD 929 (1331)
Q Consensus 861 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~---g---~KVLIFsq~~~~ld~L~~~L~~~-----g~~~~~id 929 (1331)
...+ ....+.........+.+.+.+..+... | .|+||||....+++.|...|... |--+..|+
T Consensus 389 ~~~~------~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 389 QNFE------ARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred cccc------ccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0000 000000111122334455555444433 3 49999999999999999999865 33467788
Q ss_pred CCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccC-------CCCc-e
Q psy1544 930 GTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG-------QKNE-V 1001 (1331)
Q Consensus 930 G~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiG-------Q~k~-V 1001 (1331)
|..... +..|+.|-. ...+-.|.+|.+.+..|+|.+.|-.+||+-.-.+-..+.|.+||+-|+. |.|. .
T Consensus 463 ~d~~~~--q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F 539 (875)
T COG4096 463 GDAEQA--QALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFF 539 (875)
T ss_pred ccchhh--HHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeE
Confidence 877644 566888875 3455567899999999999999999999999999999999999999953 3344 6
Q ss_pred EEEEEee
Q psy1544 1002 RVLRLMT 1008 (1331)
Q Consensus 1002 ~V~rli~ 1008 (1331)
.||.++-
T Consensus 540 ~ifDf~~ 546 (875)
T COG4096 540 TIFDFVD 546 (875)
T ss_pred EEEEhhh
Confidence 7776653
No 119
>KOG0346|consensus
Probab=99.78 E-value=3.3e-18 Score=191.85 Aligned_cols=315 Identities=17% Similarity=0.229 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcCCC----C-cEEEEeCCccH-HHHHHHHHHH---
Q psy1544 559 EYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKKVN----G-PFLIIVPLSTL-SNWSLEFERW--- 628 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~~~----~-p~LIV~P~sll-~qW~~E~~k~--- 628 (1331)
-.|..+|-.+++ +.+.+.-.-||+|||.. +|-++..++..+... + ..+|+||+..| .|....|.+.
T Consensus 44 lIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~ 119 (569)
T KOG0346|consen 44 LIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEY 119 (569)
T ss_pred hhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 358888887775 77778888999999998 566777776654331 2 36999999766 5656666553
Q ss_pred cC-CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--c-ccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 629 AP-SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--P-LAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 629 ~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~-l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
++ .++++-+..+.. ............+|||+|+..+..... . .......++|+|||+-+...+ -.+......
T Consensus 120 c~k~lr~~nl~s~~s--dsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~ 197 (569)
T KOG0346|consen 120 CSKDLRAINLASSMS--DSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSH 197 (569)
T ss_pred HHHhhhhhhhhcccc--hHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHh
Confidence 43 344443332211 122224456788999999999887632 2 222356899999999886544 233334444
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 782 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR 782 (1331)
+.+.-..+++|||-- .| +..|.+
T Consensus 198 LPr~~Q~~LmSATl~----dD--------------------------------------------v~~LKk--------- 220 (569)
T KOG0346|consen 198 LPRIYQCFLMSATLS----DD--------------------------------------------VQALKK--------- 220 (569)
T ss_pred CCchhhheeehhhhh----hH--------------------------------------------HHHHHH---------
Confidence 444455688888821 00 111111
Q ss_pred HHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhh
Q psy1544 783 LKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKF 862 (1331)
Q Consensus 783 ~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~ 862 (1331)
.+|+.|..+.-.+...
T Consensus 221 ----------------------------------------------------------------L~l~nPviLkl~e~el 236 (569)
T KOG0346|consen 221 ----------------------------------------------------------------LFLHNPVILKLTEGEL 236 (569)
T ss_pred ----------------------------------------------------------------HhccCCeEEEeccccC
Confidence 1122222211111100
Q ss_pred hhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHH
Q psy1544 863 SDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942 (1331)
Q Consensus 863 ~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~ 942 (1331)
. +........-.+..-.|+.+|..+|+--.-. .|+|||.+..+.+..|.-+|..-|++.+.+.|.++...|..+|+
T Consensus 237 ~---~~dqL~Qy~v~cse~DKflllyallKL~LI~-gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~ 312 (569)
T KOG0346|consen 237 P---NPDQLTQYQVKCSEEDKFLLLYALLKLRLIR-GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIE 312 (569)
T ss_pred C---CcccceEEEEEeccchhHHHHHHHHHHHHhc-CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHH
Confidence 0 0000000001122345888887777543333 38999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeecc--------------------------c---------cccccCCCCCCEEEEeCCCCCcccccc
Q psy1544 943 KFNAPDSEYFIFVLSTR--------------------------A---------GGLGLNLQTADTVIIFDSDWNPHQDLQ 987 (1331)
Q Consensus 943 ~Fn~~~~~~~v~LlST~--------------------------a---------ggeGLNL~~ad~VI~~D~~wNp~~~~Q 987 (1331)
+||. +-|. +||+|+ . .++|||++.+++||+||.|-++..|++
T Consensus 313 QFNk--G~Yd-ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIH 389 (569)
T KOG0346|consen 313 QFNK--GLYD-IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIH 389 (569)
T ss_pred HhhC--ccee-EEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHH
Confidence 9994 3444 477777 1 258999999999999999999999999
Q ss_pred ccccccccCCCCceEEEEEeeC
Q psy1544 988 AQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 988 aiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
|+||+.|-|.+-. +.-||..
T Consensus 390 RvGRTaRg~n~Gt--alSfv~P 409 (569)
T KOG0346|consen 390 RVGRTARGNNKGT--ALSFVSP 409 (569)
T ss_pred hccccccCCCCCc--eEEEecc
Confidence 9999999887664 4445544
No 120
>KOG1474|consensus
Probab=99.78 E-value=4.3e-19 Score=221.80 Aligned_cols=106 Identities=27% Similarity=0.406 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
...+-+.|..||..|+.++. +|+|..||+.. .+||||+|||+||||+|||+|+.++.|.+..+|.+||+|||
T Consensus 220 ~~~~lk~C~~iLk~l~~~k~------awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F 293 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKHKH------AWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTF 293 (640)
T ss_pred cHHHHHHHHHHHHHHHhccC------CCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHH
Confidence 34566889999999999887 79999999996 55999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQRVESG 1326 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~ 1326 (1331)
.||++||.+|++||.+|..|+++|+..|..+...
T Consensus 294 ~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~ 327 (640)
T KOG1474|consen 294 DNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLE 327 (640)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999987643
No 121
>smart00297 BROMO bromo domain.
Probab=99.77 E-value=1.2e-18 Score=170.19 Aligned_cols=101 Identities=40% Similarity=0.633 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+...|..|++.+.+ ++++++|..||++..+||||++|++||||++|++||++|.|.|+++|..||.+||.||.
T Consensus 7 ~~~~~~~~i~~~~~~------~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T smart00297 7 KLQSLLKAVLDKLDS------HRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAK 80 (107)
T ss_pred HHHHHHHHHHHHHHh------CccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 445555555555544 46799999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
.||++||.+|.+|..|++.|++.++++
T Consensus 81 ~~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 81 TYNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998763
No 122
>KOG0334|consensus
Probab=99.77 E-value=9e-18 Score=207.68 Aligned_cols=317 Identities=21% Similarity=0.314 Sum_probs=217.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhc---CCCCc-EEEEeCCccH-HH---HHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKK---KVNGP-FLIIVPLSTL-SN---WSLE 624 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~---~~~~p-~LIV~P~sll-~q---W~~E 624 (1331)
..+.+|.|.+++-.+++ +..+|-...+|+|||+..+. .+.+.+... ...|| .||+||+.-+ .| |.+-
T Consensus 385 y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 55789999999988886 88999999999999998643 333322221 12355 6999999766 44 5555
Q ss_pred HHHHcCCCcE-EEecCChhHHHHHHHHhhccCccEEEeeHHHHHh----ccCccccc-CccEEEEeCCccc--CCcchHH
Q psy1544 625 FERWAPSVNV-VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIK----DKGPLAKL-HWKYMIIDEGHRM--KNHHCKL 696 (1331)
Q Consensus 625 ~~k~~p~~~v-~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~----~~~~l~~~-~~~~vIiDEaHri--kn~~sk~ 696 (1331)
|.+.. ++.+ .+|.|+. ....+. .++.+ ..|+|+|.+.++. ..+.+..+ +..+||+|||+|| +...-+.
T Consensus 461 f~k~l-~ir~v~vygg~~-~~~qia-elkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~ 536 (997)
T KOG0334|consen 461 FLKLL-GIRVVCVYGGSG-ISQQIA-ELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQI 536 (997)
T ss_pred HHhhc-CceEEEecCCcc-HHHHHH-HHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCccc
Confidence 55553 4444 4555544 333332 23334 8899999887764 33444333 5679999999998 4455566
Q ss_pred HHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHH
Q psy1544 697 THILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR 776 (1331)
Q Consensus 697 ~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~ 776 (1331)
+.++..+..-+..++.|||=.. -+|+
T Consensus 537 ~~Ii~nlrpdrQtvlfSatfpr----~m~~-------------------------------------------------- 562 (997)
T KOG0334|consen 537 TRILQNLRPDRQTVLFSATFPR----SMEA-------------------------------------------------- 562 (997)
T ss_pred chHHhhcchhhhhhhhhhhhhH----HHHH--------------------------------------------------
Confidence 6677666455666777777210 0111
Q ss_pred HHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchh
Q psy1544 777 PFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQ 856 (1331)
Q Consensus 777 p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 856 (1331)
+...|.. +| . +.+| . |+.+... -+.+
T Consensus 563 ------la~~vl~-~P-v-eiiv--~--------~~svV~k-----------------------~V~q------------ 588 (997)
T KOG0334|consen 563 ------LARKVLK-KP-V-EIIV--G--------GRSVVCK-----------------------EVTQ------------ 588 (997)
T ss_pred ------HHHHhhc-CC-e-eEEE--c--------cceeEec-----------------------cceE------------
Confidence 1111211 22 1 1111 1 0000000 0000
Q ss_pred hhHhhhhhccCCCCcccCCcccc-ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHH
Q psy1544 857 NIEEKFSDHVGGSGIVSGPDLYR-VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAE 935 (1331)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~l~~-~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~ 935 (1331)
.-.++. ...|+..|.++|...... .++||||+....++.|.+-|...|+.+..+||+.++.
T Consensus 589 -----------------~v~V~~~e~eKf~kL~eLl~e~~e~-~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~ 650 (997)
T KOG0334|consen 589 -----------------VVRVCAIENEKFLKLLELLGERYED-GKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQH 650 (997)
T ss_pred -----------------EEEEecCchHHHHHHHHHHHHHhhc-CCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchH
Confidence 001111 366999999999887775 4899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 936 DRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 936 eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+|..+|.+|+++. ..+|++|++++.|||......||+||.+--...|.+|.||++|.|-+- ..|.|+..
T Consensus 651 dR~sti~dfK~~~---~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 651 DRSSTIEDFKNGV---VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred HHHhHHHHHhccC---ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999533 347999999999999999999999999999999999999999999877 55556665
No 123
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.76 E-value=5.3e-17 Score=192.23 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=71.9
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRG--FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI 974 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g--~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI 974 (1331)
.+.++||||+....++.+...|...| +.+..++|.+++.+|.+.. .. .+|++|+++++|||+... +||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~-~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QF-DILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cC-CEEEEecHHhcccCCCCc-eEE
Confidence 56799999999999999999999864 6788999999999987653 11 269999999999999864 666
Q ss_pred EeCCCCCcccccccccccc
Q psy1544 975 IFDSDWNPHQDLQAQDRAH 993 (1331)
Q Consensus 975 ~~D~~wNp~~~~QaiGRa~ 993 (1331)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 678899999999985
No 124
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=1.8e-16 Score=209.67 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=96.1
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~ 631 (1331)
.+..+.++|..++..++. +.+.++..+||+|||..++.++.++... ...+|||+|+..| .|+...|.+++..
T Consensus 75 ~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~~---g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAKK---GKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred cCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 455899999999987774 7788999999999998666555544332 3459999999766 8899999988753
Q ss_pred C--c---EEEecCChhHHH--HHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC
Q psy1544 632 V--N---VVAYKGSPHLRK--TLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 632 ~--~---v~~~~g~~~~r~--~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn 691 (1331)
. . +.+|+|...... .....+..+.++|+|+|+.++.+....+.. .+++|||||||+|-.
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 2 2 234666533322 222334456799999999999876555544 799999999999954
No 125
>KOG0344|consensus
Probab=99.74 E-value=4.1e-17 Score=190.81 Aligned_cols=317 Identities=17% Similarity=0.258 Sum_probs=209.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHH-HHHHHHHHhc----CCCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTI-ALITYLMEKK----KVNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai-~li~~l~~~~----~~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
....|.|..++-.+++ +.+++-+.++|+|||+.-+ -++..|.... ..+-..+||.|+..| .|-..|+.++
T Consensus 157 ~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 157 DEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 3677889999988885 8889999999999999844 4555555444 334468999999666 8889999988
Q ss_pred c--CC--CcEEEecCC--hhHHHHHHHHhhccCccEEEeeHHHHHhccCc----ccccCccEEEEeCCcccCCcch---H
Q psy1544 629 A--PS--VNVVAYKGS--PHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP----LAKLHWKYMIIDEGHRMKNHHC---K 695 (1331)
Q Consensus 629 ~--p~--~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~----l~~~~~~~vIiDEaHrikn~~s---k 695 (1331)
. ++ ..+..+... +..+. .......+++++.|+..+....+. +.-....++|+|||+++.+... +
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~---a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Q 309 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKP---AFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQ 309 (593)
T ss_pred CCCCCCchhhhhcccccchhhcc---chhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHH
Confidence 7 32 222222222 21111 112234689999999998876543 3333567799999999988722 2
Q ss_pred HHHHHHHhcc-CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHH
Q psy1544 696 LTHILNTFYV-APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 774 (1331)
Q Consensus 696 ~~~~l~~~~~-~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~ 774 (1331)
+..++..+.. .-++=++|||- +...|=|+.+..
T Consensus 310 la~I~sac~s~~i~~a~FSat~--~~~VEE~~~~i~-------------------------------------------- 343 (593)
T KOG0344|consen 310 LADIYSACQSPDIRVALFSATI--SVYVEEWAELIK-------------------------------------------- 343 (593)
T ss_pred HHHHHHHhcCcchhhhhhhccc--cHHHHHHHHHhh--------------------------------------------
Confidence 3333333211 11223455551 111111111100
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
.+. ..|.+...+.+ ++.+.|=-..|
T Consensus 344 ----------~~~---------~~vivg~~~sa-------------------------------~~~V~QelvF~----- 368 (593)
T KOG0344|consen 344 ----------SDL---------KRVIVGLRNSA-------------------------------NETVDQELVFC----- 368 (593)
T ss_pred ----------ccc---------eeEEEecchhH-------------------------------hhhhhhhheee-----
Confidence 000 00111111111 11111100000
Q ss_pred hhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHH-HhcCCeEEEEcCCCC
Q psy1544 855 FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYF-SYRGFKYMRLDGTTK 933 (1331)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L-~~~g~~~~~idG~~~ 933 (1331)
....+|+-.+..++...... .+|||.|+.+.+..|...| ...++++..|||..+
T Consensus 369 -----------------------gse~~K~lA~rq~v~~g~~P--P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 369 -----------------------GSEKGKLLALRQLVASGFKP--PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERS 423 (593)
T ss_pred -----------------------ecchhHHHHHHHHHhccCCC--CeEEEEecHHHHHHHHHHhhhccCcceeeEecccc
Confidence 01246777777777765544 7999999999999999999 788999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+.+|...+++|+. +.++| |+||++.++|||+.+++.||+||.+-+-..|++||||++|.|+... .|.|++.
T Consensus 424 ~~qrde~~~~FR~--g~Iwv-LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 424 QKQRDETMERFRI--GKIWV-LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hhHHHHHHHHHhc--cCeeE-EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 9999999999994 56776 8999999999999999999999999999999999999999998764 4445555
No 126
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.73 E-value=5.1e-16 Score=197.25 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=106.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc-HHHHHHHHHHHcCCCcE
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST-LSNWSLEFERWAPSVNV 634 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~v 634 (1331)
.|.++|.+++..+.... .+...+|...||+|||.+.+.++...+.. ++.+|||||+.. ..||...|.++++ ..+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v 218 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-APV 218 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CCE
Confidence 69999999999887643 34567899999999999988877766654 245999999964 4999999998874 567
Q ss_pred EEecCChhHH--HHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc--ch-----HHHHHHHHhcc
Q psy1544 635 VAYKGSPHLR--KTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH--HC-----KLTHILNTFYV 705 (1331)
Q Consensus 635 ~~~~g~~~~r--~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~--~s-----k~~~~l~~~~~ 705 (1331)
.+++|..... .........+..+|||+|...+.. .-.++++|||||+|...-. .. .....++....
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 7777664332 222233445678999999987642 1235789999999986321 11 11112222234
Q ss_pred CCceeeeccCCC
Q psy1544 706 APHRLLLTGTPL 717 (1331)
Q Consensus 706 ~~~rllLTgTPl 717 (1331)
....+++||||.
T Consensus 294 ~~~~il~SATps 305 (679)
T PRK05580 294 NIPVVLGSATPS 305 (679)
T ss_pred CCCEEEEcCCCC
Confidence 567899999994
No 127
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=1.3e-16 Score=204.72 Aligned_cols=333 Identities=18% Similarity=0.224 Sum_probs=224.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC----
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP---- 630 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p---- 630 (1331)
.|+.||.++++.+.+ +.+.|+...||+|||.+.+..|...+...... ..|+|-|+..| ....+.|.+|..
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999998875 89999999999999999665555444443333 58999999777 668888888763
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc------cCcccccCccEEEEeCCcccCCc-chHHHHHHHHh
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD------KGPLAKLHWKYMIIDEGHRMKNH-HCKLTHILNTF 703 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~------~~~l~~~~~~~vIiDEaHrikn~-~sk~~~~l~~~ 703 (1331)
.+.+..|+|.....+. ..+.....+|++|||+|+.-. ...+..-++.+|||||+|..++. +|.+.-.++++
T Consensus 145 ~v~~~~y~Gdt~~~~r--~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 145 KVTFGRYTGDTPPEER--RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred cceeeeecCCCChHHH--HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 4677888887543322 245567899999999998642 11122225899999999999764 34444333333
Q ss_pred c---c----CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHH-Hhhccccc-cccccccCHHHHHHHHHHHHHH
Q psy1544 704 Y---V----APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQ-WFNAPFAT-TGEKVELNEEETILIIRRLHKV 774 (1331)
Q Consensus 704 ~---~----~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~-~f~~p~~~-~~~~~~~~~~~~~~~~~rL~~~ 774 (1331)
. + ....++.|||- ++..+|.. .+...|.. ..+
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~v~~------------------- 263 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVPVDE------------------- 263 (851)
T ss_pred HHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceeeccC-------------------
Confidence 2 2 45668899993 22222221 11111111 000
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
..-|....+++.-.. |..
T Consensus 264 --------------~g~~~~~~~~~~~~p------------------------------------------------~~~ 281 (851)
T COG1205 264 --------------DGSPRGLRYFVRREP------------------------------------------------PIR 281 (851)
T ss_pred --------------CCCCCCceEEEEeCC------------------------------------------------cch
Confidence 001111111111000 000
Q ss_pred hhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHH----HHHHhcC----CeEE
Q psy1544 855 FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILE----DYFSYRG----FKYM 926 (1331)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~----~~L~~~g----~~~~ 926 (1331)
... .. ....+...+..++..+...|-++|+|+.+...+..+. ..+...+ ..+.
T Consensus 282 ~~~------------------~~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~ 342 (851)
T COG1205 282 ELA------------------ES-IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVS 342 (851)
T ss_pred hhh------------------hh-cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhhee
Confidence 000 00 0124556667777777888999999999999998886 3344445 6789
Q ss_pred EEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-CccccccccccccccCCCCceEEEE
Q psy1544 927 RLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRVLR 1005 (1331)
Q Consensus 927 ~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w-Np~~~~QaiGRa~RiGQ~k~V~V~r 1005 (1331)
.+.|++...+|..+...|+.++.. ++++|.+...|+|+.+.+.||.+.-|- +...+.|+.||++|-||.- .++.
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~ 417 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLV 417 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEE
Confidence 999999999999999999965544 689999999999999999999999998 8899999999999999443 3333
Q ss_pred EeeCCCHHHHHHHHH
Q psy1544 1006 LMTVNSVEERILAAA 1020 (1331)
Q Consensus 1006 li~~~TiEE~I~~~~ 1020 (1331)
..-.+.++...+..-
T Consensus 418 v~~~~~~d~yy~~~p 432 (851)
T COG1205 418 VLRSDPLDSYYLRHP 432 (851)
T ss_pred EeCCCccchhhhhCc
Confidence 344777887765443
No 128
>KOG0327|consensus
Probab=99.73 E-value=4.3e-17 Score=182.10 Aligned_cols=317 Identities=18% Similarity=0.250 Sum_probs=217.1
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH-HHHHHHHHcCC--C
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN-WSLEFERWAPS--V 632 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k~~p~--~ 632 (1331)
+....|..||.-.+. +.+.+.-...|+|||.+....+...+.......-+||++|++.|.+ -..-+..++.. .
T Consensus 48 kPSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 555679998877774 8888888899999999855555554433333334799999999854 44444555543 4
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccC--CcchHHHHHHHHhccCCc
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMK--NHHCKLTHILNTFYVAPH 708 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrik--n~~sk~~~~l~~~~~~~~ 708 (1331)
.+....|....+... ..+.....+|++.|++.+..- ...|......+.|+|||..+. +...+++..+..+....+
T Consensus 124 ~v~~~igg~~~~~~~-~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQ 202 (397)
T KOG0327|consen 124 SVHACIGGTNVRRED-QALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQ 202 (397)
T ss_pred eeeeecCcccchhhh-hhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchh
Confidence 555445544333222 223445678999999887653 345666678999999999984 555678888888777788
Q ss_pred eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1544 709 RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 788 (1331)
Q Consensus 709 rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~ 788 (1331)
.+++|||-- .++. +-++
T Consensus 203 v~l~SAT~p----~~vl-------------------------------------------------------~vt~---- 219 (397)
T KOG0327|consen 203 VVLLSATMP----SDVL-------------------------------------------------------EVTK---- 219 (397)
T ss_pred heeecccCc----HHHH-------------------------------------------------------HHHH----
Confidence 899999931 1110 0000
Q ss_pred hhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCC
Q psy1544 789 SQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGG 868 (1331)
Q Consensus 789 ~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 868 (1331)
.++.... .+.+.-.+.+ |.-+- +-|
T Consensus 220 -~f~~~pv-~i~vkk~~lt-------------------------------------l~gik-q~~--------------- 244 (397)
T KOG0327|consen 220 -KFMREPV-RILVKKDELT-------------------------------------LEGIK-QFY--------------- 244 (397)
T ss_pred -HhccCce-EEEecchhhh-------------------------------------hhhee-eee---------------
Confidence 0110000 0101000000 00000 000
Q ss_pred CCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCC
Q psy1544 869 SGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPD 948 (1331)
Q Consensus 869 ~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~ 948 (1331)
.-..-..|+..|..+.. .-...+|||+...-++.|...|..+|+....+||.+.+.+|..+++.|+.+.
T Consensus 245 -------i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs 313 (397)
T KOG0327|consen 245 -------INVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS 313 (397)
T ss_pred -------eeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC
Confidence 00001127777777776 2236899999999999999999999999999999999999999999999655
Q ss_pred CCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 949 SEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 949 ~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
+. +||+|+..++|+|++.++.||+||.|-|...|++|+||++|.|-+- .+..+++..+
T Consensus 314 sr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~d 371 (397)
T KOG0327|consen 314 SR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEED 371 (397)
T ss_pred ce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHhh
Confidence 54 5999999999999999999999999999999999999999999544 5666777653
No 129
>PRK14701 reverse gyrase; Provisional
Probab=99.72 E-value=4.5e-16 Score=209.50 Aligned_cols=303 Identities=15% Similarity=0.211 Sum_probs=190.1
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP- 630 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p- 630 (1331)
+|.++++.|..++..++. +.+.++..+||+|||+..+.++..+.. ....+|||+|+..| .|....|..++.
T Consensus 76 ~G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 76 TGFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred hCCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 344799999999998885 778899999999999843333332221 12359999999665 889899988764
Q ss_pred ---CCcEEEecCChhHHHH--HHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC-------------c
Q psy1544 631 ---SVNVVAYKGSPHLRKT--LQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN-------------H 692 (1331)
Q Consensus 631 ---~~~v~~~~g~~~~r~~--~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn-------------~ 692 (1331)
++.+..++|+...... ....+..+.++|+|+|++.+......+...+++++||||||+|-. .
T Consensus 149 ~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF 228 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGF 228 (1638)
T ss_pred cCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCC
Confidence 3456667776443322 223344567999999999887654434346789999999999843 1
Q ss_pred chHHHH----HHH----------------------HhccCCc-eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHH
Q psy1544 693 HCKLTH----ILN----------------------TFYVAPH-RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQW 745 (1331)
Q Consensus 693 ~sk~~~----~l~----------------------~~~~~~~-rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~ 745 (1331)
...... .+. .+...+. .++.|||.-.. .+...++
T Consensus 229 ~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~----------------- 289 (1638)
T PRK14701 229 YEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY----------------- 289 (1638)
T ss_pred hHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh-----------------
Confidence 111111 111 0001111 23456664210 0000000
Q ss_pred hhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCc
Q psy1544 746 FNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGS 825 (1331)
Q Consensus 746 f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~ 825 (1331)
+ +. .. +.+..
T Consensus 290 ------------------------------~---------~~-------l~--f~v~~---------------------- 299 (1638)
T PRK14701 290 ------------------------------R---------EL-------LG--FEVGS---------------------- 299 (1638)
T ss_pred ------------------------------h---------cC-------eE--EEecC----------------------
Confidence 0 00 00 00000
Q ss_pred ccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEe
Q psy1544 826 EKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFC 905 (1331)
Q Consensus 826 ~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFs 905 (1331)
. ... ++.+. |.|.. .....| ..|.+++..+ |..+||||
T Consensus 300 ~--~~~-------------lr~i~-~~yi~----------------------~~~~~k-~~L~~ll~~~---g~~gIVF~ 337 (1638)
T PRK14701 300 G--RSA-------------LRNIV-DVYLN----------------------PEKIIK-EHVRELLKKL---GKGGLIFV 337 (1638)
T ss_pred C--CCC-------------CCCcE-EEEEE----------------------CCHHHH-HHHHHHHHhC---CCCeEEEE
Confidence 0 000 00000 00000 000112 3455666544 56799999
Q ss_pred ccHHH---HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec----cccccccCCCC-CCEEEEeC
Q psy1544 906 QMTQL---MNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST----RAGGLGLNLQT-ADTVIIFD 977 (1331)
Q Consensus 906 q~~~~---ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST----~aggeGLNL~~-ad~VI~~D 977 (1331)
+.... ++.|..+|...|+++..+||+ |...+++|.+++ +.| ||+| +++++|||++. +.+|||||
T Consensus 338 ~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~--~~V-LVaT~s~~gvaaRGIDiP~~Vryvi~~~ 409 (1638)
T PRK14701 338 PIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGE--IDY-LIGVATYYGTLVRGLDLPERIRFAVFYG 409 (1638)
T ss_pred eccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCC--CCE-EEEecCCCCeeEecCccCCccCEEEEeC
Confidence 98764 589999999999999999995 899999999644 444 7777 57899999998 99999999
Q ss_pred CCC---Ccccccccc-------------ccccccCCCCce
Q psy1544 978 SDW---NPHQDLQAQ-------------DRAHRIGQKNEV 1001 (1331)
Q Consensus 978 ~~w---Np~~~~Qai-------------GRa~RiGQ~k~V 1001 (1331)
.|- |...+.|.. ||++|-|..-+.
T Consensus 410 ~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 410 VPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred CCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 998 777777776 999998875443
No 130
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.71 E-value=1.7e-16 Score=200.83 Aligned_cols=310 Identities=21% Similarity=0.216 Sum_probs=195.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc-CCCc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA-PSVN 633 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~-p~~~ 633 (1331)
+|++.|..+|...+. .+.|.|++.+||+|||++|...|...+..+ +++++.|||+.-| .+-..+|.+|- -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 799999999975553 378999999999999999887776655544 5679999999555 77788888543 3789
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--cccccCccEEEEeCCcccCCcc------hHHHHHHHHhcc
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--PLAKLHWKYMIIDEGHRMKNHH------CKLTHILNTFYV 705 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaHrikn~~------sk~~~~l~~~~~ 705 (1331)
|.++.|+...... ...+++|+||||+.+-.-.. ..-....++|||||+|.+.... +-.++.. ....
T Consensus 106 V~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~-~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR-RLNE 179 (766)
T ss_pred EEEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH-hhCc
Confidence 9999998764432 34678999999998753211 1122257999999999996652 1222222 2212
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
.-+.++||||- .|.. ++-.|.+...... ..+|.-++|.
T Consensus 180 ~~rivgLSATl--pN~~------------------evA~wL~a~~~~~--------------------~~rp~~l~~~-- 217 (766)
T COG1204 180 LIRIVGLSATL--PNAE------------------EVADWLNAKLVES--------------------DWRPVPLRRG-- 217 (766)
T ss_pred ceEEEEEeeec--CCHH------------------HHHHHhCCccccc--------------------CCCCcccccC--
Confidence 24778999993 2333 3333433321000 0000000000
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
.|... .+..+ .+..
T Consensus 218 -----v~~~~-~~~~~----------------------------~~~~-------------------------------- 231 (766)
T COG1204 218 -----VPYVG-AFLGA----------------------------DGKK-------------------------------- 231 (766)
T ss_pred -----Cccce-EEEEe----------------------------cCcc--------------------------------
Confidence 00000 00000 0000
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh----c--------------------
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY----R-------------------- 921 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~----~-------------------- 921 (1331)
. .....+...+..++....+.|..||||++++......+..|.. .
T Consensus 232 ----------k-~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~ 300 (766)
T COG1204 232 ----------K-TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPE 300 (766)
T ss_pred ----------c-cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccccc
Confidence 0 0011223444455555667888999999998776665555552 0
Q ss_pred -------------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE----EeC-----CC
Q psy1544 922 -------------GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI----IFD-----SD 979 (1331)
Q Consensus 922 -------------g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI----~~D-----~~ 979 (1331)
-..+..-|.+++.++|.-+-+.|+ ++.+.| |+||...+.|+||++=..|| .|| -+
T Consensus 301 ~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr--~g~ikV-lv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~ 377 (766)
T COG1204 301 TPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR--KGKIKV-LVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVD 377 (766)
T ss_pred ccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh--cCCceE-EEechHHhhhcCCcceEEEEeeeEEEcCCCCeEE
Confidence 012456678999999999999998 456665 89999999999999644333 244 23
Q ss_pred CCccccccccccccccCCC
Q psy1544 980 WNPHQDLQAQDRAHRIGQK 998 (1331)
Q Consensus 980 wNp~~~~QaiGRa~RiGQ~ 998 (1331)
-++..+.|..|||+|.|=.
T Consensus 378 i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 378 IPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred CchhhHhhccCcCCCCCcC
Confidence 3577889999999998843
No 131
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=3.3e-17 Score=157.09 Aligned_cols=98 Identities=19% Similarity=0.230 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccc-----CcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1221 TLKKIMRVVIKYTDSDGRVLSEPFIKLP-----SRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1221 ~~~~i~~~l~~~~d~~gr~~~~~F~~~p-----~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
.|..++..+...... +.+|..++ .+..+||||++|++||||+||++||++|.|+++++|..||.|||+||
T Consensus 4 ~L~f~~~~~k~~lp~-----~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~ 78 (109)
T cd05492 4 LLKFIVSRMKSWLPP-----DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNT 78 (109)
T ss_pred hHHHHHHHHHhcCcc-----cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 455666666665443 45666665 44579999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
..||+++|.+|..|..|-+-...-+.++
T Consensus 79 ~~yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 79 AIFHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887777665
No 132
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.71 E-value=3.4e-16 Score=200.26 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=91.3
Q ss_pred CCeeEEEeccHHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSY---RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI 974 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~---~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI 974 (1331)
+..+|||+.....++.+...|.. .++.++.+||+++.++|..+++.|.. +..+ +||||++++.||+++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~--G~rk-VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ--GRRK-VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc--CCeE-EEEecchHhhcccccCceEEE
Confidence 45799999999999999999986 48999999999999999999999974 3344 589999999999999999999
Q ss_pred EeCCC----CCccc--------------cccccccccccCCCCceEEEEEeeCC
Q psy1544 975 IFDSD----WNPHQ--------------DLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 975 ~~D~~----wNp~~--------------~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.++.+ |||.. +.||.||++|. ++-.+|+|++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99875 45554 67999999997 466778888754
No 133
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.71 E-value=2.3e-17 Score=158.21 Aligned_cols=97 Identities=40% Similarity=0.674 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
...|..|++.+..+. +..+.+|..+|++..+|+||.+|++||||++|++|+.+|.|.++.+|.+||.+||.||+.|
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~ 77 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356888888888863 3569999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy1544 1299 NEELSLIHEDSVVLESVFTKA 1319 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~~ 1319 (1331)
|+.||.++.+|..|+..|.+.
T Consensus 78 n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 78 NGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 134
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.71 E-value=2.4e-17 Score=153.44 Aligned_cols=84 Identities=37% Similarity=0.643 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy1544 1222 LKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEE 1301 (1331)
Q Consensus 1222 ~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~ 1301 (1331)
|..|++.|+++. .+++|..+|+...+|+|+++|++||||++|++|+.+|.|.++++|..||.+||.||..||++
T Consensus 1 C~~il~~l~~~~------~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~ 74 (84)
T PF00439_consen 1 CREILEELMKHP------ISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPP 74 (84)
T ss_dssp HHHHHHHHHTST------TGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHcCC------CchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 678899998865 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q psy1544 1302 LSLIHEDSVV 1311 (1331)
Q Consensus 1302 ~S~i~~~A~~ 1311 (1331)
||.+|.+|.+
T Consensus 75 ~s~~~~~A~~ 84 (84)
T PF00439_consen 75 DSPIYKAAEK 84 (84)
T ss_dssp TSHHHHHHHH
T ss_pred cCHHHHHhcC
Confidence 9999999974
No 135
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.4e-15 Score=186.72 Aligned_cols=297 Identities=19% Similarity=0.212 Sum_probs=183.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCCCcEEEecCChh--HHHHHHHHhhccC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPSVNVVAYKGSPH--LRKTLQAQMKASK 655 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v~~~~g~~~--~r~~~~~~~~~~~ 655 (1331)
+|..+||+|||.+.+.++...+..+ +.+|||+|.. +..|+...|.+.++ ..+.++++... .+.........+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 3566899999999988887776543 3599999995 55899999998774 45666776533 2333333345667
Q ss_pred ccEEEeeHHHHHhccCcccccCccEEEEeCCcccC--Ccch-----HHHHHHHHhccCCceeeeccCCCCCChHHHHHHH
Q psy1544 656 FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMK--NHHC-----KLTHILNTFYVAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 656 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrik--n~~s-----k~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
.+|||+|...+.. .+ .++++|||||.|... .... .-...+.........|++||||. ++.++...
T Consensus 77 ~~IVVGTrsalf~---p~--~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs---les~~~~~ 148 (505)
T TIGR00595 77 ILVVIGTRSALFL---PF--KNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS---LESYHNAK 148 (505)
T ss_pred CCEEECChHHHcC---cc--cCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC---HHHHHHHh
Confidence 8999999987742 22 257999999999873 2211 11122233334567899999995 21111110
Q ss_pred hhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHH
Q psy1544 729 NFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQK 808 (1331)
Q Consensus 729 ~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~ 808 (1331)
+ +.+ . ...+ -+|.. ...+|. ..++ +|.
T Consensus 149 ~----g~~----------~--------~~~l--------------------~~r~~---~~~~p~--v~vi--d~~---- 175 (505)
T TIGR00595 149 Q----KAY----------R--------LLVL--------------------TRRVS---GRKPPE--VKLI--DMR---- 175 (505)
T ss_pred c----CCe----------E--------Eeec--------------------hhhhc---CCCCCe--EEEE--ecc----
Confidence 0 000 0 0000 00000 000110 0000 000
Q ss_pred HHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHH
Q psy1544 809 VLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLD 888 (1331)
Q Consensus 809 ~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~ 888 (1331)
+. . ..+.--..|.
T Consensus 176 --------------------------------------~~-----------------~------------~~~~ls~~l~ 188 (505)
T TIGR00595 176 --------------------------------------KE-----------------P------------RQSFLSPELI 188 (505)
T ss_pred --------------------------------------cc-----------------c------------ccCCccHHHH
Confidence 00 0 0000112345
Q ss_pred HhhhhhhcCCCeeEEEeccHH-----------------------------------------------------------
Q psy1544 889 RILPKLKSTGHRVLLFCQMTQ----------------------------------------------------------- 909 (1331)
Q Consensus 889 ~lL~~l~~~g~KVLIFsq~~~----------------------------------------------------------- 909 (1331)
+.+.+..+.|+.||||.+.+.
T Consensus 189 ~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g 268 (505)
T TIGR00595 189 TAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKG 268 (505)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeec
Confidence 555566667788888843221
Q ss_pred -HHHHHHHHHHhc--CCeEEEEcCCCCHHHH--HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC--C-
Q psy1544 910 -LMNILEDYFSYR--GFKYMRLDGTTKAEDR--GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW--N- 981 (1331)
Q Consensus 910 -~ld~L~~~L~~~--g~~~~~idG~~~~~eR--~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w--N- 981 (1331)
-.+.++..|... +.++.++|+.++..++ ..+++.|.+++.+ +||+|...+.|+|++.++.|+++|.+- +
T Consensus 269 ~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~ 345 (505)
T TIGR00595 269 YGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHS 345 (505)
T ss_pred ccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccC
Confidence 146777777766 8899999999987766 8999999864444 589999999999999999998776652 2
Q ss_pred c---------cccccccccccccCCCCceEEEEEeeCC
Q psy1544 982 P---------HQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 982 p---------~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
| ..+.|+.||++|.+....|.|..+-..+
T Consensus 346 pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 346 PDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred cccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 3 5689999999998887777655444433
No 136
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.69 E-value=3.9e-17 Score=193.81 Aligned_cols=113 Identities=33% Similarity=0.545 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....+.+.+..|+..+....+.+|+.++++|+.+|++..+||||.+|+.||||.+|++||+.+.|+++++|..||.|||+
T Consensus 139 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 139 EDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred cchhHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 44567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVESG 1326 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~ 1326 (1331)
||.+||++||.||.+|..|++.|...+..+...
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999977653
No 137
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.67 E-value=1.7e-15 Score=194.35 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=90.5
Q ss_pred CCeeEEEeccHHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSY---RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI 974 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~---~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI 974 (1331)
+..+|||+.....++.+...|.. .++.++.+||+++.++|..++..|.. +.. -+|+||++++.||++.++++||
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~--G~r-kVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA--GRR-KVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC--CCe-EEEEecchHHhcccccCceEEE
Confidence 45899999999999999999986 58899999999999999999999974 333 4699999999999999999999
Q ss_pred EeCCC----CCc--------------cccccccccccccCCCCceEEEEEeeCC
Q psy1544 975 IFDSD----WNP--------------HQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 975 ~~D~~----wNp--------------~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.++.. |+| ..+.||.||++|. .+-.+|+|+++.
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~ 339 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKE 339 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHH
Confidence 97755 332 2589999999997 367888888764
No 138
>KOG0337|consensus
Probab=99.67 E-value=7.3e-16 Score=172.63 Aligned_cols=317 Identities=17% Similarity=0.190 Sum_probs=217.8
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--C
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQT-IALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--S 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~a-i~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 631 (1331)
+..|.|.+.+.-+++ +...+--.-||+|||..- |-.+..|.......-+.||+.|+.-| .|-..-++.++- +
T Consensus 43 ~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~ 118 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTK 118 (529)
T ss_pred CCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccc
Confidence 456778888877765 555555567999999874 45556665555444578999999877 443333333332 3
Q ss_pred CcEE-EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--cccccCccEEEEeCCccc--CCcchHHHHHHHHhccC
Q psy1544 632 VNVV-AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--PLAKLHWKYMIIDEGHRM--KNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 632 ~~v~-~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--~l~~~~~~~vIiDEaHri--kn~~sk~~~~l~~~~~~ 706 (1331)
++.. +|.|..-. +.+. ....+.|||++|+..+.-... .|.--...|||+|||.++ .++..++...+..+..+
T Consensus 119 lr~s~~~ggD~~e-eqf~--~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~ 195 (529)
T KOG0337|consen 119 LRQSLLVGGDSIE-EQFI--LLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES 195 (529)
T ss_pred hhhhhhcccchHH-HHHH--HhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCc
Confidence 4444 44444322 2211 234578999999988754322 123335689999999999 44667788899888888
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
...+++|||- .+.+.| |..-+.
T Consensus 196 ~QTllfSatl-p~~lv~------fakaGl--------------------------------------------------- 217 (529)
T KOG0337|consen 196 RQTLLFSATL-PRDLVD------FAKAGL--------------------------------------------------- 217 (529)
T ss_pred ceEEEEeccC-chhhHH------HHHccC---------------------------------------------------
Confidence 8999999993 121111 110000
Q ss_pred HhhhCCCceEE-EEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 787 VESQLPDKVEY-IIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 787 v~~~LP~k~e~-~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
.|+.... .|.-..++ ..+++
T Consensus 218 ----~~p~lVRldvetkise------------------------------------~lk~~------------------- 238 (529)
T KOG0337|consen 218 ----VPPVLVRLDVETKISE------------------------------------LLKVR------------------- 238 (529)
T ss_pred ----CCCceEEeehhhhcch------------------------------------hhhhh-------------------
Confidence 0111000 00000000 00000
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
...++...|..+|..++..... ..+.+||+.....+.++...|...|+.+..+.|++.+.-|..-+.+|+
T Consensus 239 ---------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 239 ---------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred ---------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 0112345688888888876554 357999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 946 APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 946 ~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
..... +|++|++|++|+|++-.++||+||.|-.+..+.+|+||+.|.|.+- ..|-||+.+-
T Consensus 309 ~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~~ 369 (529)
T KOG0337|consen 309 GRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVASTD 369 (529)
T ss_pred CCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEeccc
Confidence 65444 7999999999999999999999999999999999999999999654 6777777653
No 139
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.66 E-value=1.3e-14 Score=183.52 Aligned_cols=312 Identities=18% Similarity=0.220 Sum_probs=213.5
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCC--ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNL--NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~--~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
+...-.|-|..+|+-+..=+.++. .-+||.++|-|||=+|+-.+-.....+ +-|.|+||+.+| .|..+.|..-+
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHHHHHHHHHHh
Confidence 344677889999999887665554 348999999999998875544333222 349999999999 66667776555
Q ss_pred CCCcEE--Eec--CChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc
Q psy1544 630 PSVNVV--AYK--GSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV 705 (1331)
Q Consensus 630 p~~~v~--~~~--g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~ 705 (1331)
.++.|. +.. -+....+.+...+..+..||||-|+..+.++..+ .+..+|||||=||+.-.. -..|+.+..
T Consensus 668 ~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGVk~---KEkLK~Lr~ 741 (1139)
T COG1197 668 AGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGVKH---KEKLKELRA 741 (1139)
T ss_pred cCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcCccH---HHHHHHHhc
Confidence 444332 222 2333445556667889999999999999877653 245899999999986544 344555556
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
.-.+|-|||||+...+.= +|... + .-+
T Consensus 742 ~VDvLTLSATPIPRTL~M--sm~Gi--------------------------------------R-------------dlS 768 (1139)
T COG1197 742 NVDVLTLSATPIPRTLNM--SLSGI--------------------------------------R-------------DLS 768 (1139)
T ss_pred cCcEEEeeCCCCcchHHH--HHhcc--------------------------------------h-------------hhh
Confidence 778999999999876431 10000 0 000
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
.+ .-||.....|..-..+.
T Consensus 769 vI--~TPP~~R~pV~T~V~~~----------------------------------------------------------- 787 (1139)
T COG1197 769 VI--ATPPEDRLPVKTFVSEY----------------------------------------------------------- 787 (1139)
T ss_pred hc--cCCCCCCcceEEEEecC-----------------------------------------------------------
Confidence 00 12332222221111000
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHH
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAEDRGDLLKK 943 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~eR~~~i~~ 943 (1331)
+ -.-+=..++.++ .+|..|-...+.++.+..+...|+.. ..++.+.||.|+..+-+.++..
T Consensus 788 --------d--------~~~ireAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~ 850 (1139)
T COG1197 788 --------D--------DLLIREAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLD 850 (1139)
T ss_pred --------C--------hHHHHHHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHH
Confidence 0 000011223333 34557888888888899999988876 6789999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccccCCCCCCEEEEeCCC-CCccccccccccccccCCCCceEEEEEeeC
Q psy1544 944 FNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 944 Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~-wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
|.++ .+.| |+||.....|||+++|||+|+-+.+ +-.++..|--||++|-. +.-+.|.++..
T Consensus 851 F~~g--~~dV-Lv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 851 FYNG--EYDV-LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred HHcC--CCCE-EEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 9854 4445 8888899999999999999999886 68899999999999954 45677777765
No 140
>COG4889 Predicted helicase [General function prediction only]
Probab=99.66 E-value=5.1e-16 Score=184.95 Aligned_cols=158 Identities=24% Similarity=0.289 Sum_probs=103.6
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHc-CC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWA-PS 631 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~-p~ 631 (1331)
..+|||||..++....+.+..+..|=|.+.+|+|||.+++-+...+.. ..+|.+||. ++|+|-.+|+..-. -.
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 358999999999999999988888988888999999999988877754 348999999 77787666554321 01
Q ss_pred CcE-EEec-------------------CChhHHHHHHH---HhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCC
Q psy1544 632 VNV-VAYK-------------------GSPHLRKTLQA---QMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEG 686 (1331)
Q Consensus 632 ~~v-~~~~-------------------g~~~~r~~~~~---~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEa 686 (1331)
+.. .++. -+.+.+..+.. ..+..+.-||++||+.+..- .....--.||+||+|||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 111 1111 11122222222 22345667999999988543 22233347999999999
Q ss_pred cccCCcc------hHHHHH-HHHhccCCceeeeccCC
Q psy1544 687 HRMKNHH------CKLTHI-LNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 687 Hrikn~~------sk~~~~-l~~~~~~~~rllLTgTP 716 (1331)
||--+.. +..++. -....++.+||-+||||
T Consensus 314 HRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 314 HRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred hccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9974321 111110 00112566889999999
No 141
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=4e-14 Score=177.34 Aligned_cols=406 Identities=15% Similarity=0.143 Sum_probs=227.5
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH----HHHHHHHHH
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL----SNWSLEFER 627 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k 627 (1331)
.+|-..++-|+-|.--| +.|-|.-..||.|||+++...+......+ ..++||+|+..| .+|...|.+
T Consensus 78 ~lg~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 78 TLGLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred HcCCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 45556777788776544 34568889999999998654443222222 238999999877 457777777
Q ss_pred HcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHH----HhccCcccc-----cCccEEEEeCCcccCCcchHHHH
Q psy1544 628 WAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYV----IKDKGPLAK-----LHWKYMIIDEGHRMKNHHCKLTH 698 (1331)
Q Consensus 628 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l----~~~~~~l~~-----~~~~~vIiDEaHrikn~~sk~~~ 698 (1331)
++ ++.+.++.|......... .-..+|+++|...+ .++.-.+.. -.+.++||||||+|.-.
T Consensus 149 ~l-GLtv~~i~gg~~~~~r~~----~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLID------ 217 (896)
T PRK13104 149 FL-GLTVGVIYPDMSHKEKQE----AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILID------ 217 (896)
T ss_pred cc-CceEEEEeCCCCHHHHHH----HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhh------
Confidence 76 466666666533222211 12579999999887 333322211 26899999999976322
Q ss_pred HHHHhccCCceeeeccCCCCCChHHHHHHHhhh----cCCCCCChhHHHHHhhccccccccccccCHHHH----------
Q psy1544 699 ILNTFYVAPHRLLLTGTPLQNKLPELWALLNFL----LPSIFKSVSTFEQWFNAPFATTGEKVELNEEET---------- 764 (1331)
Q Consensus 699 ~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL----~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~---------- 764 (1331)
.++--|++||.+- ...++|..++.+ ......... ..|. +......+.+++...
T Consensus 218 ------eArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~---~dy~--idek~~~v~Lte~G~~~~e~~~~~~ 284 (896)
T PRK13104 218 ------EARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDE---GDYT--IDEKQKQAHLTDAGHLHIEELLTKA 284 (896)
T ss_pred ------ccCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCC---CCEE--EEcCCCceEEchHHHHHHHHHHHhC
Confidence 2445578888653 224455544433 221000000 0000 000011111222111
Q ss_pred --------------HHHHHHHHHHHHHH-HHHHHHHHHhhhCCCceEEEEEcCCCH-------HHHHHHHHHHhhh-hhc
Q psy1544 765 --------------ILIIRRLHKVLRPF-LLRRLKKEVESQLPDKVEYIIKCDMSG-------LQKVLYRHMHTKG-ILL 821 (1331)
Q Consensus 765 --------------~~~~~rL~~~L~p~-~lRR~k~~v~~~LP~k~e~~v~~~ls~-------~q~~lY~~i~~~~-~~~ 821 (1331)
....+.+...|+.. ++.|.+.-+ +-+....+|- ++|. +..-+...+..+. +.+
T Consensus 285 ~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYi---V~dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i 360 (896)
T PRK13104 285 KLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYI---VKDNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPI 360 (896)
T ss_pred CccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceE---EECCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCC
Confidence 11112222222221 111111111 0011111111 1111 1112222222111 111
Q ss_pred ccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCC--c--------ccCCc-c-ccccchhHHHHH
Q psy1544 822 TDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSG--I--------VSGPD-L-YRVSGKFELLDR 889 (1331)
Q Consensus 822 ~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~--~--------~~~~~-l-~~~s~K~~~L~~ 889 (1331)
.... .......+.|.+....+++.----.......|....+..- + ...++ + .....|+.++.+
T Consensus 361 ~~e~-----~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~ 435 (896)
T PRK13104 361 QNEN-----QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIE 435 (896)
T ss_pred CCCc-----eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHH
Confidence 1000 0011112233333333333322222222233332222110 0 11111 1 234569999999
Q ss_pred hhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCC-
Q psy1544 890 ILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQ- 968 (1331)
Q Consensus 890 lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~- 968 (1331)
-+..+...|..|||||.+....+.|..+|...|+++..++|.....+|..+.+.|+.+ . ++|+|+.+|+|+|+.
T Consensus 436 ~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~L 510 (896)
T PRK13104 436 DVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVL 510 (896)
T ss_pred HHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceec
Confidence 9999999999999999999999999999999999999999999999999999999853 2 699999999999976
Q ss_pred -------------------------------------CCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 969 -------------------------------------TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 969 -------------------------------------~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
+.=+||.-..+-|-..+.|-.||++|-|..-....|
T Consensus 511 ggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 511 GGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred CCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 233788889999999999999999999988775554
No 142
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=7e-16 Score=165.13 Aligned_cols=154 Identities=27% Similarity=0.364 Sum_probs=109.2
Q ss_pred CCccHHHHHHHHHHHHHhcCC---CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNN---LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAP 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~---~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 630 (1331)
.+|++||.+++..++..+... ..++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 369999999999999887765 78899999999999999998888865 69999999 566999999988876
Q ss_pred CCcEEEecCC-----------hhHHHHHHHHhhccCccEEEeeHHHHHhccCc-------------ccccCccEEEEeCC
Q psy1544 631 SVNVVAYKGS-----------PHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP-------------LAKLHWKYMIIDEG 686 (1331)
Q Consensus 631 ~~~v~~~~g~-----------~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~-------------l~~~~~~~vIiDEa 686 (1331)
.......... ................+++++++..+...... +....+++||+|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 5443321110 00000111223456788999999998764221 22347899999999
Q ss_pred cccCCcchHHHHHHHHhccCCceeeeccCCC
Q psy1544 687 HRMKNHHCKLTHILNTFYVAPHRLLLTGTPL 717 (1331)
Q Consensus 687 Hrikn~~sk~~~~l~~~~~~~~rllLTgTPl 717 (1331)
|++.+... ++.+.. ....++|+|||||.
T Consensus 156 H~~~~~~~--~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHH-SSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHc-CCCCeEEEEEeCcc
Confidence 99977664 333333 47888999999995
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=7.8e-16 Score=155.22 Aligned_cols=120 Identities=30% Similarity=0.529 Sum_probs=110.7
Q ss_pred chhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecccc
Q psy1544 882 GKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAG 961 (1331)
Q Consensus 882 ~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ag 961 (1331)
.|+..+..++.+....+.++||||.+...+..+...|...++.+..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6999999999888767889999999999999999999999999999999999999999999999644 3468899999
Q ss_pred ccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 962 GLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 962 geGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
++|+|++.+++||+++++||+..+.|++||++|.||+..|++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877664
No 144
>KOG0351|consensus
Probab=99.64 E-value=2.3e-15 Score=191.80 Aligned_cols=314 Identities=17% Similarity=0.217 Sum_probs=217.0
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 631 (1331)
.....|+-|.++|...+. |..+++-.+||.||++.-.. -.--..+-+|||.|+ ||+......+... +
T Consensus 261 g~~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQl------PA~l~~gitvVISPL~SLm~DQv~~L~~~--~ 328 (941)
T KOG0351|consen 261 GHKGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQL------PALLLGGVTVVISPLISLMQDQVTHLSKK--G 328 (941)
T ss_pred ccccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeec------cccccCCceEEeccHHHHHHHHHHhhhhc--C
Confidence 445799999999996664 88899999999999975311 111123458999998 6776666666443 3
Q ss_pred CcEEEecCC--hhHHHHHHHHhhcc--CccEEEeeHHHHHhccCcccc---c----CccEEEEeCCcccCCcch---HHH
Q psy1544 632 VNVVAYKGS--PHLRKTLQAQMKAS--KFNVLLTTYEYVIKDKGPLAK---L----HWKYMIIDEGHRMKNHHC---KLT 697 (1331)
Q Consensus 632 ~~v~~~~g~--~~~r~~~~~~~~~~--~~~VvItTye~l~~~~~~l~~---~----~~~~vIiDEaHrikn~~s---k~~ 697 (1331)
+....+.+. ...+..+...+..+ .++|+..|++.+......+.. . -..++||||||....+.- .-+
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 444444444 33344455555566 789999999999876543321 1 258999999999855432 112
Q ss_pred ---HHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHH
Q psy1544 698 ---HILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 774 (1331)
Q Consensus 698 ---~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~ 774 (1331)
..++..+...-.|.||||--..--.|+...|++-.|.++.+. |+.
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------fnR-------------------------- 456 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------FNR-------------------------- 456 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc------CCC--------------------------
Confidence 222222344567999999877777777777777766644321 111
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
+...+-|..+.+ ...++..+...
T Consensus 457 ------------------~NL~yeV~~k~~------------------------------~~~~~~~~~~~--------- 479 (941)
T KOG0351|consen 457 ------------------PNLKYEVSPKTD------------------------------KDALLDILEES--------- 479 (941)
T ss_pred ------------------CCceEEEEeccC------------------------------ccchHHHHHHh---------
Confidence 111111111110 00011111111
Q ss_pred hhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCH
Q psy1544 855 FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKA 934 (1331)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~ 934 (1331)
+....+.-.||||....+++.+...|+..|++...||+++..
T Consensus 480 --------------------------------------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 480 --------------------------------------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred --------------------------------------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 112334578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEee
Q psy1544 935 EDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMT 1008 (1331)
Q Consensus 935 ~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~ 1008 (1331)
.+|..+...|... .++| +++|=|.|.|||-+++..||+|..|-+..-|.|..|||+|.|+...+..|+=..
T Consensus 522 ~~R~~Vq~~w~~~--~~~V-ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 522 KERETVQKAWMSD--KIRV-IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHHhcC--CCeE-EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999853 4555 888999999999999999999999999999999999999999998877765443
No 145
>PRK09694 helicase Cas3; Provisional
Probab=99.64 E-value=8e-15 Score=187.60 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred HHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHH----HHHHHHh-cCCCCCceEEEee
Q psy1544 886 LLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRG---FKYMRLDGTTKAEDR----GDLLKKF-NAPDSEYFIFVLS 957 (1331)
Q Consensus 886 ~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g---~~~~~idG~~~~~eR----~~~i~~F-n~~~~~~~v~LlS 957 (1331)
++..++.. ...|.+|||||+.+..+..+...|...+ +.+..+||.++..+| .++++.| +++......+||+
T Consensus 549 ~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 33344333 3567899999999999999999998765 689999999999999 5678899 4322111346999
Q ss_pred ccccccccCCCCCCEEEEeCCCCCccccccccccccccCCC
Q psy1544 958 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK 998 (1331)
Q Consensus 958 T~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~ 998 (1331)
|.+...|||+ ++|+||....| ...++||+||+||-|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 68988886655 56899999999999874
No 146
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.64 E-value=3.8e-14 Score=178.14 Aligned_cols=135 Identities=19% Similarity=0.215 Sum_probs=112.5
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
...+++..|...|..+...|.+|||||.....++.|..+|...|+.+..+||.++..+|..++..|.. +.+. +||+|
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~-VLV~t 499 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL--GEFD-VLVGI 499 (655)
T ss_pred eccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc--CCce-EEEEc
Confidence 34678888888888888899999999999999999999999999999999999999999999999984 4444 58899
Q ss_pred cccccccCCCCCCEEEEeC-----CCCCccccccccccccccCCCCceEEEEEeeCCC--HHHHHHHH
Q psy1544 959 RAGGLGLNLQTADTVIIFD-----SDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS--VEERILAA 1019 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D-----~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T--iEE~I~~~ 1019 (1331)
..+++|+|++.+++||++| .+-+...++|++||++|.+. -.++.|+...| +...|.+.
T Consensus 500 ~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~---G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 500 NLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN---GKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred ChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCC---CEEEEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999 45688899999999999742 23455555443 44444443
No 147
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.61 E-value=1.6e-14 Score=166.99 Aligned_cols=313 Identities=20% Similarity=0.259 Sum_probs=206.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEeCCccHHH-HHHHHHHHcC--
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQT-IALITYLMEKKKVNGPFLIIVPLSTLSN-WSLEFERWAP-- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~a-i~li~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k~~p-- 630 (1331)
.+|.|-|.-+|..- +-.+.+-++...|++|||+++ ++-|..++.. ++.+|.+||...|.| =..+|..-..
T Consensus 215 ~eLlPVQ~laVe~G---LLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVEAG---LLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhhhc---cccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 47999999999743 336778899999999999985 5555555543 355999999988854 4556765443
Q ss_pred CCcEEEecCChhHHHHHH--HHhhccCccEEEeeHHHHH---hccCcccccCccEEEEeCCcccCCcc--hH---HHHHH
Q psy1544 631 SVNVVAYKGSPHLRKTLQ--AQMKASKFNVLLTTYEYVI---KDKGPLAKLHWKYMIIDEGHRMKNHH--CK---LTHIL 700 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~--~~~~~~~~~VvItTye~l~---~~~~~l~~~~~~~vIiDEaHrikn~~--sk---~~~~l 700 (1331)
++.+.+-.|....+..-. ........||++.||+-+- +....+. +...|||||.|.+.... .. +..-+
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDEiHtL~deERG~RLdGLI~RL 366 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDEIHTLEDEERGPRLDGLIGRL 366 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeeeeeeccchhcccchhhHHHHH
Confidence 344545555544332211 0112456899999998553 3223333 56899999999996522 22 33445
Q ss_pred HHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy1544 701 NTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLL 780 (1331)
Q Consensus 701 ~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~l 780 (1331)
+.++...+.|.||||- .|..||...|+.-... ..
T Consensus 367 r~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV~------------------y~-------------------------- 400 (830)
T COG1202 367 RYLFPGAQFIYLSATV--GNPEELAKKLGAKLVL------------------YD-------------------------- 400 (830)
T ss_pred HHhCCCCeEEEEEeec--CChHHHHHHhCCeeEe------------------ec--------------------------
Confidence 5566677899999994 5566665544321000 00
Q ss_pred HHHHHHHhhhCC-CceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhH
Q psy1544 781 RRLKKEVESQLP-DKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIE 859 (1331)
Q Consensus 781 RR~k~~v~~~LP-~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 859 (1331)
.-| +...+++.|.=
T Consensus 401 ---------~RPVplErHlvf~~~-------------------------------------------------------- 415 (830)
T COG1202 401 ---------ERPVPLERHLVFARN-------------------------------------------------------- 415 (830)
T ss_pred ---------CCCCChhHeeeeecC--------------------------------------------------------
Confidence 001 01111121110
Q ss_pred hhhhhccCCCCcccCCccccccchhHHHHHhhhhhh----cCC--CeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 860 EKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLK----STG--HRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 860 ~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~----~~g--~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
.+.|...+.++++.-. ..| ..+|||+.++.-++.|+++|..+|++..-+|++++
T Consensus 416 --------------------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~ 475 (830)
T COG1202 416 --------------------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLP 475 (830)
T ss_pred --------------------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCc
Confidence 0112222222221110 111 26999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eCCCC-CccccccccccccccCCCCceEEEEEee
Q psy1544 934 AEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FDSDW-NPHQDLQAQDRAHRIGQKNEVRVLRLMT 1008 (1331)
Q Consensus 934 ~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D~~w-Np~~~~QaiGRa~RiGQ~k~V~V~rli~ 1008 (1331)
..+|..+-..|.+. .+.+ +++|.|.|-|+|+++.. ||| +...| ||..+.|..|||+|-|=.-.-.||-++-
T Consensus 476 y~eRk~vE~~F~~q--~l~~-VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 476 YKERKSVERAFAAQ--ELAA-VVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HHHHHHHHHHHhcC--Ccce-EeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 99999999999854 4444 78999999999999644 443 44555 9999999999999999777777887876
Q ss_pred CC
Q psy1544 1009 VN 1010 (1331)
Q Consensus 1009 ~~ 1010 (1331)
.|
T Consensus 552 pg 553 (830)
T COG1202 552 PG 553 (830)
T ss_pred CC
Confidence 65
No 148
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=1.9e-13 Score=170.66 Aligned_cols=119 Identities=17% Similarity=0.224 Sum_probs=103.8
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+..|.+.+......|..|||||.++...+.|...|...|+++..++|.....++.-+...|+. +. ++|+|+
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEec
Confidence 3568999999998888899999999999999999999999999999999999886666666666652 22 699999
Q ss_pred ccccccCCC---CCC-----EEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 960 AGGLGLNLQ---TAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 960 aggeGLNL~---~ad-----~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
.+|+|+|+. .+. +||.++.+-|...+.|++||++|.|..-....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 999999995 677 99999999999999999999999998776533
No 149
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=5.5e-13 Score=169.06 Aligned_cols=124 Identities=20% Similarity=0.257 Sum_probs=107.9
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
..+++..|...|..+...|.+|||||.....++.|...|...|+++..+||.++..+|..++..|.. +.+. +||+|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~-vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFD-VLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc--CCce-EEEEeC
Confidence 4567888888888888899999999999999999999999999999999999999999999999984 3444 588999
Q ss_pred ccccccCCCCCCEEEEeCC-----CCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 960 AGGLGLNLQTADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 960 aggeGLNL~~ad~VI~~D~-----~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
++++|++++.+++||++|. +-++..|+|++||++|. . .-.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999997 45888999999999994 2 3345556654
No 150
>KOG0352|consensus
Probab=99.60 E-value=2.4e-14 Score=160.18 Aligned_cols=322 Identities=18% Similarity=0.215 Sum_probs=207.1
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCcEEE
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVNVVA 636 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~ 636 (1331)
.+-|..++..++. .+..+.++++||.||++.--.- .|+. .+-++||.|+ .++....+.+.+.--....+-
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLP--aL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLP--ALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhch--HHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 3679999998886 6667899999999999753211 1221 3457888898 455667777766432222222
Q ss_pred ecCChhHHHHHHHHhhc--cCccEEEeeHHHHHhc-----cCcc-cccCccEEEEeCCcccCCcch------HHHHHHHH
Q psy1544 637 YKGSPHLRKTLQAQMKA--SKFNVLLTTYEYVIKD-----KGPL-AKLHWKYMIIDEGHRMKNHHC------KLTHILNT 702 (1331)
Q Consensus 637 ~~g~~~~r~~~~~~~~~--~~~~VvItTye~l~~~-----~~~l-~~~~~~~vIiDEaHrikn~~s------k~~~~l~~ 702 (1331)
.+-+...|+.+...+.. ....++.+|++....+ ...| ......|+||||||...-.+- ...-.|+.
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 23334445444433332 3456788888876443 1112 223568999999999843321 12234444
Q ss_pred hccCCceeeeccCCCCCChHHHHHHHhhhcCC-CCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLPELWALLNFLLPS-IFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~-~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
.+...--+.||||--..--+|++..|.+-.|- +|.+...-.+.|
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLF----------------------------------- 217 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLF----------------------------------- 217 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhh-----------------------------------
Confidence 44445568899998877888899988877653 332211111111
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhh
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEK 861 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~ 861 (1331)
|+......+ ..-+..|...|.|-.-- .+.
T Consensus 218 -----------------------------YD~~~K~~I-------------------~D~~~~LaDF~~~~LG~---~~~ 246 (641)
T KOG0352|consen 218 -----------------------------YDNHMKSFI-------------------TDCLTVLADFSSSNLGK---HEK 246 (641)
T ss_pred -----------------------------HHHHHHHHh-------------------hhHhHhHHHHHHHhcCC---hhh
Confidence 111111100 00011111111110000 000
Q ss_pred hhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHH
Q psy1544 862 FSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLL 941 (1331)
Q Consensus 862 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i 941 (1331)
+.+.- +....--||||..+..++.|+-.|...|+....+|.+.+..+|..+.
T Consensus 247 ~~~~~----------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQ 298 (641)
T KOG0352|consen 247 ASQNK----------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQ 298 (641)
T ss_pred hhcCC----------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHH
Confidence 00000 00011359999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEE
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 1005 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~r 1005 (1331)
+.|-+++-+ +|++|-..|.|+|-+++..||++|++-|.+-|.|--||++|.|-..-++.|+
T Consensus 299 e~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 299 EKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 999865544 5889999999999999999999999999999999999999999887788875
No 151
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.59 E-value=8.3e-13 Score=145.18 Aligned_cols=317 Identities=18% Similarity=0.184 Sum_probs=203.4
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcC
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAP 630 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 630 (1331)
.-+|+|.++|..+-+.++..+++....|+-.-+|.|||-+....|.+.+.. ++.+.|..|- .++-.-...|..-++
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhc
Confidence 347999999999999999999999999999999999998877777776655 3558888887 455666677777778
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccC-CcchHHHHHHHHhc-cCCc
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMK-NHHCKLTHILNTFY-VAPH 708 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrik-n~~sk~~~~l~~~~-~~~~ 708 (1331)
+..+.+.+|..... ....=||-||++.+ +-.. .||++||||.+-+- ..+-.+..++.... ....
T Consensus 170 ~~~I~~Lyg~S~~~--------fr~plvVaTtHQLl-rFk~-----aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 170 NCDIDLLYGDSDSY--------FRAPLVVATTHQLL-RFKQ-----AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred cCCeeeEecCCchh--------ccccEEEEehHHHH-HHHh-----hccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 78887777765322 11223455555544 3222 58999999999872 22223344444432 2456
Q ss_pred eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1544 709 RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 788 (1331)
Q Consensus 709 rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~ 788 (1331)
+|.|||||-.. +.+.... +....+ ....|.| .
T Consensus 236 ~IylTATp~k~----------------------l~r~~~~-----g~~~~~------klp~RfH---------------~ 267 (441)
T COG4098 236 TIYLTATPTKK----------------------LERKILK-----GNLRIL------KLPARFH---------------G 267 (441)
T ss_pred eEEEecCChHH----------------------HHHHhhh-----CCeeEe------ecchhhc---------------C
Confidence 79999998311 0000000 000000 0000000 0
Q ss_pred hhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCC
Q psy1544 789 SQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGG 868 (1331)
Q Consensus 789 ~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 868 (1331)
+.||-. ..+++. .+.+.++
T Consensus 268 ~pLpvP--kf~w~~----------------------------------~~~k~l~------------------------- 286 (441)
T COG4098 268 KPLPVP--KFVWIG----------------------------------NWNKKLQ------------------------- 286 (441)
T ss_pred CCCCCC--ceEEec----------------------------------cHHHHhh-------------------------
Confidence 011110 011110 0111111
Q ss_pred CCcccCCccccccchhH-HHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-C-CeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 869 SGIVSGPDLYRVSGKFE-LLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-G-FKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 869 ~~~~~~~~l~~~s~K~~-~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g-~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
..|+. .|.+.|.+...+|.-++||.....++..+...|+.. + .....+|..+. .|.+.+..|+
T Consensus 287 ------------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR 352 (441)
T COG4098 287 ------------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFR 352 (441)
T ss_pred ------------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHH
Confidence 12333 577888888899999999999999999999999543 2 33455655544 7999999999
Q ss_pred CCCCCceEEEeeccccccccCCCCCCEEEEeCCC--CCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 946 APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD--WNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 946 ~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~--wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
+ +.+. +|++|..+.+|+.++.+|++|+=.-. ++-...+|.-||++|--..-.-.|+.|..--|
T Consensus 353 ~--G~~~-lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 353 D--GKIT-LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred c--CceE-EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 5 4433 68999999999999999999985544 88899999999999965444444444443333
No 152
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=5.6e-13 Score=167.24 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=105.6
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+.+|...+.++...|..|||||.+....+.|...|...|+++..++|. +.+|+..|..|....+ -++|+|+
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g---~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPG---AVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCc---eEEEecc
Confidence 3569999999998888899999999999999999999999999999999995 7799999999985333 3699999
Q ss_pred ccccccCCCC--------------------------------------CCEEEEeCCCCCccccccccccccccCCCCce
Q psy1544 960 AGGLGLNLQT--------------------------------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 960 aggeGLNL~~--------------------------------------ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
.+|+|+|+.- .=+||.-..+-|-..+.|..||++|-|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999764 34788888999999999999999999998776
Q ss_pred EEE
Q psy1544 1002 RVL 1004 (1331)
Q Consensus 1002 ~V~ 1004 (1331)
+.|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 554
No 153
>KOG0353|consensus
Probab=99.57 E-value=4.4e-14 Score=155.19 Aligned_cols=312 Identities=20% Similarity=0.226 Sum_probs=223.1
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCcE
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVNV 634 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v 634 (1331)
+.||.|+.+|+..+. +...+|..++|-||++.--.- .| -..|-.|||||. +++....-.+.....+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlp--al----~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLP--AL----CADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhh--HH----hcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 689999999998886 788899999999999753211 11 124568999998 7777788888888766666
Q ss_pred EEecCChhHHHHHHHHh--hccCccEEEeeHHHHHhccCc-------ccccCccEEEEeCCcccCCc------chHHHHH
Q psy1544 635 VAYKGSPHLRKTLQAQM--KASKFNVLLTTYEYVIKDKGP-------LAKLHWKYMIIDEGHRMKNH------HCKLTHI 699 (1331)
Q Consensus 635 ~~~~g~~~~r~~~~~~~--~~~~~~VvItTye~l~~~~~~-------l~~~~~~~vIiDEaHrikn~------~sk~~~~ 699 (1331)
+-...++..-+.....+ +...|.++..|++.+.+.+.+ +....|.++-|||.|.+.-. .-+...+
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 66666666555555443 456789999999998776443 23336889999999998432 2234456
Q ss_pred HHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHH
Q psy1544 700 LNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 779 (1331)
Q Consensus 700 l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~ 779 (1331)
|.+.++....|+||||...+-+.|.-.+|..-. .-.|..-|+.|-
T Consensus 244 lkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~n----------------------------- 288 (695)
T KOG0353|consen 244 LKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPN----------------------------- 288 (695)
T ss_pred HHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCC-----------------------------
Confidence 666667888899999998888887766654320 011222222211
Q ss_pred HHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhH
Q psy1544 780 LRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIE 859 (1331)
Q Consensus 780 lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~ 859 (1331)
....++.- .++
T Consensus 289 --------------l~yev~qk------------------------------p~n------------------------- 299 (695)
T KOG0353|consen 289 --------------LKYEVRQK------------------------------PGN------------------------- 299 (695)
T ss_pred --------------ceeEeeeC------------------------------CCC-------------------------
Confidence 10001000 000
Q ss_pred hhhhhccCCCCcccCCccccccchhHHHHHhhhhh--hcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Q psy1544 860 EKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKL--KSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDR 937 (1331)
Q Consensus 860 ~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l--~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR 937 (1331)
--+.+.+|.+-+ .-.|..-||||-+......+...|..+|+....+|..+.+++|
T Consensus 300 -----------------------~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dk 356 (695)
T KOG0353|consen 300 -----------------------EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDK 356 (695)
T ss_pred -----------------------hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccc
Confidence 001111111111 1235567999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccc------------------------------
Q psy1544 938 GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ------------------------------ 987 (1331)
Q Consensus 938 ~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~Q------------------------------ 987 (1331)
..+-..|-+ +.+.| +++|-+.|.|||-+++..||+..++.+...|.|
T Consensus 357 s~~hq~w~a--~eiqv-ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevc 433 (695)
T KOG0353|consen 357 SGAHQGWIA--GEIQV-IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVC 433 (695)
T ss_pred ccccccccc--cceEE-EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhh
Confidence 999999974 45666 778899999999999999999999999999999
Q ss_pred -------------ccccccccCCCCceEEEEEe
Q psy1544 988 -------------AQDRAHRIGQKNEVRVLRLM 1007 (1331)
Q Consensus 988 -------------aiGRa~RiGQ~k~V~V~rli 1007 (1331)
--||++|.|++-++..|+-.
T Consensus 434 tnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 434 TNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred ccceeeeeeecchhccccccCCCcccEEEEech
Confidence 67999999999997776644
No 154
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.56 E-value=2.2e-13 Score=177.53 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=87.3
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcCCe---EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRGFK---YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI 974 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g~~---~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI 974 (1331)
...||||+.....++.+...|...++. ++.++|++++++|..+++.+ +.. -+|+||++++.||+++++++||
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~r-kIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGR-RIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCe-eEEEeccHHhhccccCcceEEE
Confidence 457999999999999999999988765 67899999999999887653 233 4689999999999999999999
Q ss_pred EeC---------------CCCCc---cccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 975 IFD---------------SDWNP---HQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 975 ~~D---------------~~wNp---~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
.++ .+..+ ..+.||.||++|.+ +-.+|+|++....
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 985 22223 57999999999984 5677888886543
No 155
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2.5e-12 Score=160.83 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=107.5
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+.++.+-+..+.+.|..|||||.+....+.|..+|...|+++..++|..+..+|..+...|+. +. ++|+|+
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~---VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--GA---VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--Cc---EEEecC
Confidence 4679999999999999999999999999999999999999999999999999999999999999984 33 699999
Q ss_pred ccccccCCC-------------------------------------CCCEEEEeCCCCCccccccccccccccCCCCceE
Q psy1544 960 AGGLGLNLQ-------------------------------------TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 1002 (1331)
Q Consensus 960 aggeGLNL~-------------------------------------~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~ 1002 (1331)
.+|+|+|+. +.=+||.-..+-|-..+.|..||++|-|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999976 2347899999999999999999999999877654
Q ss_pred EE
Q psy1544 1003 VL 1004 (1331)
Q Consensus 1003 V~ 1004 (1331)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 156
>KOG0952|consensus
Probab=99.52 E-value=4e-13 Score=165.18 Aligned_cols=335 Identities=19% Similarity=0.205 Sum_probs=199.7
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCcEEEEeCCccH-----HHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK-------KVNGPFLIIVPLSTL-----SNWSL 623 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~-------~~~~p~LIV~P~sll-----~qW~~ 623 (1331)
+|.--|-.+.. ..|..+.|.|++.+||+|||..|...|..++..+ ...-.++-|+|...| .+|..
T Consensus 110 ~fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~k 186 (1230)
T KOG0952|consen 110 EFNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSK 186 (1230)
T ss_pred HHHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhh
Confidence 34444555554 3467899999999999999999877777666641 123358999998655 34544
Q ss_pred HHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHh-------ccCcccccCccEEEEeCCcccCCcch--
Q psy1544 624 EFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIK-------DKGPLAKLHWKYMIIDEGHRMKNHHC-- 694 (1331)
Q Consensus 624 E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~-------~~~~l~~~~~~~vIiDEaHrikn~~s-- 694 (1331)
.|.-| ++.|.-+.|+...-+.- ....+|+|||++.+-- +...+. ...+|||||.|-+.....
T Consensus 187 kl~~~--gi~v~ELTGD~ql~~te-----i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpv 257 (1230)
T KOG0952|consen 187 KLAPL--GISVRELTGDTQLTKTE-----IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPV 257 (1230)
T ss_pred hcccc--cceEEEecCcchhhHHH-----HHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccch
Confidence 44443 57888899986554331 3467999999997621 112222 458999999999965442
Q ss_pred ---HHHHHHHH---hccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHH
Q psy1544 695 ---KLTHILNT---FYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILII 768 (1331)
Q Consensus 695 ---k~~~~l~~---~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~ 768 (1331)
-.++.++. ....-+.++||||- . |+.| +..||....+.....|+..|.--..
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATl-P-N~eD---vA~fL~vn~~~glfsFd~~yRPvpL----------------- 315 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATL-P-NYED---VARFLRVNPYAGLFSFDQRYRPVPL----------------- 315 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccC-C-CHHH---HHHHhcCCCccceeeecccccccce-----------------
Confidence 22333321 11334668999993 2 3333 4456655555555555544422100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHh
Q psy1544 769 RRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKL 848 (1331)
Q Consensus 769 ~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~ 848 (1331)
...++-+. .++... -...+
T Consensus 316 --------------------------~~~~iG~k----------------------------~~~~~~-~~~~~------ 334 (1230)
T KOG0952|consen 316 --------------------------TQGFIGIK----------------------------GKKNRQ-QKKNI------ 334 (1230)
T ss_pred --------------------------eeeEEeee----------------------------cccchh-hhhhH------
Confidence 00000000 000000 00000
Q ss_pred cCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc----CC-
Q psy1544 849 CNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR----GF- 923 (1331)
Q Consensus 849 ~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~----g~- 923 (1331)
..++... +.++...||.|+||+..+...-..+..|... |.
T Consensus 335 -------------------------------d~~~~~k----v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~ 379 (1230)
T KOG0952|consen 335 -------------------------------DEVCYDK----VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEK 379 (1230)
T ss_pred -------------------------------HHHHHHH----HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcc
Confidence 0011122 2233567999999999887655555555432 22
Q ss_pred ------------------eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccc-
Q psy1544 924 ------------------KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQ- 984 (1331)
Q Consensus 924 ------------------~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~- 984 (1331)
....-|.++...+|.-.-+.|.. +.+.| |+||...+-|+||++-..+|-=-.-|+...
T Consensus 380 ~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg 456 (1230)
T KOG0952|consen 380 DLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHIKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKG 456 (1230)
T ss_pred cccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--CCceE-EEecceeeeccCCcceEEEecCCcccccccC
Confidence 23455668888999999999984 55665 999999999999998777765444555544
Q ss_pred ---------cccccccccccCCCCceEEEEEeeC-------------CCHHHHHHHHHHHH
Q psy1544 985 ---------DLQAQDRAHRIGQKNEVRVLRLMTV-------------NSVEERILAAARYK 1023 (1331)
Q Consensus 985 ---------~~QaiGRa~RiGQ~k~V~V~rli~~-------------~TiEE~I~~~~~~K 1023 (1331)
.+|..|||+|-+=.+.-..+.+.+. +.||.+++..+..-
T Consensus 457 ~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dn 517 (1230)
T KOG0952|consen 457 SFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDN 517 (1230)
T ss_pred ceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 6799999999764444333333333 34566666555543
No 157
>KOG1245|consensus
Probab=99.52 E-value=1.3e-14 Score=191.38 Aligned_cols=97 Identities=29% Similarity=0.545 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCC
Q psy1544 1222 LKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEE 1301 (1331)
Q Consensus 1222 ~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~ 1301 (1331)
|..|+..+..|.+ ||||++||+.+++||||+||++||||+||+.|+..|.|.+..+|..||.|||.||.+||++
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~ 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED 1379 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1302 LSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1302 ~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|.|+.....|.++|.+.|....+
T Consensus 1380 -s~i~~ag~~l~~ff~~~~~~~~~ 1402 (1404)
T KOG1245|consen 1380 -SEIGRAGTCLRRFFHKRWRKKFP 1402 (1404)
T ss_pred -hhhhhhcchHHHHHHHHHHhhcC
Confidence 99999999999999998876543
No 158
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.51 E-value=1.6e-13 Score=147.95 Aligned_cols=159 Identities=26% Similarity=0.401 Sum_probs=114.6
Q ss_pred cCCccHHHHHHHHHHHHHhcCC-CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNN-LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPS 631 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~-~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 631 (1331)
..++++||.+++.+++. . .++++..++|+|||.+++.++........ .+++||++|+ .+..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 45799999999998874 4 78899999999999988777777665543 3469999996 5559999999998865
Q ss_pred ---CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc--ccccCccEEEEeCCcccCC--cchHHHHHHHHhc
Q psy1544 632 ---VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP--LAKLHWKYMIIDEGHRMKN--HHCKLTHILNTFY 704 (1331)
Q Consensus 632 ---~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaHrikn--~~sk~~~~l~~~~ 704 (1331)
.....+.+... ...+. ......++|+++|++.+...... +....|+++||||+|++.+ ........+..+.
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 81 LGLKVVGLYGGDSK-REQLR-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CCeEEEEEeCCcch-HHHHH-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 33445555432 22222 22334459999999988875433 4455789999999999985 3334444444443
Q ss_pred cCCceeeeccCCCCC
Q psy1544 705 VAPHRLLLTGTPLQN 719 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN 719 (1331)
...+++++||||..+
T Consensus 159 ~~~~~v~~saT~~~~ 173 (201)
T smart00487 159 KNVQLLLLSATPPEE 173 (201)
T ss_pred ccceEEEEecCCchh
Confidence 578899999999744
No 159
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=2e-14 Score=131.71 Aligned_cols=78 Identities=32% Similarity=0.620 Sum_probs=72.9
Q ss_pred HHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccccccccccc
Q psy1544 916 DYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 995 (1331)
Q Consensus 916 ~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~Ri 995 (1331)
.+|...|+.+..+||+++..+|..+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688899999999999999999999999996554 3689999999999999999999999999999999999999999
Q ss_pred C
Q psy1544 996 G 996 (1331)
Q Consensus 996 G 996 (1331)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 160
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.49 E-value=1.1e-12 Score=171.88 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=87.5
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRG---FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI 974 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g---~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI 974 (1331)
...||||+.....++.+...|...+ +.+..+||+++.++|..+++.+. .. -+|+||++++.||+++++++||
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~r-kIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS----GR-RIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC----Cc-eEEEeccHHHhccccCCeeEEE
Confidence 3589999999999999999998764 45889999999999998855442 23 3689999999999999999999
Q ss_pred EeCCC----C--------------CccccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 975 IFDSD----W--------------NPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 975 ~~D~~----w--------------Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
.++.. + +-..+.||.||++|.| +-.+|+|++....
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 98732 1 3357899999999998 6677899886543
No 161
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=2.6e-12 Score=161.21 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=102.8
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRA 960 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a 960 (1331)
..|+..|...+..+...|..|||||.++...+.|..+|...|+++..|++ ++.+|+..|..|....+ .++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g---~VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG---AVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC---eEEEeccC
Confidence 46999999999988889999999999999999999999999999999997 67899999999985333 36999999
Q ss_pred cccccCCCCCC--------EEEEeCCCCCccccccccccccccCCCCce
Q psy1544 961 GGLGLNLQTAD--------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 961 ggeGLNL~~ad--------~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
+|+|+|+.-.+ +||.++.+-|...|.|++||++|.|..-..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999999433 448889999999999999999999987764
No 162
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.44 E-value=7.2e-13 Score=134.21 Aligned_cols=137 Identities=23% Similarity=0.343 Sum_probs=99.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-CCcEEEecCChhHHHHHHHHhhcc
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-SVNVVAYKGSPHLRKTLQAQMKAS 654 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~~~v~~~~g~~~~r~~~~~~~~~~ 654 (1331)
++++.+++|+|||.+++.++..+.... ..++++|+||...+ .+|...+..+.. ...+.++.+........ .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--KLLSG 78 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--HHhcC
Confidence 678999999999999999999887763 34569999999877 555667777775 46666666654433322 22346
Q ss_pred CccEEEeeHHHHHhccCc--ccccCccEEEEeCCcccCCcchHHH--HHHHHhccCCceeeeccCC
Q psy1544 655 KFNVLLTTYEYVIKDKGP--LAKLHWKYMIIDEGHRMKNHHCKLT--HILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 655 ~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaHrikn~~sk~~--~~l~~~~~~~~rllLTgTP 716 (1331)
..+|+++||+.+...... +....|++|||||+|.+.+...... ..........++++|||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999988765432 2344799999999999988765443 1222334677889999998
No 163
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.43 E-value=2.8e-12 Score=164.94 Aligned_cols=350 Identities=18% Similarity=0.179 Sum_probs=207.2
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh-cCCCCcEEEEeCCccH-HHHHHHHHHHcC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK-KKVNGPFLIIVPLSTL-SNWSLEFERWAP 630 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~-~~~~~p~LIV~P~sll-~qW~~E~~k~~p 630 (1331)
.+...+++|..++.+.......+..++|-++||.|||..++.++.+.... ......++.|.|..++ .+..+.+..++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 192 IEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred cCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 34456999999999999877666578999999999999999888888777 3344557888888666 677778888775
Q ss_pred CCcEEEe--cCChhHHHHHHHH------------hhccCccEEEeeHHHHHhc------cCcccccCccEEEEeCCcccC
Q psy1544 631 SVNVVAY--KGSPHLRKTLQAQ------------MKASKFNVLLTTYEYVIKD------KGPLAKLHWKYMIIDEGHRMK 690 (1331)
Q Consensus 631 ~~~v~~~--~g~~~~r~~~~~~------------~~~~~~~VvItTye~l~~~------~~~l~~~~~~~vIiDEaHrik 690 (1331)
...+... +|.....-..... ....-+.+.+++...+... ...+..+...+||+||+|-+-
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 5444433 4443222111100 0011112222222222211 011333456799999999986
Q ss_pred Cc-chHH-HHHHHHhc-cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHH
Q psy1544 691 NH-HCKL-THILNTFY-VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILI 767 (1331)
Q Consensus 691 n~-~sk~-~~~l~~~~-~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~ 767 (1331)
.. .... ..++..+. -....|++|||+- ..|.+.+..
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~l~~------------------- 390 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEKLKK------------------- 390 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHHHHH-------------------
Confidence 55 3322 22222221 2567899999951 011111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHH
Q psy1544 768 IRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRK 847 (1331)
Q Consensus 768 ~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk 847 (1331)
.+.+ ......... ...
T Consensus 391 ----------~~~~------------~~~~~~~~~------------------------------------------~~~ 406 (733)
T COG1203 391 ----------ALGK------------GREVVENAK------------------------------------------FCP 406 (733)
T ss_pred ----------HHhc------------ccceecccc------------------------------------------ccc
Confidence 0000 000000000 000
Q ss_pred hcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEE
Q psy1544 848 LCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMR 927 (1331)
Q Consensus 848 ~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~ 927 (1331)
.++.+.+....... ... ... ..+...+..-...|.+|+|-|+.+..+..+...|+..+.+++.
T Consensus 407 ~~~e~~~~~~~~~~---------~~~-------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 407 KEDEPGLKRKERVD---------VED-------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred cccccccccccchh---------hhh-------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 00011000000000 000 000 1223333344567789999999999999999999999889999
Q ss_pred EcCCCCHHHHHHHHHHhcC--CCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccC--CCCceEE
Q psy1544 928 LDGTTKAEDRGDLLKKFNA--PDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG--QKNEVRV 1003 (1331)
Q Consensus 928 idG~~~~~eR~~~i~~Fn~--~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiG--Q~k~V~V 1003 (1331)
+||.....+|.+.++.... .....+ ++|+|.+...|+|+. .|.+|- |+ --....+||.||++|-| ....++|
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd~mIT-e~-aPidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FDVLIT-EL-APIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cCeeee-cC-CCHHHHHHHHHHHhhcccccCCceeE
Confidence 9999999999999885432 112223 689999999999998 777662 22 12345889999999999 5566888
Q ss_pred EEEeeCCCHHHHHHHHHHHHHHHHH
Q psy1544 1004 LRLMTVNSVEERILAAARYKLNMDE 1028 (1331)
Q Consensus 1004 ~rli~~~TiEE~I~~~~~~K~~l~~ 1028 (1331)
|...-........+.....+.....
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 546 YNDEERGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred eecccCCCchhhhhhcchhhhcccc
Confidence 8887777777777766655544433
No 164
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=7.3e-11 Score=148.06 Aligned_cols=119 Identities=13% Similarity=0.199 Sum_probs=97.3
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH-HHHHHhcCCCCCceEEEeec
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRG-DLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~-~~i~~Fn~~~~~~~v~LlST 958 (1331)
...|..++..-+..+...|..|||-|.+....+.|..+|...|+++.+++.... +++ .+|..= +..+ .+.|+|
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~A--G~~g--~VTIAT 623 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAGA--GKLG--AVTVAT 623 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHhc--CCCC--cEEEee
Confidence 357889999888888999999999999999999999999999999999988633 333 444433 2222 368999
Q ss_pred cccccccCCCC--------CCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 959 RAGGLGLNLQT--------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 959 ~aggeGLNL~~--------ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
..+|+|.|+.- .=+||....+-|...+.|..||++|-|..-....|
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999999763 34788899999999999999999999988765544
No 165
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.38 E-value=4.5e-12 Score=133.98 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCC--CcEE
Q psy1544 559 EYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPS--VNVV 635 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~--~~v~ 635 (1331)
|+|.+++..++ ++.+.|+..++|+|||..++..+...+... ..+.+||+||.. ++.+-..++..++.. ..+.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999998777 367789999999999999887766655554 344699999995 558888899888864 6777
Q ss_pred EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc--ccccCccEEEEeCCcccCCc--chHHHHHHHHhc--cCCce
Q psy1544 636 AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP--LAKLHWKYMIIDEGHRMKNH--HCKLTHILNTFY--VAPHR 709 (1331)
Q Consensus 636 ~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~--l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~~--~~~~r 709 (1331)
.+.|............ ....+|+|+|++.+...... +.....++|||||+|.+... .......+..+. ...+.
T Consensus 77 ~~~~~~~~~~~~~~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEE
T ss_pred cccccccccccccccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcE
Confidence 7766554322222222 45789999999998764322 22234799999999999663 233334444432 23668
Q ss_pred eeeccCCCCCChH
Q psy1544 710 LLLTGTPLQNKLP 722 (1331)
Q Consensus 710 llLTgTPlqN~l~ 722 (1331)
+++||||- .++.
T Consensus 156 i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 156 ILLSATLP-SNVE 167 (169)
T ss_dssp EEEESSST-HHHH
T ss_pred EEEeeCCC-hhHh
Confidence 99999986 4443
No 166
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.38 E-value=7.1e-12 Score=136.98 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=108.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHH-HHHHHHhc-CCCCcEEEEeCCc-cHHHHHHHHHHHcC--
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAL-ITYLMEKK-KVNGPFLIIVPLS-TLSNWSLEFERWAP-- 630 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~l-i~~l~~~~-~~~~p~LIV~P~s-ll~qW~~E~~k~~p-- 630 (1331)
.+++||.+++..+.. +.+.+++.++|+|||++.+.. +..+.... .....+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988775 788999999999999985444 44444331 2345699999995 44889998888864
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcch-H-HHHHHHHhccC
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHC-K-LTHILNTFYVA 706 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~s-k-~~~~l~~~~~~ 706 (1331)
+..+..+.|.......... .....+|+|+|.+.+.... ..+.-..++++||||+|++.+... . +...+..+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~ 174 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK--LKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD 174 (203)
T ss_pred CceEEEEECCCCHHHHHHH--hcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcc
Confidence 5667777776554433222 2257899999988765421 222223679999999999875432 2 22333333345
Q ss_pred CceeeeccCCC
Q psy1544 707 PHRLLLTGTPL 717 (1331)
Q Consensus 707 ~~rllLTgTPl 717 (1331)
...+++|||+-
T Consensus 175 ~~~~~~SAT~~ 185 (203)
T cd00268 175 RQTLLFSATMP 185 (203)
T ss_pred cEEEEEeccCC
Confidence 67899999985
No 167
>KOG0329|consensus
Probab=99.35 E-value=4.4e-12 Score=133.70 Aligned_cols=150 Identities=18% Similarity=0.282 Sum_probs=99.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHH-HHHHHHHHHHhcCCCC--cEEEEeCCccH-HHHHHHHH---HH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQ-TIALITYLMEKKKVNG--PFLIIVPLSTL-SNWSLEFE---RW 628 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~-ai~li~~l~~~~~~~~--p~LIV~P~sll-~qW~~E~~---k~ 628 (1331)
...+.|.++|-..+- +...+...-.|+|||.+ +++.+.. -.+..| .+||+|.+..| .|...|+. ++
T Consensus 64 hpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqq---iepv~g~vsvlvmchtrelafqi~~ey~rfsky 136 (387)
T KOG0329|consen 64 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQ---IEPVDGQVSVLVMCHTRELAFQISKEYERFSKY 136 (387)
T ss_pred CchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhh---cCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhh
Confidence 456678888876664 66677778899999976 3333333 233333 48999999877 67777655 56
Q ss_pred cCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcchHHHHHHHHhc--
Q psy1544 629 APSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-- 704 (1331)
Q Consensus 629 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-- 704 (1331)
.|++++.+|.|+-..++.... ...-.+|++.|++.+... ...|.-.+....|+|||..|...- ...+.+..++
T Consensus 137 mP~vkvaVFfGG~~Ikkdee~--lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l-DMrRDvQEifr~ 213 (387)
T KOG0329|consen 137 MPSVKVSVFFGGLFIKKDEEL--LKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL-DMRRDVQEIFRM 213 (387)
T ss_pred CCCceEEEEEcceeccccHHH--HhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH-HHHHHHHHHhhc
Confidence 799999999998665543222 223789999999988653 233444467899999999874422 1222233332
Q ss_pred --cCCceeeeccC
Q psy1544 705 --VAPHRLLLTGT 715 (1331)
Q Consensus 705 --~~~~rllLTgT 715 (1331)
+.+..+.+|||
T Consensus 214 tp~~KQvmmfsat 226 (387)
T KOG0329|consen 214 TPHEKQVMMFSAT 226 (387)
T ss_pred Ccccceeeeeeee
Confidence 34556778887
No 168
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.35 E-value=1.4e-12 Score=119.83 Aligned_cols=81 Identities=35% Similarity=0.550 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccc
Q psy1544 913 ILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 992 (1331)
Q Consensus 913 ~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa 992 (1331)
.|..+|...++.+..++|+++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999996443 5789999999999999999999999999999999999999
Q ss_pred cccC
Q psy1544 993 HRIG 996 (1331)
Q Consensus 993 ~RiG 996 (1331)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 169
>KOG1924|consensus
Probab=99.32 E-value=3.7e-12 Score=150.80 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=8.8
Q ss_pred CCCCCCCCCHHHHHH
Q psy1544 190 NIPKPEGLDPLIILQ 204 (1331)
Q Consensus 190 p~~~P~g~d~~~~~~ 204 (1331)
.|..|.|+.|++.++
T Consensus 607 aPvlP~gLkpKK~~k 621 (1102)
T KOG1924|consen 607 APVLPFGLKPKKVYK 621 (1102)
T ss_pred cccCCCCCCccccCC
Confidence 345677776655544
No 170
>KOG0947|consensus
Probab=99.30 E-value=1.7e-10 Score=140.84 Aligned_cols=377 Identities=16% Similarity=0.175 Sum_probs=202.7
Q ss_pred ccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH-HHHHHHH
Q psy1544 549 ASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN-WSLEFER 627 (1331)
Q Consensus 549 p~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k 627 (1331)
+.......|-.+|+++|-.|. .+..+++|..|-.|||++|=..|+....+ ..+++.-.|-..|+| =.++|+.
T Consensus 290 ~a~~~pFelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 290 MALIYPFELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred HHhhCCCCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHH
Confidence 334456789999999997776 48888999999999999965444322222 345788889888855 4678887
Q ss_pred HcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc----cCcccccCccEEEEeCCcccCCcchH-HHH-HHH
Q psy1544 628 WAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD----KGPLAKLHWKYMIIDEGHRMKNHHCK-LTH-ILN 701 (1331)
Q Consensus 628 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~~~~~vIiDEaHrikn~~sk-~~~-~l~ 701 (1331)
-+.+.. ++.|.-.. .....++|.|-+.+++- .+.+.. ...||+||.|.+.+.... .|. .+-
T Consensus 363 tF~Dvg--LlTGDvqi---------nPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 363 TFGDVG--LLTGDVQI---------NPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred hccccc--eeecceee---------CCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeee
Confidence 776665 55565322 23567999999988763 333443 577999999999665432 232 232
Q ss_pred HhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q psy1544 702 TFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 781 (1331)
Q Consensus 702 ~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lR 781 (1331)
.+.+.-..|+||||- .+..+|..|+......+-..+..
T Consensus 430 MlP~HV~~IlLSATV--------------------PN~~EFA~WIGRtK~K~IyViST---------------------- 467 (1248)
T KOG0947|consen 430 MLPRHVNFILLSATV--------------------PNTLEFADWIGRTKQKTIYVIST---------------------- 467 (1248)
T ss_pred eccccceEEEEeccC--------------------CChHHHHHHhhhccCceEEEEec----------------------
Confidence 333445569999993 23456778877533222111100
Q ss_pred HHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCc-chHHHHHHHHHHHHhcCCccchhhhHh
Q psy1544 782 RLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKG-GAKALMNTIVQLRKLCNHPFMFQNIEE 860 (1331)
Q Consensus 782 R~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 860 (1331)
..-|-..++.+++.-+ +|.-+-.....+..+........+ .++..- .+-.++ +-......
T Consensus 468 -------~kRPVPLEh~l~t~~~-----l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~------~~~~~~-~~~rgs~~ 528 (1248)
T KOG0947|consen 468 -------SKRPVPLEHYLYTKKS-----LFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD------VEKSDA-RGGRGSQK 528 (1248)
T ss_pred -------CCCccceEEEEEeccc-----eehhhcccchhhhhcchhhhhhhcccccccc------cccccc-cccccccc
Confidence 0124445666666511 111111111111100000000000 000000 000000 00000000
Q ss_pred hhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCC-CeeEEEeccHHHHHHHHHHHHhcCC----------------
Q psy1544 861 KFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTG-HRVLLFCQMTQLMNILEDYFSYRGF---------------- 923 (1331)
Q Consensus 861 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g-~KVLIFsq~~~~ld~L~~~L~~~g~---------------- 923 (1331)
.........+...+...-....|-.....++..+...+ -.+||||-++.-++.-+++|...++
T Consensus 529 ~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~ 608 (1248)
T KOG0947|consen 529 RGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKA 608 (1248)
T ss_pred cCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 00000000000000000111111123444555444333 3689999888877777777764322
Q ss_pred -----------------------eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCC--
Q psy1544 924 -----------------------KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDS-- 978 (1331)
Q Consensus 924 -----------------------~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~-- 978 (1331)
.+.+-||+.=+--++-+---|.. + +.-+|++|...+.|+|+++ .+|||-..
T Consensus 609 ~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr--G-lVKVLFATETFAMGVNMPA-RtvVF~Sl~K 684 (1248)
T KOG0947|consen 609 VARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR--G-LVKVLFATETFAMGVNMPA-RTVVFSSLRK 684 (1248)
T ss_pred HHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc--C-ceEEEeehhhhhhhcCCCc-eeEEeeehhh
Confidence 14556666665555555556763 3 3335999999999999996 44554332
Q ss_pred -------CCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 979 -------DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 979 -------~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
.-+|..|.|.-|||+|-|=-..-+|+.++ .++
T Consensus 685 hDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~-~~~ 723 (1248)
T KOG0947|consen 685 HDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMC-KDS 723 (1248)
T ss_pred ccCcceeecCChhHHhhhccccccccCcCceEEEEe-cCC
Confidence 24899999999999999987665655444 444
No 171
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.29 E-value=1.7e-09 Score=125.68 Aligned_cols=139 Identities=20% Similarity=0.242 Sum_probs=112.4
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRA 960 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a 960 (1331)
.+-++-|..-+.+..+.|.||||-+-.+.++.-|.+||...|+++..+|+....-+|.++|.+.+.+ .+. +|+....
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G--~~D-vLVGINL 505 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG--EFD-VLVGINL 505 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC--Ccc-EEEeehh
Confidence 3444445555555567889999999999999999999999999999999999999999999999853 344 5889999
Q ss_pred cccccCCCCCCEEEEeCCCC-----CccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHH
Q psy1544 961 GGLGLNLQTADTVIIFDSDW-----NPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYK 1023 (1331)
Q Consensus 961 ggeGLNL~~ad~VI~~D~~w-----Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K 1023 (1331)
+-+||||+.+..|.|+|.+. +-...+|-||||.|--..+ |..|-=...+|+...|-+..++.
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999875 7788999999999954433 55554445567777776655443
No 172
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=3e-09 Score=130.77 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=98.5
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+..+.+-+.++.+.|..|||.|.+....+.|...|...|+++.+++.... ++-..+|.+=- ..+ .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG--~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAG--KYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcC--CCC--cEEEEec
Confidence 456888898888888999999999999999999999999999999999998744 33344554432 222 3689999
Q ss_pred ccccccCCCC---------------CCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 960 AGGLGLNLQT---------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 960 aggeGLNL~~---------------ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
.+|+|.|+.- .=+||....+-|-..+.|..||++|-|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999999763 34889899999999999999999999988775554
No 173
>KOG1827|consensus
Probab=99.26 E-value=6.4e-12 Score=150.94 Aligned_cols=109 Identities=35% Similarity=0.593 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1213 KDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1213 ~~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
.....+..+++.++..+.++.|.+|+.++..|.++|+++..|+||.+|.+||+|+.|++|++.+.|.+++.|..|+.||+
T Consensus 48 ~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ 127 (629)
T KOG1827|consen 48 VIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMT 127 (629)
T ss_pred ccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQ 1321 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~ 1321 (1331)
.||+.||..||.||++|..|+..|.....
T Consensus 128 ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 128 ENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 99999999999999999999999988654
No 174
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.26 E-value=5.7e-10 Score=146.65 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=60.9
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHH-HH---HHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSL-EF---ERW 628 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~-E~---~k~ 628 (1331)
+.+.|++|.+.+..+...+.++..+++-.+||+|||+..+..+..+.. ...+++|.||+..| .||.. ++ .+.
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~ 319 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNEI 319 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 457899999999988888888888888999999999987666544433 23579999999776 77754 44 333
Q ss_pred cC-CCcEEEecCC
Q psy1544 629 AP-SVNVVAYKGS 640 (1331)
Q Consensus 629 ~p-~~~v~~~~g~ 640 (1331)
++ .+++.+.+|.
T Consensus 320 ~~~~~~~~~~kG~ 332 (850)
T TIGR01407 320 LNFKINAALIKGK 332 (850)
T ss_pred cCCCceEEEEEcc
Confidence 32 3555555553
No 175
>KOG0951|consensus
Probab=99.24 E-value=1.7e-10 Score=143.84 Aligned_cols=175 Identities=17% Similarity=0.174 Sum_probs=101.6
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--------CCcEEEEeCC-ccHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--------NGPFLIIVPL-STLSNWSLE 624 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--------~~p~LIV~P~-sll~qW~~E 624 (1331)
...|.+-|-...... +....+.+|+.++|.|||.+|+.-|..-+..+.. ...+.-|+|. +++..|...
T Consensus 307 ~~sLNrIQS~v~daA---l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 307 KQSLNRIQSKVYDAA---LRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred chhhhHHHHHHHHHH---hcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 334666665555433 3356677999999999998876544433333221 1246778898 555889999
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHH---HhccCccccc-CccEEEEeCCccc-CCcchHHHHH
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYV---IKDKGPLAKL-HWKYMIIDEGHRM-KNHHCKLTHI 699 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l---~~~~~~l~~~-~~~~vIiDEaHri-kn~~sk~~~~ 699 (1331)
|.+|...+.+.+..-+.+...... ....-+|++||++.. .+..+...-. -++++||||.|-+ -+.++.+-.+
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESI 460 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESI 460 (1674)
T ss_pred HHhhccccCcEEEEecccccchhh---hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHH
Confidence 999987766655544433221111 123457999998865 2221211111 3589999999998 3344433222
Q ss_pred HHHhc-------cCCceeeeccCCCCCChHHHHHHHhhhcCCCC
Q psy1544 700 LNTFY-------VAPHRLLLTGTPLQNKLPELWALLNFLLPSIF 736 (1331)
Q Consensus 700 l~~~~-------~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~ 736 (1331)
+.... ...+.++||||- -|..|.-+.|..-.+++|
T Consensus 461 VaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 461 VARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred HHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 22111 134568999993 245666554433334443
No 176
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.5e-09 Score=134.43 Aligned_cols=129 Identities=22% Similarity=0.338 Sum_probs=97.0
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP- 630 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p- 630 (1331)
.|..+...|.-=...++ . +..--+..+||+|||.-.+.+..++...+ ++++||+|+.+| .|-.+.+.+++.
T Consensus 79 ~G~~~ws~QR~WakR~~---r-g~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLV---R-GKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHHHHHHHH---c-CCceEEEcCCCCchhHHHHHHHHHHHhcC---CeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 56688889987444444 3 44444556799999976555555543332 569999999777 888888888873
Q ss_pred ----CCcEEEecCC--hhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc
Q psy1544 631 ----SVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM 689 (1331)
Q Consensus 631 ----~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri 689 (1331)
...++ ||+. ...++.....+..++|+|+|||-.++.+....|.+.+||+|+||.++-+
T Consensus 152 ~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 152 AGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred cCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 33334 8887 4455666777888999999999999999999999999999999998865
No 177
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=3e-09 Score=133.76 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=98.1
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
....|+.++.+-+..+.+.|..|||-|.++...+.|..+|...|+++-+++.... +++.-|-. +++..+ .+-|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCC--cEEEec
Confidence 3467999999999999999999999999999999999999999999988887643 44433333 223322 368899
Q ss_pred cccccccCCC-------------------------------------CCCEEEEeCCCCCccccccccccccccCCCCce
Q psy1544 959 RAGGLGLNLQ-------------------------------------TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 959 ~aggeGLNL~-------------------------------------~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
..+|+|-|+. +.=+||.-..+-|-..+.|..||++|-|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999975 344789999999999999999999999988765
Q ss_pred EEE
Q psy1544 1002 RVL 1004 (1331)
Q Consensus 1002 ~V~ 1004 (1331)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 554
No 178
>KOG0349|consensus
Probab=99.13 E-value=4.4e-10 Score=126.33 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=86.5
Q ss_pred CeeEEEeccHHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE
Q psy1544 899 HRVLLFCQMTQLMNILEDYFSYRG---FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII 975 (1331)
Q Consensus 899 ~KVLIFsq~~~~ld~L~~~L~~~g---~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~ 975 (1331)
.|.||||.....+|-|++++..+| +.++.++|..++.+|.+-++.|+..+-. |||+|+++++|||++..-.+|+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEEE
Confidence 589999999999999999999874 6899999999999999999999865443 8999999999999999999999
Q ss_pred eCCCCCcccccccccccccc
Q psy1544 976 FDSDWNPHQDLQAQDRAHRI 995 (1331)
Q Consensus 976 ~D~~wNp~~~~QaiGRa~Ri 995 (1331)
.-.|-.-..|.+||||++|.
T Consensus 583 vtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EecCcccchhhhhhhccchh
Confidence 99999999999999999884
No 179
>KOG1472|consensus
Probab=99.12 E-value=3.9e-11 Score=146.53 Aligned_cols=101 Identities=29% Similarity=0.520 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+...+..+++.|.++.+ +|||..||+++++||||.+|++||||.||+-+|..+.|.....|..|+..||+||+
T Consensus 606 ~~~s~~~~il~~l~~h~~------awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr 679 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGD------AWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCR 679 (720)
T ss_pred hhhHHHHhHHhhhhcCCc------cCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhh
Confidence 455678889999999887 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
.||+..+..|+.|..|+.+|...+...
T Consensus 680 ~yn~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 680 MYNGSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccCCccchheecccchhhhhcchhhhh
Confidence 999999999999999999998776644
No 180
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.08 E-value=3.5e-09 Score=138.90 Aligned_cols=143 Identities=24% Similarity=0.256 Sum_probs=99.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhh
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
.+.+|++.|-+|+|||++++-++..+...... ..++|||--.-| .|-..+|..+........ .......+...+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~-~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKN-PKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCC-CeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 34579999999999999998888888777433 347888877666 899999999875544433 2223344555555
Q ss_pred ccCccEEEeeHHHHHhccC----cccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChH
Q psy1544 653 ASKFNVLLTTYEYVIKDKG----PLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLP 722 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~----~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~ 722 (1331)
...-.|+|||-+.+..... .....+.-+||+|||||--. ....+.+...+....-+++||||+...-.
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~~~~~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELAKLLKKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHHHHHHHHhccceEEEeeCCccccccc
Confidence 5566899999988765432 22344678999999999533 33344455555667789999999865433
No 181
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=4.3e-08 Score=122.25 Aligned_cols=120 Identities=16% Similarity=0.209 Sum_probs=99.5
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+..+.+-+..+.+.|..|||.|.+....+.|..+|...|+++.+++.... +++..|-. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCC--eEEEecc
Confidence 457999999999988899999999999999999999999999999999998633 44444433 333222 4689999
Q ss_pred ccccccCCCCCC--------EEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 960 AGGLGLNLQTAD--------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 960 aggeGLNL~~ad--------~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
.+|+|.|+.-.. +||....+-|-..+.|..||++|-|..-..+.|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999988765554
No 182
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=99.07 E-value=2.7e-10 Score=102.89 Aligned_cols=71 Identities=39% Similarity=0.594 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1544 299 VEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMA 369 (1331)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 369 (1331)
.+.+++.+..|..+|.+|+.|++||.++|+|+++++++++++|..||.+.+++++++.+|.+++||++|++
T Consensus 3 ~~~~~r~k~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 3 QEEPKRQKTHHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 34455666677777888888899999999999999999999999999999999999999999999999975
No 183
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=99.07 E-value=2.6e-10 Score=102.38 Aligned_cols=69 Identities=41% Similarity=0.680 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1544 301 AERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMA 369 (1331)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 369 (1331)
.+++.+..|-.||.+++.|++||.++++|+++++.+++++|..||.+.+++++++.+|.+++||++|++
T Consensus 5 ~e~r~k~h~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 5 EERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445556666677777788899999999999999999999999999999999999999999999999964
No 184
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.02 E-value=9.1e-09 Score=128.84 Aligned_cols=376 Identities=18% Similarity=0.186 Sum_probs=210.3
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCcE
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVNV 634 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v 634 (1331)
.|-+-|..++..+.+........+|...||+|||-+-+.+|...+..+ +-+||+||- ++..|....|...++ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 577789999998888653334458999999999999999999888775 349999998 777998899988775 667
Q ss_pred EEecCC--hhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc--CCcc-----hHHHHHHHHhcc
Q psy1544 635 VAYKGS--PHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM--KNHH-----CKLTHILNTFYV 705 (1331)
Q Consensus 635 ~~~~g~--~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri--kn~~-----sk~~~~l~~~~~ 705 (1331)
.++++. ...|.........+...|||-|-..+.--.. +..+|||||=|-- |-.+ ..-...++....
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 666665 3334444445567889999999887743222 4589999999975 3333 222222333323
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
.-..++-||||- ++.+++. ... .+.. -.+..+++.
T Consensus 349 ~~pvvLgSATPS---LES~~~~---~~g-~y~~-~~L~~R~~~------------------------------------- 383 (730)
T COG1198 349 NAPVVLGSATPS---LESYANA---ESG-KYKL-LRLTNRAGR------------------------------------- 383 (730)
T ss_pred CCCEEEecCCCC---HHHHHhh---hcC-ceEE-EEccccccc-------------------------------------
Confidence 455788999993 3322222 110 0000 000011110
Q ss_pred HHhhhCCCceEEEEEcC-------CCHH-HHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhh
Q psy1544 786 EVESQLPDKVEYIIKCD-------MSGL-QKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQN 857 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~-------ls~~-q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 857 (1331)
..+|........-. ||.. ...+...+......+.-.... ++..+ -+.+.|.|.+-...
T Consensus 384 ---a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRR------Gys~~-----l~C~~Cg~v~~Cp~ 449 (730)
T COG1198 384 ---ARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRR------GYAPL-----LLCRDCGYIAECPN 449 (730)
T ss_pred ---cCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccC------Cccce-----eecccCCCcccCCC
Confidence 01222111111110 2221 222222222211111110001 11100 12344555433222
Q ss_pred hHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHH
Q psy1544 858 IEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAE 935 (1331)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~ 935 (1331)
+...+.-+... +.-.+..++.-.-+-.-.+ +=|...|+++-. -...+++.|... +.++.++|++++..
T Consensus 450 Cd~~lt~H~~~-----~~L~CH~Cg~~~~~p~~Cp---~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~ 519 (730)
T COG1198 450 CDSPLTLHKAT-----GQLRCHYCGYQEPIPQSCP---ECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRR 519 (730)
T ss_pred CCcceEEecCC-----CeeEeCCCCCCCCCCCCCC---CCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccc
Confidence 11111101000 1111112222211111122 223345555543 234444545433 78999999998864
Q ss_pred H--HHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC--C----------ccccccccccccccCCCCce
Q psy1544 936 D--RGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW--N----------PHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 936 e--R~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w--N----------p~~~~QaiGRa~RiGQ~k~V 1001 (1331)
+ -..++..|.++..+ |||-|....-|+|+++...|.++|.|- + ...+.|..||++|-+-...|
T Consensus 520 k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~V 596 (730)
T COG1198 520 KGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEV 596 (730)
T ss_pred hhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeE
Confidence 4 46789999976655 699999999999999999998887653 2 24577999999998877777
Q ss_pred EEEEEeeCCCH
Q psy1544 1002 RVLRLMTVNSV 1012 (1331)
Q Consensus 1002 ~V~rli~~~Ti 1012 (1331)
.|-.+...+.+
T Consensus 597 vIQT~~P~hp~ 607 (730)
T COG1198 597 VIQTYNPDHPA 607 (730)
T ss_pred EEEeCCCCcHH
Confidence 77666655543
No 185
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.02 E-value=9.2e-09 Score=131.28 Aligned_cols=161 Identities=14% Similarity=0.160 Sum_probs=109.2
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHH-HHHHHHHHHcC
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLS-NWSLEFERWAP 630 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~-qW~~E~~k~~p 630 (1331)
-.+.+|-++|.+++.-+- .+.+++++..||+|||+++-..+..-+..+ ..++-..|...|. |=.++|..-+.
T Consensus 115 ~~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 115 EYPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred hCCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhh
Confidence 357799999999997555 588999999999999999887777655543 2389999997774 44556655443
Q ss_pred CC--cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcchH-HH-HHHHHhc
Q psy1544 631 SV--NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHCK-LT-HILNTFY 704 (1331)
Q Consensus 631 ~~--~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~sk-~~-~~l~~~~ 704 (1331)
++ -+-++.|+-. ......|++.|-+.+++- .+....-....||+||.|.|...... .+ ..+..+.
T Consensus 188 dv~~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 188 DVADMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhhccceeccee---------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 22 2344555432 234567777777888763 22222224578999999999665432 23 3344443
Q ss_pred cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhc
Q psy1544 705 VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNA 748 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~ 748 (1331)
+.-+.++||||- ++..+|..|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 455789999993 456778888875
No 186
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.98 E-value=2.3e-09 Score=122.40 Aligned_cols=221 Identities=18% Similarity=0.244 Sum_probs=126.1
Q ss_pred eEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCC---------cchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 795 VEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGK---------GGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 795 ~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
.++.+.+.|+..|+.+|+.+.......+.....+.... .....+...+.+|+.+|+||+|.-. ..+...
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~Llvd--H~mPk~ 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVD--HYMPKQ 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT----TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCcccccc--ccCccc
Confidence 36788999999999999988654332211111111111 2234566677889999999988521 111111
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhh-----hcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKL-----KSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDL 940 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l-----~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~ 940 (1331)
+. ...........|+||.+|..++..+ ...+.++||.++...++++|+.+|...++.|-+++|..-..+....
T Consensus 82 ll--~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~ 159 (297)
T PF11496_consen 82 LL--LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKV 159 (297)
T ss_dssp S---STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S
T ss_pred cc--cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccC
Confidence 10 0111223457799999999999999 6677899999999999999999999999999999997665554433
Q ss_pred H------------HHh-cCCCCCceEEEeeccccccc----cCCCCCCEEEEeCCCCCccccc-cccccccccCCCCceE
Q psy1544 941 L------------KKF-NAPDSEYFIFVLSTRAGGLG----LNLQTADTVIIFDSDWNPHQDL-QAQDRAHRIGQKNEVR 1002 (1331)
Q Consensus 941 i------------~~F-n~~~~~~~v~LlST~aggeG----LNL~~ad~VI~~D~~wNp~~~~-QaiGRa~RiGQ~k~V~ 1002 (1331)
- ... ..+...+.|+|++|+-.... ++-...|.||-||+.+++.... |.+-..+|-+ +.+-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~P 237 (297)
T PF11496_consen 160 PKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCP 237 (297)
T ss_dssp ----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--
T ss_pred CcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCc
Confidence 3 111 11234567778777655442 3334689999999999987643 3433334433 7899
Q ss_pred EEEEeeCCCHHHHHHHHHH
Q psy1544 1003 VLRLMTVNSVEERILAAAR 1021 (1331)
Q Consensus 1003 V~rli~~~TiEE~I~~~~~ 1021 (1331)
|++|+..+|+|.-++..-.
T Consensus 238 iirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 238 IIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp EEEEEETTSHHHHHHHHTT
T ss_pred EEEEeeCCCHHHHHHHccC
Confidence 9999999999998876543
No 187
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=98.97 E-value=1.9e-10 Score=103.06 Aligned_cols=57 Identities=49% Similarity=0.806 Sum_probs=44.2
Q ss_pred cCcccccCCCchhhhcccHHHHHHHHHHHHH-HHHhhcCCCcccccccccccchhhHHHH
Q psy1544 1100 KSRLIEVSELPDWLIKEDEEIEQWAFEAKEE-EKALHMGRGSRQRKQVDYTDSLTEKEWL 1158 (1331)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rg~R~rk~v~y~d~lte~e~l 1158 (1331)
++|||+++|||+||..+.+... ..+..+. .....+|||+|+||.|+|+|+|||+|||
T Consensus 17 p~RLm~e~ELPe~~~~d~~~~~--~~~~~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 17 PSRLMEESELPEWYREDIEEEL--EKEEEEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CccccchhhchHHHHhcchhhh--hhhhhhhccchhhcccccccccccccCCCCCHHHhC
Confidence 5699999999999999877652 1111111 1234689999999999999999999996
No 188
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.94 E-value=1.8e-08 Score=128.69 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=53.1
Q ss_pred CccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcchHH--HHHHHHhccCCceeeeccCCCCC--ChHHHHHHH
Q psy1544 655 KFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHCKL--THILNTFYVAPHRLLLTGTPLQN--KLPELWALL 728 (1331)
Q Consensus 655 ~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~sk~--~~~l~~~~~~~~rllLTgTPlqN--~l~EL~~ll 728 (1331)
...|+++|...+..|. +.+.--.+..|||||||++.+..+.. .+..+...+..+..++|+.|-.. +...+-..+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vm 86 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKM 86 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHH
Confidence 4578999999888874 34444468999999999997655432 23333333456789999999763 344555555
Q ss_pred hhhcCC
Q psy1544 729 NFLLPS 734 (1331)
Q Consensus 729 ~fL~p~ 734 (1331)
.-|...
T Consensus 87 k~L~i~ 92 (814)
T TIGR00596 87 RNLFLR 92 (814)
T ss_pred HHhCcC
Confidence 555433
No 189
>KOG0948|consensus
Probab=98.88 E-value=3.9e-08 Score=117.87 Aligned_cols=361 Identities=17% Similarity=0.199 Sum_probs=194.7
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH-HHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN-WSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k~~p~ 631 (1331)
.-.+|-|+|..+|.. +.++..+++..-|..|||++|=-.|+.-+.. +.+++.-.|-..|+| =.+||..-+.+
T Consensus 126 YPF~LDpFQ~~aI~C----idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 126 YPFTLDPFQSTAIKC----IDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred CCcccCchHhhhhhh----hcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 345899999999853 4567888888889999999976555544433 234788888877754 45677665555
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc----cCcccccCccEEEEeCCcccCCcchHH-H-HHHHHhcc
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD----KGPLAKLHWKYMIIDEGHRMKNHHCKL-T-HILNTFYV 705 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~~~~~vIiDEaHrikn~~sk~-~-~~l~~~~~ 705 (1331)
+... .|.-. .......+|.|-+.++.- ......+.| ||+||.|.|+...... | ..+-.+..
T Consensus 199 VGLM--TGDVT---------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~ 265 (1041)
T KOG0948|consen 199 VGLM--TGDVT---------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPD 265 (1041)
T ss_pred ccee--eccee---------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccc
Confidence 4433 33211 133567888998887753 233444555 9999999998765321 1 22333445
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
.-+-++||||- .+...|.+|++.-..
T Consensus 266 ~vr~VFLSATi--------------------PNA~qFAeWI~~ihk---------------------------------- 291 (1041)
T KOG0948|consen 266 NVRFVFLSATI--------------------PNARQFAEWICHIHK---------------------------------- 291 (1041)
T ss_pred cceEEEEeccC--------------------CCHHHHHHHHHHHhc----------------------------------
Confidence 66779999993 345678888765211
Q ss_pred HHhhhCCCceEEEEE--cCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhh
Q psy1544 786 EVESQLPDKVEYIIK--CDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFS 863 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~--~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 863 (1331)
...++|+ ...|++|.-+|-.=-.......+. .+.-....+...+.-|+..-..+--. ..
T Consensus 292 --------QPcHVVYTdyRPTPLQHyifP~ggdGlylvVDe-----k~~FrednF~~am~~l~~~~~~~~~~------~~ 352 (1041)
T KOG0948|consen 292 --------QPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDE-----KGKFREDNFQKAMSVLRKAGESDGKK------KA 352 (1041)
T ss_pred --------CCceEEeecCCCCcceeeeecCCCCeeEEEEec-----ccccchHHHHHHHHHhhccCCCcccc------cc
Confidence 1122333 234555544442110000011110 01111122222332333222111000 00
Q ss_pred hccCCCCcccCCccccccchhHHHHHhhhhh-hcCCCeeEEEeccHHHHHHHHHHHHhcCCe------------------
Q psy1544 864 DHVGGSGIVSGPDLYRVSGKFELLDRILPKL-KSTGHRVLLFCQMTQLMNILEDYFSYRGFK------------------ 924 (1331)
Q Consensus 864 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l-~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~------------------ 924 (1331)
+.-+..|...+ ...+.- -+.++++.+ ......|||||-++..+..++--+....++
T Consensus 353 ~~k~~kG~~~~----~~~~~s-~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 353 NKKGRKGGTGG----KGPGDS-DIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred ccccccCCcCC----CCCCcc-cHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 00000000000 111110 122222222 244568999998887777665554432221
Q ss_pred ---------------------EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEe-----CC
Q psy1544 925 ---------------------YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIF-----DS 978 (1331)
Q Consensus 925 ---------------------~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~-----D~ 978 (1331)
+..-||+.=+--++-+---|+ ++=+.| |.+|...+.|||.++ .||+|- |-
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFq--EGLvKv-LFATETFsiGLNMPA-kTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQ--EGLVKV-LFATETFSIGLNMPA-KTVVFTAVRKFDG 503 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHh--ccHHHH-HHhhhhhhhccCCcc-eeEEEeeccccCC
Confidence 344566655555555555676 333444 899999999999995 455553 32
Q ss_pred ---CC-CccccccccccccccCCCCceEEEEEeeCCCHHHHH
Q psy1544 979 ---DW-NPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERI 1016 (1331)
Q Consensus 979 ---~w-Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I 1016 (1331)
-| +...|+|.-|||+|-|-...-.|+ ++....++..+
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivI-lmiDekm~~~~ 544 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVI-LMIDEKMEPQV 544 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEE-EEecCcCCHHH
Confidence 22 678899999999999965543333 33344444443
No 190
>KOG0950|consensus
Probab=98.87 E-value=3.9e-08 Score=121.81 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=89.9
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEeCCccHHH-HHHHHHHHc--CC
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIA-LITYLMEKKKVNGPFLIIVPLSTLSN-WSLEFERWA--PS 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~-li~~l~~~~~~~~p~LIV~P~sll~q-W~~E~~k~~--p~ 631 (1331)
+++++|.+.+. ......+.|.|.+.+++-|||+++=- .+..++... +-+|.|.|-..+.+ =..++..+. -+
T Consensus 223 ~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r---r~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR---RNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh---hceeEecceeehhHHHHhhhhhhccccC
Confidence 57777777764 23344688899999999999998643 333444433 23788888755433 333344443 24
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccc----cCccEEEEeCCcccCC--cchH----HHHHHH
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAK----LHWKYMIIDEGHRMKN--HHCK----LTHILN 701 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~----~~~~~vIiDEaHrikn--~~sk----~~~~l~ 701 (1331)
+.+-.|.|...-. .....-.|.|+|-+.-......|-. ....+|||||-|.+.. .+.- +.+++.
T Consensus 298 ~~ve~y~g~~~p~------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPE------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred CcchhhcccCCCC------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 6666666642211 1123457999999876544322211 1357999999999843 3332 223332
Q ss_pred Hhcc-CCceeeeccCCCCCC
Q psy1544 702 TFYV-APHRLLLTGTPLQNK 720 (1331)
Q Consensus 702 ~~~~-~~~rllLTgTPlqN~ 720 (1331)
.... .-..+++|||-.+|.
T Consensus 372 ~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 372 ENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred hccccceeEeeeecccCChH
Confidence 2211 224699999965443
No 191
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=2.2e-07 Score=120.23 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFER 627 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k 627 (1331)
..+||.|.+....++..+..+.+++|-.+||+|||+.+|+.+.......+...++++.+.+ +.+.|-.+|+++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3469999999999999999999999999999999999887766655543333446666666 667899999988
No 192
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.84 E-value=5.6e-07 Score=113.33 Aligned_cols=85 Identities=11% Similarity=0.180 Sum_probs=67.5
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCH-HHHHHHHHHhcCCCCCceEEEeec
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKA-EDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~-~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
...|+.++.+-+..+...|..|||-|.+....+.|..+|...|+++-+++..... ++-..+|..= +..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCC--cEEEec
Confidence 3468888888888888999999999999999999999999999999999987533 3344455542 2222 368899
Q ss_pred cccccccCCC
Q psy1544 959 RAGGLGLNLQ 968 (1331)
Q Consensus 959 ~aggeGLNL~ 968 (1331)
..+|+|.|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997743
No 193
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.82 E-value=9.9e-07 Score=116.94 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHHHhhhhhh-cCCCeeEEEeccHHHHHHHHHHHHhcCC--eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q psy1544 886 LLDRILPKLK-STGHRVLLFCQMTQLMNILEDYFSYRGF--KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG 962 (1331)
Q Consensus 886 ~L~~lL~~l~-~~g~KVLIFsq~~~~ld~L~~~L~~~g~--~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~agg 962 (1331)
.+.+.|..+. ..+.++|||+.+...+..+...|..... .+..+.-+++...|..+++.|+..... +|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 4444444433 4556899999999999999998875422 133333233334688999999864333 578889999
Q ss_pred cccCCCC--CCEEEEeCCCC-Ccc
Q psy1544 963 LGLNLQT--ADTVIIFDSDW-NPH 983 (1331)
Q Consensus 963 eGLNL~~--ad~VI~~D~~w-Np~ 983 (1331)
||+|+++ +..||+.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 9999997 58899998887 443
No 194
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.77 E-value=1.4e-06 Score=113.39 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=64.2
Q ss_pred HHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecccccccc
Q psy1544 886 LLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGL 965 (1331)
Q Consensus 886 ~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGL 965 (1331)
.+.+.+..+...+.++||++.+..++..+...|....+.. ...|... .|..++++|+..+.. +|+.|....||+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4444454455667799999999999999998887665444 5556433 356799999864333 688889999999
Q ss_pred CCCC--CCEEEEeCCCC
Q psy1544 966 NLQT--ADTVIIFDSDW 980 (1331)
Q Consensus 966 NL~~--ad~VI~~D~~w 980 (1331)
|++. +..||+.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 9973 56677877664
No 195
>KOG0949|consensus
Probab=98.74 E-value=2.1e-07 Score=114.57 Aligned_cols=162 Identities=19% Similarity=0.186 Sum_probs=99.5
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHH-H-cCCC
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFER-W-APSV 632 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k-~-~p~~ 632 (1331)
..-.+|.+-+ .....+...+|..++-.|||.+.--++...++... .+-|+.|+|+..+ .|-..++.. | ++.+
T Consensus 511 ~Pd~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-SDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-CCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 3456787765 34456778899999999999998888887777654 4558889998554 555555543 2 2222
Q ss_pred cE-EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc---cccc--CccEEEEeCCcccCCcch-HHHHHHHHhcc
Q psy1544 633 NV-VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP---LAKL--HWKYMIIDEGHRMKNHHC-KLTHILNTFYV 705 (1331)
Q Consensus 633 ~v-~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~--~~~~vIiDEaHrikn~~s-k~~~~l~~~~~ 705 (1331)
.. +..-|.-.. . -.+....+.|+||-++.+..-.-. -.++ +..+||+||.|.+.+... ..+..+-.+ -
T Consensus 586 ~rg~sl~g~ltq--E--Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l-i 660 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQ--E--YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL-I 660 (1330)
T ss_pred ccchhhHhhhhH--H--hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-c
Confidence 11 111111110 0 011223678999999877542111 1111 468999999999988764 444444333 3
Q ss_pred CCceeeeccCCCCCChHHHHHHHh
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLN 729 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~ 729 (1331)
..-.|+|||| ++|+..+..-++
T Consensus 661 ~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 661 PCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CCCeeEEecc--cCCHHHHHHHHH
Confidence 4467899999 566666655555
No 196
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.74 E-value=9.3e-08 Score=107.24 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=135.4
Q ss_pred ccCCccHHHHHHHHHHHHHhcC------CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC-CccHHHHHHHH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNN------NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP-LSTLSNWSLEF 625 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~------~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P-~sll~qW~~E~ 625 (1331)
-.+.|-.-|+++|-++...... +.|-+|+|.+|.||.-++.++|...+..+. .+ .|+|.. ..+...-.+.+
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr-~r-~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR-KR-AVWVSVSNDLKYDAERDL 111 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC-Cc-eEEEECChhhhhHHHHHH
Confidence 4678999999999999876553 445599999999999999999988776653 33 455554 55666666677
Q ss_pred HHHcCC-CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc-------Cccccc-Cc------cEEEEeCCcccC
Q psy1544 626 ERWAPS-VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK-------GPLAKL-HW------KYMIIDEGHRMK 690 (1331)
Q Consensus 626 ~k~~p~-~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~-------~~l~~~-~~------~~vIiDEaHrik 690 (1331)
...... +.+..+...+.. ....-...|+++||..++... ..|..+ .| .+||+||||+++
T Consensus 112 ~DIG~~~i~v~~l~~~~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKYG------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HHhCCCcccceechhhccC------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 655422 222222111000 011235679999999998752 222221 22 489999999999
Q ss_pred Ccch------HHHHHHH---HhccCCceeeeccCCCCCChHHHHHHHh--hhc-CCCCCChhHHHHHhhccccccccccc
Q psy1544 691 NHHC------KLTHILN---TFYVAPHRLLLTGTPLQNKLPELWALLN--FLL-PSIFKSVSTFEQWFNAPFATTGEKVE 758 (1331)
Q Consensus 691 n~~s------k~~~~l~---~~~~~~~rllLTgTPlqN~l~EL~~ll~--fL~-p~~~~~~~~F~~~f~~p~~~~~~~~~ 758 (1331)
|..+ +...++. ......+.+..|||.... +..|-.+-. +-. ...|.+..+|..-+.. .+.
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~----gGv--- 257 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEK----GGV--- 257 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHHh----cCc---
Confidence 9765 3334433 223456789999998632 222211111 111 1234455555443332 110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHH
Q psy1544 759 LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRH 813 (1331)
Q Consensus 759 ~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~ 813 (1331)
....++.. .-..+..+++|.. .+-.....++.+.|++.+..+|+.
T Consensus 258 ----~amE~vA~-dlKa~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 ----GAMEMVAM-DLKARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ----hHHHHHHH-HHHhcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 00011110 0011223333332 244556678889999999999974
No 197
>PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif. QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.74 E-value=8.1e-09 Score=78.42 Aligned_cols=36 Identities=58% Similarity=0.894 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhccCCCCCChhhhhccc
Q psy1544 90 HAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQ 125 (1331)
Q Consensus 90 ~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~ 125 (1331)
|+||+.|+++||+||+|||+|++|.|+|+.++.++.
T Consensus 1 s~FT~~Ql~~L~~Qi~ayK~l~~~~pVP~~l~~~I~ 36 (37)
T PF08880_consen 1 SPFTPAQLQELRAQILAYKYLARNQPVPPQLQQAIQ 36 (37)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhhh
Confidence 589999999999999999999999999999998764
No 198
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.74 E-value=3.5e-06 Score=105.27 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 561 QIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
|.+.+.++...+.++...++-.+||+|||+..+..+..+.... ...++||++|+..| .|+..++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 7888888999888888888889999999998765554333321 24679999999666 78888776554
No 199
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=1.7e-06 Score=109.80 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=98.0
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+.++..-+..+...|..|||-|.++.....|..+|...|+++-+++.... +++.-|=.-. +..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~A-G~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEA-GQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhc-CCCC--cEEEecc
Confidence 467999999999999999999999999999999999999999999988877644 4443333222 2222 3688999
Q ss_pred ccccccCCC--------CCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 960 AGGLGLNLQ--------TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 960 aggeGLNL~--------~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
.+|+|-|+. +.=+||.-..+-|...+.|..||++|-|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999999987 456889999999999999999999999987765544
No 200
>KOG0955|consensus
Probab=98.71 E-value=1.7e-08 Score=129.01 Aligned_cols=104 Identities=27% Similarity=0.443 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..+...++.+++.+.. +|. ...|..|++..++|||+++|++||||.+|+.++..+.|.++++|.+|+.||+.||
T Consensus 564 ~p~~kLl~~~l~~lq~-kD~-----~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc 637 (1051)
T KOG0955|consen 564 NPFKKLLQKSLDKLQK-KDS-----YGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNC 637 (1051)
T ss_pred chHHHHHHHHHHHhhc-ccc-----cCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHH
Confidence 3556677778887766 443 5599999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
+.||.-+..+|.+|..+++.....+.++..
T Consensus 638 ~~yn~~dtv~~r~av~~~e~~~~~~~~ark 667 (1051)
T KOG0955|consen 638 MEYNAKDTVYYRAAVRLRELIKKDFRNARK 667 (1051)
T ss_pred HHhhccCeehHhhhHHHHhhhhhHHHhccc
Confidence 999999999999999999998887776544
No 201
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.69 E-value=1.1e-06 Score=113.39 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=63.9
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCC-eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCC--CCE
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGF-KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQT--ADT 972 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~-~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~--ad~ 972 (1331)
..+.++|||+.+-..|..+...|..... -.+...|... +..+++.|.+...+ .|++.+....||+|+++ +..
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 4455899999999999999999987765 3455556555 44899999864442 57899999999999997 689
Q ss_pred EEEeCCCCC
Q psy1544 973 VIIFDSDWN 981 (1331)
Q Consensus 973 VI~~D~~wN 981 (1331)
||+.-.||-
T Consensus 552 vvI~~lPfp 560 (654)
T COG1199 552 VVIVGLPFP 560 (654)
T ss_pred EEEEecCCC
Confidence 999988874
No 202
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=1.3e-05 Score=101.11 Aligned_cols=85 Identities=13% Similarity=0.219 Sum_probs=68.0
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCC-CHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTT-KAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~-~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
...|+.++.+-+..+.+.|..|||-|.++.....|...|...|+++-+++... ..++-..+|..= +..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCCC--cEEEec
Confidence 36799999988888999999999999999999999999999999999999873 333444455543 2222 368899
Q ss_pred cccccccCCC
Q psy1544 959 RAGGLGLNLQ 968 (1331)
Q Consensus 959 ~aggeGLNL~ 968 (1331)
..+|+|-|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999997744
No 203
>KOG1513|consensus
Probab=98.64 E-value=5.6e-07 Score=108.26 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=68.0
Q ss_pred HHhcCCCCCceEEEeeccccccccCCCCCCEE--------EEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 942 KKFNAPDSEYFIFVLSTRAGGLGLNLQTADTV--------IIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 942 ~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~V--------I~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
++|-+ +...|.||| .|++-||.||+-.+| |-+++||+...-+|-.||+||-.|.+--..+.||+.=--|
T Consensus 851 qrFM~--GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 851 QRFMD--GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred hhhcc--ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 45663 444555554 688999999974433 5589999999999999999999999887777788877778
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy1544 1014 ERILAAARYKLNMDEKVIQA 1033 (1331)
Q Consensus 1014 E~I~~~~~~K~~l~~~vi~~ 1033 (1331)
.+......+++.-..+.-.+
T Consensus 928 rRFAS~VAKRLESLGALThG 947 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHG 947 (1300)
T ss_pred hHHHHHHHHHHHhhcccccc
Confidence 88877777777766655443
No 204
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.63 E-value=2.1e-08 Score=98.08 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcCCCCCccccccccccCc--CCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1221 TLKKIMRVVIKYTDSDGRVLSEPFIKLPSR--KELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1221 ~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~--~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
.|..++..+.++.. +..+++|..||+. ..+||||++||+||||+||+++|.++.++....|.. +.....|...|
T Consensus 4 ~~~~~l~~l~~~~~---~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~-~~~~~~~~~~~ 79 (114)
T cd05494 4 ALERVLRELKRHRR---NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQI-VQEDPADKQID 79 (114)
T ss_pred HHHHHHHHHHHhhh---CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccc-ccccccccccc
Confidence 45555555555442 4459999999999 899999999999999999999999975533333322 33333444444
Q ss_pred c
Q psy1544 1299 N 1299 (1331)
Q Consensus 1299 N 1299 (1331)
+
T Consensus 80 ~ 80 (114)
T cd05494 80 D 80 (114)
T ss_pred c
Confidence 3
No 205
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.63 E-value=2.5e-08 Score=95.55 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=39.4
Q ss_pred CCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q psy1544 1262 RPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEEL 1302 (1331)
Q Consensus 1262 ~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~ 1302 (1331)
.||||+||++||.+|.|.++.+|.+|++|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 69999999999999999999999999999999999999873
No 206
>KOG0920|consensus
Probab=98.60 E-value=3.4e-06 Score=107.21 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=91.3
Q ss_pred chhHHHHHhhhhhhcC--CCeeEEEeccHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q psy1544 882 GKFELLDRILPKLKST--GHRVLLFCQMTQLMNILEDYFSYR-------GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYF 952 (1331)
Q Consensus 882 ~K~~~L~~lL~~l~~~--g~KVLIFsq~~~~ld~L~~~L~~~-------g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~ 952 (1331)
-...++..++..+.+. ...||||-.-...+..+...|... .+-+..+|++++..+.+.+ |+.+-.+++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 4556666666655443 248999999988888877777532 3667889999998777655 565556667
Q ss_pred EEEeeccccccccCCCCCCEEEE--------eCCCC----------CccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 953 IFVLSTRAGGLGLNLQTADTVII--------FDSDW----------NPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 953 v~LlST~aggeGLNL~~ad~VI~--------~D~~w----------Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
-+|++|..+..+|.+.++-+||- ||+.- +-+.-.||.|||+|. .+-.+|++++..-.+
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhh
Confidence 78999999999999999877763 44332 335567999999885 566888888876444
No 207
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.58 E-value=4e-06 Score=107.06 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=80.1
Q ss_pred CeeEEEeccHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEE
Q psy1544 899 HRVLLFCQMTQLMNILEDYFSY----RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVI 974 (1331)
Q Consensus 899 ~KVLIFsq~~~~ld~L~~~L~~----~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI 974 (1331)
.-+|||-.-...++.....|.. ..+.++-++|.++.++..+ -|+....+.+-+++||.++..+|.+.++.+||
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 4699999988888888888876 3588999999999988877 45543344343689999999999999999987
Q ss_pred E--------eCCCC----------CccccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 975 I--------FDSDW----------NPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 975 ~--------~D~~w----------Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
= ||+-- +-+...||-|||+|. .+-..|||++++..+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHHHHH
Confidence 2 22221 223345777777775 467888998875444
No 208
>KOG0926|consensus
Probab=98.52 E-value=1.6e-05 Score=96.59 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=56.8
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE--------eC---------CCC-Ccccc
Q psy1544 924 KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII--------FD---------SDW-NPHQD 985 (1331)
Q Consensus 924 ~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~--------~D---------~~w-Np~~~ 985 (1331)
-++-+..-.+.++..++ |.....+.+.++++|.++...|.++++.+||= || .+| +-+.-
T Consensus 606 yvLPLYSLLs~~~Q~RV---F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASa 682 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRV---FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASA 682 (1172)
T ss_pred EEeehhhhcCHHHhhhh---ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeecccc
Confidence 35556666666655444 55445567888999999999999999999873 33 334 44556
Q ss_pred ccccccccccCCCCceEEEEEeeC
Q psy1544 986 LQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 986 ~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
.||-|||+|+|- -+.|||+..
T Consensus 683 dQRAGRAGRtgp---GHcYRLYSS 703 (1172)
T KOG0926|consen 683 DQRAGRAGRTGP---GHCYRLYSS 703 (1172)
T ss_pred chhccccCCCCC---Cceeehhhh
Confidence 699999999884 467777653
No 209
>KOG0922|consensus
Probab=98.51 E-value=9.1e-06 Score=98.36 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=76.6
Q ss_pred eeEEEeccHHHHHHHHHHHHhc----CC----eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCC
Q psy1544 900 RVLLFCQMTQLMNILEDYFSYR----GF----KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTAD 971 (1331)
Q Consensus 900 KVLIFsq~~~~ld~L~~~L~~~----g~----~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad 971 (1331)
-+|||=.-.+..+.+...|... +- -++-++|+++.++..++ |.....+++-+++||..+...|.+.+..
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5899988888877777777654 21 25679999998876654 5544446677799999999999999988
Q ss_pred EEEEe----CCCCCcc-----------ccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 972 TVIIF----DSDWNPH-----------QDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 972 ~VI~~----D~~wNp~-----------~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
+||=- -..|||. .-.||.=|++|.|.+.+..+|||+++.-.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 88621 1123441 222344445555556788999999987653
No 210
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.49 E-value=1.1e-06 Score=112.38 Aligned_cols=187 Identities=20% Similarity=0.195 Sum_probs=115.7
Q ss_pred cHHHHHHHHHHHHHhcC----------------------------------CCceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 558 KEYQIKGLEWMVSLFNN----------------------------------NLNGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~----------------------------------~~~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.|||.+||..++..+.. ..+..+.++||+|||.+++..|.+|....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 68999999888876521 13567899999999999999999987775
Q ss_pred CCCCcEEEEeCCccH-HHHHH---------HHHHHcCC--CcEEEecCCh---hH----HHHHHHHhhcc-----CccEE
Q psy1544 604 KVNGPFLIIVPLSTL-SNWSL---------EFERWAPS--VNVVAYKGSP---HL----RKTLQAQMKAS-----KFNVL 659 (1331)
Q Consensus 604 ~~~~p~LIV~P~sll-~qW~~---------E~~k~~p~--~~v~~~~g~~---~~----r~~~~~~~~~~-----~~~Vv 659 (1331)
+. ..+|||||...+ ..... .|...+.+ +.+.+|.... .. -..+....... ..+|+
T Consensus 88 ~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Il 166 (986)
T PRK15483 88 GL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVL 166 (986)
T ss_pred CC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEE
Confidence 54 459999999555 22222 22222222 4455665432 11 12223333333 57999
Q ss_pred EeeHHHHHhccC--cc------cc--c-------CccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCC----
Q psy1544 660 LTTYEYVIKDKG--PL------AK--L-------HWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQ---- 718 (1331)
Q Consensus 660 ItTye~l~~~~~--~l------~~--~-------~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlq---- 718 (1331)
|+|.+.+.++.. .. .. . .--+||+||+|++... .+.+.++..+ ...++|..|||--.
T Consensus 167 v~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~l-npl~~lrysAT~~~~~~~ 244 (986)
T PRK15483 167 LINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEAL-KPQMIIRFGATFPDITEG 244 (986)
T ss_pred EEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhc-CcccEEEEeeecCCcccc
Confidence 999998876421 10 11 1 1248999999999663 3455667665 56678889999532
Q ss_pred ---C--ChHHHHHHHhhhcCCCCCChhHHHHHhhccccc
Q psy1544 719 ---N--KLPELWALLNFLLPSIFKSVSTFEQWFNAPFAT 752 (1331)
Q Consensus 719 ---N--~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~ 752 (1331)
| ...+.++++--| ...++|.+...+.+..
T Consensus 245 ~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V 278 (986)
T PRK15483 245 KGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDI 278 (986)
T ss_pred ccccccccccccCceeec-----CHHHHHHhCCcceEEE
Confidence 0 112345544433 4567777766665443
No 211
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.46 E-value=4.7e-06 Score=104.00 Aligned_cols=112 Identities=20% Similarity=0.363 Sum_probs=81.0
Q ss_pred hhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q psy1544 883 KFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG 962 (1331)
Q Consensus 883 K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~agg 962 (1331)
...+...++.. ...|++|.|||.....++++++++...+.+++.++|..+..+ ++.|. .+.| ++=|.+.+
T Consensus 268 ~~tF~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceEE
Confidence 33444445444 356889999999999999999999999999999999877663 34454 4666 55566888
Q ss_pred cccCCCC--CCEEEEe--CCCCCccc--cccccccccccCCCCceEEEE
Q psy1544 963 LGLNLQT--ADTVIIF--DSDWNPHQ--DLQAQDRAHRIGQKNEVRVLR 1005 (1331)
Q Consensus 963 eGLNL~~--ad~VI~~--D~~wNp~~--~~QaiGRa~RiGQ~k~V~V~r 1005 (1331)
.||++-. .|.|..| .....|.. ..|.+||+..++. ++++||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 8999864 5666655 33344544 5899999998874 5566664
No 212
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.45 E-value=5.1e-05 Score=97.76 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=62.3
Q ss_pred HHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHhcC----CCCCceEEEeecc
Q psy1544 885 ELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-GFKYMRLDGTTKAEDRGDLLKKFNA----PDSEYFIFVLSTR 959 (1331)
Q Consensus 885 ~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g~~~~~idG~~~~~eR~~~i~~Fn~----~~~~~~v~LlST~ 959 (1331)
..+.+.|..+...+.++|||+.+-..+..+...|... ++. +.+.|.. .|..+++.|.. +++. +|+++.
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~---VL~g~~ 593 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGS---VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCe---EEEEec
Confidence 3444444444445556899999999999999888643 333 4445642 57788877753 2222 577889
Q ss_pred ccccccCCCC--CCEEEEeCCCC
Q psy1544 960 AGGLGLNLQT--ADTVIIFDSDW 980 (1331)
Q Consensus 960 aggeGLNL~~--ad~VI~~D~~w 980 (1331)
...+|||+++ +..||+.-.|+
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccccCCCCceEEEEEEcCCC
Confidence 9999999986 89999988776
No 213
>KOG0924|consensus
Probab=98.42 E-value=1.1e-05 Score=96.55 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCC----CCCc--------------c
Q psy1544 922 GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDS----DWNP--------------H 983 (1331)
Q Consensus 922 g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~----~wNp--------------~ 983 (1331)
++.++-|...++.+-..+ -|+...++++-+|++|..+...|.+++..+||=... -+|| +
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 677888888888765544 366556677778999999999999999988874321 2333 3
Q ss_pred ccccccccccccCCCCceEEEEEeeCCCHHHHHHH
Q psy1544 984 QDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILA 1018 (1331)
Q Consensus 984 ~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~ 1018 (1331)
.-.||-|||+| +.+-..||++|+++....++.
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCC---CCCcceeeehhhhHHHhhccc
Confidence 33455555555 567889999999877665543
No 214
>KOG0008|consensus
Probab=98.41 E-value=2e-07 Score=117.99 Aligned_cols=78 Identities=32% Similarity=0.443 Sum_probs=73.0
Q ss_pred cccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q psy1544 1240 LSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFT 1317 (1331)
Q Consensus 1240 ~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~ 1317 (1331)
-||+|.++|+++-.||||.+|++||||.+|.+++..+.|.+.++|.+|+.+|+.||..||+..|.+..-|.++-++..
T Consensus 1399 es~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~ 1476 (1563)
T KOG0008|consen 1399 ESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGL 1476 (1563)
T ss_pred hhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999999999998887777666544
No 215
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.39 E-value=2.6e-06 Score=85.57 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCceEEecCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhc
Q psy1544 575 NLNGILADEMGLGKTIQTIA-LITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKA 653 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~-li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 653 (1331)
+.--+|-.-+|+|||-..+. ++...+.. ++++||+.|+.++. +|..+...+..+..- .....+ ...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~---~~rvLvL~PTRvva---~em~~aL~~~~~~~~-t~~~~~------~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR---RLRVLVLAPTRVVA---EEMYEALKGLPVRFH-TNARMR------THF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT---T--EEEEESSHHHH---HHHHHHTTTSSEEEE-STTSS----------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc---cCeEEEecccHHHH---HHHHHHHhcCCcccC-ceeeec------ccc
Confidence 34457778899999987654 33333333 45699999998873 333344334443222 211111 123
Q ss_pred cCccEEEeeHHHHHhc-cCcccccCccEEEEeCCcccCCcchHHHHHHHHhccC--CceeeeccCCC
Q psy1544 654 SKFNVLLTTYEYVIKD-KGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA--PHRLLLTGTPL 717 (1331)
Q Consensus 654 ~~~~VvItTye~l~~~-~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~--~~rllLTgTPl 717 (1331)
++-.|-+.+|.++... .......+|++||+||||-.-..+-...-.+..+... ...|++||||-
T Consensus 71 g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred CCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 4566788888876542 2234446899999999998533222222233333222 36799999993
No 216
>KOG0008|consensus
Probab=98.33 E-value=5.4e-07 Score=114.28 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+.-.+..|.+.+....+ ..+|..||+.+.++|||.||+.||++.++|+.|....|.+-++|++|+.||++|..
T Consensus 1261 ~~ss~l~~i~n~~~~~~~------t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~ 1334 (1563)
T KOG0008|consen 1261 SLSSILETIINQARSSPN------TYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNST 1334 (1563)
T ss_pred ecccchHHHHHHHhcCCC------CcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchh
Confidence 345567777777766554 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHH
Q psy1544 1297 IYNEELSLIHEDSVVLESVF 1316 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f 1316 (1331)
+||++-+.+...+..+-..+
T Consensus 1335 ~yng~~~~~t~~~q~mls~~ 1354 (1563)
T KOG0008|consen 1335 KYNGPLASLTRQQQSMLSLC 1354 (1563)
T ss_pred hhcCchHHHHHHHHHHHHHH
Confidence 99999998888776654443
No 217
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.21 E-value=1.1e-05 Score=92.90 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=54.1
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV---NGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~---~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
..+.||.|.+-+..+...+.++..+|+-.+||+|||+..+..+.......+. ..+++|++++..+ .+-..++++.
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3456999999999999999999999999999999999987666443333222 1257777777443 4444555543
No 218
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.21 E-value=1.1e-05 Score=92.90 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=54.1
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC---CCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV---NGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~---~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
..+.||.|.+-+..+...+.++..+|+-.+||+|||+..+..+.......+. ..+++|++++..+ .+-..++++.
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3456999999999999999999999999999999999987666443333222 1257777777443 4444555543
No 219
>PHA03247 large tegument protein UL36; Provisional
Probab=98.20 E-value=1.2e-05 Score=107.60 Aligned_cols=8 Identities=25% Similarity=0.846 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q psy1544 618 LSNWSLEF 625 (1331)
Q Consensus 618 l~qW~~E~ 625 (1331)
+.-|...+
T Consensus 3004 ~~~w~~~~ 3011 (3151)
T PHA03247 3004 VSSWASSL 3011 (3151)
T ss_pred cchhhhhc
Confidence 34455443
No 220
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.15 E-value=0.00057 Score=88.02 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=35.3
Q ss_pred CceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCc
Q psy1544 950 EYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 1000 (1331)
Q Consensus 950 ~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~ 1000 (1331)
+..+++|+|.+...|+|+- +|.+|. |+ -.....+|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~-~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DP-SSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-cc-CcHHHHHHHhhcccccccCCC
Confidence 3456799999999999985 555543 22 234568899999999997543
No 221
>KOG0923|consensus
Probab=98.14 E-value=0.0014 Score=79.09 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=68.8
Q ss_pred eeEEEeccHHHHHHHHHHHHh----c-----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCC
Q psy1544 900 RVLLFCQMTQLMNILEDYFSY----R-----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTA 970 (1331)
Q Consensus 900 KVLIFsq~~~~ld~L~~~L~~----~-----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~a 970 (1331)
-+|||-.-.+.+......|.. . .+-++-|+.+.+.+....+ |...-.+.+-++++|..+...|.+.++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 588887766655444444432 2 3457888999998776655 442223455568899999999999998
Q ss_pred CEEEEeCCCC------Cc--------------cccccccccccccCCCCceEEEEEeeC
Q psy1544 971 DTVIIFDSDW------NP--------------HQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 971 d~VI~~D~~w------Np--------------~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
.+|| ||.+ || +.-.||-|||+|.|-.+ .|||++.
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK---CfRLYt~ 605 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK---CFRLYTA 605 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc---eEEeech
Confidence 8887 4433 33 34568999998887554 5666663
No 222
>KOG1472|consensus
Probab=98.14 E-value=1.3e-06 Score=107.69 Aligned_cols=70 Identities=33% Similarity=0.599 Sum_probs=64.6
Q ss_pred ccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q psy1544 1241 SEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSV 1310 (1331)
Q Consensus 1241 ~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~ 1310 (1331)
+++|.+++++..+|+||.+|+.||||.++.+|+..+.|.+.++|..|+.+||.||.+||.+.+.-...-.
T Consensus 304 s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~ 373 (720)
T KOG1472|consen 304 STPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFA 373 (720)
T ss_pred ccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999987665544333
No 223
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.14 E-value=9.1e-05 Score=94.00 Aligned_cols=126 Identities=10% Similarity=0.010 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCcEEEecCChhHHHHHH--HHhhccCccEEE
Q psy1544 584 MGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQ--AQMKASKFNVLL 660 (1331)
Q Consensus 584 mGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~--~~~~~~~~~VvI 660 (1331)
.|+|||-+.+.++...+..++ -+||++|. ++..|+...|...++...+.++++.-....... .....+...|||
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 499999999999988887643 39999999 566999999999997677888887644443333 334567788999
Q ss_pred eeHHHHHhccCcccccCccEEEEeCCccc--CCcch-----HHHHHHHHhccCCceeeeccCCC
Q psy1544 661 TTYEYVIKDKGPLAKLHWKYMIIDEGHRM--KNHHC-----KLTHILNTFYVAPHRLLLTGTPL 717 (1331)
Q Consensus 661 tTye~l~~~~~~l~~~~~~~vIiDEaHri--kn~~s-----k~~~~l~~~~~~~~rllLTgTPl 717 (1331)
.|...+.--. -+..+|||||=|.- |...+ .-...++.....-..|+-|+||-
T Consensus 246 GtRSAvFaP~-----~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 246 GTRSAVFAPV-----EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EcceeEEecc-----CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 9987663222 25689999999864 33221 11122222223445677899993
No 224
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.08 E-value=1e-05 Score=90.90 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=76.5
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCC--------CEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTA--------DTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~a--------d~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
...+.|++ +...|+|+ ++|||.||.||+- .+-|.++++|+....+|-.||+||-||.....+..+++.-
T Consensus 52 ~e~~~F~~--g~k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhC--CCceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 45678995 44566555 5999999999952 2457899999999999999999999999987666778888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1011 SVEERILAAARYKLNMDEKVIQA 1033 (1331)
Q Consensus 1011 TiEE~I~~~~~~K~~l~~~vi~~ 1033 (1331)
..|.+......+|+.-..+...+
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccC
Confidence 89999999999999988877755
No 225
>KOG0953|consensus
Probab=98.03 E-value=2.3e-05 Score=92.31 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhh--hcCCCeeEEEeccHHHHHHH
Q psy1544 837 ALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKL--KSTGHRVLLFCQMTQLMNIL 914 (1331)
Q Consensus 837 ~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l--~~~g~KVLIFsq~~~~ld~L 914 (1331)
.++.....=-++|..|....-+...+.. .+.. . .-..|.--+.+..+..++..+ ...|+-|+-||.. .+-.+
T Consensus 299 ALLGl~AdEiHLCGepsvldlV~~i~k~-TGd~-v--ev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk--~I~~~ 372 (700)
T KOG0953|consen 299 ALLGLAADEIHLCGEPSVLDLVRKILKM-TGDD-V--EVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKK--DIFTV 372 (700)
T ss_pred HHHhhhhhhhhccCCchHHHHHHHHHhh-cCCe-e--EEEeecccCcceehhhhhhhhccCCCCCeEEEeehh--hHHHH
Confidence 3444444445678888766554433211 1110 0 001122223344444444433 2467888888754 34445
Q ss_pred HHHHHhcCCe-EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCC---------CCccc
Q psy1544 915 EDYFSYRGFK-YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD---------WNPHQ 984 (1331)
Q Consensus 915 ~~~L~~~g~~-~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~---------wNp~~ 984 (1331)
...+..+|.. +++|.|+.+++-|.+--..||++++++.| |++|+|.|.|||| +.++|||++.- -...+
T Consensus 373 k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sq 450 (700)
T KOG0953|consen 373 KKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQ 450 (700)
T ss_pred HHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEEEEeecccCCcccceeccHHH
Confidence 5566666665 99999999999999999999998888887 8899999999999 57889998865 24456
Q ss_pred cccccccccccCCCCc
Q psy1544 985 DLQAQDRAHRIGQKNE 1000 (1331)
Q Consensus 985 ~~QaiGRa~RiGQ~k~ 1000 (1331)
..|.-|||+|.|.+-+
T Consensus 451 ikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 451 IKQIAGRAGRFGSKYP 466 (700)
T ss_pred HHHHhhcccccccCCc
Confidence 7799999999998765
No 226
>KOG4150|consensus
Probab=97.94 E-value=3.4e-05 Score=90.32 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=89.9
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh----cC----CeEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY----RG----FKYMRLDGTTKAEDRGDLLKKFNAPDSEYF 952 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~----~g----~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~ 952 (1331)
+.|+.-...++..+...|-|+|-||..+..++.+....+. .| -.+..+.|+-..++|.++-.+.- .++.
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F--~G~L- 584 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF--GGKL- 584 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh--CCee-
Confidence 5566667778888888899999999999887765443332 22 12456779999999998876643 1333
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCC
Q psy1544 953 IFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ 997 (1331)
Q Consensus 953 v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ 997 (1331)
.-+|+|.|+.+|||+...|.|+.+..|.+.+.+.|-.|||+|-..
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 348999999999999999999999999999999999999999653
No 227
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.93 E-value=9.4e-05 Score=82.21 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=47.1
Q ss_pred CccHHHHHHHHHHHHHhcCCCc-eEEecCCCCCHHHHHHHHHHHHHH-----hcCCCCcEEEEeCCc-cHHHHHHHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLN-GILADEMGLGKTIQTIALITYLME-----KKKVNGPFLIIVPLS-TLSNWSLEFER 627 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~-gILADemGlGKTi~ai~li~~l~~-----~~~~~~p~LIV~P~s-ll~qW~~E~~k 627 (1331)
+|.+.|.++|..++. ..+ .++..+.|+|||.+..+++..+.. .....+++||++|++ .+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999986664 444 788999999999888888877742 245566799999984 45777666666
No 228
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00086 Score=84.88 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=92.4
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
....|+..+..-+......|..|||-+.+......+...|...|++..+++..-. .|+.-|-.+. +..+ .+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~g--aVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPG--AVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCC--cccccc
Confidence 4467999999999999999999999999999999999999999999988887665 5666565554 2222 256799
Q ss_pred cccccccCCCC-CC----------EEEEeCCCCCccccccccccccccCCCC
Q psy1544 959 RAGGLGLNLQT-AD----------TVIIFDSDWNPHQDLQAQDRAHRIGQKN 999 (1331)
Q Consensus 959 ~aggeGLNL~~-ad----------~VI~~D~~wNp~~~~QaiGRa~RiGQ~k 999 (1331)
..+|+|-|+.- .+ +||--.-.=+-..+-|--||++|.|..-
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG 536 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPG 536 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcc
Confidence 99999999874 32 4565666666777779999999999543
No 229
>KOG1828|consensus
Probab=97.69 E-value=2.6e-05 Score=88.23 Aligned_cols=73 Identities=15% Similarity=0.004 Sum_probs=68.4
Q ss_pred ccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q psy1544 1241 SEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLES 1314 (1331)
Q Consensus 1241 ~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~ 1314 (1331)
...|.-+|....+|.|..+|++|+++.|++.|+.++.|.| -+|..|+.|||-||++||++...+|+.|..+-.
T Consensus 226 ~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 226 VAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 4578888888999999999999999999999999999999 899999999999999999999999999988755
No 230
>KOG1474|consensus
Probab=97.64 E-value=1.7e-05 Score=100.40 Aligned_cols=92 Identities=35% Similarity=0.517 Sum_probs=83.3
Q ss_pred CccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q psy1544 1238 RVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESV 1315 (1331)
Q Consensus 1238 r~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~ 1315 (1331)
+.++|+|..+++.- ..|+||.+|++|||+++|++++.++.|.+..+..+|+..+|.||..||..+-.|+.++..++.+
T Consensus 7 ~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~ 86 (640)
T KOG1474|consen 7 HKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKL 86 (640)
T ss_pred ccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhh
Confidence 45799999999965 4499999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q psy1544 1316 FTKARQRVESGEDP 1329 (1331)
Q Consensus 1316 f~~~~~~~~~~~~~ 1329 (1331)
|......+..++.+
T Consensus 87 ~~~~~~~~~~~~~d 100 (640)
T KOG1474|consen 87 FPKKLRSMPSDEED 100 (640)
T ss_pred cccccccccccccC
Confidence 98887776655543
No 231
>KOG1828|consensus
Probab=97.62 E-value=8.2e-06 Score=92.12 Aligned_cols=81 Identities=26% Similarity=0.295 Sum_probs=73.6
Q ss_pred ccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q psy1544 1241 SEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKAR 1320 (1331)
Q Consensus 1241 ~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~~~~ 1320 (1331)
-..|-.|+.....|+|.++|+.|||+.||+.|++.+.|.++.+|..|.+++++||..||...+.++..|.+|..+-....
T Consensus 37 ~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 37 KQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMT 116 (418)
T ss_pred hhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhcchh
Confidence 34577788888999999999999999999999999999999999999999999999999999999999999988765544
Q ss_pred H
Q psy1544 1321 Q 1321 (1331)
Q Consensus 1321 ~ 1321 (1331)
.
T Consensus 117 q 117 (418)
T KOG1828|consen 117 Q 117 (418)
T ss_pred h
Confidence 3
No 232
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.31 E-value=0.0018 Score=73.12 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=72.2
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH----HHHHHHHHH
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL----SNWSLEFER 627 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k 627 (1331)
..+..+++-|+-|+-.|. .|-|.-..||=|||+++..++ ++.... +.+|=||+.+..| .+|...|-+
T Consensus 73 ~~g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~l~a-~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAALPA-ALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HTS----HHHHHHHHHHH------TTSEEEESTTSHHHHHHHHHH-HHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HcCCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHHHHH-HHHHHh--cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 345677888888875552 344888999999999875443 333332 3458888888777 568888888
Q ss_pred HcCCCcEEEecCC-h-hHHHHHHHHhhccCccEEEeeHHHHHhc-----cC----cccccCccEEEEeCCccc
Q psy1544 628 WAPSVNVVAYKGS-P-HLRKTLQAQMKASKFNVLLTTYEYVIKD-----KG----PLAKLHWKYMIIDEGHRM 689 (1331)
Q Consensus 628 ~~p~~~v~~~~g~-~-~~r~~~~~~~~~~~~~VvItTye~l~~~-----~~----~l~~~~~~~vIiDEaHri 689 (1331)
++ ++.+.+..+. . ..|+. .-..+|+.+|-..+.-| .. ....-.++++||||++.+
T Consensus 144 ~L-Glsv~~~~~~~~~~~r~~------~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 144 FL-GLSVGIITSDMSSEERRE------AYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HT-T--EEEEETTTEHHHHHH------HHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred Hh-hhccccCccccCHHHHHH------HHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 87 4555444433 3 22221 11357888886654322 11 111237899999999876
No 233
>PRK10536 hypothetical protein; Provisional
Probab=97.26 E-value=0.0043 Score=69.22 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=82.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc---
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN--- 633 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~--- 633 (1331)
+...|...+.++.. +..+++..+.|+|||+.++++....+..+. .. .+||+-..+-. .+.-.|.|+-.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~-kIiI~RP~v~~---ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKD-VD-RIIVTRPVLQA---DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-ee-EEEEeCCCCCc---hhhhCcCCCCHHHH
Confidence 45668888877754 457788899999999999999886554433 23 34444333211 12222222210
Q ss_pred E-----------EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHH
Q psy1544 634 V-----------VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNT 702 (1331)
Q Consensus 634 v-----------~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~ 702 (1331)
+ ..+.|... +...+......|.|....+++... +.-++||||||+++.-. .+...+..
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~----~~~~~~~~~~~Iei~~l~ymRGrt-----l~~~~vIvDEaqn~~~~--~~k~~ltR 199 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF----MQYCLRPEIGKVEIAPFAYMRGRT-----FENAVVILDEAQNVTAA--QMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH----HHHHHHhccCcEEEecHHHhcCCc-----ccCCEEEEechhcCCHH--HHHHHHhh
Confidence 0 00011111 111111123456777777665432 24489999999988653 23334444
Q ss_pred hccCCceeeeccCCCCCChH
Q psy1544 703 FYVAPHRLLLTGTPLQNKLP 722 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN~l~ 722 (1331)
+ ....+++++|-|-|.++.
T Consensus 200 ~-g~~sk~v~~GD~~QiD~p 218 (262)
T PRK10536 200 L-GENVTVIVNGDITQCDLP 218 (262)
T ss_pred c-CCCCEEEEeCChhhccCC
Confidence 3 677889999999876643
No 234
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.26 E-value=0.0011 Score=82.29 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=87.0
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH--H--H----HHHHH-HHHcCC--CcEEEecCC
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL--S--N----WSLEF-ERWAPS--VNVVAYKGS 640 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll--~--q----W~~E~-~k~~p~--~~v~~~~g~ 640 (1331)
.....++=+-+|||+|||.+-+-++..|...-+..+ ++||||+-.+ . . -.+.| ..+..+ ...++|...
T Consensus 71 ~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~K-FIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 71 IDDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFK-FIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred CCCcceeeEEEecCCCceeeHHHHHHHHHHHhCcee-EEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 344556667899999999999999988877766555 9999999544 2 1 22333 333333 334444311
Q ss_pred hhHHHHHHHHhhccCccEEEeeHHHHHhc---cCccccc--------------------CccEEEEeCCcccCCcchHHH
Q psy1544 641 PHLRKTLQAQMKASKFNVLLTTYEYVIKD---KGPLAKL--------------------HWKYMIIDEGHRMKNHHCKLT 697 (1331)
Q Consensus 641 ~~~r~~~~~~~~~~~~~VvItTye~l~~~---~~~l~~~--------------------~~~~vIiDEaHrikn~~sk~~ 697 (1331)
. ............|++.+...+.++ ...+..- .--+|||||-|+|.+. .+.+
T Consensus 150 -~---~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 150 -I---EKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred -H---HHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHH
Confidence 1 111222345678888888877665 2211100 1247999999999886 5667
Q ss_pred HHHHHhccCCceeeeccC
Q psy1544 698 HILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 698 ~~l~~~~~~~~rllLTgT 715 (1331)
.++..+ .....|=.+||
T Consensus 225 ~~i~~l-~pl~ilRfgAT 241 (985)
T COG3587 225 GAIKQL-NPLLILRFGAT 241 (985)
T ss_pred HHHHhh-CceEEEEeccc
Confidence 777766 56666778888
No 235
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.20 E-value=0.0024 Score=69.26 Aligned_cols=147 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH-----HHHcCC
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF-----ERWAPS 631 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~-----~k~~p~ 631 (1331)
+-..|...+..+. +....++....|+|||+.|++....++..+.. ..++|+-|..-...+.--+ +|..|.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEY-DKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC-cEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 4568999998777 35567888899999999999999988877443 4466666665332221100 111111
Q ss_pred CcEE-----EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 632 VNVV-----AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 632 ~~v~-----~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
+..+ .+.+....... + ....|-+.+..+++.. .+...+||||||+++.... .+.+..-...
T Consensus 80 ~~p~~d~l~~~~~~~~~~~~----~--~~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t~~~---~k~ilTR~g~ 145 (205)
T PF02562_consen 80 LRPIYDALEELFGKEKLEEL----I--QNGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLTPEE---LKMILTRIGE 145 (205)
T ss_dssp THHHHHHHTTTS-TTCHHHH----H--HTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--HHH---HHHHHTTB-T
T ss_pred HHHHHHHHHHHhChHhHHHH----h--hcCeEEEEehhhhcCc-----cccceEEEEecccCCCHHH---HHHHHcccCC
Confidence 1000 00011111111 1 2334666666555432 2346899999999875443 2333232356
Q ss_pred CceeeeccCCCCCChH
Q psy1544 707 PHRLLLTGTPLQNKLP 722 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~ 722 (1331)
..+++++|-|.|.+..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 6789999999877654
No 236
>KOG0925|consensus
Probab=97.19 E-value=0.0027 Score=74.16 Aligned_cols=59 Identities=32% Similarity=0.412 Sum_probs=45.1
Q ss_pred EEEeeccccccccCCCCCCEEEEeCCC------CCc-----------cccccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 953 IFVLSTRAGGLGLNLQTADTVIIFDSD------WNP-----------HQDLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 953 v~LlST~aggeGLNL~~ad~VI~~D~~------wNp-----------~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
-+++||..+...|.+.++-+|| |+. +|| ..-.||.-|++|.|.+++-..|+|+++...+
T Consensus 315 kvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 4589999999988888776665 443 344 3445788888888999999999999976554
No 237
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.06 E-value=0.0018 Score=77.12 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=52.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHH-HHHHHcCCCcEEEecCChhHHHHHHHHhhccCcc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSL-EFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFN 657 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~-E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 657 (1331)
|+--..|+|||+.++.++..+..... ...++++|....+.+... .|..-. ......
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~~-~~~~~~l~~n~~l~~~l~~~l~~~~----------------------~~~~~~ 61 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSEE-GKKVLYLCGNHPLRNKLREQLAKKY----------------------NPKLKK 61 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhcccc-CCceEEEEecchHHHHHHHHHhhhc----------------------ccchhh
Confidence 55667899999999999998822222 334788888876655443 443321 000111
Q ss_pred EEEeeHHHHHhccC--cccccCccEEEEeCCcccCC
Q psy1544 658 VLLTTYEYVIKDKG--PLAKLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 658 VvItTye~l~~~~~--~l~~~~~~~vIiDEaHrikn 691 (1331)
..+..+..+++... ......+|+|||||||++..
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 22223333333222 22334789999999999976
No 238
>KOG1802|consensus
Probab=96.98 E-value=0.0042 Score=75.14 Aligned_cols=132 Identities=20% Similarity=0.340 Sum_probs=90.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 633 (1331)
.+|.--|..||...+. +.-.||-.+.|+|||+++.+++.+|... ..+|+||++|..+- .|-...|.+-. ++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~tg--LK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKTG--LK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhcC--ce
Confidence 3788999999998884 5567999999999999999999988877 46889999999765 88888887754 44
Q ss_pred EEEecCC-----------------------hhHHHHHH-----------------------HHhhccCccEEEeeHHHHH
Q psy1544 634 VVAYKGS-----------------------PHLRKTLQ-----------------------AQMKASKFNVLLTTYEYVI 667 (1331)
Q Consensus 634 v~~~~g~-----------------------~~~r~~~~-----------------------~~~~~~~~~VvItTye~l~ 667 (1331)
|+-+... ++..+... ........+|+.||.-..
T Consensus 481 VvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A- 559 (935)
T KOG1802|consen 481 VVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA- 559 (935)
T ss_pred EeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc-
Confidence 3321110 11111000 001124557777775322
Q ss_pred hccCcccccCccEEEEeCCcccCCcchHH
Q psy1544 668 KDKGPLAKLHWKYMIIDEGHRMKNHHCKL 696 (1331)
Q Consensus 668 ~~~~~l~~~~~~~vIiDEaHrikn~~sk~ 696 (1331)
....|.+++|..|+||||-...-+.+-+
T Consensus 560 -gd~rl~~~kfr~VLiDEaTQatEpe~Li 587 (935)
T KOG1802|consen 560 -GDRRLSKFKFRTVLIDEATQATEPECLI 587 (935)
T ss_pred -cchhhccccccEEEEecccccCCcchhh
Confidence 2344677899999999998876666543
No 239
>KOG1131|consensus
Probab=96.89 E-value=0.0098 Score=70.21 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=51.4
Q ss_pred ccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy1544 549 ASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615 (1331)
Q Consensus 549 p~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~ 615 (1331)
+.++-....+|-|.+-..-+...+..++.|+|-++.|+|||+.-++++..+..+.+....-||-|..
T Consensus 9 ~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 9 LVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 3334456788989887766667788999999999999999999999888776665544445777754
No 240
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.87 E-value=0.0098 Score=64.74 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEE
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVV 635 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~ 635 (1331)
+|.+-|.+++..++. +...-.+|.-..|+|||.....++..+... ...+++++|+.....- +..-.
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa~~---L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAAKE---LREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHHHH---HHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHHHH---HHHhh------
Confidence 477889999998875 122335777889999998765555444433 2558999998654221 21111
Q ss_pred EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcc------cccCccEEEEeCCcccCCcchHHHHHHHHhccCCce
Q psy1544 636 AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPL------AKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 636 ~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l------~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~r 709 (1331)
.+-..|...+....... .....++||||||-.+.... +...+.......-+
T Consensus 67 ---------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~--~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 67 ---------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQ--LARLLRLAKKSGAK 123 (196)
T ss_dssp ---------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHH--HHHHHHHS-T-T-E
T ss_pred ---------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHH--HHHHHHHHHhcCCE
Confidence 01122222222221111 02356899999999886544 23333333334668
Q ss_pred eeeccCCCC
Q psy1544 710 LLLTGTPLQ 718 (1331)
Q Consensus 710 llLTgTPlq 718 (1331)
++|.|-|.|
T Consensus 124 lilvGD~~Q 132 (196)
T PF13604_consen 124 LILVGDPNQ 132 (196)
T ss_dssp EEEEE-TTS
T ss_pred EEEECCcch
Confidence 999999865
No 241
>KOG1803|consensus
Probab=96.67 E-value=0.006 Score=73.86 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=53.1
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHH
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEF 625 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~ 625 (1331)
.++..|-+-|..++.+++. +..-.++-.+.|+|||.+...+|..++..+ ..+||.+|+.+- .|..+.+
T Consensus 181 ~~~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cCCccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHh
Confidence 4556789999999998874 323457788999999999999999988765 459999999654 7776643
No 242
>PF13892 DBINO: DNA-binding domain
Probab=96.66 E-value=0.0056 Score=61.12 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 329 NNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVK 406 (1331)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~d~~~y~~~~~~~k~~r~~~ll~~t~~~~~~l~~~v~ 406 (1331)
....+++++.+-|+.|+...+++++....+.+||.+.+.+..+|..- --+ ..+||.+||+||+-|-+-|+...+
T Consensus 61 d~~~Rakrl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~e--~~r--q~~rl~fLl~QTElfsHF~~~k~~ 134 (139)
T PF13892_consen 61 DTQLRAKRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKRE--AKR--QQRRLNFLLTQTELFSHFMQNKAK 134 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH--HHH--HHHHHHHHHHHHHHHHHHHccccc
Confidence 44577889999999999999999999999999999888877666432 112 247999999999999998886654
No 243
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.66 E-value=0.00081 Score=90.11 Aligned_cols=182 Identities=25% Similarity=0.335 Sum_probs=99.2
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCC--HHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLG--KTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPS 631 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlG--KTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~ 631 (1331)
...+.++|...+.-....... ...+++..|+| ||+.+..++.......... .+++++|..+..+|..+...++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~ 158 (866)
T COG0553 82 RFILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLLRGEIK-RVLILVPKTLRAQWVVELLEKFNI 158 (866)
T ss_pred ccccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhhhhhhc-cceeccchHHHHHHHHHhhhhccc
Confidence 345777777766544433322 26888999999 8999887777665554443 489999988889999988775321
Q ss_pred C-cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc----cCcccccCc---cEEEEeCCcccCCcc---------h
Q psy1544 632 V-NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD----KGPLAKLHW---KYMIIDEGHRMKNHH---------C 694 (1331)
Q Consensus 632 ~-~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~----~~~l~~~~~---~~vIiDEaHrikn~~---------s 694 (1331)
- .+....+...................+++..+..... ...+....| +++++||+|.+.+.. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (866)
T COG0553 159 RLAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLET 238 (866)
T ss_pred cchhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhh
Confidence 1 1111111111100000000000000023333333322 122333346 899999999997642 2
Q ss_pred HHHHHHHHhc-cCC------ceeeeccCCCCCChHHHHHHHhhhcCCCCCC
Q psy1544 695 KLTHILNTFY-VAP------HRLLLTGTPLQNKLPELWALLNFLLPSIFKS 738 (1331)
Q Consensus 695 k~~~~l~~~~-~~~------~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~ 738 (1331)
..+..+.... +.. ...++++||......++++..+++.+..+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 239 LEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 2222232221 111 2347899999888888777666666655544
No 244
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.51 E-value=0.026 Score=72.23 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=53.9
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k 627 (1331)
....|-+.|..+|.+++. +....|+-.+.|+|||.+++.++..+...+. ++||++|+..- .+....+..
T Consensus 154 ~~~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 154 FDPNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred cCCCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 345789999999998764 3356688899999999999999888776532 69999999654 677777765
No 245
>KOG1132|consensus
Probab=96.48 E-value=0.016 Score=72.81 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=56.2
Q ss_pred CeeEEEeccHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHhcC----CC-CCceEEEeeccccccccC
Q psy1544 899 HRVLLFCQMTQLMNILEDYFSYR-------GFKYMRLDGTTKAEDRGDLLKKFNA----PD-SEYFIFVLSTRAGGLGLN 966 (1331)
Q Consensus 899 ~KVLIFsq~~~~ld~L~~~L~~~-------g~~~~~idG~~~~~eR~~~i~~Fn~----~~-~~~~v~LlST~aggeGLN 966 (1331)
+.+|||..+-.+++.+..+...+ +++-+.+-- -+..+=.+++..|-+ ++ ++...+.|+--..++|||
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEP-r~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEP-RSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceecc-CCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 34999999888888886666543 222222221 122333445555532 22 223345667777899999
Q ss_pred CCC--CCEEEEeCCCCCccccccc
Q psy1544 967 LQT--ADTVIIFDSDWNPHQDLQA 988 (1331)
Q Consensus 967 L~~--ad~VI~~D~~wNp~~~~Qa 988 (1331)
+.+ +..||+...++=+..+.|.
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V 664 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRV 664 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHH
Confidence 985 8889999999887777653
No 246
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.46 E-value=0.0032 Score=66.67 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=55.1
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcC----CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc--ccccccCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRG----FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR--AGGLGLNLQT 969 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g----~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~--aggeGLNL~~ 969 (1331)
..+.++|||+.+-..++.+...+...+ +.+.. . +...+..+++.|....+. +|+++. ..++|||+.+
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q---~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-Q---GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-S---TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--EC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-c---CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCCC
Confidence 445689999999999999999998663 33222 2 245788999999964333 577777 8899999996
Q ss_pred --CCEEEEeCCCC
Q psy1544 970 --ADTVIIFDSDW 980 (1331)
Q Consensus 970 --ad~VI~~D~~w 980 (1331)
|..||+.-.|+
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 88999999887
No 247
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.33 E-value=0.0079 Score=65.94 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=58.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
+..+|+-|.+.+..|++. ..+.|.++-.-||-|||-+.+-+++.++..+. .=+-||||..++.+-..-+..-+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 457999999999999863 35677899999999999998888887776543 33788999999988877776544
No 248
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.32 E-value=0.11 Score=62.73 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=95.4
Q ss_pred ccchhHHHHH-hhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEe
Q psy1544 880 VSGKFELLDR-ILPKLK--STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVL 956 (1331)
Q Consensus 880 ~s~K~~~L~~-lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~Ll 956 (1331)
...++..... +|+.+. ....++|||..+=-..-.|..+|...++.|+.++--++..+-..+-..|.. +...++|+
T Consensus 279 ~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~ 356 (442)
T PF06862_consen 279 PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH--GRKPILLY 356 (442)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc--CCceEEEE
Confidence 3557777655 777776 234689999988777778999999999999999999999999999999984 45667777
Q ss_pred eccccc-cccCCCCCCEEEEeCCCCCccccccccccccccCC----CCceEEEEEeeC
Q psy1544 957 STRAGG-LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ----KNEVRVLRLMTV 1009 (1331)
Q Consensus 957 ST~agg-eGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ----~k~V~V~rli~~ 1009 (1331)
+-++-= .=..+.++.+||+|.+|-+|.-|...+.-...-.+ ...+.|.-|.+.
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 655422 23457789999999999999988877755444332 334555555554
No 249
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.09 E-value=0.042 Score=55.48 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHHHhcC--CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH
Q psy1544 564 GLEWMVSLFNN--NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN 620 (1331)
Q Consensus 564 gv~~l~~~~~~--~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q 620 (1331)
.+.++...... +...++..+.|+|||..+-.++..+.. ...+++++........
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEG 61 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhh
Confidence 34444444333 556788999999999877777666542 2344555544443333
No 250
>KOG4849|consensus
Probab=95.95 E-value=1.6 Score=49.41 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy1544 200 LIILQERENRVALNIERRI 218 (1331)
Q Consensus 200 ~~~~~~re~~i~~~i~~r~ 218 (1331)
+.++.....+-.+-|+.-+
T Consensus 363 EdiM~RNraiSSSAIsrAv 381 (498)
T KOG4849|consen 363 EDIMTRNRAISSSAISRAV 381 (498)
T ss_pred HHHHhhcchhhHHHHHHHh
Confidence 4444444444444455544
No 251
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.93 E-value=0.006 Score=61.37 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=58.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCcc-HHHHHHHHHHHcC-CCcEEEecCChhHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKK---VNGPFLIIVPLST-LSNWSLEFERWAP-SVNVVAYKGSPHLRKTLQA 649 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~---~~~p~LIV~P~sl-l~qW~~E~~k~~p-~~~v~~~~g~~~~r~~~~~ 649 (1331)
+..+++..+.|+|||..+-.++..+..... ...-+.|-||... ...+..++...+. .... ... .... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~--~~~l-~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQT--SDEL-RS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS---HHHH-HH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCC--HHHH-HH
Confidence 445688899999999998888877654311 1111344444433 3455555543321 1111 000 0000 00
Q ss_pred HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc-cCCceeeeccCC
Q psy1544 650 QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-VAPHRLLLTGTP 716 (1331)
Q Consensus 650 ~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-~~~~rllLTgTP 716 (1331)
.+. ..+....-.+|||||+|++. +......+..+. ...-.++|+|||
T Consensus 78 ---------------~~~---~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 ---------------LLI---DALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ---------------HHH---HHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ---------------HHH---HHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 011 11111122689999999984 244455555553 345569999998
No 252
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=95.91 E-value=0.0057 Score=49.19 Aligned_cols=41 Identities=34% Similarity=0.730 Sum_probs=37.6
Q ss_pred ccccchhhcccccccCCCCchhhHhhhhhhhcCCCCccccC
Q psy1544 450 DMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVAD 490 (1331)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1331)
|..+.|.+..+|+.+.|+.||...+|..||+.||+|++...
T Consensus 3 e~rV~vi~~~tG~~l~g~~aP~~~~l~~WL~~~p~yev~p~ 43 (45)
T smart00592 3 EERVPVINRETGKKLTGDDAPKAKDLERWLEENPEYEVAPR 43 (45)
T ss_pred cceeEeeccCCccEeccccCCcHHHHHHHHhcCCCcccCCC
Confidence 45788899999999999999999999999999999998764
No 253
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.12 Score=61.79 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=72.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCc--cHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhh
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKK-VNGPFLIIVPLS--TLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~-~~~p~LIV~P~s--ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
...++.-.+|+|||.++.-++.++..... ....+.+|+=.. .-..|. +..|+-.+.+-++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~~-------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVKA-------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceEe--------------
Confidence 34578899999999998888777654421 233455555432 222222 44554322221111
Q ss_pred ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcch---HHHHHHHHhc-cCCceeeeccCCCCCChHHHHHHH
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFY-VAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~-~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
+.++..+......+ .++++||||++.+...... .+...+.... .....|.|+||--++.+.+.+..+
T Consensus 239 -------~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 239 -------IESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred -------eCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 11222232211112 2579999999999854332 2223333221 123558899998888888777766
Q ss_pred hhh
Q psy1544 729 NFL 731 (1331)
Q Consensus 729 ~fL 731 (1331)
..+
T Consensus 310 ~~~ 312 (388)
T PRK12723 310 SPF 312 (388)
T ss_pred cCC
Confidence 544
No 254
>KOG0951|consensus
Probab=95.77 E-value=0.026 Score=73.05 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=79.6
Q ss_pred HhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-----HHHHHHHHHHcCCCcEEEecCChhHHH
Q psy1544 571 LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-----SNWSLEFERWAPSVNVVAYKGSPHLRK 645 (1331)
Q Consensus 571 ~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-----~qW~~E~~k~~p~~~v~~~~g~~~~r~ 645 (1331)
.|+.+.+++++.+.|+|||++|--++.. ....+.+.-|+|...+ ..|...|.+. .+..++-..|......
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 4567778999999999999887443332 3445678999999765 5688888776 5677777777654433
Q ss_pred HHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcch
Q psy1544 646 TLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC 694 (1331)
Q Consensus 646 ~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s 694 (1331)
. .....+|+|+|++.+-.-. +--..++.|+||.|.+.+...
T Consensus 1230 k-----l~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1230 K-----LLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred H-----HhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccCC
Confidence 3 2345689999999875542 222568999999999986543
No 255
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=95.75 E-value=0.0021 Score=51.95 Aligned_cols=41 Identities=34% Similarity=0.776 Sum_probs=32.8
Q ss_pred cccccchhhcccccccCCCCchhhHhhhhhhhcCCCCcccc
Q psy1544 449 TDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVA 489 (1331)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1331)
.|..+.|.+..+|+.+.|++||...+|..||+.||+|++..
T Consensus 4 ~eerV~Vi~~~tGk~l~G~~AP~~~~L~~WL~~~P~y~V~P 44 (46)
T PF07533_consen 4 GEERVPVINRKTGKRLTGDEAPKLKELEEWLEEHPGYEVAP 44 (46)
T ss_dssp TTSB--EEETTTTEEE-CCCS-BCCCHHHHHHH-TTEEESH
T ss_pred CcceeEeEECCCCCCcccccCcCHHHHHHHHHHCcCceeCC
Confidence 46688999999999999999999999999999999998754
No 256
>KOG1923|consensus
Probab=95.66 E-value=0.028 Score=69.47 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=6.3
Q ss_pred hhhcCCCCCchhhH
Q psy1544 64 MKEQGLEEDPRYQK 77 (1331)
Q Consensus 64 ~~~~~~~~d~~~~~ 77 (1331)
|..+-+.++-.|=+
T Consensus 210 ~~~~~~~dels~m~ 223 (830)
T KOG1923|consen 210 YQRKALLDELSCMQ 223 (830)
T ss_pred HHHHHhcchhHHHH
Confidence 34444444444433
No 257
>PRK04296 thymidine kinase; Provisional
Probab=95.57 E-value=0.025 Score=61.24 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
.++.-+||+|||..++.++..+... ...++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 4678899999999999888877554 244777755
No 258
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.44 E-value=0.13 Score=67.02 Aligned_cols=135 Identities=21% Similarity=0.191 Sum_probs=78.1
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
+..|.+-|.+++..+.. +.-.+|....|+|||.++-+++..+...+ ...++++++|+..-.....+.. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~e~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELG-GLLPVGLAAPTGRAAKRLGEVT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCceEEEEeCchHHHHHHHHhc----CCc
Confidence 45789999999997753 55678999999999988777766554432 1245888899976655444321 000
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
. ..+....... .+-. .. .... .....++||||||+.+.... +...+..+ ....+|+|-
T Consensus 392 a----------~Tih~lL~~~-~~~~---~~---~~~~--~~~~~~llIvDEaSMvd~~~--~~~Ll~~~-~~~~rlilv 449 (720)
T TIGR01448 392 A----------STIHRLLGYG-PDTF---RH---NHLE--DPIDCDLLIVDESSMMDTWL--ALSLLAAL-PDHARLLLV 449 (720)
T ss_pred c----------ccHHHHhhcc-CCcc---ch---hhhh--ccccCCEEEEeccccCCHHH--HHHHHHhC-CCCCEEEEE
Confidence 0 0011111000 0000 00 0000 11356899999999985432 23334333 556789998
Q ss_pred cCCCCC
Q psy1544 714 GTPLQN 719 (1331)
Q Consensus 714 gTPlqN 719 (1331)
|=|-|-
T Consensus 450 GD~~QL 455 (720)
T TIGR01448 450 GDTDQL 455 (720)
T ss_pred Cccccc
Confidence 887654
No 259
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.44 E-value=0.054 Score=62.33 Aligned_cols=144 Identities=20% Similarity=0.278 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhcCCC-ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHH---------------HHH
Q psy1544 559 EYQIKGLEWMVSLFNNNL-NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLS---------------NWS 622 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~-~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~---------------qW~ 622 (1331)
-+|.-++.-++. ... -+.|...-|+|||+-|++...+-....+....++|-=|.--+. -|.
T Consensus 231 ~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 231 AEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred HHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 478888876653 111 2457777899999998776654443334444344444543332 243
Q ss_pred HHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHH
Q psy1544 623 LEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNT 702 (1331)
Q Consensus 623 ~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~ 702 (1331)
.-+-. ++.++.-..... ...+...+..+...|--.||=.= ..+.-.+||||||+++--+. .+.+..
T Consensus 308 q~i~D---nLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRG-------RSl~~~FiIIDEaQNLTphe---ikTilt 373 (436)
T COG1875 308 QAIFD---NLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRG-------RSLPDSFIIIDEAQNLTPHE---LKTILT 373 (436)
T ss_pred HHHHh---HHHHHhcccccc-hHHHHHHHhccceeeeeeeeecc-------cccccceEEEehhhccCHHH---HHHHHH
Confidence 33221 111111000000 11222222223333433333211 12234789999999885433 233323
Q ss_pred hccCCceeeeccCCCCC
Q psy1544 703 FYVAPHRLLLTGTPLQN 719 (1331)
Q Consensus 703 ~~~~~~rllLTgTPlqN 719 (1331)
-....-++.|||-|.|-
T Consensus 374 R~G~GsKIVl~gd~aQi 390 (436)
T COG1875 374 RAGEGSKIVLTGDPAQI 390 (436)
T ss_pred hccCCCEEEEcCCHHHc
Confidence 23556789999988654
No 260
>KOG4849|consensus
Probab=95.30 E-value=0.2 Score=56.38 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=3.6
Q ss_pred HHHhhch
Q psy1544 241 LRALKVL 247 (1331)
Q Consensus 241 ~~~l~l~ 247 (1331)
|.+++|+
T Consensus 397 lTAI~lI 403 (498)
T KOG4849|consen 397 LTAIQLI 403 (498)
T ss_pred HHHHHHH
Confidence 4555554
No 261
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.25 E-value=0.15 Score=64.55 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCccH-HHHHHHHHHHcCCCcEE
Q psy1544 559 EYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--NGPFLIIVPLSTL-SNWSLEFERWAPSVNVV 635 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~ 635 (1331)
+.|+.++..++. +.-.+|.-..|+|||.++..++..+...... ...+++++|+.-- ....+-+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999987775 5667899999999999988888877654332 2358899998544 3333333322111110
Q ss_pred EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccC--------cccccCccEEEEeCCcccCCcchHHHHHHHHhccCC
Q psy1544 636 AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKG--------PLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAP 707 (1331)
Q Consensus 636 ~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~--------~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~ 707 (1331)
...... ...+-..|...+..... .-....+++||||||-.+-... +...+..+ +..
T Consensus 223 ----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l--~~~ll~al-~~~ 286 (586)
T TIGR01447 223 ----AEALIA---------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPL--MAKLLKAL-PPN 286 (586)
T ss_pred ----chhhhh---------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHH--HHHHHHhc-CCC
Confidence 000000 00011112222211100 0112367999999999875432 33344433 556
Q ss_pred ceeeeccCCCCC
Q psy1544 708 HRLLLTGTPLQN 719 (1331)
Q Consensus 708 ~rllLTgTPlqN 719 (1331)
.+|+|.|=+.|-
T Consensus 287 ~rlIlvGD~~QL 298 (586)
T TIGR01447 287 TKLILLGDKNQL 298 (586)
T ss_pred CEEEEECChhhC
Confidence 789999987653
No 262
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=0.016 Score=69.65 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=57.1
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHH----H-HHcCCCcEEEecCChhHHHHHHHH-hhc
Q psy1544 581 ADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEF----E-RWAPSVNVVAYKGSPHLRKTLQAQ-MKA 653 (1331)
Q Consensus 581 ADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~----~-k~~p~~~v~~~~g~~~~r~~~~~~-~~~ 653 (1331)
-+.||+|||+++.++|.++...+- +.+|+.|.. +++..-..-| . ++.- ..++.+.+.....+.+... ...
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCccC
Confidence 467999999999999999887653 346776654 5554333322 1 1110 0111122211111111110 124
Q ss_pred cCccEEEeeHHHHHhccCc-------cccc--CccEEEEeCCccc
Q psy1544 654 SKFNVLLTTYEYVIKDKGP-------LAKL--HWKYMIIDEGHRM 689 (1331)
Q Consensus 654 ~~~~VvItTye~l~~~~~~-------l~~~--~~~~vIiDEaHri 689 (1331)
....|+.||.+.+..+... +... .--+++-|||||+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhl 124 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHL 124 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhh
Confidence 5578999998887654211 1111 1235667999999
No 263
>PRK06526 transposase; Provisional
Probab=95.09 E-value=0.054 Score=61.35 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhH
Q psy1544 564 GLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHL 643 (1331)
Q Consensus 564 gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~ 643 (1331)
+..|+- .+.|.+|..++|+|||..+.++...+...+ ..++++ ....|..++..... .|
T Consensus 91 ~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~----t~~~l~~~l~~~~~-------~~---- 148 (254)
T PRK06526 91 TLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFA----TAAQWVARLAAAHH-------AG---- 148 (254)
T ss_pred cCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHCC---Cchhhh----hHHHHHHHHHHHHh-------cC----
Confidence 344553 467889999999999999999988776543 223332 23456666643210 00
Q ss_pred HHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcch---HHHHHHHHhccCCceeeeccCC
Q psy1544 644 RKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 644 r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~~~~~rllLTgTP 716 (1331)
++....+. + ..+++|||||.|.+..... .++..+...+.....|+.|..|
T Consensus 149 ------------------~~~~~l~~---l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 149 ------------------RLQAELVK---L--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred ------------------cHHHHHHH---h--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 11111111 1 2469999999998854332 3455555444334455555555
No 264
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.06 E-value=0.052 Score=54.23 Aligned_cols=43 Identities=23% Similarity=0.107 Sum_probs=29.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
...+|.-++|+|||..+..++..+.... ..++++.+......|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 4568899999999999888877663332 246777776555443
No 265
>PLN03025 replication factor C subunit; Provisional
Probab=94.90 E-value=0.27 Score=57.91 Aligned_cols=25 Identities=40% Similarity=0.450 Sum_probs=21.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
+.||..+.|+|||..+.+++..+..
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999998887753
No 266
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.061 Score=63.81 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|..++..+...+..+.. .++..+.|+|||..+..++..++..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 66677777777766653 5889999999999999999988774
No 267
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.17 Score=64.46 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. . .||...-|+|||..+..|+..|...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5555555555444432 2 3889999999999999888887654
No 268
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.70 E-value=0.31 Score=54.82 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=32.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
+.+|....|+|||..+.+++.++...+ ..++++ .+..|...+..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 458899999999999999999887643 335555 35666666544
No 269
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.58 E-value=0.18 Score=55.96 Aligned_cols=93 Identities=24% Similarity=0.210 Sum_probs=55.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhc
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKA 653 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 653 (1331)
.+.+.+|.-+.|+|||..+.++..++...+ . .++.+..+.+..|..++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~~~~-------------------------- 86 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG---K-SAIYLPLAELAQADPEVLE-------------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC---C-cEEEEeHHHHHHhHHHHHh--------------------------
Confidence 344568889999999999988887765432 2 2344444444333211100
Q ss_pred cCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccCC
Q psy1544 654 SKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 654 ~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
.+. ..++|||||+|.+.... ..+...+........++++|+|.
T Consensus 87 ------------------~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 87 ------------------GLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred ------------------hcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 001 23689999999986532 33445554443344578888875
No 270
>KOG1805|consensus
Probab=94.52 E-value=0.15 Score=65.18 Aligned_cols=127 Identities=18% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 633 (1331)
..|..-|++|+...+.. ....-|+++ .|+|||-+...+|..|...+ ..+|+.+=+ +.+.|..-.+..+...
T Consensus 668 ~~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i~-- 739 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGIY-- 739 (1100)
T ss_pred hhcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCcc--
Confidence 36888999999877652 233335555 89999998888888887664 348888866 6678888777766432
Q ss_pred EEEecCChhH-HHHHHH---------------HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc
Q psy1544 634 VVAYKGSPHL-RKTLQA---------------QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH 692 (1331)
Q Consensus 634 v~~~~g~~~~-r~~~~~---------------~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~ 692 (1331)
+. --|.... ...++. ........||.||---+- ...|..-.||++|||||-.+--+
T Consensus 740 ~l-RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 740 IL-RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ee-ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccc
Confidence 11 1122111 111111 112344556666643332 33344557999999999876443
No 271
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.47 E-value=0.097 Score=63.84 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|..++..+...+.++.- .|+..+.|+|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 44444444444444442 3899999999999999988877554
No 272
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.30 E-value=0.24 Score=62.92 Aligned_cols=142 Identities=12% Similarity=0.181 Sum_probs=78.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCccHHH-HHHHHHHHcCCCcE
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK-VNGPFLIIVPLSTLSN-WSLEFERWAPSVNV 634 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~-~~~p~LIV~P~sll~q-W~~E~~k~~p~~~v 634 (1331)
.-++|+.++...+. +.-.+|.-..|+|||.++..++..+..... ....+++++|+.--.. -.+.+..-...+.+
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999987764 556788999999999998888887766432 2245788889865533 22222221111100
Q ss_pred EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--------CcccccCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 635 VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--------GPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 635 ~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--------~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
....+. .+..-..|...+.... ..-....+++||||||-.+-... +...+..+ ..
T Consensus 229 -----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~l--m~~ll~al-~~ 291 (615)
T PRK10875 229 -----TDEQKK---------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPM--MARLIDAL-PP 291 (615)
T ss_pred -----chhhhh---------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHH--HHHHHHhc-cc
Confidence 000000 0000111222221110 01122357999999999874332 23344433 56
Q ss_pred CceeeeccCCCCC
Q psy1544 707 PHRLLLTGTPLQN 719 (1331)
Q Consensus 707 ~~rllLTgTPlqN 719 (1331)
..||+|-|=+-|-
T Consensus 292 ~~rlIlvGD~~QL 304 (615)
T PRK10875 292 HARVIFLGDRDQL 304 (615)
T ss_pred CCEEEEecchhhc
Confidence 6789988887553
No 273
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=94.24 E-value=0.019 Score=68.83 Aligned_cols=86 Identities=28% Similarity=0.461 Sum_probs=80.5
Q ss_pred CccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q psy1544 1238 RVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFT 1317 (1331)
Q Consensus 1238 r~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~ 1317 (1331)
+.-.|+|+.+++....|+|++.|..+|+.++.+-++..+.|....+|..|..+++.||..||+.-..++.-+..+..++.
T Consensus 278 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (371)
T COG5076 278 HVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVI 357 (371)
T ss_pred ccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHh
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHh
Q psy1544 1318 KARQRV 1323 (1331)
Q Consensus 1318 ~~~~~~ 1323 (1331)
...+..
T Consensus 358 ~~~~~~ 363 (371)
T COG5076 358 KKTRLI 363 (371)
T ss_pred hhhhhh
Confidence 776644
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.22 E-value=0.1 Score=59.54 Aligned_cols=28 Identities=29% Similarity=0.263 Sum_probs=22.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.+.||.-+.|+|||..|-+++..+...+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3458999999999999888877765443
No 275
>PRK08116 hypothetical protein; Validated
Probab=94.09 E-value=0.4 Score=54.91 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=27.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
+.+.+|..++|+|||..+.+++..+... ..+++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE
Confidence 3456889999999999999999988765 24455554
No 276
>PRK08181 transposase; Validated
Probab=94.06 E-value=0.38 Score=54.94 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
..-|..++.++-.+...+.+.+|..++|+|||..+.++...+...
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 344555654443334467788999999999999999998877654
No 277
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=94.01 E-value=0.045 Score=47.51 Aligned_cols=42 Identities=31% Similarity=0.590 Sum_probs=31.4
Q ss_pred CCCchhhhcccHHHHHHHHHHHHHHHHhhcCCCcccccccccccch
Q psy1544 1107 SELPDWLIKEDEEIEQWAFEAKEEEKALHMGRGSRQRKQVDYTDSL 1152 (1331)
Q Consensus 1107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~R~rk~v~y~d~l 1152 (1331)
++-|++|. .+.+.+|++........+|+|+|.||+|+|.+..
T Consensus 21 ~~~~~yWe----~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~ 62 (66)
T PF06465_consen 21 STDPNYWE----KLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEED 62 (66)
T ss_pred ccchHHHH----HHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 34466653 3667778777666677899999999999998643
No 278
>KOG0989|consensus
Probab=93.96 E-value=0.13 Score=58.03 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcC--CCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 560 YQIKGLEWMVSLFNN--NLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 560 yQ~~gv~~l~~~~~~--~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
+|...|+-+...... ..+-++..+.|+|||-++.++...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 377777766655433 334588999999999999999998865
No 279
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.82 E-value=0.73 Score=56.26 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=67.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH-HhcCCCCcEEEEeCCccHHHHHHHHHHHcC--CCcEEEecCChhHHHHHHHHhh
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLM-EKKKVNGPFLIIVPLSTLSNWSLEFERWAP--SVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~-~~~~~~~p~LIV~P~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
...+++-++|+|||.+++.++.++. ..+ ...+.+|.-..--..-...+..|+- ++.+....
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~-------------- 285 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVY-------------- 285 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccC--------------
Confidence 3456788899999999888887765 222 2335555533211111123333331 12221111
Q ss_pred ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchH---HHHHHHHh-ccCCceeeeccCCCCCChHHHHHHH
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCK---LTHILNTF-YVAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk---~~~~l~~~-~~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
+...+......+. .+++||||-+-+....... +...+... ......++|++|.-.+.+.+++..+
T Consensus 286 ---------~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 286 ---------DPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred ---------CHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 1111111111111 4799999998775443322 22222211 1234468899998777888877777
Q ss_pred hhhc
Q psy1544 729 NFLL 732 (1331)
Q Consensus 729 ~fL~ 732 (1331)
+.+.
T Consensus 355 ~~~~ 358 (424)
T PRK05703 355 SRLP 358 (424)
T ss_pred CCCC
Confidence 6654
No 280
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.48 Score=59.63 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
-||..+.|+|||..+..++..|...
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3889999999999999999888763
No 281
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.72 E-value=0.46 Score=55.92 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCccHHHHHHHHHHHHHh----cCCCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 555 GKLKEYQIKGLEWMVSLF----NNNLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~----~~~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
+..+.+...++.++.... ..+.+.+|..++|+|||..+.+++..++..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 356667767776554332 245666888999999999999999888764
No 282
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.66 E-value=0.99 Score=53.74 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=66.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc----cHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhh
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS----TLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s----ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
...|.-.+|+|||..+..++..+...+ ..+++|.--. .+.||..-... .++.+.+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt~RiaAvEQLk~yae~--lgipv~v---------------- 301 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDHSRIGTVQQLQDYVKT--IGFEVIA---------------- 301 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHHHhhh--cCCcEEe----------------
Confidence 346778899999999888887765332 2355555422 33455432111 1222221
Q ss_pred ccCccEEEeeHHHHHhccCcccc-cCccEEEEeCCcccCCcchHHH---HHHHHhccCCceeeeccCCCCCChHHHHHHH
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAK-LHWKYMIIDEGHRMKNHHCKLT---HILNTFYVAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~-~~~~~vIiDEaHrikn~~sk~~---~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
+.+...+.+....+.. .++|+||||-+=+.-+....+. +.+.........|.|+||--.+.+.++...+
T Consensus 302 -------~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 302 -------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred -------cCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 1122223222222221 2479999999877644333222 2232221222346688886666666666666
Q ss_pred hhh
Q psy1544 729 NFL 731 (1331)
Q Consensus 729 ~fL 731 (1331)
+.+
T Consensus 375 ~~~ 377 (436)
T PRK11889 375 KDI 377 (436)
T ss_pred cCC
Confidence 554
No 283
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.59 E-value=0.53 Score=61.86 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
-||.-+.|+|||..+..|+..|.+..
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~ 65 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVE 65 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccc
Confidence 37999999999999999998887643
No 284
>KOG0442|consensus
Probab=93.50 E-value=7.4 Score=49.84 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=34.2
Q ss_pred ccccccchhHHHHHhhhh-hhc---------CCCeeEEEeccHHHHHHHHHHHHh
Q psy1544 876 DLYRVSGKFELLDRILPK-LKS---------TGHRVLLFCQMTQLMNILEDYFSY 920 (1331)
Q Consensus 876 ~l~~~s~K~~~L~~lL~~-l~~---------~g~KVLIFsq~~~~ld~L~~~L~~ 920 (1331)
......+|+..|.++|.+ ... ....|||-|..-.++..|.++|..
T Consensus 346 ~~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 346 SELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred cccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 345678999999999933 221 123699999999999999998874
No 285
>PRK08727 hypothetical protein; Validated
Probab=93.42 E-value=0.33 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=20.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
.+|..+.|+|||..+.+++..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5889999999999888888776554
No 286
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.35 E-value=0.39 Score=53.92 Aligned_cols=26 Identities=19% Similarity=-0.004 Sum_probs=20.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
...+|..+.|+|||..+.++...+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999888777776654
No 287
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.34 Score=57.06 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.++|+|....+.++..-.-...-++..+.|+|||..|..++..++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 368999999998887411112236889999999999999999988754
No 288
>PF13245 AAA_19: Part of AAA domain
Probab=93.18 E-value=0.28 Score=44.69 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=33.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHh-cCCCCcEEEEeCCccHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEK-KKVNGPFLIIVPLSTLSN 620 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~-~~~~~p~LIV~P~sll~q 620 (1331)
.-.++-...|+|||.+++..+.++... .....++|||+|+....+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 334668899999999999999988853 222556999999966533
No 289
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.18 E-value=0.62 Score=59.94 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHHHH-hc-CCC-ceE-EecCCCCCHHHHHHHHHHHHHHh
Q psy1544 557 LKEYQIKGLEWMVSL-FN-NNL-NGI-LADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~-~~-~~~-~gI-LADemGlGKTi~ai~li~~l~~~ 602 (1331)
=|+-|++.|...+.- +. .+. ++| |...+|+|||.++-.++..|...
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 478888888665553 32 222 333 89999999999999988877543
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.13 E-value=0.26 Score=58.35 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCC--ceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 562 IKGLEWMVSLFNNNL--NGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 562 ~~gv~~l~~~~~~~~--~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
...+.++.....++. ..+|..+.|+|||..+.+++..+..
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334445545444544 5689999999999999998887754
No 291
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.09 E-value=0.56 Score=57.97 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=57.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCcc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFN 657 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 657 (1331)
.+|..+.|+|||..+-++...+...... ..++.|.....+..+...+.. +
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~~-~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNPN-AKVVYVTSEKFTNDFVNALRN-----------N------------------ 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 5789999999999998888887665322 224444333333333332211 0
Q ss_pred EEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 658 VLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 658 VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
+.+.+.. .+. ..++|||||.|.+.+.. ..++..+..++.....+++|++
T Consensus 201 ----~~~~~~~---~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 ----TMEEFKE---KYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred ----cHHHHHH---HHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 0011111 111 36899999999986643 2355555555555556788776
No 292
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.08 E-value=0.27 Score=53.48 Aligned_cols=130 Identities=18% Similarity=0.183 Sum_probs=68.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASK 655 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~ 655 (1331)
.+|+-++|.|||-++.-+++++... ...+.+|+--.-..--.++++.|+-.+.+-++... .+.......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~------ 74 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIARE------ 74 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHH------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHH------
Confidence 3678899999999998888888666 33466666543333334445555433333332211 111111111
Q ss_pred ccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcch---HHHHHHHHhccCCceeeeccCCCCCChHHHHHHHh
Q psy1544 656 FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLN 729 (1331)
Q Consensus 656 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~ 729 (1331)
....+..-++|+|+||-+.+.-+... .+...+.........|+|+||--+..+..+.....
T Consensus 75 -------------~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~ 138 (196)
T PF00448_consen 75 -------------ALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE 138 (196)
T ss_dssp -------------HHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH
T ss_pred -------------HHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh
Confidence 11112223579999999987755433 23333333323455688999875555544444333
No 293
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=93.07 E-value=0.12 Score=69.97 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=4.1
Q ss_pred CCCCHHH
Q psy1544 90 HAFTSAQ 96 (1331)
Q Consensus 90 ~~fs~~q 96 (1331)
.+|+..+
T Consensus 1635 ~aF~L~g 1641 (2039)
T PRK15319 1635 DAFELKN 1641 (2039)
T ss_pred CceEccC
Confidence 3677753
No 294
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.75 Score=52.19 Aligned_cols=62 Identities=29% Similarity=0.355 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
+...+.-....+.++.|.+|.-..|+|||..|+|+...+. .. +..|+++.=..++.++...+
T Consensus 91 ~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 91 ALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred HHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHHHHHHHHHH
Confidence 4444444455566788889999999999999999999988 32 23466665555555555444
No 295
>KOG0991|consensus
Probab=92.90 E-value=0.2 Score=54.21 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=23.9
Q ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.+-.+-|++.+.|+|||..+..++..|+-
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 34456799999999999999999888764
No 296
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=92.89 E-value=0.13 Score=69.67 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.8
Q ss_pred EEEeCC
Q psy1544 610 LIIVPL 615 (1331)
Q Consensus 610 LIV~P~ 615 (1331)
++|-|-
T Consensus 1910 w~LEPQ 1915 (2039)
T PRK15319 1910 VSLTPQ 1915 (2039)
T ss_pred EEEEEE
Confidence 444444
No 297
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.83 E-value=0.81 Score=58.32 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++.- .|+..+.|+|||..|-.++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 44444444444444332 4789999999999999999888764
No 298
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.82 E-value=0.4 Score=49.25 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=37.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCC--CCEEEEeCCCC
Q psy1544 925 YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQT--ADTVIIFDSDW 980 (1331)
Q Consensus 925 ~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~--ad~VI~~D~~w 980 (1331)
.+.+-| .+..+...+++.|.....+ .+|+++...++|||+++ +..||+.-.|+
T Consensus 25 ~i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344444 3444678899999853221 35777777999999996 78899988775
No 299
>PRK06921 hypothetical protein; Provisional
Probab=92.81 E-value=0.45 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
+.+.+|.-++|+|||..+.+++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4567889999999999999998888764
No 300
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.79 E-value=0.62 Score=56.78 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=56.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCcc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFN 657 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 657 (1331)
.+|..+.|+|||..+-++...+...... ..++.|.....+..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~-~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPN-AKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCC-CcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 4789999999999998888887765322 224444322222222211110 0
Q ss_pred EEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 658 VLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 658 VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
+.+.+... +. ..++|||||.|.+.+.. ..++..+..++.....+++|++
T Consensus 189 ----~~~~~~~~---~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 ----KMEEFKEK---YR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred ----CHHHHHHH---HH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 01111110 11 25799999999986643 2355556555555567888886
No 301
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.65 E-value=1.5 Score=46.21 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHhcCC
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEKKKV 605 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~~~~ 605 (1331)
|.+.+..+...+.++. . -|+..+.|+||+-.|..++..++.....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5666666666665553 2 3888999999999999999988776543
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.58 E-value=0.95 Score=53.99 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=64.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcC--CCcEEEecCChhHHHHHHHHh
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAP--SVNVVAYKGSPHLRKTLQAQM 651 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~ 651 (1331)
.+...+|..++|+|||.++..++..+....+. ..+.+|+-......=.+.+..|+. ++.+.......+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l---- 210 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL---- 210 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH----
Confidence 45556889999999999998888876544322 235555543322222233333321 22333222222111111
Q ss_pred hccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc----cCCceeeeccCCCCCChHHHH
Q psy1544 652 KASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY----VAPHRLLLTGTPLQNKLPELW 725 (1331)
Q Consensus 652 ~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~----~~~~rllLTgTPlqN~l~EL~ 725 (1331)
..+ .+.++|+||.+=+.-.... +...+..+. .....|+|+||--...+.+.+
T Consensus 211 -------------------~~l--~~~DlVLIDTaG~~~~d~~-l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 211 -------------------AEL--RNKHMVLIDTIGMSQRDRT-VSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -------------------HHh--cCCCEEEEcCCCCCcccHH-HHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 111 1358999999976533222 223333221 123468899997665555543
No 303
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.6 Score=58.93 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. ..|+..+.|+|||..|..++..+...
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3344444444444443 33899999999999998888887553
No 304
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.50 E-value=0.5 Score=61.44 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~ 602 (1331)
||..+.|+|||..+-.|+..+...
T Consensus 42 LFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhccCc
Confidence 799999999999999998887654
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.50 E-value=0.45 Score=60.09 Aligned_cols=42 Identities=21% Similarity=0.107 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+..+. . -|+..+.|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5555555555544432 2 3789999999999999999888754
No 306
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=92.28 E-value=0.26 Score=49.17 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=48.5
Q ss_pred CCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1263 PMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1263 Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|.||..+++|+..|.|+|+.+|.+||-.|+.-+..=-+....+-+.-..+.-+|.+.+.++..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~ 121 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP 121 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999887744433333444444556667777777654
No 307
>CHL00181 cbbX CbbX; Provisional
Probab=92.21 E-value=0.24 Score=57.20 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=22.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.+.+|.-+.|+|||..|-+++..+...+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3458899999999999988887765543
No 308
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.10 E-value=0.96 Score=56.98 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=58.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCcc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFN 657 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 657 (1331)
.+|....|+|||..+.++..++...... ..++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g-~~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPG-TRVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 5788999999999988888877653322 224444433333333322211 0
Q ss_pred EEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 658 VLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 658 VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
.++.+.+. +. ..++||||+.|.+.+.. ..++..+..++.....|++|+.
T Consensus 367 ----~~~~f~~~---y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 ----KGDSFRRR---YR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred ----cHHHHHHH---hh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 01111110 11 35899999999997654 3466677666655566777775
No 309
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.10 E-value=0.89 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|...+..+...+.++. . -|+..+.|+|||..|-.++..+....
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK 66 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4555555555443332 2 38899999999999999988886543
No 310
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.99 E-value=0.7 Score=58.68 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCc--e-EEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN--G-ILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~--g-ILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++.. . |+..+.|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 55555555555544432 3 889999999999999998888764
No 311
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.97 E-value=1.2 Score=54.89 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=57.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCcc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFN 657 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~ 657 (1331)
.+|..++|+|||..+-++..++...... ..++.|.....+......+..-. .
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv~~~~f~~~~~~~l~~~~---------------~------------ 195 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSD-LKVSYMSGDEFARKAVDILQKTH---------------K------------ 195 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHHHHhh---------------h------------
Confidence 4689999999998887777776554332 33454444333333333332100 0
Q ss_pred EEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 658 VLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 658 VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
.++.+... + ...++|||||+|.+.+.. ..++..+..++.....++||+.
T Consensus 196 ----~~~~~~~~---~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 196 ----EIEQFKNE---I--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ----HHHHHHHH---h--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 01111111 1 146899999999997643 2455666666555557888854
No 312
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.92 E-value=0.87 Score=56.66 Aligned_cols=42 Identities=17% Similarity=0.070 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. ..||..+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5555555544333433 46899999999999999998888654
No 313
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.86 E-value=0.85 Score=56.07 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=56.5
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCc
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKF 656 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~ 656 (1331)
..+|..++|+|||..+-++...+....... .++.|.....+......+.. +.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-~v~yi~~~~f~~~~~~~~~~-----------~~---------------- 183 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITSEKFLNDLVDSMKE-----------GK---------------- 183 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEEHHHHHHHHHHHHhc-----------cc----------------
Confidence 358899999999999888888876654322 24544432222212111110 00
Q ss_pred cEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 657 NVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 657 ~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
.+.+... + ....+++||||.|.+.+.. ..++..+..++.....+++|++
T Consensus 184 ------~~~f~~~---~-~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 184 ------LNEFREK---Y-RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred ------HHHHHHH---H-HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 0001000 0 0146899999999985543 2455666666555556788775
No 314
>KOG1133|consensus
Probab=91.80 E-value=11 Score=47.23 Aligned_cols=327 Identities=13% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc---cCcccccCccEEEEeCCcccCC-------
Q psy1544 622 SLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD---KGPLAKLHWKYMIIDEGHRMKN------- 691 (1331)
Q Consensus 622 ~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~---~~~l~~~~~~~vIiDEaHrikn------- 691 (1331)
..++-..+...+++.|+|+...-.. .++|+.-|+.+... ...=-..+-.+|||||||++-+
T Consensus 299 iEdLv~lGk~~~~CPYY~SR~avp~---------aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smhs 369 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYASRRAVPQ---------AQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMHS 369 (821)
T ss_pred HHHHHHhhhhcCCCCchhhhhcccc---------ccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhhh
Q ss_pred ---cchHHHHHHHHh--ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHH--
Q psy1544 692 ---HHCKLTHILNTF--YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEET-- 764 (1331)
Q Consensus 692 ---~~sk~~~~l~~~--~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~-- 764 (1331)
..+++..+...+ |..++-.-|.| +|+.-|-.++.++ ..|...+...+...+....+.....
T Consensus 370 a~Is~~ql~~a~~~i~~Y~~rf~~rl~~----~N~~~l~ql~~l~--------~~ll~fl~~~~~~~~~~~~~~~~dfl~ 437 (821)
T KOG1133|consen 370 AEISFSQLCRAHKQIQQYFERFGKRLKA----KNLMYLKQLLSLL--------RRLLKFLDSNCELNGNGESLMRNDFLF 437 (821)
T ss_pred hheeHHHHHHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHH--------HHHHHHHHhhhhhCCcccccchhhhhh
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhhhCC------------------------C----------------------
Q psy1544 765 -----ILIIRRLHKVLRPFLLRRLKKEVESQLP------------------------D---------------------- 793 (1331)
Q Consensus 765 -----~~~~~rL~~~L~p~~lRR~k~~v~~~LP------------------------~---------------------- 793 (1331)
..++..|...+.--.+-|........+- +
T Consensus 438 ~~~id~iNL~kl~~Yi~~S~i~rKv~G~~~r~~~~~s~plq~l~~~~~~~~ee~~~~ps~l~~l~~FL~~LTn~~~dGri 517 (821)
T KOG1133|consen 438 SSGIDNINLFKLLDYIEKSKIARKVDGFGERLSEVFSQPLQSLQKKRVEAEEESQLKPSPLFELSSFLGALTNNNEDGRI 517 (821)
T ss_pred hcCccceeHHHHHHHHHHhhHHHHhcchhhcchhhccchhhHhhhccccchhcccCCCchhHHHHHHHHHHhCCCCCCcE
Q ss_pred -------ceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHH---------hcCCccchhh
Q psy1544 794 -------KVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRK---------LCNHPFMFQN 857 (1331)
Q Consensus 794 -------k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk---------~~~hp~l~~~ 857 (1331)
.....+....+..-..+......-.. ..+.+..+-..+.+|-. .|+|-..-..
T Consensus 518 ~~~k~~s~~lky~lL~pA~~f~evv~earavvL-----------AGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~ 586 (821)
T KOG1133|consen 518 FYSKQGSGTLKYMLLNPAKHFAEVVLEARAVVL-----------AGGTMEPVDELREQLFPGCPERISPFSCSHVIPPEN 586 (821)
T ss_pred EEeccCCceEEEEecCcHHHHHHHHHHhheeee-----------cCCccccHHHHHHHhcccchhhccceecccccChhh
Q ss_pred hHhhhhhc-cCCCCcccCCccccccchhHHHHHhhhhhhc-CCCeeEEEeccHHHHHHHHHHHHhcCC-------eEEEE
Q psy1544 858 IEEKFSDH-VGGSGIVSGPDLYRVSGKFELLDRILPKLKS-TGHRVLLFCQMTQLMNILEDYFSYRGF-------KYMRL 928 (1331)
Q Consensus 858 ~~~~~~~~-~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~-~g~KVLIFsq~~~~ld~L~~~L~~~g~-------~~~~i 928 (1331)
+....... ..+..+.-...--....-+.-|-.++..+.. -..-||+|..+-+.+..+...+...|+ +-+.+
T Consensus 587 il~~vv~~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~ 666 (821)
T KOG1133|consen 587 ILPLVVSSGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFY 666 (821)
T ss_pred eeeeeeccCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhc
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCC--CCEEEEeCCCC
Q psy1544 929 DGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQT--ADTVIIFDSDW 980 (1331)
Q Consensus 929 dG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~--ad~VI~~D~~w 980 (1331)
-...+.++--.-...=.....+...|-|-.--.++|||+.+ |..||+...|+
T Consensus 667 E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 667 EPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred cCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCC
No 315
>PRK05642 DNA replication initiation factor; Validated
Probab=91.78 E-value=0.78 Score=51.44 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=27.5
Q ss_pred ccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 678 WKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 678 ~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
.++||||+.|.+.+.. ..++..+..++....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4799999999886532 3466666666555677888887
No 316
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.76 E-value=0.26 Score=56.88 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCC-CCcEEEEe
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKV-NGPFLIIV 613 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~-~~p~LIV~ 613 (1331)
+.+.+|..++|+|||..|.+++..+...+.. .++++.|.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3456888999999999998888777654432 23444443
No 317
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.65 E-value=1.1 Score=58.73 Aligned_cols=129 Identities=13% Similarity=0.099 Sum_probs=73.5
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
+..|.+-|..++..++. .+.-.+|....|+|||.++-+++..+... ...+++++|+.....-..+- . +..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~Aa~~L~~~---~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKAAEGLQAE---S-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHHHHHHHhc---c-CCc
Confidence 35789999999987763 23456888999999998876665544332 34588889987553222210 0 110
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
... +..... . +..... .....++||||||-.+.... +...+.......-+|+|-
T Consensus 420 a~T----------i~~~~~---------~---~~~~~~--~~~~~~llIvDEasMv~~~~--~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 420 SRT----------LASLEY---------A---WANGRD--LLSDKDVLVIDEAGMVGSRQ--MARVLKEAEEAGAKVVLV 473 (744)
T ss_pred eee----------HHHHHh---------h---hccCcc--cCCCCcEEEEECcccCCHHH--HHHHHHHHHhcCCEEEEE
Confidence 000 000000 0 001111 11357999999999886543 233444333456678888
Q ss_pred cCCCC
Q psy1544 714 GTPLQ 718 (1331)
Q Consensus 714 gTPlq 718 (1331)
|=+-|
T Consensus 474 GD~~Q 478 (744)
T TIGR02768 474 GDPEQ 478 (744)
T ss_pred CChHH
Confidence 86543
No 318
>PRK06893 DNA replication initiation factor; Validated
Probab=91.65 E-value=1 Score=50.30 Aligned_cols=25 Identities=12% Similarity=-0.063 Sum_probs=20.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
.+|..+.|+|||..+.+++..+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999988888776654
No 319
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.60 E-value=1.5 Score=51.45 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=40.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
..++|+|....+.+...+.++. .-++..+.|+||+..|.+++..++...
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 4689999999999888776554 247889999999999999999988754
No 320
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.49 E-value=1.1 Score=49.76 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=21.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.+...+|..+.|+|||..+.++...+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445689999999999988877776544
No 321
>PF13173 AAA_14: AAA domain
Probab=91.39 E-value=1.2 Score=44.71 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCC
Q psy1544 677 HWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 677 ~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
.-.+|||||+|++.+....+...+.. .....+++||+-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~--~~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDN--GPNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHh--ccCceEEEEccc
Confidence 45789999999998755443333322 134689999984
No 322
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.31 E-value=1.2 Score=55.83 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|..++..+...+.++.. .|+..+.|+|||..|..++..+...
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44444444444444332 4789999999999999998888653
No 323
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.23 E-value=0.78 Score=55.37 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
-|+..+.|+|||..|..++..+....
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 47899999999999999988876643
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.18 E-value=0.23 Score=53.21 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=36.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
.+++.+.|+|||..++.++...... ..++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCHHHHHHHHHHc
Confidence 3678899999999999998877643 34588998777776666666554
No 325
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.17 E-value=0.55 Score=48.27 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCC----eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccc--cccccCCCC--CCEEEEeCCCC
Q psy1544 911 MNILEDYFSYRGF----KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRA--GGLGLNLQT--ADTVIIFDSDW 980 (1331)
Q Consensus 911 ld~L~~~L~~~g~----~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a--ggeGLNL~~--ad~VI~~D~~w 980 (1331)
++.+...+...++ ..+.+.+... .+...+++.|+......-.+|+++.. .+||||+++ +..||+...|+
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3444444444332 2344445432 35578899998532200124555554 799999997 78999988775
No 326
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.11 E-value=1.2 Score=55.73 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|...+..+...+.++.- -|+..+.|+|||-.|-.++..+....
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~ 64 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ 64 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCC
Confidence 44444444444434432 27899999999999999988886543
No 327
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=91.10 E-value=2.6 Score=53.25 Aligned_cols=141 Identities=11% Similarity=0.160 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHH----HH-----H
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLE----FE-----R 627 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E----~~-----k 627 (1331)
-|+=.+-|..++..|.+...+++++ =|.|||..+..++..+.... ...++|.+|.. +...-... ++ .
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 3445566777888888888777765 79999988776666665433 23488888863 22222222 22 4
Q ss_pred HcCCCc-EEEecCChhHHHHHHHHhhccCccEEEeeHH----------HHHhccCcccccCccEEEEeCCcccCCcchHH
Q psy1544 628 WAPSVN-VVAYKGSPHLRKTLQAQMKASKFNVLLTTYE----------YVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKL 696 (1331)
Q Consensus 628 ~~p~~~-v~~~~g~~~~r~~~~~~~~~~~~~VvItTye----------~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~ 696 (1331)
|++... +....|.. ..|.+.... +..+..+......+++||||||+-+... .+
T Consensus 248 ~fp~~~~iv~vkgg~--------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~--~l 311 (752)
T PHA03333 248 WFPEEFKIVTLKGTD--------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPG--AL 311 (752)
T ss_pred ccCCCceEEEeeCCe--------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHH--HH
Confidence 665432 22233221 122222211 1112233344457899999999999763 23
Q ss_pred HHHHHHhccCCceeeeccCCC
Q psy1544 697 THILNTFYVAPHRLLLTGTPL 717 (1331)
Q Consensus 697 ~~~l~~~~~~~~rllLTgTPl 717 (1331)
..++-.+......+++..||.
T Consensus 312 ~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 312 LSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHccCCCceEEEeCCC
Confidence 333333333455566666653
No 328
>PHA02533 17 large terminase protein; Provisional
Probab=91.01 E-value=1.5 Score=54.99 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=73.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHH---c
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERW---A 629 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~---~ 629 (1331)
...|.|+|...+..|.. ++-.++.-.=..|||..+.+++.++..... ..-+++++|..-- ..-.+.+... .
T Consensus 57 Pf~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred ecCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 35799999999887642 223355555789999988776655544333 3357888886322 1111222221 1
Q ss_pred CCC-cEEEecCChhHHHHHHHHhh-ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc--
Q psy1544 630 PSV-NVVAYKGSPHLRKTLQAQMK-ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV-- 705 (1331)
Q Consensus 630 p~~-~v~~~~g~~~~r~~~~~~~~-~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~-- 705 (1331)
|.. ...+...+ + ..+. ..+..|.+.| .+.+.......+++||||+|.+++.. .+..++.....
T Consensus 132 P~l~~~~i~~~~---~----~~I~l~NGS~I~~ls-----s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEWN---K----GSIELENGSKIGAYA-----SSPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeecC---c----cEEEeCCCCEEEEEe-----CCCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcC
Confidence 211 00000000 0 0000 0111121111 12233455577899999999988754 22232222222
Q ss_pred CCceeeeccCCC
Q psy1544 706 APHRLLLTGTPL 717 (1331)
Q Consensus 706 ~~~rllLTgTPl 717 (1331)
...++++..||-
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 224678888884
No 329
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.98 E-value=1.5 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.-|+..+.|+|||..|..++..+....
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 358999999999999988887776543
No 330
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.94 E-value=1.4 Score=54.96 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCce---EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNLNG---ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~g---ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|..++..+...+..+.-+ |+..+.|+|||..+.+++..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 445555554444444333 8999999999999999988887543
No 331
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.81 E-value=1.9 Score=50.65 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=39.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCc--e-EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLN--G-ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~--g-ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.++|+|...-+.+...+.++.- + |+..+.|+||+..|..++..++...
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 3578888888888887766542 3 6889999999999999999998754
No 332
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.69 E-value=0.81 Score=54.72 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|..++..+...+.++. .-|+..+.|+|||..|.+++..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 6666666666655543 247899999999999999999998765
No 333
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.66 E-value=1.3 Score=56.71 Aligned_cols=42 Identities=19% Similarity=0.009 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|..++..+...+..+.. -|+..+.|+|||..|..++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 45555555555544433 3889999999999999999988764
No 334
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.65 E-value=1.6 Score=52.31 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCC--ce-EEecCCCCCHHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFNNNL--NG-ILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~g-ILADemGlGKTi~ai~li~~l~~ 601 (1331)
|...+..+...+..+. ++ |+..+.|+|||..|-.++..+..
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 5666665555554432 33 89999999999999888887753
No 335
>KOG1984|consensus
Probab=90.44 E-value=1.3 Score=56.18 Aligned_cols=7 Identities=57% Similarity=1.141 Sum_probs=4.1
Q ss_pred CCCCCCH
Q psy1544 193 KPEGLDP 199 (1331)
Q Consensus 193 ~P~g~d~ 199 (1331)
.|.-+|+
T Consensus 237 ~~~rldp 243 (1007)
T KOG1984|consen 237 PPQRLDP 243 (1007)
T ss_pred ccccCCh
Confidence 4556666
No 336
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.39 E-value=2.4 Score=54.21 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. ..||..+.|+|||..|..++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4444444444444433 34889999999999999998887654
No 337
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.34 E-value=1.1 Score=53.03 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=40.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.++|||....+.+...+.+++- -|++.+-|+||+..|.+++.+++...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4789999999888888766543 37899999999999999999998754
No 338
>PRK12377 putative replication protein; Provisional
Probab=90.14 E-value=2.2 Score=48.23 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=22.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
.+.+|..++|+|||..+.+++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 455788899999999999999988754
No 339
>KOG0307|consensus
Probab=90.07 E-value=2.5 Score=55.22 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q psy1544 320 CKDFKEYHRNN 330 (1331)
Q Consensus 320 ~~~~~~~~~~~ 330 (1331)
..+|.|-..|-
T Consensus 1025 tt~~~E~s~wm 1035 (1049)
T KOG0307|consen 1025 TTEFDECSSWM 1035 (1049)
T ss_pred hcchhhhhhHH
Confidence 55565554443
No 340
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.06 E-value=1.8 Score=54.50 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. . .|+..+.|+|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444544444443332 2 3799999999999998888887653
No 341
>KOG2391|consensus
Probab=90.02 E-value=37 Score=39.27 Aligned_cols=10 Identities=30% Similarity=0.667 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q psy1544 322 DFKEYHRNNQ 331 (1331)
Q Consensus 322 ~~~~~~~~~~ 331 (1331)
+|.+|-|+.+
T Consensus 332 ~l~~yLr~VR 341 (365)
T KOG2391|consen 332 DLDQYLRHVR 341 (365)
T ss_pred eHHHHHHHHH
Confidence 4555555443
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=1.8 Score=54.83 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
-|+..+.|+|||..|-.++..+....
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 37799999999999988888776543
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=89.94 E-value=2.1 Score=50.43 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=23.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
.++....|+|||.++..++.++... ...++++..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~ 176 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAG 176 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 4678899999999888887766543 234555554
No 344
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=89.87 E-value=1 Score=44.84 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=25.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN 620 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q 620 (1331)
+|.-+.|+|||..+-.++.++ ..+++.|....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccccc
Confidence 677889999999887777765 234566666555533
No 345
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=89.81 E-value=1.6 Score=48.39 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=28.4
Q ss_pred CccEEEEeCCcccCCcc---hHHHHHHHHhccCCceeeeccC
Q psy1544 677 HWKYMIIDEGHRMKNHH---CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 677 ~~~~vIiDEaHrikn~~---sk~~~~l~~~~~~~~rllLTgT 715 (1331)
..+++|||..|.+.+.. ..++..+..+......+++|+-
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 47999999999998764 3455666665556667887773
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.65 E-value=4.6 Score=50.08 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=25.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
+...+|...+|+|||..+..++..+...... +.+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-kkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-RDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 4445677889999999988887766554322 2355554
No 347
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.50 E-value=2.1 Score=48.75 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCC-ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 559 EYQIKGLEWMVSLFNNNL-NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~-~gILADemGlGKTi~ai~li~~l 599 (1331)
+.+..++..+......+. ..+|.-+.|+|||..+-.++..+
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 334555555544444433 36789999999998776665444
No 348
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.44 E-value=3.8 Score=47.91 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.+|..+.|+|||..+-.++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999998888877664
No 349
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.36 E-value=1.9 Score=49.48 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCCC-----ceEEecCCCCCHHHHHHHHH
Q psy1544 559 EYQIKGLEWMVSLFNNNL-----NGILADEMGLGKTIQTIALI 596 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~-----~gILADemGlGKTi~ai~li 596 (1331)
|.=.++++.|-.++.... +-+|..++|.|||.++=-|.
T Consensus 40 ~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~ 82 (302)
T PF05621_consen 40 PRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFR 82 (302)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHH
Confidence 333456666666654433 45788899999997654443
No 350
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.29 E-value=1.9 Score=50.53 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=39.7
Q ss_pred CccHHHHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.++|+|...-+.+...+.++.- -++..+.|+||+..|..++..++...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 5789999998888887655542 37889999999999999999998765
No 351
>PRK04195 replication factor C large subunit; Provisional
Probab=89.25 E-value=2.8 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=20.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
....||..+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999998887776654
No 352
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.15 E-value=1.9 Score=54.78 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|...+..+...+..+. .-||..+.|+|||..|..++..+....
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 4444444444443433 358899999999999999998887653
No 353
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.10 E-value=3.4 Score=50.18 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. .-|+..+.|+|||..|..++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444444545444442 24789999999999999998888654
No 354
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.07 E-value=3.2 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=17.5
Q ss_pred ceEE-ecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGIL-ADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gIL-ADemGlGKTi~ai~li~~l 599 (1331)
+.+| ..+.|+|||..+-+++..+
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4455 8999999998877776544
No 355
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=88.98 E-value=2.3 Score=56.92 Aligned_cols=130 Identities=15% Similarity=0.080 Sum_probs=72.8
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
+..|.+-|.++|..++. .+.-.+|.-..|+|||.+.- .+..+++.. ...+++++|+.....-..+ -.
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~-~~~~~~e~~--G~~V~~~ApTGkAA~~L~e---~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLG-VAREAWEAA--GYEVRGAALSGIAAENLEG---GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHH-HHHHHHHHc--CCeEEEecCcHHHHHHHhh---cc----
Confidence 44799999999997774 23346788889999998643 344444432 3447888898654322211 00
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
|.. -..+..... . +...... ....++||||||-.+.... +...+........+|+|.
T Consensus 411 -----Gi~--a~TI~sll~--~----------~~~~~~~--l~~~~vlIVDEASMv~~~~--m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 411 -----GIA--SRTIASLEH--G----------WGQGRDL--LTSRDVLVIDEAGMVGTRQ--LERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----Ccc--hhhHHHHHh--h----------hcccccc--cccCcEEEEECcccCCHHH--HHHHHHhhhhCCCEEEEE
Confidence 000 011111100 0 0001111 1245899999999875443 334444333556789999
Q ss_pred cCCCCC
Q psy1544 714 GTPLQN 719 (1331)
Q Consensus 714 gTPlqN 719 (1331)
|=|-|.
T Consensus 468 GD~~QL 473 (988)
T PRK13889 468 GDPQQL 473 (988)
T ss_pred CCHHHc
Confidence 987554
No 356
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=88.77 E-value=1.7 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKK 604 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~ 604 (1331)
-+|+.+.|+|||..|.+++..+.....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~ 53 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENP 53 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 588999999999999999999876543
No 357
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.63 E-value=2.2 Score=51.09 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHh-c--CCCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 558 KEYQIKGLEWMVSLF-N--NNLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~-~--~~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|+.|++.+...+... . ...+.+|..+.|+|||.++-.++..+...
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 667777665554432 2 22456889999999999988888877543
No 358
>KOG0952|consensus
Probab=88.56 E-value=0.43 Score=61.55 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=73.9
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-----HHHHHHHHHHcCCCcEEEecCChhHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-----SNWSLEFERWAPSVNVVAYKGSPHLRKT 646 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-----~qW~~E~~k~~p~~~v~~~~g~~~~r~~ 646 (1331)
|....+.++.+++|+|||+.+-..+.+.+...+. +.+.+|+|..-+ ..|...+.. ++++++-..|...-.
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd-- 1014 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD-- 1014 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC--
Confidence 3445567899999999999875555554444444 559999998544 457655533 467777666653211
Q ss_pred HHHHhhccCccEEEeeHHHHHhccCccccc----CccEEEEeCCcccCCc
Q psy1544 647 LQAQMKASKFNVLLTTYEYVIKDKGPLAKL----HWKYMIIDEGHRMKNH 692 (1331)
Q Consensus 647 ~~~~~~~~~~~VvItTye~l~~~~~~l~~~----~~~~vIiDEaHrikn~ 692 (1331)
...-...+++|||++........+... .+..+|+||.|.++..
T Consensus 1015 ---~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 ---VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ---hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 011235689999999876554433222 4577999999988654
No 359
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.43 E-value=1.8 Score=55.24 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. .-|+..+.|+|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5566666666554432 24789999999999999999888664
No 360
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.41 E-value=3 Score=52.62 Aligned_cols=43 Identities=21% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|...+..+...+.++. .-|+..+.|+|||..|..++..+....
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4444555555543432 237899999999999999998886543
No 361
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.32 E-value=2.6 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.216 Sum_probs=20.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 578 GILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.||..+.|+|||..|-.++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 389999999999999888877654
No 362
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.31 E-value=2.1 Score=54.16 Aligned_cols=42 Identities=24% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|..++..+...+.++.- -|+..+.|+|||..|-.++..+...
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 44444444444434332 3899999999999999998888654
No 363
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=88.28 E-value=1.3 Score=49.83 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhccCCC
Q psy1544 95 AQVQQLRFQIMAYRLLARNQ 114 (1331)
Q Consensus 95 ~ql~~LraQi~ayk~l~~~~ 114 (1331)
.-|..||+||.+--.+.-.+
T Consensus 129 dELs~LRaQIA~IV~~qe~~ 148 (253)
T PF05308_consen 129 DELSRLRAQIAKIVAAQEQS 148 (253)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 46889999999877654333
No 364
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.16 E-value=2 Score=50.73 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCC--ce-EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEE
Q psy1544 560 YQIKGLEWMVSLFNNNL--NG-ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVA 636 (1331)
Q Consensus 560 yQ~~gv~~l~~~~~~~~--~g-ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~ 636 (1331)
.|...+..+...+..+. .. |+..+-|+|||..|..++..++........ |-..+.....-.....|++.++.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 35556665555554433 23 889999999999999999888765322221 22223333333334456665555
Q ss_pred ecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc-hHHHHHHHHhccCCceeeeccC
Q psy1544 637 YKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH-CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 637 ~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~-sk~~~~l~~~~~~~~rllLTgT 715 (1331)
..|..-....++.... .+. ... + .-.+.++||||||+|.... ..+.+.+..- ...-.++|+++
T Consensus 85 ~~~~~i~id~ir~l~~------------~~~-~~~-~-~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-p~~~~~Il~t~ 148 (329)
T PRK08058 85 PDGQSIKKDQIRYLKE------------EFS-KSG-V-ESNKKVYIIEHADKMTASAANSLLKFLEEP-SGGTTAILLTE 148 (329)
T ss_pred cccccCCHHHHHHHHH------------HHh-hCC-c-ccCceEEEeehHhhhCHHHHHHHHHHhcCC-CCCceEEEEeC
Confidence 4443211111111100 000 001 1 1257999999999995432 2233344331 23334556555
No 365
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.13 E-value=1.6 Score=53.60 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=55.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCc
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKF 656 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~ 656 (1331)
..+|..+.|+|||..+-+++..+... ...++.|............+.. +.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~-----------~~---------------- 192 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRS-----------GE---------------- 192 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhc-----------ch----------------
Confidence 35788899999999988888877653 2334444432222222111110 00
Q ss_pred cEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcch---HHHHHHHHhccCCceeeeccC
Q psy1544 657 NVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 657 ~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~~~~~rllLTgT 715 (1331)
.+.+... + ...++|||||.|.+.+... .++..+..++.....+++|++
T Consensus 193 ------~~~f~~~---~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 193 ------MQRFRQF---Y--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred ------HHHHHHH---c--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 0111110 0 1468999999999976432 344555544444567888885
No 366
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.10 E-value=2.6 Score=56.16 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhc--CCCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFN--NNLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 561 Q~~gv~~l~~~~~--~~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
|..-|.+++..+. ...|.||.-+.|+|||..+=+++..+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 4445777766433 334679999999999998877776654
No 367
>KOG0737|consensus
Probab=87.90 E-value=0.77 Score=53.40 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
....|.+|..+.|+|||..|-++.... ...++=|-=..+...|..|-++.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHH
Confidence 356777899999999999988876543 22233333334446777665553
No 368
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.79 E-value=3.2 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
-|+..+.|+|||.+|..++..+...
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhcccc
Confidence 4679999999999999999888653
No 369
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.70 E-value=5.8 Score=48.04 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=22.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.+.+|..+.|+|||..+-.++..+....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999888888775543
No 370
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.62 E-value=2.1 Score=57.18 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhc--CCCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFN--NNLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 561 Q~~gv~~l~~~~~--~~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
|..-|..++..+. ...+.||..+.|+|||..+-+++..+.
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3334677766432 344679999999999999888877654
No 371
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.36 E-value=2.8 Score=49.64 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCce-EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNG-ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~g-ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
++|+|...-+.+...-++-..+ ++..+.|+|||..|..++..++...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 5788888888777753222233 6789999999999999999998764
No 372
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.29 E-value=4.2 Score=50.61 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCC--ce-EEecCCCCCHHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFNNNL--NG-ILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~g-ILADemGlGKTi~ai~li~~l~~ 601 (1331)
|...+..+...+.++. ++ |+..+.|+|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555555554443 23 68999999999998888877754
No 373
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=87.24 E-value=2.3 Score=51.08 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=38.1
Q ss_pred CccEEEEeCCcccCCc---chHHHHHHHHhccCCceeeecc--CCCCCC--hHHHHHHHhh
Q psy1544 677 HWKYMIIDEGHRMKNH---HCKLTHILNTFYVAPHRLLLTG--TPLQNK--LPELWALLNF 730 (1331)
Q Consensus 677 ~~~~vIiDEaHrikn~---~sk~~~~l~~~~~~~~rllLTg--TPlqN~--l~EL~~ll~f 730 (1331)
..++++||-.+.+.+. ...++..++.+......|+||+ +|-.-+ ..+|.+-+.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 4589999999999776 4456677777766667899999 664332 3466665544
No 374
>KOG1925|consensus
Probab=87.22 E-value=3.1 Score=49.37 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHhhchHH
Q psy1544 231 EHLRVKAEIELRALKVLNF 249 (1331)
Q Consensus 231 ~~~~~~~~~e~~~l~l~~~ 249 (1331)
|..|+--+.|-++=+.++.
T Consensus 319 D~~r~~~LFEsr~~~~~P~ 337 (817)
T KOG1925|consen 319 DTARLEHLFESRAKEVLPS 337 (817)
T ss_pred cHHHHHHHHHHhhhhhccc
Confidence 4455555566665555554
No 375
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.95 E-value=3.4 Score=52.62 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCC--ce-EEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL--NG-ILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~g-ILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+...+.++. .. |+..+-|+|||..+..++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 4444444444433332 23 789999999999999998887654
No 376
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=86.68 E-value=1.1 Score=52.14 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCccH-HHHHHHHHH
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK-VNGPFLIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~-~~~p~LIV~P~sll-~qW~~E~~k 627 (1331)
|.+-|.++|.+ . ....++-...|+|||.+.+.-+.+++..++ ....+|||+.+... ..-...+..
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 45668888876 2 445566666999999999999999988763 34569999998654 333333433
No 377
>KOG0559|consensus
Probab=86.65 E-value=5.9 Score=45.59 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1544 207 ENRVALNIERRIEELNG 223 (1331)
Q Consensus 207 e~~i~~~i~~r~~el~~ 223 (1331)
=+|.-.||++|+++-+|
T Consensus 233 MnRmR~RIA~RLKdsQN 249 (457)
T KOG0559|consen 233 MNRMRLRIAERLKDSQN 249 (457)
T ss_pred hHHHHHHHHHHHHhhhh
Confidence 35677889999998887
No 378
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=86.63 E-value=3.8 Score=52.89 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|..+++.+...+..+. . .|+..+.|+|||..|-.++..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4444444444443432 2 3789999999999999998887654
No 379
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=86.44 E-value=5.3 Score=44.59 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=28.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH------HHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL------SNWSLEFER 627 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll------~qW~~E~~k 627 (1331)
-+.+..++|+|||+..=+++..+ . ....++|+.|..++ .-|..++..
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~-~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASL-N---EDQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhc-C---CCceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 34667899999999876444333 2 22334567777555 346666644
No 380
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=86.43 E-value=1.4 Score=55.39 Aligned_cols=125 Identities=10% Similarity=0.191 Sum_probs=66.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHH----HHHHHHHHcCCCcEEEecCChhHHHHHHHHhhc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSN----WSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKA 653 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~q----W~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 653 (1331)
++.-+=--|||..+..+|..++.... +..++++++.. +... ...-+++|++...+....|.. +.-....
T Consensus 258 VflVPRR~GKTwivv~iI~~ll~s~~-Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I~i~f~n 331 (738)
T PHA03368 258 VFLVPRRHGKTWFLVPLIALALATFR-GIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----ISFSFPD 331 (738)
T ss_pred EEEecccCCchhhHHHHHHHHHHhCC-CCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----EEEEecC
Confidence 45555678999987777776654433 23488888873 3333 344456687664443334321 0000001
Q ss_pred cC-ccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc-cCCceeeeccC
Q psy1544 654 SK-FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-VAPHRLLLTGT 715 (1331)
Q Consensus 654 ~~-~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-~~~~rllLTgT 715 (1331)
+. ..|.+.|- ...+.+....++++|||||+-++... +..++-.+. .....|.+|.|
T Consensus 332 G~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~a--l~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 332 GSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDA--VQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred CCccEEEEEec----cCCCCccCCcccEEEEechhhCCHHH--HHHHHHHHhccCccEEEEecC
Confidence 11 12222111 22334555689999999999997632 222232222 34566777766
No 381
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.42 E-value=2.7 Score=43.26 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=26.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST 617 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl 617 (1331)
+|..+.|+|||..+..++..+.. ..++++++.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE 38 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence 56778999999999888877654 2455676665433
No 382
>KOG0307|consensus
Probab=86.24 E-value=7.4 Score=51.06 Aligned_cols=16 Identities=6% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1544 390 LLSQTDEYISNLTQMV 405 (1331)
Q Consensus 390 ll~~t~~~~~~l~~~v 405 (1331)
...++..||-.|..++
T Consensus 1027 ~~~E~s~wmp~lK~ll 1042 (1049)
T KOG0307|consen 1027 EFDECSSWMPGLKRLL 1042 (1049)
T ss_pred chhhhhhHHHHHHHHH
Confidence 3444444554444444
No 383
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=86.21 E-value=5 Score=44.47 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCcEEEEe--CCccHHHHHHHHH
Q psy1544 585 GLGKTIQTIALITYLMEKKKVNGPFLIIV--PLSTLSNWSLEFE 626 (1331)
Q Consensus 585 GlGKTi~ai~li~~l~~~~~~~~p~LIV~--P~sll~qW~~E~~ 626 (1331)
|.|||-.+++++..+...+ ++|.||= |..-+..|..--.
T Consensus 12 GaGKTT~~~~LAs~la~~G---~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARG---ARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCcHHHHHHHHHHHHHHCC---CeEEEEeCCCCCcHHHHHHhcc
Confidence 8999999999988886654 3355554 7788889966543
No 384
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.18 E-value=3.3 Score=51.87 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=73.8
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEee
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS 957 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS 957 (1331)
..|||.+....++......|.+|||.+.....+..+.+.|+.. |..+..++|+++..+|.....+...++ ..| ++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~I-VVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--ILV-VIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CCE-EEC
Confidence 3589999998888888888999999999999888888888754 788999999999999988877765433 334 666
Q ss_pred ccccccccCCCCCCEEEEeCC
Q psy1544 958 TRAGGLGLNLQTADTVIIFDS 978 (1331)
Q Consensus 958 T~aggeGLNL~~ad~VI~~D~ 978 (1331)
|+.+- =+-+...+.||+-+-
T Consensus 83 Trsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred ChHHH-cCcccCCCEEEEECC
Confidence 66532 244667788887653
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.15 E-value=5.2 Score=48.99 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=25.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
...+++..+|+|||.++..++.++...+ ..+++|+-
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g---~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKG---LKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEecC
Confidence 3457889999999999988888776432 23555543
No 386
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.88 E-value=1.1 Score=56.83 Aligned_cols=166 Identities=14% Similarity=0.162 Sum_probs=95.0
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHH-HHHHHc--
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSL-EFERWA-- 629 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~-E~~k~~-- 629 (1331)
.....|||.+.+..+-... -....+.-..-+|||.+++.++.+.+... .+|+|+|.|+.-. ..|.. .|...+
T Consensus 14 ~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 4578999999888665311 23456777789999999888888877665 4789999999655 56653 344332
Q ss_pred -CCCcEEEecCC-hhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccC----CcchHHHHHHHH-
Q psy1544 630 -PSVNVVAYKGS-PHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMK----NHHCKLTHILNT- 702 (1331)
Q Consensus 630 -p~~~v~~~~g~-~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrik----n~~sk~~~~l~~- 702 (1331)
|.+.-.+.... ......+. .....+..+.++... ....|.....++||+||..++- +...-+..+..+
T Consensus 90 sp~l~~~~~~~~~~~~~~t~~-~k~f~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~ 164 (557)
T PF05876_consen 90 SPVLRRKLSPSKSRDSGNTIL-YKRFPGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRT 164 (557)
T ss_pred CHHHHHHhCchhhcccCCchh-heecCCCEEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHHHHHHHHH
Confidence 22221111100 00000000 011112223333322 2345677788999999999982 223333322222
Q ss_pred -hccCCceeeeccCCCCCChHHHHHHH
Q psy1544 703 -FYVAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 703 -~~~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
.+....++++..||.......++.+.
T Consensus 165 ~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 165 KTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred hhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 22456789999999876544444443
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=85.60 E-value=14 Score=44.18 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcC--CCcEEEecCChhHHHHHHHHhh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAP--SVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
++...|..+||.|||-+..=+++.+....+..+ +=||+--+-.---..+|..|+- ++.+.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~k-VaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~-------------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKK-VAIITTDTYRIGAVEQLKTYADIMGVPLEVVY-------------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcc-eEEEEeccchhhHHHHHHHHHHHhCCceEEec--------------
Confidence 444578899999999886666665552333233 4455443322223333333331 22333222
Q ss_pred ccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc-CCcchHHHHHHHHhc----cCCceeeeccCCCCCChHHHHHH
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM-KNHHCKLTHILNTFY----VAPHRLLLTGTPLQNKLPELWAL 727 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri-kn~~sk~~~~l~~~~----~~~~rllLTgTPlqN~l~EL~~l 727 (1331)
+..-+......+. +.|+|.||=+-|- ++. .++. -+..+. ....-|.||+|--..++.+++..
T Consensus 268 ---------~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~-~~i~-el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 268 ---------SPKELAEAIEALR--DCDVILVDTAGRSQYDK-EKIE-ELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred ---------CHHHHHHHHHHhh--cCCEEEEeCCCCCccCH-HHHH-HHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 2222222222222 3489999976553 222 2222 222222 23455889999888888888888
Q ss_pred HhhhcCC
Q psy1544 728 LNFLLPS 734 (1331)
Q Consensus 728 l~fL~p~ 734 (1331)
+.++...
T Consensus 335 f~~~~i~ 341 (407)
T COG1419 335 FSLFPID 341 (407)
T ss_pred hccCCcc
Confidence 8777443
No 388
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=85.18 E-value=0.42 Score=50.88 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=26.5
Q ss_pred ccCccEEEeeHHHHHhccC--cc--cccCccEEEEeCCcccCC
Q psy1544 653 ASKFNVLLTTYEYVIKDKG--PL--AKLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~--~l--~~~~~~~vIiDEaHrikn 691 (1331)
....+|||++|.++..... .+ ....-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4467999999999986532 11 122447999999999854
No 389
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.11 E-value=3.7 Score=54.04 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
..|.||.-+.|+|||..+-+++..+...
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4467999999999999988887776543
No 390
>KOG1985|consensus
Probab=85.07 E-value=5.6 Score=50.56 Aligned_cols=7 Identities=43% Similarity=0.581 Sum_probs=2.7
Q ss_pred eEEEEEe
Q psy1544 1001 VRVLRLM 1007 (1331)
Q Consensus 1001 V~V~rli 1007 (1331)
++|+.++
T Consensus 608 IRV~T~~ 614 (887)
T KOG1985|consen 608 IRVHTLC 614 (887)
T ss_pred EEEEEee
Confidence 3443333
No 391
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.93 E-value=4.1 Score=48.91 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHHHH-hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 562 IKGLEWMVSL-FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 562 ~~gv~~l~~~-~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
..+++.++.- +..+.-.+|+-++|.|||..++.++..+... .+++|+|.-.....|......++
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rl 132 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRL 132 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHc
Confidence 3555555520 1122234788999999999998888776543 34688887665555655444443
No 392
>PRK05580 primosome assembly protein PriA; Validated
Probab=84.82 E-value=4.6 Score=52.58 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=74.4
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
.|||......++......|.++||.+.....+..+...|... |..+..++|+++..+|.........++ .. ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~--~~-IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE--AK-VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC--CC-EEEec
Confidence 478999888877777777889999999999988888888654 889999999999999988888876443 33 46777
Q ss_pred cccccccCCCCCCEEEEeCCC
Q psy1544 959 RAGGLGLNLQTADTVIIFDSD 979 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D~~ 979 (1331)
+.+- =+.+...+.||+-+-+
T Consensus 249 rsal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred cHHh-cccccCCCEEEEECCC
Confidence 6432 3556778888876643
No 393
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=84.42 E-value=2.1 Score=51.37 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHH
Q psy1544 560 YQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 560 yQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~ 598 (1331)
.+...+..++.+..++.|.|+..+.|+|||..+.++..+
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 344555666566778999999999999999888877665
No 394
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=84.33 E-value=3.5 Score=51.35 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
..+.+|.-++|+|||..+-+++..+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhc
Confidence 45678999999999999888877663
No 395
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.26 E-value=5.9 Score=46.27 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
+.|.+|...+|+|||..+.+++..+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~ 183 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK 183 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3455788899999999999999988754
No 396
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.21 E-value=5.6 Score=42.79 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
-||..+.|+|||..+..++..+...
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4789999999999999998888754
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.18 E-value=4.6 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=17.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~ 598 (1331)
..||..+.|+|||..|-.+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999887776554
No 398
>PTZ00293 thymidine kinase; Provisional
Probab=83.99 E-value=5.8 Score=43.48 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=25.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
++..+||+|||...|-.+..+... +.+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 678899999998777766655443 34588888864
No 399
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.98 E-value=13 Score=43.84 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l 599 (1331)
.+.+|..+.|+|||..+-+++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 356899999999999888777655
No 400
>PRK09183 transposase/IS protein; Provisional
Probab=83.97 E-value=3.7 Score=46.82 Aligned_cols=28 Identities=36% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.+.+.+|..++|+|||..+.++...+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4677888999999999998888665543
No 401
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.91 E-value=9.6 Score=42.59 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=30.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN 620 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q 620 (1331)
+.-.+|..+.|+|||..++.++..+...+ .+++.|+......+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~~~~~ 66 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQLTTTE 66 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCCCHHH
Confidence 44568899999999999988888765432 44777875544433
No 402
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.91 E-value=14 Score=44.82 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=64.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC--ccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL--STLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASK 655 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~--sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~ 655 (1331)
.++.-+.|+|||.++.-++..+.... +..+++|.=- .....| .+..|+....+-.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~~----------------- 284 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAIE--QLKRYADTMGMPFYP----------------- 284 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHHH--HHHHHHHhcCCCeee-----------------
Confidence 45778999999999988887653322 1234444422 223444 344443221111110
Q ss_pred ccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc-------cCCceeeeccCCCCCChHHHHHHH
Q psy1544 656 FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-------VAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 656 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-------~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
...+..-...+....+++||||=+-+.-.....+ ..+..+. .....|+|+||--+..+.+....+
T Consensus 285 -------~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l-~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 285 -------VKDIKKFKETLARDGSELILIDTAGYSHRNLEQL-ERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred -------hHHHHHHHHHHHhCCCCEEEEeCCCCCccCHHHH-HHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 0001111111122357999999877663333222 2222211 123458899997776777766655
Q ss_pred hhhcC
Q psy1544 729 NFLLP 733 (1331)
Q Consensus 729 ~fL~p 733 (1331)
..+..
T Consensus 357 ~~~~~ 361 (432)
T PRK12724 357 ESLNY 361 (432)
T ss_pred cCCCC
Confidence 55533
No 403
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.66 E-value=4.2 Score=54.42 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcC--CCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFNN--NLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~--~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
|..-|.+++..+.. ..+.||.-+.|+|||..+-+++..+..
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 33457777765433 346789999999999998887766543
No 404
>PHA02244 ATPase-like protein
Probab=83.64 E-value=6.4 Score=46.76 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 570 SLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 570 ~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
.....+.+.+|..++|+|||..|-++...+ ..|++.|.
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In 151 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMN 151 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 334468889999999999999887776653 34555553
No 405
>PHA00012 I assembly protein
Probab=83.51 E-value=3.2 Score=48.05 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=24.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHH
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLS 619 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~ 619 (1331)
++..-.|+|||+.|++-|...+..+ ..|++...+..
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G-----r~VaTNidL~l 40 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG-----CIVATNLNLRL 40 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC-----CEEEeCCccch
Confidence 4455689999999998666655543 25666655443
No 406
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.48 E-value=12 Score=42.97 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=63.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC----ccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHh
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL----STLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQM 651 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~----sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~ 651 (1331)
....+....|+|||..+..++..+... ...+.+|.-. ..+.||....... ++.+...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~--~~~~~~~-------------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTI--GFEVIAV-------------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhc--CceEEec--------------
Confidence 445677889999998877776665432 2335555542 2445565333221 1222111
Q ss_pred hccCccEEEeeHHHHHhccCcccc-cCccEEEEeCCcccCCcchHHH---HHHHHhccCCceeeeccCCCCCChHHHHHH
Q psy1544 652 KASKFNVLLTTYEYVIKDKGPLAK-LHWKYMIIDEGHRMKNHHCKLT---HILNTFYVAPHRLLLTGTPLQNKLPELWAL 727 (1331)
Q Consensus 652 ~~~~~~VvItTye~l~~~~~~l~~-~~~~~vIiDEaHrikn~~sk~~---~~l~~~~~~~~rllLTgTPlqN~l~EL~~l 727 (1331)
.+...+......+.. .++++||||-+=+.-.....+. ..+.........|.|+||--.+...+....
T Consensus 137 ---------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 137 ---------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred ---------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 111222111111221 2579999999887643332222 222222122234678998766666555554
Q ss_pred Hhh
Q psy1544 728 LNF 730 (1331)
Q Consensus 728 l~f 730 (1331)
++.
T Consensus 208 f~~ 210 (270)
T PRK06731 208 FKD 210 (270)
T ss_pred hCC
Confidence 443
No 407
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.27 E-value=6.8 Score=45.95 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|..++..+...+.++. .-++..+.|+||+..|.+++..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 6666666666665553 348899999999999999999987654
No 408
>KOG1984|consensus
Probab=83.25 E-value=8.9 Score=49.09 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=4.5
Q ss_pred HHHHHHhcCC
Q psy1544 842 IVQLRKLCNH 851 (1331)
Q Consensus 842 l~~Lrk~~~h 851 (1331)
|...|+.|..
T Consensus 790 L~~YRk~cas 799 (1007)
T KOG1984|consen 790 LASYRKNCAS 799 (1007)
T ss_pred HHHHHHhhcC
Confidence 3444554443
No 409
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.12 E-value=11 Score=48.45 Aligned_cols=9 Identities=44% Similarity=0.530 Sum_probs=4.8
Q ss_pred hhHHHHHHH
Q psy1544 53 NLTALQRAI 61 (1331)
Q Consensus 53 ~~~~l~~~~ 61 (1331)
.+..+|..+
T Consensus 440 ~l~~~w~~~ 448 (620)
T PRK14948 440 NLEELWQQI 448 (620)
T ss_pred CHHHHHHHH
Confidence 455555544
No 410
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=82.88 E-value=7.6 Score=52.55 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=72.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcE
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNV 634 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v 634 (1331)
..|.+-|.++|..+. ..+.-++|...-|+|||.+.-+++..+ +.. +..++.++|+.--.. .+..-+ ++..
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~--G~~V~g~ApTgkAA~---~L~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAW-EAA--GYRVVGGALAGKAAE---GLEKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHH-HHc--CCeEEEEcCcHHHHH---HHHHhh-CCCe
Confidence 479999999998764 234446778889999998766655433 332 345788888754432 222211 1111
Q ss_pred EEecCChhHHHHHHHHhhccCccEEEeeHHHH-Hh---ccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 635 VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYV-IK---DKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 635 ~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l-~~---~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
. |...+ .. ....+. .-++||||||..+.... +...+........+|
T Consensus 450 ~--------------------------TIas~ll~~~~~~~~l~--~~~vlVIDEAsMv~~~~--m~~Ll~~~~~~garv 499 (1102)
T PRK13826 450 R--------------------------TLSSWELRWNQGRDQLD--NKTVFVLDEAGMVASRQ--MALFVEAVTRAGAKL 499 (1102)
T ss_pred e--------------------------eHHHHHhhhccCccCCC--CCcEEEEECcccCCHHH--HHHHHHHHHhcCCEE
Confidence 1 11111 00 011111 24799999999875443 233444433456789
Q ss_pred eeccCCCCCC
Q psy1544 711 LLTGTPLQNK 720 (1331)
Q Consensus 711 lLTgTPlqN~ 720 (1331)
+|-|=|.|..
T Consensus 500 VLVGD~~QL~ 509 (1102)
T PRK13826 500 VLVGDPEQLQ 509 (1102)
T ss_pred EEECCHHHcC
Confidence 9999876543
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.72 E-value=3.9 Score=47.38 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=66.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccE
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNV 658 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~V 658 (1331)
++.--.|+|||-+..=++.++...+ ..+|+.+--.-..--.++++-|+-...+-++.+...... .-
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~Dp----------Aa- 208 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADP----------AA- 208 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC---CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCc----------HH-
Confidence 4567789999987777777665443 234554444333556666777765444443332110000 00
Q ss_pred EEeeHHHHHhccCcccccCccEEEEeCCcccCCcch------HHHHHHHHhc-cCCceeee--ccCCCCCChHH
Q psy1544 659 LLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC------KLTHILNTFY-VAPHRLLL--TGTPLQNKLPE 723 (1331)
Q Consensus 659 vItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s------k~~~~l~~~~-~~~~rllL--TgTPlqN~l~E 723 (1331)
.-|+.+.... .-++|+||||=|-|+-|... ++.+.+.... .++|.++| =||--||.+..
T Consensus 209 --VafDAi~~Ak----ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 209 --VAFDAIQAAK----ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred --HHHHHHHHHH----HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 1122222211 12689999999999977653 2223332221 23454444 48877776543
No 412
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=82.62 E-value=5.2 Score=52.16 Aligned_cols=95 Identities=19% Similarity=0.186 Sum_probs=68.8
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHH----HHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEE
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILED----YFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFV 955 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~----~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~L 955 (1331)
.|||..+..-.+-.....|.+++|.+.....+..+.. ++...|+++..++|+++..+|..++.....++ +.| +
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~I-v 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADI-V 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCE-E
Confidence 4888876554444444678899999999887665544 45555899999999999999999999997543 445 4
Q ss_pred eecc-ccccccCCCCCCEEEEeC
Q psy1544 956 LSTR-AGGLGLNLQTADTVIIFD 977 (1331)
Q Consensus 956 lST~-aggeGLNL~~ad~VI~~D 977 (1331)
++|. ....++.+.....||+=+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EchHHHhcccchhcccceEEEec
Confidence 5554 445567788888877633
No 413
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.20 E-value=1.1 Score=57.48 Aligned_cols=11 Identities=18% Similarity=0.740 Sum_probs=7.9
Q ss_pred ccchhhHHHHh
Q psy1544 1149 TDSLTEKEWLK 1159 (1331)
Q Consensus 1149 ~d~lte~e~l~ 1159 (1331)
--+++++||++
T Consensus 1997 WP~f~D~qWi~ 2007 (2365)
T COG5178 1997 WPGFSDSQWIK 2007 (2365)
T ss_pred CCCCCHHHHhh
Confidence 46778888864
No 414
>KOG4592|consensus
Probab=82.02 E-value=11 Score=46.50 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=21.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhccCCCCCChhhhh
Q psy1544 88 IKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAM 122 (1331)
Q Consensus 88 ~~~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~ 122 (1331)
++++|- -|++|+-.|++.+......+.+|..+++
T Consensus 143 ~~Qp~e-~qqqq~qqQl~N~~~~p~P~~lpq~pqq 176 (728)
T KOG4592|consen 143 NPQPFE-KQQQQSQQQLGNRQQVPTPTMLPQQPQQ 176 (728)
T ss_pred CCCcch-HHHHHHHHHHhccccCCCCCCccccccc
Confidence 344444 6777888888877766666666655543
No 415
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=81.84 E-value=5.6 Score=49.13 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+.++...+..+. . .|+..+.|+|||..|..++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5666677766665443 2 3789999999999999999888654
No 416
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=81.80 E-value=7 Score=48.76 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcCCC------ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCc-EEEEeCCccH-HHHHHHHHHHcC
Q psy1544 559 EYQIKGLEWMVSLFNNNL------NGILADEMGLGKTIQTIALITYLMEKKKVNGP-FLIIVPLSTL-SNWSLEFERWAP 630 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~------~gILADemGlGKTi~ai~li~~l~~~~~~~~p-~LIV~P~sll-~qW~~E~~k~~p 630 (1331)
|+|...+..++-. .... .++|.-.=|-|||..+.+++.+.+...+..++ ++++++..-. ..-...+....-
T Consensus 1 PwQ~fi~~~i~G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6788777766643 2111 24666677999999888777766654443343 5555555322 222233333321
Q ss_pred CCcEEEecCChhHHHHHHHHh-hccCccEEEee----HHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHh
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQM-KASKFNVLLTT----YEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTF 703 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~-~~~~~~VvItT----ye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~ 703 (1331)
. ++..++...... ....-.|.... +..+..+...+...+.+++|+||+|.+++.. .+.++..-
T Consensus 80 ~--------~~~l~~~~~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~--~~~~l~~g 147 (477)
T PF03354_consen 80 A--------SPELRKRKKPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE--LYDALESG 147 (477)
T ss_pred h--------ChhhccchhhhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH--HHHHHHhh
Confidence 1 111110000000 01111222111 1122234555666788999999999998743 44455443
No 417
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=81.63 E-value=1.8e+02 Score=38.88 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=19.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l 599 (1331)
..+|.-+.|+|||..|-+++..+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999998888777665
No 418
>KOG0740|consensus
Probab=81.56 E-value=2.2 Score=51.40 Aligned_cols=46 Identities=28% Similarity=0.240 Sum_probs=36.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
+-+|+-+.|.|||+.+.+++... ...+.-|.|.++...|..|-++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~------~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATES------GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhh------cceEeeccHHHhhhhccChHHHH
Confidence 34789999999999998888765 23477888889999998776553
No 419
>KOG2893|consensus
Probab=81.40 E-value=21 Score=38.64 Aligned_cols=31 Identities=10% Similarity=-0.099 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy1544 200 LIILQERENRVALNIERRIEELNGSLTSTLP 230 (1331)
Q Consensus 200 ~~~~~~re~~i~~~i~~r~~el~~~l~~~~~ 230 (1331)
++.++.-+...+--...|+.++...-|..-+
T Consensus 238 ~~~~q~~~~~~qg~~~~~fr~~~r~~p~~~s 268 (341)
T KOG2893|consen 238 HQDYQAPDDYNQGGYDDRFREGDRGGPPGGS 268 (341)
T ss_pred ccccccchhhhcCCccccccccccCCCCCCC
Confidence 3445555666666677788887743454433
No 420
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=81.39 E-value=2 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=16.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~ 598 (1331)
..||..+.|+|||-.|-.++..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 4799999999999766555443
No 421
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=81.32 E-value=7.7 Score=47.94 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=76.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCc------eEEecCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEeCCccH-HHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLN------GILADEMGLGKTIQTIALITY--LMEKKKVNGPFLIIVPLSTL-SNWSLE 624 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~------gILADemGlGKTi~ai~li~~--l~~~~~~~~p~LIV~P~sll-~qW~~E 624 (1331)
...|-|||...+.-+.-+++.+.+ ++|-.+=|=|||-.+.+++.+ ++.. .....++|++|+--. .+-..+
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHH
Confidence 457999999999988877766655 377777899999775544443 4444 333448888887433 333333
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHH-------HHHhccCcccccCccEEEEeCCcccCCcchHHH
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYE-------YVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLT 697 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye-------~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~ 697 (1331)
+..-.-... ..+.. ..... +-..+++. .+..+...+...+..++||||-|...+.. ..+
T Consensus 138 ar~mv~~~~--------~l~~~----~~~q~-~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~ 203 (546)
T COG4626 138 ARDMVKRDD--------DLRDL----CNVQT-HSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMY 203 (546)
T ss_pred HHHHHHhCc--------chhhh----hcccc-ceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHH
Confidence 332221111 11110 00011 11112221 22344566777789999999999998876 333
Q ss_pred HHH
Q psy1544 698 HIL 700 (1331)
Q Consensus 698 ~~l 700 (1331)
..+
T Consensus 204 ~~~ 206 (546)
T COG4626 204 SEA 206 (546)
T ss_pred HHH
Confidence 333
No 422
>PRK04132 replication factor C small subunit; Provisional
Probab=81.32 E-value=6.1 Score=52.00 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=30.9
Q ss_pred CccEEEEeCCcccCCcc-hHHHHHHHHhccCCceeeeccCCCCCChHHHHHHH
Q psy1544 677 HWKYMIIDEGHRMKNHH-CKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 677 ~~~~vIiDEaHrikn~~-sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
++.+|||||||+|-... ..+.+.+.. +....+++|+.++...-+.-|.+-.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEe-p~~~~~FILi~N~~~kIi~tIrSRC 681 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEM-FSSNVRFILSCNYSSKIIEPIQSRC 681 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhC-CCCCeEEEEEeCChhhCchHHhhhc
Confidence 57899999999995322 222233322 2356678888887655555554433
No 423
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=81.18 E-value=1.6 Score=46.53 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
++.-+|++|||...|..+..+... +..++|+-|.-
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~---~~~v~~~kp~~ 39 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA---GKKVLVFKPAI 39 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEEEST
T ss_pred EEECCcCChhHHHHHHHHHHHHhC---CCeEEEEEecc
Confidence 456789999999888877666443 34578887753
No 424
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.15 E-value=2 Score=46.27 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=68.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH-HHHH--HHHcCCCcEEEecCChhHHHHHHHHh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW-SLEF--ERWAPSVNVVAYKGSPHLRKTLQAQM 651 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW-~~E~--~k~~p~~~v~~~~g~~~~r~~~~~~~ 651 (1331)
....++....|.|||-.|++++......+ .+++||==.. ..| ..|. -+..+.+.+..+..+.....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~g~~~~~~~------ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIK--GAWSTGERNLLEFGGGVEFHVMGTGFTWET------ 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEec--CCCccCHHHHHhcCCCcEEEECCCCCcccC------
Confidence 45567888999999999999988776554 3466664221 112 1122 12223333332221100000
Q ss_pred hccCccEEEeeH-HHHHhccCcccccCccEEEEeCCcccCCcc----hHHHHHHHHhccCCceeeeccCCCCCChHHHHH
Q psy1544 652 KASKFNVLLTTY-EYVIKDKGPLAKLHWKYMIIDEGHRMKNHH----CKLTHILNTFYVAPHRLLLTGTPLQNKLPELWA 726 (1331)
Q Consensus 652 ~~~~~~VvItTy-e~l~~~~~~l~~~~~~~vIiDEaHrikn~~----sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ 726 (1331)
.....-+... ..+......+..-.|++||+||.-..-+.+ ..+...|... ...--|+|||- +-..+|..
T Consensus 91 --~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVlTGR---~~p~~Lie 164 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR-PGMQHVVITGR---GAPRELIE 164 (191)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC-CCCCEEEEECC---CCCHHHHH
Confidence 0000000000 111112233445689999999987765543 2333444321 23346999997 44455555
Q ss_pred HHhhh
Q psy1544 727 LLNFL 731 (1331)
Q Consensus 727 ll~fL 731 (1331)
+.+++
T Consensus 165 ~ADlV 169 (191)
T PRK05986 165 AADLV 169 (191)
T ss_pred hCchh
Confidence 44444
No 425
>KOG1144|consensus
Probab=81.15 E-value=52 Score=41.96 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=58.3
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEE----eCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLII----VPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTL 647 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV----~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~ 647 (1331)
+.....|||++ +-+|||-..-.+=......+..+|-+=.| .|..-+.+...++.++...
T Consensus 473 lRSPIcCilGH-VDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~---------------- 535 (1064)
T KOG1144|consen 473 LRSPICCILGH-VDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKK---------------- 535 (1064)
T ss_pred cCCceEEEeec-ccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhh----------------
Confidence 44566789888 89999964211111111112222222222 2555555666666554310
Q ss_pred HHHhhccCccEEEee--HHHHHhccCccc-ccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeee
Q psy1544 648 QAQMKASKFNVLLTT--YEYVIKDKGPLA-KLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLL 712 (1331)
Q Consensus 648 ~~~~~~~~~~VvItT--ye~l~~~~~~l~-~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllL 712 (1331)
.....++ .+|-| ++.|.+.+...+ ..++.++|||=.|-+--.+-.....|+.- ++++++.|
T Consensus 536 --~~kvPg~-lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r-ktpFivAL 599 (1064)
T KOG1144|consen 536 --RLKVPGL-LVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-KTPFIVAL 599 (1064)
T ss_pred --hcCCCee-EEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc-CCCeEEee
Confidence 0011111 12222 344444433322 33678999998887755444334444432 56666665
No 426
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=80.91 E-value=1.3 Score=57.04 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHHHhCHHHHHHHHHHhHHH
Q psy1544 1074 QMLARSEEEFQTYQRIDAER 1093 (1331)
Q Consensus 1074 ~~l~r~~~e~~~~~~~d~~~ 1093 (1331)
+.+.+=+-||..-+++-.|-
T Consensus 1399 rYis~We~EF~dSqRVWaEY 1418 (2365)
T COG5178 1399 RYISRWEYEFEDSQRVWAEY 1418 (2365)
T ss_pred HhhhhhhhhhhhHHHHHHHH
Confidence 44456666666555555543
No 427
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.91 E-value=9 Score=45.59 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCC---ceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 561 QIKGLEWMVSLFNNNL---NGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~---~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
|...+..+.....++. ..||..+.|+|||..+-.++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444444444443333 23789999999999998888877644
No 428
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=80.90 E-value=4.9 Score=50.07 Aligned_cols=131 Identities=15% Similarity=0.234 Sum_probs=68.6
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-----HHHHHHHHHHcCCCcEEEecCChhHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-----SNWSLEFERWAPSVNVVAYKGSPHLRKT 646 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-----~qW~~E~~k~~p~~~v~~~~g~~~~r~~ 646 (1331)
+.+.-.+.|. +=--|||...+.+|..++..-..- .+..++.-.-+ ......+.+|+|.-.++.-+|+.-.-.
T Consensus 200 FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI-~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s- 276 (668)
T PHA03372 200 FKQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGI-SIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISID- 276 (668)
T ss_pred hhccceEEEe-cccCCceehHHHHHHHHHHhhcCc-eEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEe-
Confidence 3344444443 457799999999998887743322 36777765433 334455678998765533322100000
Q ss_pred HHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc-cCCceeeeccC
Q psy1544 647 LQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-VAPHRLLLTGT 715 (1331)
Q Consensus 647 ~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-~~~~rllLTgT 715 (1331)
....+..++..| ......+....|++++|||||-++...- ...|-.+. +....|.+|.|
T Consensus 277 ----~pg~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~--~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 277 ----HRGAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAF--NTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ----cCCCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHH--HHhhhhhcccCceEEEEeCC
Confidence 000000111111 0123345566899999999999865431 12222222 34455666655
No 429
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=80.65 E-value=6.2 Score=45.59 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
+...+|+..+|+|||.++..++.++....+ ...+.||.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEEC
Confidence 334467789999999999888887765422 123555553
No 430
>CHL00206 ycf2 Ycf2; Provisional
Probab=80.57 E-value=5.1 Score=56.05 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=30.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
..|.+|..++|+|||+.|=+++... .-|++-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 4567899999999999887777643 4567767666666665
No 431
>KOG3837|consensus
Probab=80.46 E-value=23 Score=41.84 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=11.2
Q ss_pred HHHHHH-HhhhccCCCCCC
Q psy1544 100 LRFQIM-AYRLLARNQPLT 117 (1331)
Q Consensus 100 LraQi~-ayk~l~~~~p~p 117 (1331)
+-.|++ +-++++++.++.
T Consensus 133 vakqfd~vIka~~rG~~Vd 151 (523)
T KOG3837|consen 133 VAKQFDAVIKALSRGEPVD 151 (523)
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 334443 456788888765
No 432
>CHL00176 ftsH cell division protein; Validated
Probab=80.37 E-value=11 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=19.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~ 598 (1331)
..+.+|.-+.|+|||..|=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446799999999999988777654
No 433
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.35 E-value=21 Score=43.52 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=62.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcC--CCcEEEecCChhHHHHHHHHhh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAP--SVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
+....|.-.+|.|||-+..-++..+....+.....+|.+...-+ .....+..|+. ++.+.......+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri-galEQL~~~a~ilGvp~~~v~~~~dl~~a------ 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI-GGHEQLRIYGKLLGVSVRSIKDIADLQLM------ 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch-hHHHHHHHHHHHcCCceecCCCHHHHHHH------
Confidence 33446788899999987665655443332222223444444333 33333444332 2222222211111100
Q ss_pred ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc----cCCceeeeccCCCCCChHHHHHHH
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY----VAPHRLLLTGTPLQNKLPELWALL 728 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~----~~~~rllLTgTPlqN~l~EL~~ll 728 (1331)
...+ -.+++|+||.+=+..+.. .+...+..+. .....|+|+||--.+.+.++...+
T Consensus 264 -----------------l~~l--~~~d~VLIDTaGrsqrd~-~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 264 -----------------LHEL--RGKHMVLIDTVGMSQRDQ-MLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred -----------------HHHh--cCCCEEEecCCCCCcchH-HHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 0001 146889999875443322 2233333332 224457899997667676666555
Q ss_pred hhh
Q psy1544 729 NFL 731 (1331)
Q Consensus 729 ~fL 731 (1331)
..+
T Consensus 324 ~~~ 326 (420)
T PRK14721 324 QGH 326 (420)
T ss_pred cCC
Confidence 544
No 434
>KOG1029|consensus
Probab=80.24 E-value=1.9e+02 Score=37.21 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=13.9
Q ss_pred ccCcccccCccEEEEeCCccc
Q psy1544 669 DKGPLAKLHWKYMIIDEGHRM 689 (1331)
Q Consensus 669 ~~~~l~~~~~~~vIiDEaHri 689 (1331)
....+.-..=|+|||+|.|..
T Consensus 706 s~dEisf~pGDII~V~esq~a 726 (1118)
T KOG1029|consen 706 SHDEISFEPGDIIIVFESQAA 726 (1118)
T ss_pred CcccccccCCCEEEEehhccC
Confidence 344444445589999998875
No 435
>KOG0921|consensus
Probab=80.16 E-value=10 Score=48.71 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=66.4
Q ss_pred HhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC-CCcEEEEe-CCccHHH-----HHHHHHHHcCCCcEEEecCChhH
Q psy1544 571 LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV-NGPFLIIV-PLSTLSN-----WSLEFERWAPSVNVVAYKGSPHL 643 (1331)
Q Consensus 571 ~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~-~~p~LIV~-P~sll~q-----W~~E~~k~~p~~~v~~~~g~~~~ 643 (1331)
..+.+.-+|+--++|+|||.+...+|..-+..... .-.-.+|| |.....+ ..+|=..-. ..++.|.-..
T Consensus 389 ~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~--g~tvgy~vRf-- 464 (1282)
T KOG0921|consen 389 AVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEV--GETCGYNVRF-- 464 (1282)
T ss_pred HHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhh--cccccccccc--
Confidence 33456667888889999999877766654433222 11223444 3333333 222211111 1111111100
Q ss_pred HHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHh---ccCCceeeeccCC
Q psy1544 644 RKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTF---YVAPHRLLLTGTP 716 (1331)
Q Consensus 644 r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~---~~~~~rllLTgTP 716 (1331)
.+......--++.+|-+.+.+.... -.....++|+||.|..--.+--+...++.+ ++.-+.+++++|-
T Consensus 465 ----~Sa~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 465 ----DSATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred ----cccccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 0001111223666777666553221 112457999999997644443333444333 2344557889983
No 436
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=80.16 E-value=4.8 Score=47.65 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=16.5
Q ss_pred ceEEecCCCCCHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALIT 597 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~ 597 (1331)
+.||..+.|+|||-.|-.+..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHH
Confidence 459999999999977655544
No 437
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.14 E-value=16 Score=45.27 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=19.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
.|.-.+|.|||.++.-++.++....
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~ 284 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRH 284 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhc
Confidence 5778999999998888777665443
No 438
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=79.81 E-value=5.3 Score=52.31 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
..+.||.-+.|+|||..+-++...+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 457799999999999998777765543
No 439
>PRK06620 hypothetical protein; Validated
Probab=79.69 E-value=7.1 Score=43.14 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=53.0
Q ss_pred EEEeCC-ccHHHHHHHHHH-Hc--CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeC
Q psy1544 610 LIIVPL-STLSNWSLEFER-WA--PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDE 685 (1331)
Q Consensus 610 LIV~P~-sll~qW~~E~~k-~~--p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDE 685 (1331)
+||.+. .....|..++.. |. |....++++|....-|+..........+..+++...... ..+. ..++++|||
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~--~~~~--~~d~lliDd 93 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE--EILE--KYNAFIIED 93 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch--hHHh--cCCEEEEec
Confidence 677774 334566665554 43 212334555544433332222222233344444332211 1111 348999999
Q ss_pred CcccCCcchHHHHHHHHhccCCceeeeccCCC
Q psy1544 686 GHRMKNHHCKLTHILNTFYVAPHRLLLTGTPL 717 (1331)
Q Consensus 686 aHrikn~~sk~~~~l~~~~~~~~rllLTgTPl 717 (1331)
+|++. ...++..++.+....+.+++|||--
T Consensus 94 i~~~~--~~~lf~l~N~~~e~g~~ilits~~~ 123 (214)
T PRK06620 94 IENWQ--EPALLHIFNIINEKQKYLLLTSSDK 123 (214)
T ss_pred cccch--HHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 99762 2345666666655667899999843
No 440
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.64 E-value=7.1 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=20.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|..+.|+|||..+-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4457899999999999887776644
No 441
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=79.47 E-value=5.4 Score=42.84 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=55.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccE
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNV 658 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~V 658 (1331)
++..+|++|||..-|-.+..+... +.+++|..|..--.-- ...+..-.|.. ..-+
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD~R~~---------~~~V~Sr~G~~-------------~~A~ 62 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAIDTRYG---------VGKVSSRIGLS-------------SEAV 62 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHc---CCeEEEEecccccccc---------cceeeeccCCc-------------ccce
Confidence 567899999998665555544433 3458888886322111 11111111111 1122
Q ss_pred EEeeHHHHHhccCccc-ccCccEEEEeCCcccCCcchHHHHHHHHhccC-CceeeeccC
Q psy1544 659 LLTTYEYVIKDKGPLA-KLHWKYMIIDEGHRMKNHHCKLTHILNTFYVA-PHRLLLTGT 715 (1331)
Q Consensus 659 vItTye~l~~~~~~l~-~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~-~~rllLTgT 715 (1331)
+|-+-.-+........ +...++|+|||||-+... +...+..+... ..++++.|.
T Consensus 63 ~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~---~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 63 VIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEE---LVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ecCChHHHHHHHHhcccCCCcCEEEEehhHhCCHH---HHHHHHHHHhhcCCEEEEecc
Confidence 3333333333222221 112689999999988653 33344444333 456666664
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=79.40 E-value=15 Score=38.77 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
.++..+.|+|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3577889999999998888777554
No 443
>PRK09752 adhesin; Provisional
Probab=79.30 E-value=1.7 Score=57.35 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.4
Q ss_pred EEEeCC
Q psy1544 610 LIIVPL 615 (1331)
Q Consensus 610 LIV~P~ 615 (1331)
++|-|.
T Consensus 1125 w~LEPQ 1130 (1250)
T PRK09752 1125 VVIEPQ 1130 (1250)
T ss_pred EEEeee
Confidence 334443
No 444
>PRK09087 hypothetical protein; Validated
Probab=79.15 E-value=8.4 Score=42.97 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.2
Q ss_pred cEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccC
Q psy1544 679 KYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 679 ~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgT 715 (1331)
++|+||+.|.+......++..++.++.....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 5899999999865556677788777666777888887
No 445
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=79.15 E-value=1.1 Score=47.80 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=46.1
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccEE
Q psy1544 581 ADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVL 659 (1331)
Q Consensus 581 ADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~Vv 659 (1331)
-.+=|-|||.....++..++..+. ..++|.+|...- ..-..-+.+ .+...-|......+.............|-
T Consensus 3 tA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 77 (177)
T PF05127_consen 3 TADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEK---GLKALGYKEEKKKRIGQIIKLRFNKQRIE 77 (177)
T ss_dssp EE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHh---hccccccccccccccccccccccccceEE
Confidence 344799999765555554444332 457888887432 221111111 11212221111000000001112234444
Q ss_pred EeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCC
Q psy1544 660 LTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 660 ItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
...++.+.... ...|+||||||=-+-- ..|..+.....+++||.|-
T Consensus 78 f~~Pd~l~~~~-----~~~DlliVDEAAaIp~------p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 78 FVAPDELLAEK-----PQADLLIVDEAAAIPL------PLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp B--HHHHCCT---------SCEEECTGGGS-H------HHHHHHHCCSSEEEEEEEB
T ss_pred EECCHHHHhCc-----CCCCEEEEechhcCCH------HHHHHHHhhCCEEEEEeec
Confidence 44444443322 1469999999976532 2344444567788998883
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=79.12 E-value=13 Score=42.57 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=34.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFE 626 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 626 (1331)
.+.-.+|+..+|+|||..++.++..+.... ..+++++.-.....++...+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcccCHHHHHHHHH
Confidence 344568999999999999998887765442 345788775544444444443
No 447
>KOG1029|consensus
Probab=78.96 E-value=2e+02 Score=36.90 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=6.1
Q ss_pred ccCCCCCCEEEEe
Q psy1544 964 GLNLQTADTVIIF 976 (1331)
Q Consensus 964 GLNL~~ad~VI~~ 976 (1331)
||.++.+|.+...
T Consensus 922 dlt~~egd~iLvt 934 (1118)
T KOG1029|consen 922 DLTFHEGDEILVT 934 (1118)
T ss_pred CccccccceEEEe
Confidence 4444445554443
No 448
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=78.92 E-value=13 Score=43.87 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCce-EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNG-ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~g-ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
++|+|...-+.+.....+-..+ |+..+.|+|||..|..++..++...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4788888887777665433333 6889999999999999999887643
No 449
>CHL00095 clpC Clp protease ATP binding subunit
Probab=78.80 E-value=5.8 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
..+.||..+.|+|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44679999999999999877776654
No 450
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=78.27 E-value=11 Score=40.45 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKK-------KVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~-------~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
+.-++++.+.|+|||..++.++..+.... ...+++|+|..-....++...+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 44468899999999999999988877421 13457899988877777777777665
No 451
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=78.15 E-value=12 Score=52.63 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh-cCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK-KKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~-~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
..|.+-|.+++..++.. .+.-.+|.-..|+|||.+.-+++..+... ......++.++|+.--..-..+. ++.
T Consensus 834 ~~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~-----Gi~ 906 (1623)
T PRK14712 834 EKLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSA-----GVD 906 (1623)
T ss_pred cccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHh-----Cch
Confidence 37899999999877751 23456788889999998865554433221 11223477788975443222221 110
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
-..+...+.... .+. ..........++||||||-.+.+... ...+..+.....+++|-
T Consensus 907 ----------A~TIasfL~~~~------~~~----~~~~~~~~~~~llIVDEASMV~~~~m--~~ll~~~~~~garvVLV 964 (1623)
T PRK14712 907 ----------AQTLASFLHDTQ------LQQ----RSGETPDFSNTLFLLDESSMVGNTDM--ARAYALIAAGGGRAVAS 964 (1623)
T ss_pred ----------HhhHHHHhcccc------chh----hcccCCCCCCcEEEEEccccccHHHH--HHHHHhhhhCCCEEEEE
Confidence 011111111000 000 00000112458999999998876543 22333222334688888
Q ss_pred cCCCCCC
Q psy1544 714 GTPLQNK 720 (1331)
Q Consensus 714 gTPlqN~ 720 (1331)
|=+-|..
T Consensus 965 GD~~QL~ 971 (1623)
T PRK14712 965 GDTDQLQ 971 (1623)
T ss_pred cchhhcC
Confidence 8775543
No 452
>PRK11054 helD DNA helicase IV; Provisional
Probab=78.09 E-value=5.7 Score=51.54 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC-CCcEEEEeCCccHHHHHHH-HHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV-NGPFLIIVPLSTLSNWSLE-FERW 628 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~-~~p~LIV~P~sll~qW~~E-~~k~ 628 (1331)
..|.+-|.++|..- ..+.++....|+|||.+.++-+.+|+..... ...+|+|+.+....+...+ +...
T Consensus 195 ~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 36999999998621 2344555669999999999999999876532 3469999998877665543 4443
No 453
>PRK08760 replicative DNA helicase; Provisional
Probab=78.06 E-value=15 Score=45.65 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 564 GLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 564 gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
.+..+..-+..+.-.|||..+|+|||..++.++....... +.+++++..--...+|...+....
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccCCHHHHHHHHHHhh
Confidence 3333333233344458999999999999999887764332 346888888777788888776554
No 454
>PRK06904 replicative DNA helicase; Validated
Probab=78.02 E-value=19 Score=44.81 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
..+..+..-+..+.=.|||.-+|+|||.-++.++...... .+.++++++.---..++...+-..
T Consensus 209 ~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 209 TDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred HHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHh
Confidence 3444444334444445899999999999988887665433 245789988876667777665443
No 455
>PRK11823 DNA repair protein RadA; Provisional
Probab=77.45 E-value=6.3 Score=48.62 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHH-HhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 563 KGLEWMVS-LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 563 ~gv~~l~~-~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
.+++.++. -+..+.-.+|+-++|+|||..++.++..+... .+++|.|.-.....++.....++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHc
Confidence 45665552 11112234789999999999998888776532 34688888766666665555443
No 456
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=9.5 Score=47.84 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERW 628 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~ 628 (1331)
...+.||+.+.|+|||+.|-++...+ ..+++-|-...++..|..|.++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHH
Confidence 34467899999999999988887643 34455555558889999888773
No 457
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=77.40 E-value=5.4 Score=48.35 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=27.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
..+.+|.-+.|+|||..|-+++..+ ..+++.|....++..|
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHhh
Confidence 4567899999999999888776654 2345555444444333
No 458
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=77.33 E-value=5.6 Score=45.42 Aligned_cols=49 Identities=14% Similarity=0.172 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 559 EYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
++....++.++..+..+...+|..++|+|||..|-++...+ +.+++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 55666667777777778889999999999999988776533 34566664
No 459
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.08 E-value=18 Score=47.21 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=59.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc----cHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS----TLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKA 653 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s----ll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~ 653 (1331)
..|...+|.|||.++.-++..+....+.. .+.+|+-.. ...||..--+.. ++.+.+..
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~RigA~eQL~~~a~~~--gvpv~~~~--------------- 249 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRIGALEQLRIYGRIL--GVPVHAVK--------------- 249 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccchHHHHHHHHHHHhC--CCCccccC---------------
Confidence 36789999999988777766654333222 244444322 224443222211 11121111
Q ss_pred cCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc----cCCceeeeccCCCCCChHHHHHHHh
Q psy1544 654 SKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY----VAPHRLLLTGTPLQNKLPELWALLN 729 (1331)
Q Consensus 654 ~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~----~~~~rllLTgTPlqN~l~EL~~ll~ 729 (1331)
+...+.+....+. .+++||||=+=|.-+... +...+..+. .....|+|+||--...+.++...++
T Consensus 250 --------~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 250 --------DAADLRFALAALG--DKHLVLIDTVGMSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred --------CHHHHHHHHHHhc--CCCEEEEeCCCCCccCHH-HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 2222211111122 358999998887754332 333333322 2334577889864444455544443
No 460
>KOG1827|consensus
Probab=76.82 E-value=0.54 Score=58.45 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=74.9
Q ss_pred CCCcc-ccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHH
Q psy1544 1236 DGRVL-SEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLES 1314 (1331)
Q Consensus 1236 ~gr~~-~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~ 1314 (1331)
.++.. .+.|.+.|+...+|+||.+++-||.+....+++..++|.....|..|+.++|.|+..||..+..++.++..|.+
T Consensus 207 ~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 207 KPIVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred CCceeeecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 35544 78999999999999999999999999999999999999999999999999999999999999999999988866
Q ss_pred HH
Q psy1544 1315 VF 1316 (1331)
Q Consensus 1315 ~f 1316 (1331)
.+
T Consensus 287 ~d 288 (629)
T KOG1827|consen 287 ED 288 (629)
T ss_pred cc
Confidence 53
No 461
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=76.61 E-value=4.1 Score=44.17 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=13.9
Q ss_pred EEecCCCCCHHHHHHHH-HHHH
Q psy1544 579 ILADEMGLGKTIQTIAL-ITYL 599 (1331)
Q Consensus 579 ILADemGlGKTi~ai~l-i~~l 599 (1331)
++..-+|+|||+-|+.. +...
T Consensus 4 ~~~G~pGsGKS~~av~~~i~~~ 25 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSYVIIPA 25 (193)
T ss_dssp EEE--TTSSHHHHHHHHHHH-G
T ss_pred EEEcCCCCcHhHHHHHHHHHHH
Confidence 45667999999988777 5443
No 462
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=76.46 E-value=9.5 Score=42.70 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=30.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
+.-.+|+..+|+|||..++.++....... ..++|+++--.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCC
Confidence 33458999999999999999888776553 34688888543
No 463
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=76.37 E-value=31 Score=43.97 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=10.5
Q ss_pred hhchHHHHHHHHHHHHH
Q psy1544 244 LKVLNFQRQLRAEVIAC 260 (1331)
Q Consensus 244 l~l~~~q~~~r~~~~~~ 260 (1331)
|.||.-...|+..|-..
T Consensus 541 ~~~~~~~~~~~~~~~~~ 557 (562)
T TIGR01628 541 LHLLESPELLKSKVDEA 557 (562)
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55666666666666544
No 464
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=76.36 E-value=22 Score=41.81 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
.|.-+.|+|||.++..++..+... .+.++|+.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 456799999999988888776533 34466665
No 465
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=76.25 E-value=3.6 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=17.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l 599 (1331)
.++|..+.|+|||-.|--++..+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Confidence 46899999999997665554444
No 466
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=76.12 E-value=9.9 Score=49.20 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=66.9
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHH----HhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEE
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYF----SYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFV 955 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L----~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~L 955 (1331)
.|||..+..-.+-.....|.+++|-+.....+..+...+ ...|+++..++|+++..+|...++...+++ +.| +
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~I-i 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHL-V 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCE-E
Confidence 478887644333333456889999999988776655544 445899999999999999999999987543 445 4
Q ss_pred eecc-ccccccCCCCCCEEEEeC
Q psy1544 956 LSTR-AGGLGLNLQTADTVIIFD 977 (1331)
Q Consensus 956 lST~-aggeGLNL~~ad~VI~~D 977 (1331)
++|. ....++++....+||+=+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EecHHHHhccccccccceEEEec
Confidence 4554 444567777888777633
No 467
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=76.12 E-value=16 Score=51.87 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc-CCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK-KVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~-~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
..|-+-|.+++..++. ....-.+|.-..|+|||.+.-+++..+.... .....++.++|+.--.. ++... ++.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk---~L~e~--Gi~ 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG---EMRSA--GVD 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH---HHHhc--Ccc
Confidence 4689999999998875 1234557788899999987655555443221 12234777889864432 22221 110
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
. ..+...+... +.... .+.......++||||||-.+.+... ...+..+.....+++|-
T Consensus 1039 A----------~TI~s~L~~~---------~~~~~-~~~~~~~~~~llIVDEaSMv~~~~m--~~Ll~~~~~~garvVLV 1096 (1747)
T PRK13709 1039 A----------QTLASFLHDT---------QLQQR-SGETPDFSNTLFLLDESSMVGNTDM--ARAYALIAAGGGRAVSS 1096 (1747)
T ss_pred h----------hhHHHHhccc---------ccccc-cccCCCCCCcEEEEEccccccHHHH--HHHHHhhhcCCCEEEEe
Confidence 0 1111111000 00000 0001112458999999998866542 23333332234678888
Q ss_pred cCCCC
Q psy1544 714 GTPLQ 718 (1331)
Q Consensus 714 gTPlq 718 (1331)
|=+-|
T Consensus 1097 GD~~Q 1101 (1747)
T PRK13709 1097 GDTDQ 1101 (1747)
T ss_pred cchHh
Confidence 87654
No 468
>KOG0739|consensus
Probab=75.64 E-value=8.4 Score=43.68 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=35.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
.+|..+.|+||+..|-+++... ...+.-|....+++.|.-|-++..
T Consensus 169 iLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 169 ILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred EEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHHH
Confidence 4678999999999988887643 244677777788899998877643
No 469
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.64 E-value=18 Score=43.39 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=30.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC--c--cHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL--S--TLSNWSLE 624 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~--s--ll~qW~~E 624 (1331)
+...+++.+.|+|||.++..++.++...+ .++.+|+-- . .+.||..-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCccHHHHHHHH
Confidence 33446788899999999888887765442 345565533 2 25677553
No 470
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.32 E-value=19 Score=46.24 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCC--c-eEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFNNNL--N-GILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~-gILADemGlGKTi~ai~li~~l~~ 601 (1331)
|...+..+...+.++. . -|+..+.|+|||..|..++..+..
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4444444444443332 2 479999999999988888777754
No 471
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=75.24 E-value=19 Score=40.15 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=35.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
.+++.+.|+|||..+..++...... ..++++|.=..........+..+.
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCHHHHHHHHHHCC
Confidence 4788999999999999988765443 456788886666666666665543
No 472
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=75.22 E-value=4.5 Score=43.32 Aligned_cols=49 Identities=29% Similarity=0.270 Sum_probs=32.3
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
..++.|.+|..++|+|||..|++++..++..+ .+++++. ...+..++..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEE----HHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEee----cCceeccccc
Confidence 34567778899999999999999998887743 3355553 3445555543
No 473
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=75.14 E-value=5.9 Score=52.23 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWS 622 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~ 622 (1331)
..+.+|.-+.|+|||..|-+++..+ ..+++.|-+..++..|.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKWV 528 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhccc
Confidence 4456889999999999887776654 24466666665555553
No 474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.03 E-value=40 Score=40.51 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHH-hc--CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCC
Q psy1544 557 LKEYQIKGLEWMVSL-FN--NNLNGILADEMGLGKTIQTIALITYLMEKKKVN 606 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~-~~--~~~~gILADemGlGKTi~ai~li~~l~~~~~~~ 606 (1331)
-|+-|+..+...+.- +. ...|.++...+|+|||.++-.++..+.......
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~ 73 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV 73 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC
Confidence 455566555444332 22 233578899999999999988888887764433
No 475
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.00 E-value=9.7 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=18.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l 599 (1331)
+.+|.-+.|+|||..+.+++..+
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998887776654
No 476
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=75.00 E-value=7.6 Score=46.48 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=20.6
Q ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
..+..++|..+-|+|||..+-.++..+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 345556777779999998776666555443
No 477
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=74.97 E-value=11 Score=49.68 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHh------------cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 558 KEYQIKGLEWMVSLF------------NNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~------------~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
...+++.+.-++... ..+.+.+|..+.|+|||..+-+++..+ ..+++.|....++..|..+.
T Consensus 183 ~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~~~~~g~~ 256 (733)
T TIGR01243 183 LKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIMSKYYGES 256 (733)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHhcccccHH
Q ss_pred HHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc------------CCcc
Q psy1544 626 ERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM------------KNHH 693 (1331)
Q Consensus 626 ~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri------------kn~~ 693 (1331)
.... +..+....... ..+|+|||+|.+ +...
T Consensus 257 ~~~l--------------~~lf~~a~~~~-----------------------p~il~iDEid~l~~~r~~~~~~~~~~~~ 299 (733)
T TIGR01243 257 EERL--------------REIFKEAEENA-----------------------PSIIFIDEIDAIAPKREEVTGEVEKRVV 299 (733)
T ss_pred HHHH--------------HHHHHHHHhcC-----------------------CcEEEeehhhhhcccccCCcchHHHHHH
Q ss_pred hHHHHHHHHhccCCceeeeccC
Q psy1544 694 CKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 694 sk~~~~l~~~~~~~~rllLTgT 715 (1331)
..+...+..+......+++.+|
T Consensus 300 ~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 300 AQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred HHHHHHhhccccCCCEEEEeec
No 478
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.95 E-value=13 Score=38.94 Aligned_cols=140 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC-----hhHHHHHHHHhh
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS-----PHLRKTLQAQMK 652 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~-----~~~r~~~~~~~~ 652 (1331)
.+.-..|.|||-.|++++......+ .+++||==..-- ..=...+-+.++++.+..+... .+........
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g---~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a-- 80 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHG---YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA-- 80 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH--
Q ss_pred ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCce---eeeccCCCCCChHHHHHHHh
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHR---LLLTGTPLQNKLPELWALLN 729 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~r---llLTgTPlqN~l~EL~~ll~ 729 (1331)
-..+......+....+|+||+||.=..-+.+---...+..+...+.. ++|||--.+..+.++..++.
T Consensus 81 ----------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 81 ----------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred ----------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceee
Q ss_pred hhcC
Q psy1544 730 FLLP 733 (1331)
Q Consensus 730 fL~p 733 (1331)
-+.+
T Consensus 151 Em~~ 154 (159)
T cd00561 151 EMRE 154 (159)
T ss_pred ecce
No 479
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=74.53 E-value=5 Score=49.57 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCccHHHHHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK---VNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~---~~~p~LIV~P~sll~qW~~E~ 625 (1331)
++-+-|-+.++.=. +.-.|+-...|+|||.+|+.=+++|+...+ ..+++||+.|+.+.......+
T Consensus 212 TIQkEQneIIR~ek-----~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~V 279 (747)
T COG3973 212 TIQKEQNEIIRFEK-----NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRV 279 (747)
T ss_pred HhhHhHHHHHhccC-----CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHh
No 480
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.52 E-value=11 Score=48.33 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhHhhhcCCCCCchhhHHHHhhhcccccCC
Q psy1544 11 PPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEIKH 90 (1331)
Q Consensus 11 ppppppppp~p~~~~pp~pp~p~ppp~~~p~p~p~p~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (1331)
++.+++.+.++.+..+++..+.+.++..|+...+.+.++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 401 (585)
T PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKE--------------------------------------- 401 (585)
T ss_pred CCcccccccccccCCcCccCCCCCCCCcccccccccCCccc---------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHhhhccCCCCCChhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1544 91 AFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPP 170 (1331)
Q Consensus 91 ~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~~~~~~~~p~~p~~p~~~~~~p~pppp~pp~~~~~~~~p~~~~~pp 170 (1331)
+.+..++|+.|.|.|.+++.|.+||.++|.++.+-|.+.+...++
T Consensus 402 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (585)
T PRK14950 402 -----------------------------------PVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTP 446 (585)
T ss_pred -----------------------------------ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCcCCCCCC
Q ss_pred CCccc
Q psy1544 171 QPHQQ 175 (1331)
Q Consensus 171 pp~~~ 175 (1331)
|++.+
T Consensus 447 ~~~~~ 451 (585)
T PRK14950 447 PAPPK 451 (585)
T ss_pred CCCCc
No 481
>KOG0162|consensus
Probab=74.44 E-value=23 Score=44.49 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhHhhhcCCCCCchhhHHHHhh
Q psy1544 3 NSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMK 82 (1331)
Q Consensus 3 ~~~~~pppppppppppp~p~~~~pp~pp~p~ppp~~~p~p~p~p~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (1331)
..+-|+.+-|...-|.-+....++-.....++-+.|.++++..-.+.++
T Consensus 920 g~GlP~~Skps~k~p~~~tg~s~g~~~~~~~~r~~~~~~~~~~~~~~~p------------------------------- 968 (1106)
T KOG0162|consen 920 GTGLPPNSKPSRKKPRKATGYSSGRDAASTPTRRAPQNKQAYGQNGVSP------------------------------- 968 (1106)
T ss_pred cCCCCCCCCcCCcCcccCCCCCCCcccccCCCCCCCCCcccccCCCCCc-------------------------------
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHhhhccCCCCCChhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCC----------
Q psy1544 83 ANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPS---------- 152 (1331)
Q Consensus 83 ~~~~~~~~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~~~~~~~~p~~p~~p~~~~~~p~pppp~---------- 152 (1331)
-|+..|.|.+.+.......++|++....+..-+.+-|++.|.+
T Consensus 969 ---------------------------aA~~~p~p~~~~~~~~~~~~~p~~~s~~~s~~~~~~p~s~p~~~~~~~~~~~~ 1021 (1106)
T KOG0162|consen 969 ---------------------------AAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSARPSSKPTVFTKVPDAGAS 1021 (1106)
T ss_pred ---------------------------cccCCCCCCCCCCCccccCCCCCCcccccccccccCCCCCCccccccCcccCc
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCcccCCCC
Q psy1544 153 ----QPMPNQAQPMPLQQQPPPQPHQQQGHI 179 (1331)
Q Consensus 153 ----pp~~~~~~~~p~~~~~pppp~~~~~~~ 179 (1331)
.|..++.+||+.-.|+||||..++..+
T Consensus 1022 ~~~~~~s~~q~~pP~~g~P~PpPp~~~~k~p 1052 (1106)
T KOG0162|consen 1022 GNGRKPSGPQRPPPPAGRPKPPPPAKPPKNP 1052 (1106)
T ss_pred ccccCCCCCCCCCCCCCCCCccCCCCCCCCc
No 482
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=74.41 E-value=27 Score=40.18 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccE
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNV 658 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~V 658 (1331)
++.-..|.|||.++..++.++... ...++||.--.....=..++..|+ ...+..+
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a~~ql~~~~----------------------~~~~i~~ 130 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAAIEQLEEWA----------------------KRLGVDV 130 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHHHHHHHHHH----------------------HhCCeEE
Q ss_pred EEeeH-----HHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc----------cCCceeeeccCCCCCChHH
Q psy1544 659 LLTTY-----EYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY----------VAPHRLLLTGTPLQNKLPE 723 (1331)
Q Consensus 659 vItTy-----e~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~----------~~~~rllLTgTPlqN~l~E 723 (1331)
+...+ ..+...........+++||||=+-++-+ +..+...+..+. .....+.+++|--++.+..
T Consensus 131 ~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~ 209 (272)
T TIGR00064 131 IKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ 209 (272)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH
Q ss_pred HHHHHhhhcCC
Q psy1544 724 LWALLNFLLPS 734 (1331)
Q Consensus 724 L~~ll~fL~p~ 734 (1331)
.......+...
T Consensus 210 ~~~f~~~~~~~ 220 (272)
T TIGR00064 210 AKVFNEAVGLT 220 (272)
T ss_pred HHHHHhhCCCC
No 483
>KOG0566|consensus
Probab=74.18 E-value=16 Score=47.38 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhHhhhcCCCCCchhhHHHHh
Q psy1544 2 SNSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEM 81 (1331)
Q Consensus 2 ~~~~~~pppppppppppp~p~~~~pp~pp~p~ppp~~~p~p~p~p~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~ 81 (1331)
..-++.-|-.|.|.+||.+-++++.+-.+.|..+|..++.+.|.|...+.
T Consensus 974 ~ai~~skpl~~~~~~PP~~r~~~~s~~~~~p~~~~~s~~t~~~~~a~~a~------------------------------ 1023 (1080)
T KOG0566|consen 974 DAIPPSKPLIPRPIRPPSARSPSPSAKSPSPTEAPNSSSTSMPSPASAAT------------------------------ 1023 (1080)
T ss_pred ccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCccchhc------------------------------
Q ss_pred hhcccccCCCCCHHHHHHHHHHHHHhhhccCCCCCChhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1544 82 KANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQP 161 (1331)
Q Consensus 82 ~~~~~~~~~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~~~~~~~~p~~p~~p~~~~~~p~pppp~pp~~~~~~~ 161 (1331)
|+...+.-..|...++......+-+|.|-||+++++|+-++|-+|++|.+..
T Consensus 1024 ----------------------------~~~~~~~~~~P~~~~~s~~~~~~~~~~~~p~p~~~~p~~~a~~~~~~p~~~~ 1075 (1080)
T KOG0566|consen 1024 ----------------------------LSGPWYVISKPLAPPQSNNGLNQQAPAPLPPPAPPPPPVGAPLGPGPPLPNV 1075 (1080)
T ss_pred ----------------------------cCCCcccccCCccchhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCC
Q psy1544 162 MPLQQ 166 (1331)
Q Consensus 162 ~p~~~ 166 (1331)
+.+|+
T Consensus 1076 ~~~p~ 1080 (1080)
T KOG0566|consen 1076 PLPPP 1080 (1080)
T ss_pred CCCCC
No 484
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=74.12 E-value=7.1 Score=48.94 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCC-----------ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 559 EYQIKGLEWMVSLFNNNL-----------NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~-----------~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
+.+++-+..++..+.+.. +.||.-+.|+|||..+-+++..+ ..+++.+........|..+
T Consensus 61 ~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~~~~~~g~--- 131 (495)
T TIGR01241 61 DEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFVEMFVGV--- 131 (495)
T ss_pred HHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHHHHHHHHhcc---
Q ss_pred HcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchH------------
Q psy1544 628 WAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCK------------ 695 (1331)
Q Consensus 628 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk------------ 695 (1331)
+...+.............+|+|||.|.+......
T Consensus 132 ----------------------------------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~ 177 (495)
T TIGR01241 132 ----------------------------------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQT 177 (495)
T ss_pred ----------------------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHH
Q ss_pred ---HHHHHHHhccCCceeeeccC
Q psy1544 696 ---LTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 696 ---~~~~l~~~~~~~~rllLTgT 715 (1331)
+...+..+......+++-+|
T Consensus 178 ~~~lL~~~d~~~~~~~v~vI~aT 200 (495)
T TIGR01241 178 LNQLLVEMDGFGTNTGVIVIAAT 200 (495)
T ss_pred HHHHHhhhccccCCCCeEEEEec
No 485
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=73.90 E-value=16 Score=42.89 Aligned_cols=116 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCce---EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEe
Q psy1544 561 QIKGLEWMVSLFNNNLNG---ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAY 637 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~~g---ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~ 637 (1331)
|..++..+...+..+.-. |+..+-|+|||..|..++..++....... .|++..+..
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~---------------------h~D~~~~~~ 67 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE---------------------YVDIIEFKP 67 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC---------------------CCCeEEecc
Q ss_pred -cCChhHHHHHHHHhh---ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 638 -KGSPHLRKTLQAQMK---ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 638 -~g~~~~r~~~~~~~~---~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
.|..-....++.... ...+. ..+.++|||+||+|...........-.-....-.++|+
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p~~------------------~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~ 129 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKPYE------------------GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILL 129 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCccc------------------CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEE
Q ss_pred cC
Q psy1544 714 GT 715 (1331)
Q Consensus 714 gT 715 (1331)
++
T Consensus 130 ~~ 131 (313)
T PRK05564 130 CE 131 (313)
T ss_pred eC
No 486
>KOG2543|consensus
Probab=73.34 E-value=50 Score=39.21 Aligned_cols=213 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhcCCCce------EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH---HHHHHHHHHH
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNG------ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL---SNWSLEFERW 628 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~g------ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll---~qW~~E~~k~ 628 (1331)
|.+|...+.-++. +..+ +|....|+|||.++-.++..+ +.+...|++.... .-|..-+.+.
T Consensus 11 Re~qi~~L~~Llg----~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 11 RESQIRRLKSLLG----NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred hHHHHHHHHHHhC----CCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHHHh
Q ss_pred cCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhc----
Q psy1544 629 APSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFY---- 704 (1331)
Q Consensus 629 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~---- 704 (1331)
. ..+.+.-..-.......++.-.+..+....+. ..--++|+|-|+.++...+-+.+.+..++
T Consensus 81 ~--------~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~------d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 81 Q--------LADKDGDKVEGDAENFSDFIYLLVQWPAATNR------DQKVFLILDNADALRDMDAILLQCLFRLYELLN 146 (438)
T ss_pred c--------cCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc------CceEEEEEcCHHhhhccchHHHHHHHHHHHHhC
Q ss_pred cCCceeeeccCCCCC-------------------ChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHH
Q psy1544 705 VAPHRLLLTGTPLQN-------------------KLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETI 765 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN-------------------~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~ 765 (1331)
...-+++|++++..+ +.+|+-.++..-.|+.+. .+|-..|..-+
T Consensus 147 ~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~--~~~ya~fl~v~--------------- 209 (438)
T KOG2543|consen 147 EPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRK--LDVYAQFLHVL--------------- 209 (438)
T ss_pred CCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccc--hHHHHHHHHHH---------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHH-HHHHHHHH
Q psy1544 766 LIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQ-KVLYRHMH 815 (1331)
Q Consensus 766 ~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q-~~lY~~i~ 815 (1331)
...++.+.+ -++-+...+...+|...+.++.-..++.. +.+|+.+.
T Consensus 210 --l~vF~~~cr--d~~eL~~~~~~~wpky~epi~~~~i~~~d~~~L~r~ik 256 (438)
T KOG2543|consen 210 --LQVFYMACR--DVNELRSLISLAWPKYCEPITKGKIDPTDKARLWRHIK 256 (438)
T ss_pred --HHHHHHHhC--CHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHhh
No 487
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=73.11 E-value=7.5 Score=50.70 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhh
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMK 652 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~ 652 (1331)
.+..+.||.-+.|+|||..|-++...+......-. -++.....+..+..++........
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln--a~~~~i~dir~~i~~a~~~l~~~~------------------- 108 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN--AVLAGVKDLRAEVDRAKERLERHG------------------- 108 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh--hhhhhhHHHHHHHHHHHHHhhhcC-------------------
Q ss_pred ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccC
Q psy1544 653 ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 653 ~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgT 715 (1331)
.+.++||||+|++ +.....+|.........+++++|
T Consensus 109 ------------------------~~~IL~IDEIh~L---n~~qQdaLL~~lE~g~IiLI~aT 144 (725)
T PRK13341 109 ------------------------KRTILFIDEVHRF---NKAQQDALLPWVENGTITLIGAT 144 (725)
T ss_pred ------------------------CceEEEEeChhhC---CHHHHHHHHHHhcCceEEEEEec
No 488
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=73.11 E-value=12 Score=44.92 Aligned_cols=94 Identities=10% Similarity=0.199 Sum_probs=0.0
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC--ccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL--STLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQA 649 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~--sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~ 649 (1331)
...+..++|..+.|+|||..+..++..+.........+++++-. .-+..+.+.+.. .+.+..+......+.....
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg---~Vvast~d~p~~~~~~va~ 241 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKG---EVVASTFDEPASRHVQVAE 241 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhc---eEEEecCCCChHHHHHHHH
Q ss_pred -------HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc
Q psy1544 650 -------QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM 689 (1331)
Q Consensus 650 -------~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri 689 (1331)
.....+.+|+ |||||+||+
T Consensus 242 ~v~e~Ae~~~~~GkdVV---------------------LlIDEitR~ 267 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVV---------------------ILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHHcCCCeE---------------------EEEEChhHH
No 489
>KOG2893|consensus
Probab=73.04 E-value=44 Score=36.35 Aligned_cols=111 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhHhhhcCCCCCchhhHHHHhh
Q psy1544 3 NSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMK 82 (1331)
Q Consensus 3 ~~~~~pppppppppppp~p~~~~pp~pp~p~ppp~~~p~p~p~p~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (1331)
+..-+-+-|-+.--+-++-++.+..++||...+..+|-+..+.++..-+..+
T Consensus 108 ~~~~~~~~p~~~~~~f~~~p~~p~g~~pp~~~~gmpp~p~~~~~p~gmp~~~---------------------------- 159 (341)
T KOG2893|consen 108 GPPMPTPMPFPQHFPFPGMPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAY---------------------------- 159 (341)
T ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCC----------------------------
Q ss_pred hcccccCCCCCHHHHHHHHHHHHHhhhccCCCCCChhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1544 83 ANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPM 162 (1331)
Q Consensus 83 ~~~~~~~~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~~~~~~~~p~~p~~p~~~~~~p~pppp~pp~~~~~~~~ 162 (1331)
|+++.-||..+++-..|++.+|++-+++-.
T Consensus 160 --------------------------------------------------ppp~g~pp~~~pgv~mp~~g~pg~~~pp~m 189 (341)
T KOG2893|consen 160 --------------------------------------------------PPPRGYPPAPAPGVYMPPPGMPGAYPPPRM 189 (341)
T ss_pred --------------------------------------------------CCCCCCCCCCCCccccCCCCCCCCCCCCcC
Q ss_pred CCCCCCCCCCcccCCCC----CcccccccccCC
Q psy1544 163 PLQQQPPPQPHQQQGHI----SSQIKQSKLTNI 191 (1331)
Q Consensus 163 p~~~~~pppp~~~~~~~----~~~~~~~~~~p~ 191 (1331)
|-+..+|++++-+.... +.....+|+.++
T Consensus 190 pi~~g~p~~~p~pg~p~~s~~~~~~~~~r~~~p 222 (341)
T KOG2893|consen 190 PIGHGPPGGPPMPGPPQRSRFDQPDGGDRWGPP 222 (341)
T ss_pred cCCCCCCCCCCCCCCCccccccCCCCCCCCCCC
No 490
>PRK08840 replicative DNA helicase; Provisional
Probab=72.89 E-value=28 Score=43.21 Aligned_cols=149 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChh
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPH 642 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~ 642 (1331)
..+..+..-+..+.-.|||.-+|+|||.-++.++....... +.+++++..---..++...+-....++...-+....-
T Consensus 205 ~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l 282 (464)
T PRK08840 205 TDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQL 282 (464)
T ss_pred HHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCC
Q ss_pred HHHHHHHHhhc-----cCccEEEe-----eHHHHHhccCccccc--CccEEEEeCCcccCCcc---------hHHHHHHH
Q psy1544 643 LRKTLQAQMKA-----SKFNVLLT-----TYEYVIKDKGPLAKL--HWKYMIIDEGHRMKNHH---------CKLTHILN 701 (1331)
Q Consensus 643 ~r~~~~~~~~~-----~~~~VvIt-----Tye~l~~~~~~l~~~--~~~~vIiDEaHrikn~~---------sk~~~~l~ 701 (1331)
....+...... ...++.|. |...+......+..- ..++||||=-|.|+..+ +.+++.|+
T Consensus 283 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 362 (464)
T PRK08840 283 DDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLK 362 (464)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHH
Q ss_pred Hhcc--CCceeeec
Q psy1544 702 TFYV--APHRLLLT 713 (1331)
Q Consensus 702 ~~~~--~~~rllLT 713 (1331)
.+.+ .-.+|+||
T Consensus 363 ~lAkel~ipVi~Ls 376 (464)
T PRK08840 363 ALAKELNVPVVALS 376 (464)
T ss_pred HHHHHhCCeEEEEE
No 491
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=72.69 E-value=8.8 Score=45.07 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=0.0
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEE
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLII 612 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV 612 (1331)
.+.+.+.|..-+..++. .+.+.|++-+||+|||-..-+++..+.......+ +++|
T Consensus 126 ~g~~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~r-ivti 180 (323)
T PRK13833 126 SKIMTEAQASVIRSAID---SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDR-LVIL 180 (323)
T ss_pred cCCCCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCce-EEEe
No 492
>PRK08506 replicative DNA helicase; Provisional
Probab=72.68 E-value=26 Score=43.66 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCCh
Q psy1544 562 IKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSP 641 (1331)
Q Consensus 562 ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~ 641 (1331)
...+..+..-+..+.-.|||..+|+|||..++.++.... ..+.+++++..---..++...+.....++....+....
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~---~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~ 255 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL---NQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGD 255 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH---hcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCC
Q ss_pred ----hHHHHHHHHhhccCccEEE-----eeHHHHHhccCccccc--CccEEEEeCCcccCCcch---------HHHHHHH
Q psy1544 642 ----HLRKTLQAQMKASKFNVLL-----TTYEYVIKDKGPLAKL--HWKYMIIDEGHRMKNHHC---------KLTHILN 701 (1331)
Q Consensus 642 ----~~r~~~~~~~~~~~~~VvI-----tTye~l~~~~~~l~~~--~~~~vIiDEaHrikn~~s---------k~~~~l~ 701 (1331)
...+............++| .|...+......+... ..++||||=.|.|..... .+++.|+
T Consensus 256 l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK 335 (472)
T PRK08506 256 LDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLK 335 (472)
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHH
Q ss_pred Hhcc--CCceeeec
Q psy1544 702 TFYV--APHRLLLT 713 (1331)
Q Consensus 702 ~~~~--~~~rllLT 713 (1331)
.+.+ .-.+|+||
T Consensus 336 ~lAkel~ipVi~ls 349 (472)
T PRK08506 336 LLARELDIPIIALS 349 (472)
T ss_pred HHHHHhCCcEEEEe
No 493
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=72.50 E-value=14 Score=49.69 Aligned_cols=93 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEe
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVL 956 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~Ll 956 (1331)
+||..+....+-.....|.+|+|.+..+..+..+...|... ++++..++|.++..++..+++.+. .+.+.|++.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~--~g~~dIVIG 560 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELA--SGKIDILIG 560 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHH--cCCceEEEc
Q ss_pred eccccccccCCCCCCEEEE
Q psy1544 957 STRAGGLGLNLQTADTVII 975 (1331)
Q Consensus 957 ST~aggeGLNL~~ad~VI~ 975 (1331)
+.......+.+....+||+
T Consensus 561 Tp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 561 THKLLQKDVKFKDLGLLII 579 (926)
T ss_pred hHHHhhCCCCcccCCEEEe
No 494
>PRK14873 primosome assembly protein PriA; Provisional
Probab=72.37 E-value=13 Score=48.09 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-C-CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-G-FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g-~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
|||.+.+..++......|..+||...-......+...|..+ | ..+..+|++++..+|.........+... |+|.|
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~---IViGt 247 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR---VVVGT 247 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc---EEEEc
Q ss_pred ccc
Q psy1544 959 RAG 961 (1331)
Q Consensus 959 ~ag 961 (1331)
+.+
T Consensus 248 RSA 250 (665)
T PRK14873 248 RSA 250 (665)
T ss_pred cee
No 495
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=72.19 E-value=4.9 Score=48.75 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=0.0
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHh
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQM 651 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~ 651 (1331)
+....+.+|..+.|+|||..+-+++..+ ..+++.|....++..|..+-.+
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ge~~~------------------------ 225 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYLGEGPR------------------------ 225 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhcchhHH------------------------
Q ss_pred hccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc
Q psy1544 652 KASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM 689 (1331)
Q Consensus 652 ~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri 689 (1331)
.+.............+|+|||++.+
T Consensus 226 -------------~lr~lf~~A~~~~P~ILfIDEID~i 250 (398)
T PTZ00454 226 -------------MVRDVFRLARENAPSIIFIDEVDSI 250 (398)
T ss_pred -------------HHHHHHHHHHhcCCeEEEEECHhhh
No 496
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=71.99 E-value=28 Score=42.56 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccE
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNV 658 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~V 658 (1331)
+++-..|+|||.++..++.++... +..+++|+--.--.--...+..|+-...+-+|.........
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~------------ 168 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPV------------ 168 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHH------------
Q ss_pred EEeeHHHHHhccCcccccCccEEEEeCCcccCCcch---HHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCC
Q psy1544 659 LLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPS 734 (1331)
Q Consensus 659 vItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~ 734 (1331)
.........+....+++||||=+-|..+... .+.............+.+.||.-++...-.-..-..+.+.
T Consensus 169 -----~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~ 242 (429)
T TIGR01425 169 -----KIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG 242 (429)
T ss_pred -----HHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc
No 497
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=71.56 E-value=5 Score=42.63 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEE---------eCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHH
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLII---------VPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQA 649 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV---------~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~ 649 (1331)
++.-..|.|||-.|++++......+ .+++|| .....+..-.-+|....-++.... ............
T Consensus 9 ~v~~g~GkGKtt~a~g~a~ra~~~g---~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~-~~~~~~~~~~~~ 84 (173)
T TIGR00708 9 IVHTGNGKGKTTAAFGMALRALGHG---KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWET-QNREADTAIAKA 84 (173)
T ss_pred EEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecC-CCcHHHHHHHHH
Q ss_pred HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcc----hHHHHHHHHhccCCceeeeccCCCCCChHHHH
Q psy1544 650 QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHH----CKLTHILNTFYVAPHRLLLTGTPLQNKLPELW 725 (1331)
Q Consensus 650 ~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~----sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~ 725 (1331)
. +......+..-.||+||+||.-..-+.+ ..+...|... ...--++|||.-....+.|+.
T Consensus 85 ~---------------~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-p~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 85 A---------------WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER-PGHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred H---------------HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-CCCCEEEEECCCCCHHHHHhC
Q ss_pred HHHhhhcC
Q psy1544 726 ALLNFLLP 733 (1331)
Q Consensus 726 ~ll~fL~p 733 (1331)
.++.-+..
T Consensus 149 D~VTEm~~ 156 (173)
T TIGR00708 149 DLVTEMRP 156 (173)
T ss_pred ceeeeecc
No 498
>KOG0644|consensus
Probab=71.35 E-value=2.4 Score=53.42 Aligned_cols=61 Identities=20% Similarity=0.356 Sum_probs=0.0
Q ss_pred CCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1263 PMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1263 Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
|..+..|..+|+++.|++.+.|..|+.-|.+||.+|-+.+--+-..+..|...|...+-++
T Consensus 1053 pls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tlpk~ 1113 (1113)
T KOG0644|consen 1053 PLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTLPKL 1113 (1113)
T ss_pred cccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhccCC
No 499
>KOG1985|consensus
Probab=71.26 E-value=37 Score=43.68 Aligned_cols=130 Identities=24% Similarity=0.268 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhHhhhcCCCCCchhhHHHHhhhccc
Q psy1544 7 SPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRT 86 (1331)
Q Consensus 7 ~pppppppppppp~p~~~~pp~pp~p~ppp~~~p~p~p~p~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 86 (1331)
.|.-|....+++..++..++..+|...++..+.++|+..+.|++.
T Consensus 3 ~~~yP~aq~~~~~~~~~~~~~~~p~~~~~~~g~~~p~~~~~p~~~----------------------------------- 47 (887)
T KOG1985|consen 3 SPVYPSAQNPPPQTGPVQPALFPPASLTPQNGMPPPPSASMPPPA----------------------------------- 47 (887)
T ss_pred CCCCCcccCCCCCCCCcCcccCCCccCCccCCCCCCCcCCCCCCC-----------------------------------
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhccCCCCCChhhhhcccCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1544 87 EIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMP-PMSLHGPMPMPPSQPMPNQAQPMPLQ 165 (1331)
Q Consensus 87 ~~~~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~~~~~~~~p~~p~~p-~~~~~~p~pppp~pp~~~~~~~~p~~ 165 (1331)
+...|+.+..+.+..+++-++..+... ....++.|..+|+-.....++|.+..
T Consensus 48 --------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Sy~~~~~p~p~~~~ 101 (887)
T KOG1985|consen 48 --------------------------GSVPPASVTPAQPQIQQQIPPATPSMEGNLQLPNAPVGPPSYQQLQAPTPAQQQ 101 (887)
T ss_pred --------------------------CCCCCCCcCccccccCCCCCCcccccCcCCCCCCCCCCCcchhhccCCCCcccC
Q ss_pred CCCCCCCcccCCCCCcccccccccCCCCCCCC
Q psy1544 166 QQPPPQPHQQQGHISSQIKQSKLTNIPKPEGL 197 (1331)
Q Consensus 166 ~~~pppp~~~~~~~~~~~~~~~~~p~~~P~g~ 197 (1331)
+.++++|+..++.+..+....++.-...|.++
T Consensus 102 q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 133 (887)
T KOG1985|consen 102 QQPPPPPQVGSQPPQMGPPAPPPMNALQPVDL 133 (887)
T ss_pred CCCCCCCccCCCCCCCCCCCCCcccccCcccc
No 500
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.08 E-value=18 Score=46.42 Aligned_cols=100 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhHhhhcCCCCCchhhHHHHh
Q psy1544 2 SNSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEM 81 (1331)
Q Consensus 2 ~~~~~~pppppppppppp~p~~~~pp~pp~p~ppp~~~p~p~p~p~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~ 81 (1331)
..+...+.++..+.+++..+.+.++..|++..+.+.++..+.+...+++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 411 (585)
T PRK14950 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP------------------------------ 411 (585)
T ss_pred CcccccccccccCCcCccCCCCCCCCcccccccccCCcccccccCCCCCC------------------------------
Q ss_pred hhcccccCCCCCHHHHHHHHHHHHHhhhccCCCCCChhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy1544 82 KANRTEIKHAFTSAQVQQLRFQIMAYRLLARNQPLTPQLAMGVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQP 161 (1331)
Q Consensus 82 ~~~~~~~~~~fs~~ql~~LraQi~ayk~l~~~~p~p~~~~~~~~~~~~~~~p~~p~~p~~~~~~p~pppp~pp~~~~~~~ 161 (1331)
|+|.|.+++.+.+|+.++|.++-+-+.+-
T Consensus 412 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (585)
T PRK14950 412 ---------------------------------------------------VPPRPVAPPVPHTPESAPKLTRAAIPVDE 440 (585)
T ss_pred ---------------------------------------------------CCCCCCCCCCCCCCCCCCCcccccccCCc
Q ss_pred CCCCCCCCCCCcccCCCCCcc
Q psy1544 162 MPLQQQPPPQPHQQQGHISSQ 182 (1331)
Q Consensus 162 ~p~~~~~pppp~~~~~~~~~~ 182 (1331)
+...++++|+|........+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~ 461 (585)
T PRK14950 441 KPKYTPPAPPKEEEKALIADG 461 (585)
T ss_pred CCCCCCCCCCcccccCCCCcc
Done!