Query psy1544
Match_columns 1331
No_of_seqs 992 out of 5440
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:09:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 6.5E-77 2.2E-81 774.0 28.5 497 542-1057 222-734 (800)
2 1z3i_X Similar to RAD54-like; 100.0 8.4E-71 2.9E-75 699.7 40.2 495 553-1056 52-571 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 8.7E-66 3E-70 638.1 31.5 445 550-1035 31-478 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.2E-48 4.2E-53 515.4 27.7 440 554-1031 151-636 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 2.2E-43 7.5E-48 432.7 29.4 447 555-1028 8-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 1.2E-39 4.1E-44 400.7 17.1 378 553-1027 90-471 (472)
7 1z5z_A Helicase of the SNF2/RA 100.0 4.6E-39 1.6E-43 364.5 20.0 236 779-1035 13-249 (271)
8 4a2p_A RIG-I, retinoic acid in 100.0 2.3E-36 7.8E-41 378.6 31.1 453 555-1033 6-530 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 5.7E-36 2E-40 390.3 35.0 437 553-1033 245-771 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 4.3E-36 1.5E-40 395.6 32.8 447 554-1032 246-770 (936)
11 3tbk_A RIG-I helicase domain; 100.0 7.7E-36 2.6E-40 373.4 29.5 436 555-1032 3-528 (555)
12 4gl2_A Interferon-induced heli 100.0 2.5E-33 8.4E-38 361.4 29.0 439 555-1031 6-540 (699)
13 2oca_A DAR protein, ATP-depend 100.0 4.4E-33 1.5E-37 345.7 25.1 347 555-1016 112-464 (510)
14 2ykg_A Probable ATP-dependent 100.0 2.3E-32 7.7E-37 352.2 31.1 440 553-1015 10-521 (696)
15 3h1t_A Type I site-specific re 100.0 2.3E-32 7.8E-37 345.2 24.0 354 554-1007 176-558 (590)
16 1xti_A Probable ATP-dependent 100.0 3.6E-31 1.2E-35 316.4 26.6 330 555-1021 29-367 (391)
17 3hgt_A HDA1 complex subunit 3; 100.0 1.2E-31 4.1E-36 302.9 16.4 217 791-1020 20-247 (328)
18 1hv8_A Putative ATP-dependent 100.0 1.5E-30 5.3E-35 307.5 26.3 313 555-1011 27-346 (367)
19 1s2m_A Putative ATP-dependent 100.0 7.6E-30 2.6E-34 306.1 29.3 318 555-1011 42-366 (400)
20 2j0s_A ATP-dependent RNA helic 100.0 2.2E-30 7.5E-35 312.0 24.2 320 555-1011 58-384 (410)
21 2z0m_A 337AA long hypothetical 100.0 3.3E-30 1.1E-34 301.2 20.9 313 555-1020 15-334 (337)
22 3eiq_A Eukaryotic initiation f 100.0 1.2E-29 4.2E-34 305.4 23.8 320 555-1010 61-387 (414)
23 2db3_A ATP-dependent RNA helic 100.0 9.4E-29 3.2E-33 300.3 30.3 316 555-1009 77-406 (434)
24 3pey_A ATP-dependent RNA helic 100.0 3.4E-29 1.2E-33 299.1 24.7 312 555-1003 26-351 (395)
25 1fuu_A Yeast initiation factor 100.0 8.2E-30 2.8E-34 304.7 17.8 318 555-1010 42-366 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 1.9E-28 6.6E-33 295.5 26.3 319 555-1010 36-383 (417)
27 3fht_A ATP-dependent RNA helic 100.0 4.9E-28 1.7E-32 291.1 25.6 329 555-1022 46-390 (412)
28 3oiy_A Reverse gyrase helicase 100.0 1.2E-27 4.1E-32 288.8 27.5 319 554-1025 19-376 (414)
29 1oyw_A RECQ helicase, ATP-depe 100.0 6.7E-28 2.3E-32 298.7 24.7 305 555-1004 24-339 (523)
30 2v1x_A ATP-dependent DNA helic 99.9 5.1E-27 1.7E-31 293.9 24.3 310 555-1004 43-370 (591)
31 2eyq_A TRCF, transcription-rep 99.9 1.9E-26 6.5E-31 308.0 27.2 312 553-1009 600-921 (1151)
32 3sqw_A ATP-dependent RNA helic 99.9 5.5E-26 1.9E-30 286.1 29.9 338 555-1021 42-407 (579)
33 3fho_A ATP-dependent RNA helic 99.9 2.9E-27 9.8E-32 292.8 12.7 314 556-1004 141-466 (508)
34 3i5x_A ATP-dependent RNA helic 99.9 2.1E-25 7.2E-30 280.0 29.8 328 555-1010 93-449 (563)
35 3fmp_B ATP-dependent RNA helic 99.9 3.7E-27 1.3E-31 290.1 11.3 314 554-1003 112-441 (479)
36 1gm5_A RECG; helicase, replica 99.9 4.7E-26 1.6E-30 291.0 16.3 306 556-1003 368-692 (780)
37 2xgj_A ATP-dependent RNA helic 99.9 1.2E-24 4E-29 286.6 29.6 361 552-1011 82-500 (1010)
38 2dat_A Possible global transcr 99.9 1.4E-25 4.6E-30 221.9 12.6 113 1214-1326 10-122 (123)
39 3l9o_A ATP-dependent RNA helic 99.9 2.1E-24 7E-29 286.7 24.5 362 553-1013 181-600 (1108)
40 3k2j_A Protein polybromo-1; PB 99.9 2.9E-25 9.8E-30 221.0 12.2 115 1214-1328 14-128 (130)
41 3mb4_A Protein polybromo-1; PB 99.9 4.1E-25 1.4E-29 219.0 12.9 110 1216-1325 14-123 (124)
42 2grc_A Probable global transcr 99.9 2.4E-25 8.2E-30 221.9 11.1 116 1214-1329 8-124 (129)
43 3ljw_A Protein polybromo-1; al 99.9 4E-25 1.4E-29 217.8 11.9 112 1214-1325 5-116 (120)
44 3iu5_A Protein polybromo-1; PB 99.9 5.7E-25 1.9E-29 215.5 12.2 110 1218-1327 6-115 (116)
45 3mqm_A Probable histone-lysine 99.9 7.4E-25 2.5E-29 217.9 12.5 111 1215-1325 7-117 (126)
46 4a4z_A Antiviral helicase SKI2 99.9 1.1E-22 3.9E-27 267.8 30.4 381 552-1018 35-500 (997)
47 2p6r_A Afuhel308 helicase; pro 99.9 2.4E-23 8.3E-28 267.8 20.7 321 556-1013 25-391 (702)
48 2va8_A SSO2462, SKI2-type heli 99.9 1.4E-22 5E-27 261.3 27.5 327 556-1011 30-409 (715)
49 2zj8_A DNA helicase, putative 99.9 4.9E-23 1.7E-27 265.8 22.3 320 556-1013 23-390 (720)
50 3tlp_A Protein polybromo-1; PB 99.9 1.3E-23 4.4E-28 215.5 13.3 113 1218-1330 25-138 (150)
51 3iu6_A Protein polybromo-1; PB 99.9 1.7E-23 5.9E-28 207.2 12.7 108 1216-1327 6-113 (147)
52 4ddu_A Reverse gyrase; topoiso 99.9 1.1E-22 3.7E-27 270.2 24.3 278 554-980 76-388 (1104)
53 3d7c_A General control of amin 99.9 3.8E-23 1.3E-27 201.2 12.8 106 1214-1325 4-109 (112)
54 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.2E-22 1.1E-26 261.9 25.6 156 556-719 271-441 (1038)
55 3nxb_A CAT eye syndrome critic 99.9 3.3E-23 1.1E-27 203.1 10.4 101 1216-1322 15-115 (116)
56 2i7k_A Bromodomain-containing 99.9 8.5E-23 2.9E-27 199.3 12.3 106 1214-1325 5-110 (117)
57 3g0l_A Hwalp4, bromodomain adj 99.9 5.6E-23 1.9E-27 201.7 11.0 103 1217-1325 13-115 (117)
58 2d9e_A Peregrin; four-helix bu 99.9 1.2E-22 4.2E-27 199.8 12.7 103 1216-1324 6-108 (121)
59 3mb3_A PH-interacting protein; 99.9 6.3E-23 2.1E-27 206.5 10.8 106 1214-1325 18-124 (135)
60 2oss_A HUNK1 protein, bromodom 99.9 8.3E-23 2.8E-27 202.8 11.1 107 1215-1327 19-127 (127)
61 4alg_A Bromodomain-containing 99.9 8.3E-23 2.8E-27 209.3 11.4 108 1215-1328 30-139 (154)
62 3q2e_A Bromodomain and WD repe 99.9 1.6E-22 5.6E-27 200.0 11.2 106 1214-1325 7-113 (123)
63 1e6i_A Transcriptional activat 99.9 2.2E-22 7.5E-27 198.2 11.9 101 1219-1325 15-115 (121)
64 1gku_B Reverse gyrase, TOP-RG; 99.9 1E-21 3.4E-26 261.1 22.2 320 554-1026 55-468 (1054)
65 2yyn_A Transcription intermedi 99.9 3.1E-22 1.1E-26 200.8 12.4 106 1215-1327 18-125 (135)
66 2ouo_A HUNK1 protein, bromodom 99.9 2.6E-22 8.7E-27 200.1 11.4 105 1218-1325 23-129 (130)
67 3jvl_A Bromodomain-containing 99.9 1.6E-22 5.5E-27 199.4 9.3 108 1218-1328 10-119 (120)
68 3p1f_A CREB-binding protein; s 99.9 7.5E-22 2.6E-26 194.3 11.9 107 1213-1324 7-115 (119)
69 3hme_A Bromodomain-containing 99.9 7.4E-22 2.5E-26 195.0 11.4 101 1216-1322 12-112 (123)
70 3rcw_A Bromodomain-containing 99.9 1.1E-21 3.6E-26 197.6 12.6 102 1217-1324 13-114 (135)
71 3fkm_X Signaling protein; brom 99.9 1.3E-21 4.5E-26 203.0 11.9 107 1212-1324 16-124 (166)
72 3uv4_A Second bromodomain of h 99.8 5.3E-21 1.8E-25 196.4 11.9 104 1220-1324 28-131 (158)
73 3dai_A ATPase family AAA domai 99.8 2.4E-20 8.4E-25 186.1 12.6 101 1215-1321 8-112 (130)
74 2ri7_A Nucleosome-remodeling f 99.8 1.7E-20 5.9E-25 197.9 10.5 103 1216-1324 71-173 (174)
75 3o36_A Transcription intermedi 99.8 3.5E-20 1.2E-24 197.0 12.4 105 1214-1325 78-184 (184)
76 1tf5_A Preprotein translocase 99.8 5.3E-19 1.8E-23 221.5 23.2 117 880-1001 414-538 (844)
77 2dkw_A Hypothetical protein KI 99.8 1.5E-19 5E-24 179.8 13.0 99 1213-1322 8-110 (131)
78 2v6i_A RNA helicase; membrane, 99.8 1.7E-19 6E-24 218.2 15.8 95 898-1000 171-282 (431)
79 2jlq_A Serine protease subunit 99.8 1.2E-19 4.1E-24 221.0 13.1 93 898-998 188-300 (451)
80 3uv5_A Transcription initiatio 99.8 2.9E-19 9.9E-24 200.6 12.5 104 1215-1324 12-115 (265)
81 1yks_A Genome polyprotein [con 99.8 3E-19 1E-23 216.6 13.4 93 897-997 176-287 (440)
82 2wv9_A Flavivirin protease NS2 99.8 1.6E-19 5.4E-24 228.2 10.9 97 897-1001 409-526 (673)
83 2z83_A Helicase/nucleoside tri 99.8 3.9E-19 1.3E-23 216.8 13.6 104 898-1010 190-313 (459)
84 1nkt_A Preprotein translocase 99.8 1.2E-17 4.3E-22 208.6 24.2 117 880-1001 442-610 (922)
85 2fsf_A Preprotein translocase 99.8 2.7E-18 9.4E-23 214.5 18.3 118 879-1001 422-576 (853)
86 2whx_A Serine protease/ntpase/ 99.8 1E-18 3.4E-23 219.5 14.4 103 897-1008 354-476 (618)
87 3rc3_A ATP-dependent RNA helic 99.8 2.8E-18 9.6E-23 216.2 18.3 108 900-1009 322-444 (677)
88 3u5n_A E3 ubiquitin-protein li 99.8 1.1E-18 3.7E-23 188.9 12.4 107 1215-1328 79-205 (207)
89 1rif_A DAR protein, DNA helica 99.8 1.2E-18 4.2E-23 198.8 13.0 164 555-733 112-278 (282)
90 2ro1_A Transcription intermedi 99.8 6.9E-19 2.4E-23 186.7 10.1 101 1217-1328 76-181 (189)
91 3aad_A Transcription initiatio 99.8 5.8E-19 2E-23 200.4 9.6 103 1215-1323 45-147 (292)
92 3o8b_A HCV NS3 protease/helica 99.8 3.8E-18 1.3E-22 212.5 17.4 275 557-1013 218-517 (666)
93 3uv5_A Transcription initiatio 99.8 1.6E-18 5.4E-23 194.7 12.1 87 1238-1324 152-238 (265)
94 2r0y_A Chromatin structure-rem 99.8 7.3E-19 2.5E-23 200.5 9.0 87 1236-1322 176-262 (311)
95 4f92_B U5 small nuclear ribonu 99.7 1.2E-16 4.2E-21 219.4 31.6 323 555-1010 925-1308(1724)
96 2r10_A Chromatin structure-rem 99.7 1.6E-18 5.6E-23 202.3 11.1 87 1236-1322 226-312 (361)
97 2xau_A PRE-mRNA-splicing facto 99.7 4.5E-18 1.5E-22 218.9 14.0 112 897-1012 302-445 (773)
98 3aad_A Transcription initiatio 99.7 4.7E-18 1.6E-22 193.0 11.8 87 1238-1324 185-271 (292)
99 4f92_B U5 small nuclear ribonu 99.7 5E-17 1.7E-21 223.3 22.4 327 555-1012 78-475 (1724)
100 2hjv_A ATP-dependent RNA helic 99.7 1.9E-17 6.4E-22 173.0 13.3 134 879-1021 18-151 (163)
101 1t5i_A C_terminal domain of A 99.7 1.5E-17 5.1E-22 175.4 12.0 124 879-1009 14-137 (172)
102 2jgn_A DBX, DDX3, ATP-dependen 99.7 1E-17 3.4E-22 178.8 10.4 127 878-1010 27-153 (185)
103 2d7d_A Uvrabc system protein B 99.7 4.6E-16 1.6E-20 197.2 26.5 125 882-1012 429-558 (661)
104 2r0y_A Chromatin structure-rem 99.7 6.5E-18 2.2E-22 192.7 8.4 101 1217-1323 28-129 (311)
105 2r10_A Chromatin structure-rem 99.7 4.5E-18 1.5E-22 198.6 6.9 100 1218-1323 79-179 (361)
106 1fuk_A Eukaryotic initiation f 99.7 6.5E-17 2.2E-21 169.3 14.9 123 883-1012 17-139 (165)
107 2fz4_A DNA repair protein RAD2 99.7 5.6E-17 1.9E-21 180.1 13.7 143 552-721 89-233 (237)
108 2p6n_A ATP-dependent RNA helic 99.7 4.5E-17 1.5E-21 174.6 10.8 124 879-1010 38-161 (191)
109 3jux_A Protein translocase sub 99.7 2.3E-14 7.7E-19 175.6 35.0 118 879-1001 455-580 (822)
110 1c4o_A DNA nucleotide excision 99.7 9.8E-15 3.4E-19 185.2 32.9 126 880-1011 421-551 (664)
111 2rb4_A ATP-dependent RNA helic 99.7 2.7E-16 9.2E-21 166.2 13.5 123 882-1011 20-148 (175)
112 1t6n_A Probable ATP-dependent 99.6 1.1E-15 3.9E-20 167.3 15.9 162 556-723 36-206 (220)
113 2yjt_D ATP-dependent RNA helic 99.5 1.2E-17 4.2E-22 175.7 0.0 118 881-1003 15-132 (170)
114 3eaq_A Heat resistant RNA depe 99.6 5.9E-16 2E-20 168.9 12.7 125 879-1010 14-138 (212)
115 2gxq_A Heat resistant RNA depe 99.6 1.5E-15 5.2E-20 164.4 15.4 156 555-716 22-185 (207)
116 3b6e_A Interferon-induced heli 99.6 1.3E-15 4.4E-20 165.9 11.9 156 554-715 31-216 (216)
117 1q0u_A Bstdead; DEAD protein, 99.6 2.2E-15 7.6E-20 165.0 13.3 162 555-723 25-197 (219)
118 1vec_A ATP-dependent RNA helic 99.6 5.1E-15 1.8E-19 160.2 15.8 156 555-716 24-187 (206)
119 2oxc_A Probable ATP-dependent 99.6 4.5E-15 1.6E-19 163.9 15.7 155 555-716 45-208 (230)
120 2pl3_A Probable ATP-dependent 99.6 6E-15 2.1E-19 163.5 15.4 156 555-717 46-213 (236)
121 1qde_A EIF4A, translation init 99.6 5.5E-15 1.9E-19 162.3 14.4 156 555-717 35-197 (224)
122 3ber_A Probable ATP-dependent 99.6 9.1E-15 3.1E-19 163.6 16.5 157 555-717 64-228 (249)
123 3bor_A Human initiation factor 99.6 1E-14 3.6E-19 161.8 13.8 158 555-717 51-215 (237)
124 3i32_A Heat resistant RNA depe 99.6 6.5E-15 2.2E-19 168.5 12.2 126 879-1011 11-136 (300)
125 1wrb_A DJVLGB; RNA helicase, D 99.5 4.5E-14 1.5E-18 158.2 16.2 156 555-716 44-219 (253)
126 3iuy_A Probable ATP-dependent 99.5 8.5E-14 2.9E-18 153.3 15.4 156 555-716 41-208 (228)
127 3ly5_A ATP-dependent RNA helic 99.5 1.6E-13 5.6E-18 154.6 17.6 157 555-717 75-243 (262)
128 3fe2_A Probable ATP-dependent 99.5 3.4E-13 1.2E-17 150.0 16.3 156 555-716 50-217 (242)
129 3dkp_A Probable ATP-dependent 99.4 4.7E-13 1.6E-17 149.1 13.9 157 555-716 50-220 (245)
130 2vl7_A XPD; helicase, unknown 99.3 1.1E-11 3.6E-16 154.1 18.0 91 886-983 371-466 (540)
131 3fmo_B ATP-dependent RNA helic 99.3 2E-12 6.7E-17 148.7 10.4 157 554-717 112-278 (300)
132 2ipc_A Preprotein translocase 99.3 4.4E-11 1.5E-15 149.4 21.0 149 553-729 76-240 (997)
133 3lqh_A Histone-lysine N-methyl 99.2 3.2E-11 1.1E-15 125.9 9.7 98 1214-1328 72-169 (183)
134 4a15_A XPD helicase, ATP-depen 99.0 1.3E-08 4.5E-13 128.0 24.3 82 556-639 3-87 (620)
135 3llm_A ATP-dependent RNA helic 98.8 4E-09 1.4E-13 116.6 9.1 150 556-716 61-218 (235)
136 3crv_A XPD/RAD3 related DNA he 98.8 2.6E-08 8.8E-13 124.1 13.4 131 555-691 2-187 (551)
137 4b3f_X DNA-binding protein smu 97.4 0.00061 2.1E-08 86.3 13.8 72 552-629 185-257 (646)
138 3upu_A ATP-dependent DNA helic 97.3 0.0015 5.2E-08 79.1 14.9 142 555-719 24-167 (459)
139 2gk6_A Regulator of nonsense t 97.3 0.0016 5.5E-08 82.0 15.5 150 555-719 179-376 (624)
140 2xzl_A ATP-dependent helicase 97.1 0.003 1E-07 81.5 15.2 149 555-719 359-554 (802)
141 3e1s_A Exodeoxyribonuclease V, 97.1 0.0023 7.8E-08 79.5 12.9 132 554-719 187-318 (574)
142 2wjy_A Regulator of nonsense t 97.0 0.0036 1.2E-07 80.7 14.8 150 555-719 355-552 (800)
143 1w36_D RECD, exodeoxyribonucle 96.5 0.01 3.5E-07 74.3 12.7 146 558-721 151-303 (608)
144 3lfu_A DNA helicase II; SF1 he 96.3 0.19 6.4E-06 63.4 22.9 69 555-629 8-78 (647)
145 2orw_A Thymidine kinase; TMTK, 96.1 0.01 3.5E-07 62.4 8.2 35 578-615 6-40 (184)
146 2o0j_A Terminase, DNA packagin 95.9 0.076 2.6E-06 62.2 15.2 157 553-729 160-324 (385)
147 3cpe_A Terminase, DNA packagin 95.5 0.12 4E-06 64.6 15.3 149 553-719 160-316 (592)
148 1xx6_A Thymidine kinase; NESG, 95.1 0.042 1.4E-06 58.0 8.3 35 578-615 11-45 (191)
149 2j9r_A Thymidine kinase; TK1, 95.0 0.071 2.4E-06 57.0 9.5 35 579-616 32-66 (214)
150 1l8q_A Chromosomal replication 95.0 0.11 3.8E-06 59.4 12.0 99 576-715 38-139 (324)
151 2b8t_A Thymidine kinase; deoxy 94.7 0.04 1.4E-06 59.6 6.9 39 575-616 12-50 (223)
152 2orv_A Thymidine kinase; TP4A 94.5 0.13 4.3E-06 55.6 9.9 35 579-616 23-57 (234)
153 1a5t_A Delta prime, HOLB; zinc 94.4 0.18 6.3E-06 58.0 11.9 46 557-602 3-51 (334)
154 3vkw_A Replicase large subunit 94.0 0.082 2.8E-06 62.7 7.9 108 578-719 164-272 (446)
155 3ec2_A DNA replication protein 93.5 0.57 1.9E-05 48.3 12.6 42 559-600 17-63 (180)
156 2chg_A Replication factor C sm 93.4 0.69 2.4E-05 48.6 13.4 25 577-601 40-64 (226)
157 3bos_A Putative DNA replicatio 93.3 0.14 4.9E-06 55.0 8.0 29 574-602 51-79 (242)
158 4b4t_J 26S protease regulatory 93.2 0.45 1.6E-05 55.7 12.2 48 574-627 181-228 (405)
159 3syl_A Protein CBBX; photosynt 93.1 0.11 3.9E-06 58.7 7.1 38 577-614 69-107 (309)
160 2z4s_A Chromosomal replication 93.0 0.44 1.5E-05 57.0 12.3 102 576-715 131-235 (440)
161 2w58_A DNAI, primosome compone 92.6 0.4 1.4E-05 50.4 9.9 26 576-601 55-80 (202)
162 1w4r_A Thymidine kinase; type 92.4 0.41 1.4E-05 50.3 9.5 34 579-615 24-57 (195)
163 1iqp_A RFCS; clamp loader, ext 92.0 0.38 1.3E-05 54.5 9.5 24 577-600 48-71 (327)
164 1njg_A DNA polymerase III subu 91.8 0.94 3.2E-05 48.2 11.9 43 558-600 28-70 (250)
165 3h4m_A Proteasome-activating n 91.7 0.18 6E-06 56.4 6.2 38 574-617 50-87 (285)
166 3vfd_A Spastin; ATPase, microt 91.7 0.28 9.5E-06 57.7 8.1 41 575-621 148-188 (389)
167 2p65_A Hypothetical protein PF 91.6 0.47 1.6E-05 48.5 8.9 27 575-601 43-69 (187)
168 3co5_A Putative two-component 91.4 0.15 5.2E-06 50.8 4.6 24 573-596 25-48 (143)
169 3u61_B DNA polymerase accessor 91.2 0.74 2.5E-05 52.3 10.8 41 677-718 105-147 (324)
170 2gno_A DNA polymerase III, gam 91.1 0.7 2.4E-05 52.4 10.4 38 561-598 2-41 (305)
171 3te6_A Regulatory protein SIR3 90.9 1.1 3.9E-05 50.9 11.8 46 558-603 25-73 (318)
172 1jbk_A CLPB protein; beta barr 90.8 0.71 2.4E-05 47.2 9.4 26 576-601 44-69 (195)
173 1sxj_D Activator 1 41 kDa subu 90.8 0.44 1.5E-05 54.7 8.4 26 576-601 59-84 (353)
174 2qp9_X Vacuolar protein sortin 90.5 0.24 8.2E-06 57.5 5.9 24 576-599 85-108 (355)
175 3n70_A Transport activator; si 90.2 0.26 8.9E-06 49.1 5.1 25 572-596 21-45 (145)
176 3eie_A Vacuolar protein sortin 90.2 0.24 8.3E-06 56.6 5.5 38 576-619 52-89 (322)
177 2v0f_A Chromodomain-helicase-D 90.1 0.11 3.7E-06 46.5 1.8 47 442-488 8-54 (87)
178 4b4t_H 26S protease regulatory 90.1 1.1 3.9E-05 53.2 11.1 46 574-625 242-287 (467)
179 2bjv_A PSP operon transcriptio 89.9 0.75 2.6E-05 50.6 9.1 26 572-597 26-51 (265)
180 2qz4_A Paraplegin; AAA+, SPG7, 89.7 1.3 4.6E-05 48.2 10.9 37 575-617 39-75 (262)
181 1xwi_A SKD1 protein; VPS4B, AA 89.6 0.51 1.8E-05 53.9 7.6 39 576-619 46-84 (322)
182 3e2i_A Thymidine kinase; Zn-bi 89.6 1.1 3.9E-05 47.7 9.6 35 579-616 32-66 (219)
183 4b4t_L 26S protease subunit RP 89.1 1.3 4.4E-05 52.6 10.6 44 575-624 215-258 (437)
184 2r2a_A Uncharacterized protein 88.9 0.29 9.8E-06 51.9 4.4 22 578-599 8-29 (199)
185 2v1u_A Cell division control p 88.8 1.2 4.1E-05 51.6 10.2 29 574-602 43-71 (387)
186 1fnn_A CDC6P, cell division co 88.7 3.5 0.00012 47.6 14.1 23 577-599 46-68 (389)
187 2qgz_A Helicase loader, putati 88.6 1.3 4.6E-05 50.1 10.1 26 575-600 152-177 (308)
188 1ofh_A ATP-dependent HSL prote 88.3 1.2 3.9E-05 50.0 9.3 25 575-599 50-74 (310)
189 2kjq_A DNAA-related protein; s 88.1 1.6 5.6E-05 43.6 9.2 27 574-600 35-61 (149)
190 2zan_A Vacuolar protein sortin 87.9 0.6 2.1E-05 55.9 6.9 41 576-621 168-208 (444)
191 4b4t_I 26S protease regulatory 87.8 1.9 6.3E-05 50.9 10.6 46 575-626 216-261 (437)
192 1jr3_A DNA polymerase III subu 87.3 3.3 0.00011 47.6 12.7 42 559-600 22-63 (373)
193 3uk6_A RUVB-like 2; hexameric 87.2 0.93 3.2E-05 52.4 7.8 53 558-614 49-105 (368)
194 1sxj_B Activator 1 37 kDa subu 87.1 1 3.4E-05 50.9 7.9 25 577-601 44-68 (323)
195 3cf0_A Transitional endoplasmi 87.0 0.63 2.2E-05 52.5 6.0 26 574-599 48-73 (301)
196 2q6t_A DNAB replication FORK h 86.9 2.7 9.4E-05 50.1 11.9 60 564-625 189-248 (444)
197 3hu3_A Transitional endoplasmi 86.7 0.9 3.1E-05 55.0 7.5 25 574-598 237-261 (489)
198 1sxj_C Activator 1 40 kDa subu 86.5 1.6 5.6E-05 49.9 9.3 23 578-600 49-71 (340)
199 4b4t_M 26S protease regulatory 86.3 1 3.5E-05 53.5 7.4 45 575-625 215-259 (434)
200 2qby_B CDC6 homolog 3, cell di 86.3 0.9 3.1E-05 52.7 7.0 45 558-602 25-72 (384)
201 3t15_A Ribulose bisphosphate c 86.1 0.79 2.7E-05 51.6 6.1 36 576-617 37-72 (293)
202 2r6a_A DNAB helicase, replicat 85.7 3 0.0001 49.9 11.4 59 564-624 192-250 (454)
203 2r8r_A Sensor protein; KDPD, P 85.6 3.1 0.00011 44.7 10.1 44 576-622 7-52 (228)
204 3d8b_A Fidgetin-like protein 1 85.6 0.77 2.6E-05 53.2 5.9 39 575-619 117-155 (357)
205 1ojl_A Transcriptional regulat 85.5 2.1 7E-05 48.4 9.3 41 573-616 23-63 (304)
206 4fcw_A Chaperone protein CLPB; 85.3 2.7 9.3E-05 47.1 10.2 34 577-613 49-82 (311)
207 3hjh_A Transcription-repair-co 84.3 3.5 0.00012 49.7 10.9 88 577-671 16-118 (483)
208 1sxj_A Activator 1 95 kDa subu 84.2 2.7 9.1E-05 51.3 10.1 24 576-599 78-101 (516)
209 4b4t_K 26S protease regulatory 83.9 1.4 4.9E-05 52.1 7.2 43 575-623 206-248 (428)
210 3k1j_A LON protease, ATP-depen 83.7 1.9 6.3E-05 53.8 8.6 32 568-599 53-84 (604)
211 3hws_A ATP-dependent CLP prote 83.7 1.3 4.3E-05 51.4 6.6 34 575-614 51-84 (363)
212 2qby_A CDC6 homolog 1, cell di 83.7 2.3 7.7E-05 49.1 8.8 28 575-602 45-72 (386)
213 2chq_A Replication factor C sm 83.1 0.66 2.3E-05 52.2 3.8 24 577-600 40-63 (319)
214 3bgw_A DNAB-like replicative h 83.1 4.5 0.00015 48.2 11.2 60 563-625 185-244 (444)
215 1sxj_E Activator 1 40 kDa subu 81.8 4.5 0.00015 46.2 10.3 40 561-600 19-61 (354)
216 2cvh_A DNA repair and recombin 81.4 4.5 0.00015 42.5 9.4 54 564-623 8-64 (220)
217 3b9p_A CG5977-PA, isoform A; A 80.6 1.2 4.1E-05 49.9 4.7 25 575-599 54-78 (297)
218 1d2n_A N-ethylmaleimide-sensit 80.5 2.6 9E-05 46.4 7.4 23 576-598 65-87 (272)
219 4a1f_A DNAB helicase, replicat 80.2 4.2 0.00014 46.6 9.1 60 563-625 34-93 (338)
220 3kl4_A SRP54, signal recogniti 80.0 4.3 0.00015 48.1 9.3 33 578-613 100-132 (433)
221 1uaa_A REP helicase, protein ( 80.0 2.6 8.8E-05 53.2 8.0 68 556-629 2-71 (673)
222 3pfi_A Holliday junction ATP-d 79.9 9.1 0.00031 43.4 12.0 23 576-598 56-78 (338)
223 3pvs_A Replication-associated 79.3 2.7 9.2E-05 50.2 7.4 23 577-599 52-74 (447)
224 2ce7_A Cell division protein F 79.1 3.5 0.00012 49.5 8.3 33 576-614 50-82 (476)
225 1w5s_A Origin recognition comp 79.0 6.2 0.00021 46.0 10.4 44 558-601 27-78 (412)
226 2cka_A Chromodomain-helicase-D 79.0 0.71 2.4E-05 42.0 1.6 40 449-488 42-81 (95)
227 1g5t_A COB(I)alamin adenosyltr 78.7 7 0.00024 41.0 9.4 138 575-731 28-174 (196)
228 1gm5_A RECG; helicase, replica 78.3 4.3 0.00015 51.9 9.3 98 880-979 399-500 (780)
229 3dm5_A SRP54, signal recogniti 78.1 5.9 0.0002 47.0 9.7 57 578-637 103-159 (443)
230 1um8_A ATP-dependent CLP prote 77.5 4.4 0.00015 46.9 8.5 25 575-599 72-96 (376)
231 2dl6_A Chromodomain-helicase-D 76.7 0.64 2.2E-05 41.3 0.6 41 448-488 15-55 (83)
232 3bh0_A DNAB-like replicative h 76.5 7.2 0.00024 44.1 9.6 62 563-627 56-117 (315)
233 1qvr_A CLPB protein; coiled co 76.4 6.8 0.00023 50.9 10.5 27 575-601 191-217 (854)
234 1xp8_A RECA protein, recombina 74.9 15 0.00052 42.4 11.9 56 564-622 61-118 (366)
235 1r6b_X CLPA protein; AAA+, N-t 74.9 7.2 0.00025 49.8 10.1 28 574-601 206-233 (758)
236 1hqc_A RUVB; extended AAA-ATPa 72.4 10 0.00035 42.5 9.6 25 575-599 38-62 (324)
237 1pjr_A PCRA; DNA repair, DNA r 71.2 5.5 0.00019 50.7 7.6 67 556-628 11-79 (724)
238 2w0m_A SSO2452; RECA, SSPF, un 70.9 16 0.00056 38.3 10.3 49 574-625 22-70 (235)
239 3crv_A XPD/RAD3 related DNA he 70.8 10 0.00036 46.4 9.8 77 896-982 391-475 (551)
240 2zpa_A Uncharacterized protein 70.8 8.2 0.00028 48.1 8.7 116 554-716 173-288 (671)
241 3cf2_A TER ATPase, transitiona 70.5 2.9 9.9E-05 53.4 4.7 42 575-622 511-552 (806)
242 2px0_A Flagellar biosynthesis 68.7 11 0.00038 42.1 8.6 34 578-613 108-141 (296)
243 2zr9_A Protein RECA, recombina 67.8 9.9 0.00034 43.7 8.1 45 574-621 60-104 (349)
244 3oiy_A Reverse gyrase helicase 67.8 9.8 0.00033 44.4 8.4 94 880-975 46-145 (414)
245 2qen_A Walker-type ATPase; unk 66.9 6.3 0.00021 44.6 6.2 37 558-597 17-53 (350)
246 2ckc_A Chromodomain-helicase-D 66.8 2 6.7E-05 37.1 1.4 39 449-487 23-61 (80)
247 2dhr_A FTSH; AAA+ protein, hex 66.6 15 0.00052 44.2 9.7 23 576-598 65-87 (499)
248 4dzz_A Plasmid partitioning pr 64.3 38 0.0013 34.8 11.3 112 581-731 8-121 (206)
249 3pxi_A Negative regulator of g 61.0 9.2 0.00031 48.9 6.7 24 577-600 523-546 (758)
250 2eyq_A TRCF, transcription-rep 60.6 18 0.0006 48.5 9.5 94 880-975 634-731 (1151)
251 2fna_A Conserved hypothetical 60.6 33 0.0011 38.5 10.8 37 558-599 18-54 (357)
252 3cf2_A TER ATPase, transitiona 58.5 8.9 0.0003 49.0 5.8 41 576-622 239-279 (806)
253 4ddu_A Reverse gyrase; topoiso 55.9 19 0.00065 47.9 8.6 96 880-977 103-204 (1104)
254 1u94_A RECA protein, recombina 55.6 21 0.00072 41.0 7.9 42 574-618 62-103 (356)
255 3u4q_A ATP-dependent helicase/ 54.8 14 0.00047 50.0 7.1 60 553-618 7-69 (1232)
256 2c9o_A RUVB-like 1; hexameric 53.0 12 0.00041 44.6 5.5 42 576-621 64-105 (456)
257 2zts_A Putative uncharacterize 51.2 27 0.00091 37.1 7.5 51 575-627 30-80 (251)
258 1vma_A Cell division protein F 51.2 23 0.00079 39.8 7.1 32 579-613 108-139 (306)
259 1q57_A DNA primase/helicase; d 48.8 33 0.0011 41.3 8.6 60 564-625 231-290 (503)
260 1ypw_A Transitional endoplasmi 48.1 18 0.00062 46.5 6.3 24 574-597 237-260 (806)
261 3cmu_A Protein RECA, recombina 46.0 56 0.0019 45.9 10.8 51 574-629 1426-1476(2050)
262 3u4q_B ATP-dependent helicase/ 45.8 20 0.00069 48.1 6.5 48 580-627 6-53 (1166)
263 3gk5_A Uncharacterized rhodane 44.6 21 0.00072 33.1 4.6 45 888-933 46-90 (108)
264 1ls1_A Signal recognition part 44.5 49 0.0017 36.8 8.5 33 579-614 102-134 (295)
265 1lv7_A FTSH; alpha/beta domain 44.0 26 0.00089 37.8 6.0 25 575-599 45-69 (257)
266 3eul_A Possible nitrate/nitrit 43.1 38 0.0013 32.7 6.6 40 675-716 59-99 (152)
267 1t6n_A Probable ATP-dependent 43.1 94 0.0032 32.2 10.1 91 880-976 61-165 (220)
268 3g5j_A Putative ATP/GTP bindin 42.7 22 0.00075 33.9 4.6 51 884-934 75-126 (134)
269 1wp9_A ATP-dependent RNA helic 42.4 62 0.0021 37.7 9.5 89 880-975 33-131 (494)
270 2l82_A Designed protein OR32; 41.7 69 0.0023 29.4 7.1 46 901-946 5-50 (162)
271 2dr3_A UPF0273 protein PH0284; 41.5 42 0.0014 35.5 7.1 48 575-625 23-70 (247)
272 2xxa_A Signal recognition part 41.4 53 0.0018 38.7 8.5 35 579-615 104-138 (433)
273 2r44_A Uncharacterized protein 41.3 13 0.00045 41.9 3.2 37 563-599 34-70 (331)
274 1tue_A Replication protein E1; 40.7 24 0.00083 37.2 4.7 23 577-599 60-82 (212)
275 4e7p_A Response regulator; DNA 40.3 57 0.0019 31.3 7.3 84 632-716 21-104 (150)
276 3sxu_A DNA polymerase III subu 39.7 1.1E+02 0.0039 30.3 9.3 82 881-980 22-106 (150)
277 3io5_A Recombination and repai 39.4 64 0.0022 36.4 8.2 42 578-620 31-72 (333)
278 3ipz_A Monothiol glutaredoxin- 39.4 59 0.002 30.1 6.9 54 890-944 10-69 (109)
279 1zu4_A FTSY; GTPase, signal re 39.3 1.4E+02 0.0049 33.4 11.4 32 579-613 109-140 (320)
280 2oxc_A Probable ATP-dependent 38.8 81 0.0028 33.1 8.8 88 880-975 71-172 (230)
281 3ber_A Probable ATP-dependent 38.7 1.1E+02 0.0039 32.5 10.1 89 880-975 90-192 (249)
282 2ffh_A Protein (FFH); SRP54, s 38.3 62 0.0021 38.1 8.3 33 579-614 102-134 (425)
283 1gku_B Reverse gyrase, TOP-RG; 37.9 50 0.0017 43.7 8.3 93 879-975 80-181 (1054)
284 3hr8_A Protein RECA; alpha and 37.8 64 0.0022 37.0 8.2 40 578-620 64-103 (356)
285 3fe2_A Probable ATP-dependent 37.6 1.2E+02 0.004 32.1 9.9 89 880-975 76-182 (242)
286 1qvr_A CLPB protein; coiled co 37.3 24 0.00082 45.7 5.0 25 577-601 590-614 (854)
287 3kht_A Response regulator; PSI 37.0 51 0.0018 31.3 6.3 82 633-716 7-91 (144)
288 3pxg_A Negative regulator of g 36.7 38 0.0013 40.4 6.3 28 574-601 200-227 (468)
289 3kto_A Response regulator rece 36.7 89 0.003 29.3 8.0 81 632-716 7-90 (136)
290 3qxc_A Dethiobiotin synthetase 36.3 21 0.00072 38.7 3.6 25 579-603 26-50 (242)
291 2z43_A DNA repair and recombin 35.6 1.1E+02 0.0038 34.2 9.8 55 563-617 94-152 (324)
292 3of5_A Dethiobiotin synthetase 35.5 26 0.00087 37.5 4.1 25 579-603 9-33 (228)
293 3eod_A Protein HNR; response r 35.5 97 0.0033 28.6 8.0 42 674-716 48-89 (130)
294 3cwq_A Para family chromosome 35.5 57 0.002 34.0 6.8 42 579-624 5-48 (209)
295 3zyw_A Glutaredoxin-3; metal b 35.0 79 0.0027 29.4 7.0 58 898-957 15-78 (111)
296 3lua_A Response regulator rece 34.2 81 0.0028 29.6 7.3 81 632-716 5-91 (140)
297 2pl3_A Probable ATP-dependent 33.6 1.3E+02 0.0043 31.6 9.4 89 880-975 72-177 (236)
298 3fgn_A Dethiobiotin synthetase 33.2 25 0.00085 38.3 3.6 25 579-603 31-55 (251)
299 3iuy_A Probable ATP-dependent 33.1 82 0.0028 32.9 7.7 89 880-975 67-173 (228)
300 1u6t_A SH3 domain-binding glut 33.0 52 0.0018 31.5 5.3 45 901-945 2-53 (121)
301 2v1x_A ATP-dependent DNA helic 32.7 80 0.0027 38.8 8.5 77 880-959 69-145 (591)
302 3gx8_A Monothiol glutaredoxin- 32.6 1.2E+02 0.0041 28.7 7.9 47 898-944 15-70 (121)
303 2jgn_A DBX, DDX3, ATP-dependen 32.5 97 0.0033 31.5 7.9 56 605-662 45-103 (185)
304 3i5x_A ATP-dependent RNA helic 32.5 1.4E+02 0.0047 36.1 10.6 77 588-664 321-401 (563)
305 1u0j_A DNA replication protein 32.3 49 0.0017 36.3 5.7 33 566-598 91-127 (267)
306 3cmw_A Protein RECA, recombina 32.3 87 0.003 43.3 9.3 46 573-621 730-775 (1706)
307 1k68_A Phytochrome response re 32.3 90 0.0031 29.0 7.2 40 676-716 54-95 (140)
308 3snk_A Response regulator CHEY 32.3 88 0.003 29.2 7.1 81 633-716 16-97 (135)
309 3ly5_A ATP-dependent RNA helic 32.0 1.6E+02 0.0056 31.6 10.1 89 880-975 101-207 (262)
310 2qxy_A Response regulator; reg 31.8 83 0.0029 29.6 6.9 79 632-716 5-85 (142)
311 1qde_A EIF4A, translation init 31.5 77 0.0026 32.9 7.1 89 880-975 61-161 (224)
312 2yan_A Glutaredoxin-3; oxidore 31.5 96 0.0033 28.2 6.9 47 899-945 17-69 (105)
313 2hjv_A ATP-dependent RNA helic 31.0 1.5E+02 0.0051 29.2 8.8 55 606-662 35-92 (163)
314 3cmu_A Protein RECA, recombina 30.9 52 0.0018 46.2 6.8 57 563-622 718-776 (2050)
315 1oyw_A RECQ helicase, ATP-depe 30.9 68 0.0023 38.8 7.3 76 880-960 50-125 (523)
316 3sqw_A ATP-dependent RNA helic 30.7 1.4E+02 0.0049 36.2 10.4 73 592-664 274-350 (579)
317 3eme_A Rhodanese-like domain p 30.6 33 0.0011 31.3 3.5 38 896-933 54-91 (103)
318 1xti_A Probable ATP-dependent 30.5 1.5E+02 0.0052 33.4 10.0 91 880-975 55-158 (391)
319 3hix_A ALR3790 protein; rhodan 30.4 43 0.0015 30.8 4.3 38 896-933 50-88 (106)
320 3hzh_A Chemotaxis response reg 30.2 76 0.0026 30.8 6.4 80 633-716 38-121 (157)
321 3hv2_A Response regulator/HD d 29.7 97 0.0033 29.7 7.1 80 633-716 16-96 (153)
322 3foj_A Uncharacterized protein 29.5 36 0.0012 30.9 3.5 37 897-933 55-91 (100)
323 2j48_A Two-component sensor ki 29.2 32 0.0011 31.0 3.2 14 979-992 102-115 (119)
324 2r62_A Cell division protease 28.7 33 0.0011 37.1 3.6 25 575-599 44-68 (268)
325 1wik_A Thioredoxin-like protei 28.7 1.1E+02 0.0036 28.2 6.7 47 899-945 15-67 (109)
326 2pt7_A CAG-ALFA; ATPase, prote 28.6 3E+02 0.01 30.8 11.8 21 572-592 168-188 (330)
327 2gxq_A Heat resistant RNA depe 28.5 1.9E+02 0.0065 29.3 9.5 89 880-975 48-150 (207)
328 1wv9_A Rhodanese homolog TT165 28.4 33 0.0011 30.7 3.0 35 899-933 54-88 (94)
329 2ck3_A ATP synthase subunit al 28.4 1.5E+02 0.005 35.6 9.3 67 562-629 150-224 (510)
330 3i42_A Response regulator rece 28.0 1.3E+02 0.0046 27.4 7.5 84 633-719 5-90 (127)
331 3nbx_X ATPase RAVA; AAA+ ATPas 27.3 31 0.0011 41.6 3.3 36 563-598 29-64 (500)
332 2rjn_A Response regulator rece 27.0 1.2E+02 0.0041 29.0 7.2 81 632-716 8-89 (154)
333 1tmy_A CHEY protein, TMY; chem 26.9 1.1E+02 0.0036 27.7 6.5 80 633-716 4-85 (120)
334 3jte_A Response regulator rece 26.7 1.8E+02 0.0061 27.2 8.3 80 633-716 5-87 (143)
335 3eaq_A Heat resistant RNA depe 26.6 1.6E+02 0.0056 30.5 8.6 55 606-662 31-88 (212)
336 2wem_A Glutaredoxin-related pr 26.6 1.2E+02 0.0041 28.7 6.7 57 899-957 20-83 (118)
337 2wci_A Glutaredoxin-4; redox-a 26.5 1E+02 0.0036 29.8 6.4 46 900-945 36-87 (135)
338 1t5i_A C_terminal domain of A 26.4 2.1E+02 0.007 28.5 9.0 55 606-662 31-88 (172)
339 3f6c_A Positive transcription 26.4 1.3E+02 0.0043 27.9 7.0 84 633-720 3-88 (134)
340 2j37_W Signal recognition part 25.9 2.1E+02 0.0071 34.3 10.2 34 578-614 104-137 (504)
341 1byi_A Dethiobiotin synthase; 25.8 66 0.0023 33.5 5.3 33 579-614 6-38 (224)
342 4ehx_A Tetraacyldisaccharide 4 25.8 1.2E+02 0.0042 33.9 7.7 16 585-600 48-63 (315)
343 3ilh_A Two component response 25.7 1.4E+02 0.0048 27.9 7.4 39 676-716 59-102 (146)
344 2i1q_A DNA repair and recombin 25.4 1.5E+02 0.005 33.1 8.4 36 563-598 85-121 (322)
345 3a10_A Response regulator; pho 25.3 60 0.002 29.3 4.3 25 900-924 3-27 (116)
346 3cg4_A Response regulator rece 24.9 1.3E+02 0.0045 28.0 6.9 55 898-960 7-61 (142)
347 1fuk_A Eukaryotic initiation f 24.9 2.7E+02 0.0091 27.3 9.5 55 606-662 30-87 (165)
348 3dmn_A Putative DNA helicase; 24.9 2.3E+02 0.008 28.3 9.1 78 885-980 48-125 (174)
349 2rb4_A ATP-dependent RNA helic 24.8 1.7E+02 0.0058 29.1 8.1 55 606-662 34-91 (175)
350 3iwh_A Rhodanese-like domain p 24.8 43 0.0015 30.9 3.0 37 897-933 55-91 (103)
351 1qkk_A DCTD, C4-dicarboxylate 24.8 1.4E+02 0.0049 28.4 7.3 80 633-716 5-85 (155)
352 3tbk_A RIG-I helicase domain; 24.7 68 0.0023 38.4 5.8 90 880-975 29-133 (555)
353 3klo_A Transcriptional regulat 24.6 1.6E+02 0.0053 30.5 8.0 83 632-716 8-93 (225)
354 2b4a_A BH3024; flavodoxin-like 24.2 1.5E+02 0.0051 27.6 7.1 86 628-716 12-99 (138)
355 2iut_A DNA translocase FTSK; n 23.7 78 0.0027 38.6 5.9 42 575-616 214-256 (574)
356 1g3q_A MIND ATPase, cell divis 23.7 71 0.0024 33.6 5.1 33 579-614 7-39 (237)
357 2wul_A Glutaredoxin related pr 23.7 2.2E+02 0.0077 26.9 7.9 47 899-945 20-73 (118)
358 2qr3_A Two-component system re 23.7 1.1E+02 0.0039 28.4 6.2 81 633-716 5-90 (140)
359 3eqz_A Response regulator; str 23.4 93 0.0032 28.7 5.4 75 923-997 47-127 (135)
360 1tq1_A AT5G66040, senescence-a 23.3 48 0.0016 31.7 3.3 38 896-933 80-118 (129)
361 3rqi_A Response regulator prot 23.2 1.2E+02 0.004 30.4 6.5 80 632-716 8-89 (184)
362 4a2p_A RIG-I, retinoic acid in 23.1 88 0.003 37.5 6.4 90 880-975 32-136 (556)
363 3hdg_A Uncharacterized protein 23.0 1.9E+02 0.0064 26.8 7.6 40 676-716 50-89 (137)
364 2p6n_A ATP-dependent RNA helic 22.6 2.2E+02 0.0075 29.0 8.5 55 607-663 55-112 (191)
365 3grc_A Sensor protein, kinase; 22.5 1.5E+02 0.005 27.7 6.7 83 630-715 5-89 (140)
366 3ilm_A ALR3790 protein; rhodan 22.3 72 0.0025 31.1 4.4 38 896-933 54-92 (141)
367 3e70_C DPA, signal recognition 22.3 1.7E+02 0.0058 33.0 8.0 33 578-613 132-164 (328)
368 1dbw_A Transcriptional regulat 22.2 2E+02 0.0068 26.2 7.5 80 633-716 5-85 (126)
369 4a2q_A RIG-I, retinoic acid in 22.2 99 0.0034 39.5 6.8 59 880-938 273-340 (797)
370 1fuu_A Yeast initiation factor 22.2 2.6E+02 0.0089 31.4 9.9 90 880-976 68-169 (394)
371 2oap_1 GSPE-2, type II secreti 22.1 77 0.0026 38.2 5.4 39 555-596 243-281 (511)
372 2qe7_A ATP synthase subunit al 22.1 1.4E+02 0.0049 35.6 7.6 63 562-629 150-216 (502)
373 3heb_A Response regulator rece 22.0 1.3E+02 0.0046 28.6 6.4 40 675-716 57-99 (152)
374 4ag6_A VIRB4 ATPase, type IV s 22.0 1.1E+02 0.0036 35.3 6.5 60 883-945 282-347 (392)
375 1hyq_A MIND, cell division inh 21.9 84 0.0029 33.7 5.3 33 578-613 6-38 (263)
376 3flh_A Uncharacterized protein 21.9 69 0.0024 30.3 4.1 37 897-933 70-108 (124)
377 3i32_A Heat resistant RNA depe 21.8 2.1E+02 0.0071 31.8 8.6 55 606-662 28-85 (300)
378 3ug7_A Arsenical pump-driving 21.7 1.1E+02 0.0038 34.7 6.5 33 578-613 29-61 (349)
379 4akg_A Glutathione S-transfera 21.7 1E+02 0.0035 44.8 7.2 61 557-617 905-965 (2695)
380 3nhm_A Response regulator; pro 21.6 1.2E+02 0.0041 28.0 5.8 45 897-945 26-70 (133)
381 3a10_A Response regulator; pho 21.5 1.6E+02 0.0054 26.3 6.5 39 676-716 44-83 (116)
382 2jtq_A Phage shock protein E; 21.3 91 0.0031 27.0 4.5 37 896-933 39-76 (85)
383 1gmx_A GLPE protein; transfera 21.2 83 0.0028 28.8 4.3 39 896-934 56-95 (108)
384 3q9l_A Septum site-determining 21.1 82 0.0028 33.5 5.0 32 579-613 7-38 (260)
385 3trf_A Shikimate kinase, SK; a 21.0 63 0.0022 32.5 3.8 25 575-599 5-29 (185)
386 1e9r_A Conjugal transfer prote 20.9 72 0.0025 37.4 4.8 41 575-618 53-93 (437)
387 3oaa_A ATP synthase subunit al 20.8 2.2E+02 0.0075 34.0 8.7 63 562-629 150-216 (513)
388 3i42_A Response regulator rece 20.7 47 0.0016 30.7 2.6 93 898-996 27-123 (127)
389 1j8m_F SRP54, signal recogniti 20.5 1.3E+02 0.0044 33.4 6.5 34 579-615 102-135 (297)
390 1g41_A Heat shock protein HSLU 20.5 1.1E+02 0.0037 36.2 6.1 25 575-599 50-74 (444)
391 2rdm_A Response regulator rece 20.5 2.1E+02 0.0072 26.1 7.3 81 633-716 7-89 (132)
392 1t1v_A SH3BGRL3, SH3 domain-bi 20.5 1.5E+02 0.005 26.2 5.8 57 900-956 3-66 (93)
393 3cg4_A Response regulator rece 20.4 1.7E+02 0.006 27.2 6.8 40 676-716 50-91 (142)
394 2fsx_A RV0390, COG0607: rhodan 20.4 81 0.0028 30.8 4.3 38 896-933 78-116 (148)
395 3t8y_A CHEB, chemotaxis respon 20.1 1.6E+02 0.0054 28.7 6.6 39 675-716 69-108 (164)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-77 Score=773.99 Aligned_cols=497 Identities=45% Similarity=0.776 Sum_probs=411.8
Q ss_pred hhhhhhcccccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 542 HEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 542 ~e~~~~qp~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
.+.+..+|+...+++|||||++||+||+..+.++.+|||||+||+|||+++|+++.+++......+|+|||||.+++.||
T Consensus 222 ~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW 301 (800)
T 3mwy_W 222 FEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAW 301 (800)
T ss_dssp CCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHH
T ss_pred ccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHH
Confidence 34566788888899999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred HHHHHHHcCCCcEEEecCChhHHHHHHHHh----------hccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC
Q psy1544 622 SLEFERWAPSVNVVAYKGSPHLRKTLQAQM----------KASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 622 ~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~----------~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn 691 (1331)
..||.+|+|++.+++|+|....+..+.... ....++|+||||+++.++...+..+.|++|||||||++||
T Consensus 302 ~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 302 LDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCC
T ss_pred HHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcC
Confidence 999999999999999999988776655432 3457899999999999998889999999999999999999
Q ss_pred cchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 692 HHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 692 ~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
..++.++++..+ .+.+||+|||||++|++.|||++++||.|+.|.....|.... ........+..|
T Consensus 382 ~~s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~-------------~~~~~~~~~~~L 447 (800)
T 3mwy_W 382 AESSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN-------------QDEEQEEYIHDL 447 (800)
T ss_dssp SSSHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C-------------CTTHHHHHHHHH
T ss_pred chhHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc-------------cchhHHHHHHHH
Confidence 999999999876 889999999999999999999999999999998766553111 112233457889
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
+.+++||++||++.++...||++.+.++.|.|++.|+.+|+.+........... ..+....+++.+++||++|+|
T Consensus 448 ~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~-----~~~~~~~~l~~l~~Lrk~~~h 522 (800)
T 3mwy_W 448 HRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG-----AKGGHFSLLNIMNELKKASNH 522 (800)
T ss_dssp HHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHC
T ss_pred HHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----cccchhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999887654433221 122344688999999999999
Q ss_pred ccchhhhHhhhhhccCCCCccc---CCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy1544 852 PFMFQNIEEKFSDHVGGSGIVS---GPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRL 928 (1331)
Q Consensus 852 p~l~~~~~~~~~~~~~~~~~~~---~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~i 928 (1331)
|+++...........+...... ...++..|+|+.+|.++|..+...|+||||||+++.++++|+.+|...|+.+.++
T Consensus 523 p~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i 602 (800)
T 3mwy_W 523 PYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRL 602 (800)
T ss_dssp GGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEE
T ss_pred hhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEE
Confidence 9999776655433322111100 1124567999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEee
Q psy1544 929 DGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMT 1008 (1331)
Q Consensus 929 dG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~ 1008 (1331)
+|+++..+|..+++.|++++++.+|||+||++||+||||++|++||+||++|||..+.||+||+||+||+++|+||+|++
T Consensus 603 ~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~ 682 (800)
T 3mwy_W 603 DGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVS 682 (800)
T ss_dssp STTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEec
Confidence 99999999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCC---hhHHHHHHHHHhccCC
Q psy1544 1009 VNSVEERILAAARYKLNMDEKVIQAGMFDQKST---GSERHQFLQTILHQDD 1057 (1331)
Q Consensus 1009 ~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~---~~e~~~~l~~il~~~~ 1057 (1331)
.+|+|++|++++..|+.+...||+.|..+.... .......|..||....
T Consensus 683 ~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~ 734 (800)
T 3mwy_W 683 KDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGA 734 (800)
T ss_dssp TTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcch
Confidence 999999999999999999999999887664321 1112334667776544
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-71 Score=699.70 Aligned_cols=495 Identities=29% Similarity=0.464 Sum_probs=403.9
Q ss_pred ccCCccHHHHHHHHHHHHHh-----cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC----CCcEEEEeCCccHHHHHH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLF-----NNNLNGILADEMGLGKTIQTIALITYLMEKKKV----NGPFLIIVPLSTLSNWSL 623 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~-----~~~~~gILADemGlGKTi~ai~li~~l~~~~~~----~~p~LIV~P~sll~qW~~ 623 (1331)
+.+.|||||.+||.||+..+ .++.||||||+||+|||+++|+++..++..... .+++|||||.+++.||..
T Consensus 52 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~ 131 (644)
T 1z3i_X 52 LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYN 131 (644)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHH
Confidence 46789999999999999876 466789999999999999999999998876543 345999999999999999
Q ss_pred HHHHHcCC-CcEEEecC-ChhHHH-HHHHHhhc----cCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHH
Q psy1544 624 EFERWAPS-VNVVAYKG-SPHLRK-TLQAQMKA----SKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKL 696 (1331)
Q Consensus 624 E~~k~~p~-~~v~~~~g-~~~~r~-~~~~~~~~----~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~ 696 (1331)
||.+|++. +.++.++| ....+. .+...... ..++|+||||+.+..+...+....|++|||||||++||..++.
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~ 211 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQT 211 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHH
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHH
Confidence 99999875 55555554 433222 22222221 2478999999999999988988999999999999999999999
Q ss_pred HHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccC--HHHHHHHHHHHHHH
Q psy1544 697 THILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELN--EEETILIIRRLHKV 774 (1331)
Q Consensus 697 ~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~--~~~~~~~~~rL~~~ 774 (1331)
++++..+ .+.+||+|||||++|++.|||++++|+.|+.+++...|.++|..|+.......... .......+..|+.+
T Consensus 212 ~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 212 YLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHH
Confidence 9999887 78999999999999999999999999999999999999999998875443222111 22334567789999
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccc
Q psy1544 775 LRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFM 854 (1331)
Q Consensus 775 L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l 854 (1331)
+.+|++||++.++...||++.+.++.|.|++.|+.+|+.+........... ........+..++.||++|+||.+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~-----~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ-----TGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC-----TTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999999999999999876543321110 112334567889999999999998
Q ss_pred hhhhHhhhhhccC------CCCcccCCccccccchhHHHHHhhhhhhc-CCCeeEEEeccHHHHHHHHHHHHhcCCeEEE
Q psy1544 855 FQNIEEKFSDHVG------GSGIVSGPDLYRVSGKFELLDRILPKLKS-TGHRVLLFCQMTQLMNILEDYFSYRGFKYMR 927 (1331)
Q Consensus 855 ~~~~~~~~~~~~~------~~~~~~~~~l~~~s~K~~~L~~lL~~l~~-~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~ 927 (1331)
+........+... .............|+|+.+|..++..+.. .++|+||||+++.++++|+.+|...|+.+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 7532111000000 00111112234569999999999998864 5899999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEe
Q psy1544 928 LDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLM 1007 (1331)
Q Consensus 928 idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli 1007 (1331)
+||+++..+|..++++|++++...+|||+||++||+||||++|++||+||++|||..+.||+||+||+||+++|+||+|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999987766779999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHhcCcccCcCChhHHHHHHHHHhccC
Q psy1544 1008 TVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQD 1056 (1331)
Q Consensus 1008 ~~~TiEE~I~~~~~~K~~l~~~vi~~g~~~~~~~~~e~~~~l~~il~~~ 1056 (1331)
+.+|+|++|++++..|..++..|++++......... +.|..++..+
T Consensus 526 ~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~---~~l~~Lf~~~ 571 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSL---GELRELFSLN 571 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCH---HHHHHHTCCC
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCH---HHHHHHhCCC
Confidence 999999999999999999999999876543222221 2355666544
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.7e-66 Score=638.07 Aligned_cols=445 Identities=31% Similarity=0.574 Sum_probs=384.5
Q ss_pred cccccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 550 SILVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 550 ~~l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
+..++.+|+|||.+|+.||...+..+.+|||||+||+|||+++++++..+...+ ..+++|||||.+++.||..||.+|+
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~~l~~qw~~e~~~~~ 109 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELTPSLVICPLSVLKNWEEELSKFA 109 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT-CCSSEEEEECSTTHHHHHHHHHHHC
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-CCCCEEEEccHHHHHHHHHHHHHHC
Confidence 344678999999999999998888889999999999999999999999887553 3567999999999999999999999
Q ss_pred CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCce
Q psy1544 630 PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 630 p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~r 709 (1331)
|+..+.+++|.... .....++|+|+||+.+.++.. +....|++|||||||+++|..++.++++..+ .+.++
T Consensus 110 ~~~~v~~~~g~~~~-------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~ 180 (500)
T 1z63_A 110 PHLRFAVFHEDRSK-------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYR 180 (500)
T ss_dssp TTSCEEECSSSTTS-------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEE
T ss_pred CCceEEEEecCchh-------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcE
Confidence 99999999887521 234568999999999987654 6677999999999999999999999999876 67899
Q ss_pred eeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy1544 710 LLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE--V 787 (1331)
Q Consensus 710 llLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~--v 787 (1331)
|+|||||++|++.|||++++|+.|+.+++...|..+|..++.... ......|+.++.++++||++.+ +
T Consensus 181 l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~----------~~~~~~l~~~l~~~~lrr~k~~~~~ 250 (500)
T 1z63_A 181 IALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD----------NMAKEELKAIISPFILRRTKYDKAI 250 (500)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC----------HHHHHHHHHHHTTTEECCCTTCHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc----------HHHHHHHHHHHhhHeeeecccccch
Confidence 999999999999999999999999999999999999888765422 1235678999999999999864 6
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
...||++.+.++.|.|++.|+.+|+.+.......... ..+......++..++.||++|+||.++..
T Consensus 251 ~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~lr~~~~~p~l~~~---------- 316 (500)
T 1z63_A 251 INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDS----VTGIKRKGMILSTLLKLKQIVDHPALLKG---------- 316 (500)
T ss_dssp HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTT----CCTHHHHHHHHHHHHHHHHHTTCTHHHHC----------
T ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHhCCHHHhcC----------
Confidence 7789999999999999999999999887654332211 11222345677889999999999987642
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHHhcC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-GFKYMRLDGTTKAEDRGDLLKKFNA 946 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g~~~~~idG~~~~~eR~~~i~~Fn~ 946 (1331)
.......++|+..|.+++..+...|+|+||||+++.+++.|...|... |+.+.+++|+++..+|..+++.|++
T Consensus 317 ------~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 317 ------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 390 (500)
T ss_dssp ------SCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH
T ss_pred ------ccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcC
Confidence 123456789999999999999999999999999999999999999986 9999999999999999999999985
Q ss_pred CCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Q psy1544 947 PDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNM 1026 (1331)
Q Consensus 947 ~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l 1026 (1331)
+ ..+.|+|+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..+
T Consensus 391 ~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 391 N-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp C-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred C-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 3 245678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCc
Q psy1544 1027 DEKVIQAGM 1035 (1331)
Q Consensus 1027 ~~~vi~~g~ 1035 (1331)
+..+++++.
T Consensus 470 ~~~~~~~~~ 478 (500)
T 1z63_A 470 FKDIISSGD 478 (500)
T ss_dssp SSSGGGSTT
T ss_pred HHHHhhcCc
Confidence 999998764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.2e-48 Score=515.38 Aligned_cols=440 Identities=19% Similarity=0.239 Sum_probs=326.2
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
..+|+|||.+++.|++.. .+.++||||+||+|||++|++++..++..+. .+++|||||++++.||..||.+|+ +..
T Consensus 151 ~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCHHHHHHHHHHHHHHh-CCC
Confidence 468999999999999873 3567899999999999999999998887654 456999999999999999999988 677
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc---ccccCccEEEEeCCcccCCcchH---HHHHHHHhc-cC
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP---LAKLHWKYMIIDEGHRMKNHHCK---LTHILNTFY-VA 706 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaHrikn~~sk---~~~~l~~~~-~~ 706 (1331)
+.+|+|................++|+|+||+.+.++... +....|++|||||||+++|..+. .++.+..+. .+
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 888877643332211112334679999999999876433 55668999999999999987754 366666553 56
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhcccccc--------c------ccc----cc---------
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATT--------G------EKV----EL--------- 759 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~--------~------~~~----~~--------- 759 (1331)
+++|+|||||++|++.|+|++++|+.|..|++...|..++....... + ... .+
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 78999999999999999999999999999999999876653211000 0 000 00
Q ss_pred ---C--HHH-HHHHHHHHHHHHH-----HHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccc
Q psy1544 760 ---N--EEE-TILIIRRLHKVLR-----PFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKG 828 (1331)
Q Consensus 760 ---~--~~~-~~~~~~rL~~~L~-----p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~ 828 (1331)
. .+. .......+..++. .+++|+++..+ ..+|.+....+.+.+++..+.+|........ ..
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~----~~--- 458 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGA----RK--- 458 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTC----CS---
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhh----hh---
Confidence 0 000 0000111111221 12233333333 3688888899999999999988875332210 00
Q ss_pred cCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccH
Q psy1544 829 KQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMT 908 (1331)
Q Consensus 829 ~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~ 908 (1331)
. . .... . .+.+|.... ..+. ......+..+.|+..|.+++.. ..+.|+||||+++
T Consensus 459 -~--~-~~~~-------~-~~l~pe~~~-------~~l~----~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~ 513 (968)
T 3dmq_A 459 -S--A-EDRA-------R-DMLYPERIY-------QEFE----GDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKA 513 (968)
T ss_dssp -S--G-GGGT-------H-HHHCSGGGT-------TTTT----SSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSST
T ss_pred -h--h-HHHH-------h-hhcChHHHH-------HHhh----hhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcH
Confidence 0 0 0000 0 111221110 0010 0122355678999999999987 5678999999999
Q ss_pred HHHHHHHHHHHh-cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccc
Q psy1544 909 QLMNILEDYFSY-RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 987 (1331)
Q Consensus 909 ~~ld~L~~~L~~-~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~Q 987 (1331)
.+++.|...|.. .|+++..+||+++..+|..+++.|+++++.+.| ||||+++++|||++.|++||+||++||+..+.|
T Consensus 514 ~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q 592 (968)
T 3dmq_A 514 ATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQ 592 (968)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHH
Confidence 999999999995 599999999999999999999999975534555 789999999999999999999999999999999
Q ss_pred ccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHH
Q psy1544 988 AQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVI 1031 (1331)
Q Consensus 988 aiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi 1031 (1331)
++||++|+||++.|.||++++.+|+|++|+..+..|.++....+
T Consensus 593 ~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~ 636 (968)
T 3dmq_A 593 RIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTC 636 (968)
T ss_dssp HHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCC
T ss_pred HhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCC
Confidence 99999999999999999999999999999999999887765544
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-43 Score=432.73 Aligned_cols=447 Identities=19% Similarity=0.222 Sum_probs=289.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHc--CC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWA--PS 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~--p~ 631 (1331)
.+|+|||.+++.|++. + ++||+++||+|||++++.++..++. ...+++|||||+ +++.||..+|.+|+ +.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 4799999999999885 3 8999999999999999999888766 335679999998 67799999999998 55
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcch--HHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHC--KLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~s--k~~~~l~~~~~~~ 707 (1331)
..+.+++|......... ....++|+|+||+.+.... ..+....|++|||||||++++..+ .+...+.......
T Consensus 81 ~~v~~~~g~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK---AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GGEEEECSCSCHHHHHH---HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred hheEEeeCCcchhhhhh---hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 68889988865443211 1235799999999998753 345566899999999999987543 2233333334578
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCC---CChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIF---KSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 784 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~---~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k 784 (1331)
++|+|||||. ++..+++.+++++..... .....+...+..+............ ....+...+.+++.++.+
T Consensus 158 ~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 158 LVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPE-----IYKEVRKLLREMLRDALK 231 (494)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCH-----HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcH-----HHHHHHHHHHHHHHHHHH
Confidence 8999999999 777788877777754322 1111111111111111011111222 245677778888888888
Q ss_pred HHHhhhCCCceEEEEEcCCCHHH-----HHHHHHHHhhhhhcccCcc-----------cccCCCcchHHHHHHHHHHHHh
Q psy1544 785 KEVESQLPDKVEYIIKCDMSGLQ-----KVLYRHMHTKGILLTDGSE-----------KGKQGKGGAKALMNTIVQLRKL 848 (1331)
Q Consensus 785 ~~v~~~LP~k~e~~v~~~ls~~q-----~~lY~~i~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~l~~Lrk~ 848 (1331)
......+..... ..++... ..++..+............ .......+...+...+..+...
T Consensus 232 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (494)
T 1wp9_A 232 PLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEE 307 (494)
T ss_dssp HHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 666554432221 1222221 1111111100000000000 0000000111122222223222
Q ss_pred cCCccchhhhHhhhhhccCCCC---cccCCccccccchhHHHHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhcCC
Q psy1544 849 CNHPFMFQNIEEKFSDHVGGSG---IVSGPDLYRVSGKFELLDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSYRGF 923 (1331)
Q Consensus 849 ~~hp~l~~~~~~~~~~~~~~~~---~~~~~~l~~~s~K~~~L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~g~ 923 (1331)
+.|..... ....+.+...... ..........++|+..|.++|..+. ..++|+||||+++.+++.|..+|...|+
T Consensus 308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~ 386 (494)
T 1wp9_A 308 AKAGSTKA-SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386 (494)
T ss_dssp HHTTCCHH-HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hccccchh-hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC
Confidence 22211000 0000000000000 0000001145789999999999876 5788999999999999999999999999
Q ss_pred eEEEEcC--------CCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCcccccccccccccc
Q psy1544 924 KYMRLDG--------TTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRI 995 (1331)
Q Consensus 924 ~~~~idG--------~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~Ri 995 (1331)
.+..++| +++..+|..+++.|+++. +. +||||+++|+||||++|++||+||++||+..+.||+||+||.
T Consensus 387 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGE--FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp CEEEECCSSCC-------CCHHHHHHHHHHHTS--CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred CcEEEeccccccccccCCHHHHHHHHHHHhcCC--ce-EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 9999999 999999999999999644 34 589999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHH
Q psy1544 996 GQKNEVRVLRLMTVNSVEERILAAARYKLNMDE 1028 (1331)
Q Consensus 996 GQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~ 1028 (1331)
|+ +.+|+|++.+|+|+.++.++..|..+..
T Consensus 464 g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 464 MP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp CC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 98 8999999999999999999998877653
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.2e-39 Score=400.70 Aligned_cols=378 Identities=16% Similarity=0.215 Sum_probs=255.6
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~ 631 (1331)
.+.+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||+ .++.||..+|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 356899999999998774 4569999999999999998888765 4569999999 7779999999995 5
Q ss_pred Cc-EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 632 VN-VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 632 ~~-v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
.. +.+++|... ...+|+|+||+.+......+. ..|++|||||||++.+.... .+.....+.++|
T Consensus 158 ~~~v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~---~~~~~~~~~~~l 222 (472)
T 2fwr_A 158 EEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV---QIAQMSIAPFRL 222 (472)
T ss_dssp GGGEEEBSSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH---HHHHTCCCSEEE
T ss_pred CcceEEECCCcC-----------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH---HHHHhcCCCeEE
Confidence 66 888887643 246899999999887654332 35999999999999987643 233445788999
Q ss_pred eeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Q psy1544 711 LLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE-S 789 (1331)
Q Consensus 711 lLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~-~ 789 (1331)
+|||||.+++..+. .+..++.. .+.++...++. .
T Consensus 223 ~lSATp~~~~~~~~----------------~l~~~~~~-----------------------------~~~~~~~~~l~~~ 257 (472)
T 2fwr_A 223 GLTATFEREDGRHE----------------ILKEVVGG-----------------------------KVFELFPDSLAGK 257 (472)
T ss_dssp EEESCCCCTTSGGG----------------SHHHHTCC-----------------------------EEEECCHHHHTSC
T ss_pred EEecCccCCCCHHH----------------HHHHHhCC-----------------------------eEeecCHHHHhcC
Confidence 99999987653220 01111111 11111112222 2
Q ss_pred hCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCC
Q psy1544 790 QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGS 869 (1331)
Q Consensus 790 ~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 869 (1331)
.+++.....+.+++++.++..|..+.......................+.. .....+..........
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------- 324 (472)
T 2fwr_A 258 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM------ASGYDERAYEALRAWE------- 324 (472)
T ss_dssp CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT------TTCCSSSSSTTTHHHH-------
T ss_pred cCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH------HhccCHHHHHHHHHHH-------
Confidence 367777778889999999998876544332221111000000000000000 0000000000000000
Q ss_pred CcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q psy1544 870 GIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDS 949 (1331)
Q Consensus 870 ~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~ 949 (1331)
.........+.|+..|.+++.. ..++++||||+++.+++.|...|. +..++|+++..+|..+++.|+++
T Consensus 325 --~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-- 393 (472)
T 2fwr_A 325 --EARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTG-- 393 (472)
T ss_dssp --HHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS--
T ss_pred --HHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCC--
Confidence 0000012346799999999987 467899999999999999999885 55789999999999999999864
Q ss_pred CceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCC-CceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q psy1544 950 EYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK-NEVRVLRLMTVNSVEERILAAARYKLNMD 1027 (1331)
Q Consensus 950 ~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~-k~V~V~rli~~~TiEE~I~~~~~~K~~l~ 1027 (1331)
.+. +|++|+++++|||++.+++||+||++||+..+.|++||++|.|+. +.|.||.|++.+|+|+.+..+.+.|..++
T Consensus 394 ~~~-vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 394 RFR-AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp SCS-BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CCC-EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 344 489999999999999999999999999999999999999999998 78999999999999999999888776653
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=4.6e-39 Score=364.49 Aligned_cols=236 Identities=28% Similarity=0.463 Sum_probs=181.7
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
-+||+|++|..+||++.+.+++|+||+.|+.+|+.+........... .+......+++.+++||++|+||+++..
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~Lrq~~~hP~l~~~- 87 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV----TGIKRKGMILSTLLKLKQIVDHPALLKG- 87 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHHHHTTCTHHHHC-
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHcCCHHHhcC-
Confidence 47999999999999999999999999999999999887654332211 1111234678899999999999998752
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-CCeEEEEcCCCCHHHH
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR-GFKYMRLDGTTKAEDR 937 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~-g~~~~~idG~~~~~eR 937 (1331)
...+...++|+..|.++|..+...|+|+||||+++.+++.|+.+|... |+.+.+++|+++..+|
T Consensus 88 ---------------~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 88 ---------------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKER 152 (271)
T ss_dssp ---------------SCCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHH
T ss_pred ---------------CccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHH
Confidence 113456799999999999999889999999999999999999999985 9999999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHH
Q psy1544 938 GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERIL 1017 (1331)
Q Consensus 938 ~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~ 1017 (1331)
..+++.|+++ ..+.|||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|++|+
T Consensus 153 ~~~i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~ 231 (271)
T 1z5z_A 153 DDIISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKID 231 (271)
T ss_dssp HHHHHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHH
T ss_pred HHHHHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHH
Confidence 9999999964 246689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCc
Q psy1544 1018 AAARYKLNMDEKVIQAGM 1035 (1331)
Q Consensus 1018 ~~~~~K~~l~~~vi~~g~ 1035 (1331)
+++..|..+++.+++++.
T Consensus 232 ~~~~~K~~l~~~~~~~~~ 249 (271)
T 1z5z_A 232 QLLAFKRSLFKDIISSGD 249 (271)
T ss_dssp HHHHHCHHHHTTGGGGTT
T ss_pred HHHHHHHHHHHHHHccCc
Confidence 999999999999998764
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.3e-36 Score=378.62 Aligned_cols=453 Identities=15% Similarity=0.195 Sum_probs=230.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCC-ccHHHHHHHHHHHcC-
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--NGPFLIIVPL-STLSNWSLEFERWAP- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p- 630 (1331)
.+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||+ .++.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999974 6789999999999999998888777665432 4569999999 566999999999987
Q ss_pred -CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--Ccc-cccCccEEEEeCCcccCCcchHHHHHHHHhc--
Q psy1544 631 -SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPL-AKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-- 704 (1331)
Q Consensus 631 -~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l-~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-- 704 (1331)
++.+..++|.......... ....++|+|+|++.+.... ..+ ....|++|||||||++.+... ....+..+.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHHH--HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHH--hhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHHh
Confidence 7888888887643322221 1235799999999998643 223 344789999999999987765 222222222
Q ss_pred ------cCCceeeeccCCCCCChHH-------HHHHHhhhcCCC----CCChhHHHHHhhccccccccccccCHHH----
Q psy1544 705 ------VAPHRLLLTGTPLQNKLPE-------LWALLNFLLPSI----FKSVSTFEQWFNAPFATTGEKVELNEEE---- 763 (1331)
Q Consensus 705 ------~~~~rllLTgTPlqN~l~E-------L~~ll~fL~p~~----~~~~~~F~~~f~~p~~~~~~~~~~~~~~---- 763 (1331)
...++|+|||||.+++..+ +..+...+.... ......+..++..+..............
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 2367899999998876433 333334443321 2234455555554432211110000111
Q ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhc
Q psy1544 764 TILIIRRLHKVLRP----------------------FLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILL 821 (1331)
Q Consensus 764 ~~~~~~rL~~~L~p----------------------~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~ 821 (1331)
.......++..+.. ++....+......++ ....+..+|..+......+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l 308 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----------DKEEESRICRALFICTEHL 308 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc----------ccchhHHHHHHHHHHHHHH
Confidence 11112222222221 121111111111111 1111222222221100000
Q ss_pred ccCcc-cccCCCcchHHHH----HHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhh-
Q psy1544 822 TDGSE-KGKQGKGGAKALM----NTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLK- 895 (1331)
Q Consensus 822 ~~~~~-~~~~~~~~~~~l~----~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~- 895 (1331)
..... .......+..... ..+..++....++.- ......+....... ..........++|+..|.++|....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~K~~~L~~~l~~~~~ 386 (556)
T 4a2p_A 309 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELE-QHLTAKFQEKEPEL-IALSKDETNENPKLEELVCILDDAYR 386 (556)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHH-HHHHHHHHTTHHHH-HHHHHCSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHhhHHHHh-hhhccCCCCCChHHHHHHHHHHHHhc
Confidence 00000 0000000000001 111111110000000 00000000000000 0000001134889999999998776
Q ss_pred -cCCCeeEEEeccHHHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q psy1544 896 -STGHRVLLFCQMTQLMNILEDYFSYR------------GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG 962 (1331)
Q Consensus 896 -~~g~KVLIFsq~~~~ld~L~~~L~~~------------g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~agg 962 (1331)
..++|+||||+++.+++.|..+|... |..+..+||+++..+|..+++.|++ ++.+. +||||+++|
T Consensus 387 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~-vLvaT~~~~ 464 (556)
T 4a2p_A 387 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNR-LLIATSVAD 464 (556)
T ss_dssp HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CC-EEEEEC---
T ss_pred CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc-cCceE-EEEEcCchh
Confidence 66789999999999999999999875 6666777888999999999999995 23444 589999999
Q ss_pred cccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy1544 963 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQA 1033 (1331)
Q Consensus 963 eGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~~ 1033 (1331)
+|||+++|++||+||++||+..|+||+|| +| .+++.+|.|++.++++++ +.....|..+...++..
T Consensus 465 ~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 465 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp --------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55 477889999999999998 66677777777777653
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.7e-36 Score=390.28 Aligned_cols=437 Identities=16% Similarity=0.196 Sum_probs=236.0
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCc-cHHHHHHHHHHHc
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--NGPFLIIVPLS-TLSNWSLEFERWA 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--~~p~LIV~P~s-ll~qW~~E~~k~~ 629 (1331)
...+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||+. ++.||..+|.+|+
T Consensus 245 g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 356899999999998874 6889999999999999998888877766432 56799999985 6699999999998
Q ss_pred C--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--Ccc-cccCccEEEEeCCcccCCcchHHHHHHHHhc
Q psy1544 630 P--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPL-AKLHWKYMIIDEGHRMKNHHCKLTHILNTFY 704 (1331)
Q Consensus 630 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l-~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~ 704 (1331)
+ ++.+..++|.......... ...+++|+|+||+.+.... ..+ ....|++|||||||++.+... ....+..+.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGGTCCEEEECCC-----CHHH--HHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHH--hhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 7 7888889888644332221 2346899999999998643 223 344689999999999988664 233222222
Q ss_pred --------cCCceeeeccCCCCCChHHHHHHH-------hhhcCC----CCCChhHHHHHhhccccccccccc-cC---H
Q psy1544 705 --------VAPHRLLLTGTPLQNKLPELWALL-------NFLLPS----IFKSVSTFEQWFNAPFATTGEKVE-LN---E 761 (1331)
Q Consensus 705 --------~~~~rllLTgTPlqN~l~EL~~ll-------~fL~p~----~~~~~~~F~~~f~~p~~~~~~~~~-~~---~ 761 (1331)
...++|+|||||.+++..+++..+ ..+... .......+..++..+......... .. .
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 236789999999886543333222 222221 222334555555554322111100 00 0
Q ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhCCCceEEE-EEcCCCH--HH-H-------
Q psy1544 762 EETILIIRRLHKVLRP----------------------FLLRRLKKEVESQLPDKVEYI-IKCDMSG--LQ-K------- 808 (1331)
Q Consensus 762 ~~~~~~~~rL~~~L~p----------------------~~lRR~k~~v~~~LP~k~e~~-v~~~ls~--~q-~------- 808 (1331)
......+..++.+++. ++....+......++...... +...+.. .. +
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222333333332 111111111111111110000 0000000 00 0
Q ss_pred --------HHHHHHHhhhhhcccCcccccCCCcchHHHHHH----HHHHHHhcCCccchhhhHhhhhhccCCCCcccCCc
Q psy1544 809 --------VLYRHMHTKGILLTDGSEKGKQGKGGAKALMNT----IVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPD 876 (1331)
Q Consensus 809 --------~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 876 (1331)
..+..+......... . ........+... +..+...+..
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~l~~~~~~------------------------- 607 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKN----G-PYTELEQHLTAKFQEKEPELIALSKD------------------------- 607 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHH----T-TCCHHHHHHHHHHHTTHHHHHHHHHC-------------------------
T ss_pred hhccccHHHHHHHHHHHHHHHhc----c-CccHHHHHHHHHHHHHHHHHHHhhcC-------------------------
Confidence 000000000000000 0 000000111110 1111111110
Q ss_pred cccccchhHHHHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHH
Q psy1544 877 LYRVSGKFELLDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSYR------------GFKYMRLDGTTKAEDRGDLLK 942 (1331)
Q Consensus 877 l~~~s~K~~~L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~------------g~~~~~idG~~~~~eR~~~i~ 942 (1331)
....++|+..|..+|.... ..++|+||||+++.+++.|..+|... |..+..+||+++..+|..+++
T Consensus 608 ~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~ 687 (797)
T 4a2q_A 608 ETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 687 (797)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------
T ss_pred CCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHH
Confidence 1134889999999998754 56789999999999999999999763 667788889999999999999
Q ss_pred HhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHH
Q psy1544 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARY 1022 (1331)
Q Consensus 943 ~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~ 1022 (1331)
.|++ ++.+. |||||+++|+|||+++|++||+||++||+..|+||+|| +| .+++.+|.|++.++++++ +.....
T Consensus 688 ~F~~-~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ 760 (797)
T 4a2q_A 688 AFKT-SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRY 760 (797)
T ss_dssp -------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHH
T ss_pred Hhhc-cCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHH
Confidence 9996 13334 58999999999999999999999999999999999999 55 478899999999999999 667777
Q ss_pred HHHHHHHHHhc
Q psy1544 1023 KLNMDEKVIQA 1033 (1331)
Q Consensus 1023 K~~l~~~vi~~ 1033 (1331)
|..+...++..
T Consensus 761 ke~~~~~~i~~ 771 (797)
T 4a2q_A 761 KEEMMNKAVEK 771 (797)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777754
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-36 Score=395.64 Aligned_cols=447 Identities=16% Similarity=0.213 Sum_probs=236.6
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCCc-cHHHHHHHHHHHcC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--NGPFLIIVPLS-TLSNWSLEFERWAP 630 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--~~p~LIV~P~s-ll~qW~~E~~k~~p 630 (1331)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. ++.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46899999999999974 7889999999999999988887766554321 56799999986 66999999999987
Q ss_pred --CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--Ccc-cccCccEEEEeCCcccCCcchHHHHHHHHhc-
Q psy1544 631 --SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPL-AKLHWKYMIIDEGHRMKNHHCKLTHILNTFY- 704 (1331)
Q Consensus 631 --~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l-~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~- 704 (1331)
++.+.+++|....+..... ....++|+|+||+.+.... ..+ ....|++|||||||++.+..+ ....+..+.
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHH--hccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 6888888887643322111 1235799999999998643 223 334689999999999988765 333332322
Q ss_pred -------cCCceeeeccCCCCCChHHHHHHHh-------hhcCC----CCCChhHHHHHhhccccccccccc-cCH---H
Q psy1544 705 -------VAPHRLLLTGTPLQNKLPELWALLN-------FLLPS----IFKSVSTFEQWFNAPFATTGEKVE-LNE---E 762 (1331)
Q Consensus 705 -------~~~~rllLTgTPlqN~l~EL~~ll~-------fL~p~----~~~~~~~F~~~f~~p~~~~~~~~~-~~~---~ 762 (1331)
...++|+|||||.+++..+++..++ .+... .......+..++..+......... ... .
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2267899999998876544433222 22221 222334555555544322211110 010 1
Q ss_pred HHHHHHHHHHHHHHH----------------------HHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhh
Q psy1544 763 ETILIIRRLHKVLRP----------------------FLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGIL 820 (1331)
Q Consensus 763 ~~~~~~~rL~~~L~p----------------------~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~ 820 (1331)
.....+..++.++.. ++....+......+|.. .....+|..+......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~----------~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTEH 548 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHHH
Confidence 111122233333222 11111111111112211 1111222111110000
Q ss_pred cc--cCc--ccccCCC-cchHHHHHHHHHHHHhcCCcc---c---hhhhHhhhhhccCCCCcccCCccccccchhHHHHH
Q psy1544 821 LT--DGS--EKGKQGK-GGAKALMNTIVQLRKLCNHPF---M---FQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDR 889 (1331)
Q Consensus 821 ~~--~~~--~~~~~~~-~~~~~l~~~l~~Lrk~~~hp~---l---~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ 889 (1331)
+. ... .....+. .....+...+..++.....+. + +......+.... ......++|+..|.+
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~--------~~~~~~~~K~~~L~~ 620 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALS--------KDETNENPKLEELVC 620 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH--------TSTTCCCHHHHHHHH
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhh--------hccCCCCHHHHHHHH
Confidence 00 000 0000000 000000011111111000000 0 000000000000 011134889999999
Q ss_pred hhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhc------------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEE
Q psy1544 890 ILPKLK--STGHRVLLFCQMTQLMNILEDYFSYR------------GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFV 955 (1331)
Q Consensus 890 lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~------------g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~L 955 (1331)
+|.... ..++|+||||+++.+++.|..+|... |..+..+||+++..+|..++++|+. ++.+. ||
T Consensus 621 lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~-~g~~~-VL 698 (936)
T 4a2w_A 621 ILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNR-LL 698 (936)
T ss_dssp HHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCS-EE
T ss_pred HHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-cCCee-EE
Confidence 998865 56789999999999999999999976 6667777888999999999999995 23344 58
Q ss_pred eeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy1544 956 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ 1032 (1331)
Q Consensus 956 lST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~~l~~~vi~ 1032 (1331)
|||+++|+||||++|++||+||++||+..++||+|| +| .+.+.+|.|++.+|++++.+ ....|..+...++.
T Consensus 699 VaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 699 IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp EEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred EEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 44 57788999999999999866 66666666666654
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.7e-36 Score=373.42 Aligned_cols=436 Identities=15% Similarity=0.180 Sum_probs=242.7
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCC-ccHHHHHHHHHHHcC-
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--NGPFLIIVPL-STLSNWSLEFERWAP- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~p- 630 (1331)
.+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||+ .++.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999874 7889999999999999998888777665432 5569999999 666999999999986
Q ss_pred -CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--Ccc-cccCccEEEEeCCcccCCcchHHHHHHHHhc--
Q psy1544 631 -SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPL-AKLHWKYMIIDEGHRMKNHHCKLTHILNTFY-- 704 (1331)
Q Consensus 631 -~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l-~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~-- 704 (1331)
++.+..+.|........... ....+|+|+||+.+.... ..+ ....|++|||||||++.+..+. ...+..+.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~-~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHI--IEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPY-NQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHH--HHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHH--hcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchH-HHHHHHHHHh
Confidence 67888888876433221111 235799999999998743 223 3446899999999999887642 22222221
Q ss_pred -------cCCceeeeccCCCCCChHHH-------HHHHhhhcCCCC----CChhHHHHHhhccccccccccc-cCH---H
Q psy1544 705 -------VAPHRLLLTGTPLQNKLPEL-------WALLNFLLPSIF----KSVSTFEQWFNAPFATTGEKVE-LNE---E 762 (1331)
Q Consensus 705 -------~~~~rllLTgTPlqN~l~EL-------~~ll~fL~p~~~----~~~~~F~~~f~~p~~~~~~~~~-~~~---~ 762 (1331)
...++|+|||||.+++..++ ..+..++....+ .....+..++..+......... ... .
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKC 235 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHH
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHH
Confidence 22478999999998874333 334444443221 1223333333332211100000 000 1
Q ss_pred HHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhh
Q psy1544 763 ETILIIRRLHKVLRP-----------------------FLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGI 819 (1331)
Q Consensus 763 ~~~~~~~rL~~~L~p-----------------------~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~ 819 (1331)
.....+..++.++.. ++....+......++.. .....+|..+.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADK----------EEESRVCKALFLYTS 305 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccch----------hhHHHHHHHHHHHHH
Confidence 111112222222111 11111110000001100 000011100000000
Q ss_pred ---------------------hcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccc
Q psy1544 820 ---------------------LLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLY 878 (1331)
Q Consensus 820 ---------------------~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~ 878 (1331)
............ .+.......+ +...+..+....... ....
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~ 367 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVRE-AAFDETEREL--TRRFEEKLEELEKVS---------------RDPS 367 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC------HHHHH--HHHHHTTHHHHHHHH---------------HCGG
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh-cccchHHHHH--HHHHhhhhhhhhhhc---------------cCCC
Confidence 000000000000 0000000000 111222211110000 0111
Q ss_pred cccchhHHHHHhhhhhhc--CCCeeEEEeccHHHHHHHHHHHHhcC------------CeEEEEcCCCCHHHHHHHHHHh
Q psy1544 879 RVSGKFELLDRILPKLKS--TGHRVLLFCQMTQLMNILEDYFSYRG------------FKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~--~g~KVLIFsq~~~~ld~L~~~L~~~g------------~~~~~idG~~~~~eR~~~i~~F 944 (1331)
..++|+..|.++|..+.. .++|+||||+++.+++.|..+|...| ..+..+||+++..+|..+++.|
T Consensus 368 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 368 NENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 247899999999988754 45899999999999999999998763 4556666799999999999999
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHHHHH
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKL 1024 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~~K~ 1024 (1331)
++ ++.+. +||||+++|+|||+++|++||+||++||+..|+||+|| |+.+.+.+|.|++.+++++. ......|.
T Consensus 448 ~~-~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e 520 (555)
T 3tbk_A 448 RA-SGDNN-ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKE 520 (555)
T ss_dssp -----CCS-EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHH
T ss_pred hc-CCCee-EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHH
Confidence 95 13444 48899999999999999999999999999999999999 55688999999999999887 44555566
Q ss_pred HHHHHHHh
Q psy1544 1025 NMDEKVIQ 1032 (1331)
Q Consensus 1025 ~l~~~vi~ 1032 (1331)
.+....+.
T Consensus 521 ~~~~~~~~ 528 (555)
T 3tbk_A 521 KIMNESIL 528 (555)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 12
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=361.37 Aligned_cols=439 Identities=15% Similarity=0.179 Sum_probs=246.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCc-cHHHH-HHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK---VNGPFLIIVPLS-TLSNW-SLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~---~~~p~LIV~P~s-ll~qW-~~E~~k~~ 629 (1331)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||||+. ++.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999985 778999999999999999888877665532 236699999996 56999 99999999
Q ss_pred CC-CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--------CcccccCccEEEEeCCcccCCcch--H-HH
Q psy1544 630 PS-VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--------GPLAKLHWKYMIIDEGHRMKNHHC--K-LT 697 (1331)
Q Consensus 630 p~-~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--------~~l~~~~~~~vIiDEaHrikn~~s--k-~~ 697 (1331)
+. +.+..+.|.......... .....+|+|+|++.+.... ..+....|++|||||||++.+... . ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~--~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPE--VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp TTTSCEEEEC----CCCCHHH--HHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred CcCceEEEEeCCcchhhHHHh--hhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 87 888888887543221111 1257899999999998643 234445799999999999854331 1 11
Q ss_pred HHHHHhc-------------cCCceeeeccCCCCCCh-------HHHHHHHhhhcC-CCCC---ChhHHHHHhhcccccc
Q psy1544 698 HILNTFY-------------VAPHRLLLTGTPLQNKL-------PELWALLNFLLP-SIFK---SVSTFEQWFNAPFATT 753 (1331)
Q Consensus 698 ~~l~~~~-------------~~~~rllLTgTPlqN~l-------~EL~~ll~fL~p-~~~~---~~~~F~~~f~~p~~~~ 753 (1331)
..+.... ...++|+|||||..++. .++..++..+.+ .+.. ....+..++..|....
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 1221111 34678999999998643 334444555555 2221 1233333333322111
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHH----HhhhhhcccCccccc
Q psy1544 754 GEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHM----HTKGILLTDGSEKGK 829 (1331)
Q Consensus 754 ~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i----~~~~~~~~~~~~~~~ 829 (1331)
..............+..+...+.. .+ .+-+. ..+.. ..|... ........ .
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~--------~~--~~~~~------~~~g~---~~~~~~~~~~~~~~~~~~------~ 294 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQT--------YC--QMSPM------SDFGT---QPYEQWAIQMEKKAAKEG------N 294 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHH--------HH--TCCCC------SCSSS---HHHHHHHHHHHHHHHHHT------C
T ss_pred EEcccccCChHHHHHHHHHHHHHH--------Hh--ccCcc------hhccc---hHHHHHHHHHHHHHHHhh------h
Confidence 100000000001111111111111 10 11110 01111 112211 11110000 0
Q ss_pred CCCcchHHHHHHHHHHHHhcC-------CccchhhhHhhhhhccC----CC----CcccC-------------------C
Q psy1544 830 QGKGGAKALMNTIVQLRKLCN-------HPFMFQNIEEKFSDHVG----GS----GIVSG-------------------P 875 (1331)
Q Consensus 830 ~~~~~~~~l~~~l~~Lrk~~~-------hp~l~~~~~~~~~~~~~----~~----~~~~~-------------------~ 875 (1331)
.........+........++. ..++............. .. .+... .
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 000000000000000000000 00000000000000000 00 00000 0
Q ss_pred ccccccchhHHHHHhhhhhhcC---CCeeEEEeccHHHHHHHHHHHHhc------CCeEEEEcCC--------CCHHHHH
Q psy1544 876 DLYRVSGKFELLDRILPKLKST---GHRVLLFCQMTQLMNILEDYFSYR------GFKYMRLDGT--------TKAEDRG 938 (1331)
Q Consensus 876 ~l~~~s~K~~~L~~lL~~l~~~---g~KVLIFsq~~~~ld~L~~~L~~~------g~~~~~idG~--------~~~~eR~ 938 (1331)
.....+.|+..|.++|...... +.++||||+++.+++.|..+|... |+++..+||+ ++..+|.
T Consensus 375 ~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~ 454 (699)
T 4gl2_A 375 NPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQK 454 (699)
T ss_dssp CCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHH
Confidence 0001457788888888765432 789999999999999999999987 9999999999 9999999
Q ss_pred HHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHH
Q psy1544 939 DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILA 1018 (1331)
Q Consensus 939 ~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~ 1018 (1331)
.+++.|+++. +. +||+|+++|+|||++++++||+||++||+..|.||+||++|-| ..++.+...++.+.....
T Consensus 455 ~~~~~F~~g~--~~-VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~ 527 (699)
T 4gl2_A 455 EVISKFRTGK--IN-LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERET 527 (699)
T ss_dssp HHHHHHCC-----C-CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHH
T ss_pred HHHHHHhcCC--Cc-EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHH
Confidence 9999999643 44 5899999999999999999999999999999999999986655 444555666665555444
Q ss_pred HHHHHHHHHHHHH
Q psy1544 1019 AARYKLNMDEKVI 1031 (1331)
Q Consensus 1019 ~~~~K~~l~~~vi 1031 (1331)
....+..+....+
T Consensus 528 ~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 528 VNDFREKMMYKAI 540 (699)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555544444
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.4e-33 Score=345.69 Aligned_cols=347 Identities=15% Similarity=0.162 Sum_probs=248.3
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHH--cCC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERW--APS 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~--~p~ 631 (1331)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... .+++|||||+. +..||..+|.+| .+.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 4899999999999886 47899999999999999988887776543 34799999995 569999999999 555
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
..+..+.|....... .....+|+|+||+.+.+.... ...+|++|||||||++.+.. ....+..+....++|+
T Consensus 186 ~~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~~--~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 186 AMIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGKS--ISSIISGLNNCMFKFG 257 (510)
T ss_dssp GGEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHHH--HHHHGGGCTTCCEEEE
T ss_pred cceEEEecCCccccc-----cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCccc--HHHHHHhcccCcEEEE
Confidence 677777665432211 235789999999998876332 22368999999999998733 3344455546778999
Q ss_pred eccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy1544 712 LTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 791 (1331)
Q Consensus 712 LTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~L 791 (1331)
||||| .+...+++++..++.+..+.... .. . + -...+
T Consensus 258 lSATp-~~~~~~~~~~~~~~~~~~~~~~~-------------~~---~---------------~-----------~~~~l 294 (510)
T 2oca_A 258 LSGSL-RDGKANIMQYVGMFGEIFKPVTT-------------SK---L---------------M-----------EDGQV 294 (510)
T ss_dssp EESCG-GGCSSCHHHHHHHHCSEECCCCC-------------C-------------------------------------
T ss_pred EEeCC-CCCcccHHHhHHhhCCeEEeeCH-------------HH---H---------------h-----------hCCcC
Confidence 99999 55555667766666543321100 00 0 0 00135
Q ss_pred CCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCc
Q psy1544 792 PDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGI 871 (1331)
Q Consensus 792 P~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 871 (1331)
++.....+.+.++........ + ..... .+..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~------~~~~~~---------------------- 327 (510)
T 2oca_A 295 TELKINSIFLRYPDEFTTKLK------------------G-KTYQE------EIKIIT---------------------- 327 (510)
T ss_dssp -CCEEEEEEEECCHHHHHHHT------------------T-CCHHH------HHHHHH----------------------
T ss_pred CCceEEEEeecCChHHhcccc------------------c-cchHH------HHHHHh----------------------
Confidence 566666667777654331100 0 00000 011111
Q ss_pred ccCCccccccchhHHHHHhhhhhhcC-CCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCC
Q psy1544 872 VSGPDLYRVSGKFELLDRILPKLKST-GHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSE 950 (1331)
Q Consensus 872 ~~~~~l~~~s~K~~~L~~lL~~l~~~-g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~ 950 (1331)
....|...+..++...... +.++|||+. +..++.|...|...+.++..+||+++..+|..+++.|+++ .
T Consensus 328 -------~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g--~ 397 (510)
T 2oca_A 328 -------GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG--K 397 (510)
T ss_dssp -------TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC--C
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC--C
Confidence 1124555666666665444 456677777 8888889999999988999999999999999999999954 4
Q ss_pred ceEEEeec-cccccccCCCCCCEEEEeCCCCCccccccccccccccCCCC-ceEEEEEeeCCCHHHHH
Q psy1544 951 YFIFVLST-RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKN-EVRVLRLMTVNSVEERI 1016 (1331)
Q Consensus 951 ~~v~LlST-~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k-~V~V~rli~~~TiEE~I 1016 (1331)
+.| ||+| .++++|||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.+
T Consensus 398 ~~v-Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 398 GII-IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp SCE-EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred CCE-EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 444 7777 99999999999999999999999999999999999999987 69999999877654433
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.3e-32 Score=352.22 Aligned_cols=440 Identities=17% Similarity=0.192 Sum_probs=228.9
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCC--CCcEEEEeCC-ccHHHHHHHHHHHc
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKV--NGPFLIIVPL-STLSNWSLEFERWA 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~--~~p~LIV~P~-sll~qW~~E~~k~~ 629 (1331)
...+|++||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||||+ .++.||..+|.+++
T Consensus 10 g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp C--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 345899999999999885 7899999999999999998888776655432 2679999998 67799999999998
Q ss_pred C--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--Ccc-cccCccEEEEeCCcccCCcchHHHHH---HH
Q psy1544 630 P--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPL-AKLHWKYMIIDEGHRMKNHHCKLTHI---LN 701 (1331)
Q Consensus 630 p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l-~~~~~~~vIiDEaHrikn~~sk~~~~---l~ 701 (1331)
+ ++.+..+.|+...+...... ....+|+|+||+.+.+.. +.+ ....|++|||||||++.+........ +.
T Consensus 86 ~~~~~~v~~~~g~~~~~~~~~~~--~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 86 ERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp TTTTCCEEEECSSSCSSSCHHHH--HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCccccccHHHh--ccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 7 67888888865332211111 235899999999998753 223 34578999999999998776432221 11
Q ss_pred Hh-----ccCCceeeeccCCCCCC-------hHHHHHHHhhhcCCCCC----ChhHHHHHhhccccccccccccCHHHHH
Q psy1544 702 TF-----YVAPHRLLLTGTPLQNK-------LPELWALLNFLLPSIFK----SVSTFEQWFNAPFATTGEKVELNEEETI 765 (1331)
Q Consensus 702 ~~-----~~~~~rllLTgTPlqN~-------l~EL~~ll~fL~p~~~~----~~~~F~~~f~~p~~~~~~~~~~~~~~~~ 765 (1331)
.. ....++|+|||||..++ ...++.++..+....+. .......+...|................
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 11 13477899999998654 34444555444433322 2223333333332110000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhh---hcccCcccccCCCcchHHHHHHH
Q psy1544 766 LIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGI---LLTDGSEKGKQGKGGAKALMNTI 842 (1331)
Q Consensus 766 ~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~---~~~~~~~~~~~~~~~~~~l~~~l 842 (1331)
..+..+..- ++.+...+...+ ... ..+..++.....|........ ...... ...........++...
T Consensus 244 ~~~~~l~~~-----i~~l~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 313 (696)
T 2ykg_A 244 YIIAQLMRD-----TESLAKRICKDL-ENL---SQIQNREFGTQKYEQWIVTVQKACMVFQMP-DKDEESRICKALFLYT 313 (696)
T ss_dssp HHHHHHHHH-----HHHHHHHHSTTG-GGS---SSCCSCCSSSHHHHHHHHHHHHTSCC-------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHH-HHh---hccccccccchhHHHHHHHHHHHHHHhhcc-cchhhhHHHHHHHHHH
Confidence 011111000 111222221110 000 011111111222222111100 000000 0000000111122222
Q ss_pred HHHHHhcCCccchhhhHh---------hhhhccCCCCcccCC-------------------ccccccchhHHHHHhhhhh
Q psy1544 843 VQLRKLCNHPFMFQNIEE---------KFSDHVGGSGIVSGP-------------------DLYRVSGKFELLDRILPKL 894 (1331)
Q Consensus 843 ~~Lrk~~~hp~l~~~~~~---------~~~~~~~~~~~~~~~-------------------~l~~~s~K~~~L~~lL~~l 894 (1331)
..|++.. ++........ .+............. .....+.|+..|..+|...
T Consensus 314 ~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~ 392 (696)
T 2ykg_A 314 SHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 392 (696)
T ss_dssp HHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 3333322 2221110000 000000000000000 0002467999999999876
Q ss_pred h--cCCCeeEEEeccHHHHHHHHHHHHhcC----CeEEEEcC--------CCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q psy1544 895 K--STGHRVLLFCQMTQLMNILEDYFSYRG----FKYMRLDG--------TTKAEDRGDLLKKFNAPDSEYFIFVLSTRA 960 (1331)
Q Consensus 895 ~--~~g~KVLIFsq~~~~ld~L~~~L~~~g----~~~~~idG--------~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a 960 (1331)
. ..+.++||||+++.+++.|..+|...| +++..++| +++..+|..+++.|+. ++.+. +||||++
T Consensus 393 ~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~-~g~~~-vLVaT~v 470 (696)
T 2ykg_A 393 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA-SGDHN-ILIATSV 470 (696)
T ss_dssp HTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCS-CSEEEES
T ss_pred hccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh-cCCcc-EEEEech
Confidence 4 356799999999999999999999988 89999954 9999999999999985 13344 4899999
Q ss_pred cccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHH
Q psy1544 961 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEER 1015 (1331)
Q Consensus 961 ggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~ 1015 (1331)
+|+|||+++|++||+||++||+..|.||+|| +|. +...+|.|++.+++++.
T Consensus 471 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp SCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 9999999999999999999999999999999 885 56788889998877654
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.3e-32 Score=345.22 Aligned_cols=354 Identities=11% Similarity=0.137 Sum_probs=215.9
Q ss_pred cCCccHHHHHHHHHHHHHhcCC-CceEEecCCCCCHHHHHHHHHHHHHHhc------CCCCcEEEEeCC-ccHHHHH-HH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNN-LNGILADEMGLGKTIQTIALITYLMEKK------KVNGPFLIIVPL-STLSNWS-LE 624 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~-~~gILADemGlGKTi~ai~li~~l~~~~------~~~~p~LIV~P~-sll~qW~-~E 624 (1331)
+..|+|||.+++.+++..+.++ .++||+++||+|||++++.++..++..+ ...+++|||||+ .++.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4589999999999999877665 4579999999999999999998887764 135669999996 5559999 88
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc------CcccccCccEEEEeCCcccCCcchHHHH
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK------GPLAKLHWKYMIIDEGHRMKNHHCKLTH 698 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~------~~l~~~~~~~vIiDEaHrikn~~sk~~~ 698 (1331)
|..|.... ..+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.....++
T Consensus 256 ~~~~~~~~--~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 256 FTPFGDAR--HKIEGG----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp CTTTCSSE--EECCC------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CH
T ss_pred HHhcchhh--hhhhcc----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHH
Confidence 88876432 222222 12356899999999987652 2334447999999999999875433334
Q ss_pred HHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 699 ILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 699 ~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
.+...+...++|+|||||..+...+++.++.- .++. .. +...+.
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~---~~~~---------------------~~----------~~~~i~-- 367 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFGN---PIYT---------------------YS----------LRQGID-- 367 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS---CSEE---------------------EC----------HHHHHH--
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcCC---ceEe---------------------cC----------HHHHhh--
Confidence 44444467889999999998887766554421 1100 00 000000
Q ss_pred HHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhh
Q psy1544 779 LLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNI 858 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~ 858 (1331)
...+.+.....+.+....................... ..........
T Consensus 368 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------------------- 414 (590)
T 3h1t_A 368 ---------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPD---GEYQTKDFER--------------------- 414 (590)
T ss_dssp ---------HTSSCCEEEEEEEETTCC--------------------------CCSHHH---------------------
T ss_pred ---------CCccCCcEEEEeeeeeecccccccccccccccccccc---ccCCHHHhhh---------------------
Confidence 0123344344444333211111100000000000000 0000000000
Q ss_pred HhhhhhccCCCCcccCCccccccchhHHHHHhhhhh---hcCCCeeEEEeccHHHHHHHHHHHHhcCCe--------EEE
Q psy1544 859 EEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKL---KSTGHRVLLFCQMTQLMNILEDYFSYRGFK--------YMR 927 (1331)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l---~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~--------~~~ 927 (1331)
.+....+...+.+.|..+ ...+.|+||||+++.+++.|...|...+.. +..
T Consensus 415 ------------------~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 415 ------------------VIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp ------------------HHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ------------------HhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 001112223333222221 134679999999999999999999876543 788
Q ss_pred EcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCC---CCceEEE
Q psy1544 928 LDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ---KNEVRVL 1004 (1331)
Q Consensus 928 idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ---~k~V~V~ 1004 (1331)
++|+++ ++|..++++|++++..+.++|+||+++++|||++.+++||+++++||+..|.|++||++|.|+ +..+.||
T Consensus 477 i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 477 VTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp CSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred EeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 999986 379999999998777788899999999999999999999999999999999999999999995 5558888
Q ss_pred EEe
Q psy1544 1005 RLM 1007 (1331)
Q Consensus 1005 rli 1007 (1331)
.++
T Consensus 556 D~~ 558 (590)
T 3h1t_A 556 DYT 558 (590)
T ss_dssp ECS
T ss_pred ecC
Confidence 877
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=3.6e-31 Score=316.38 Aligned_cols=330 Identities=17% Similarity=0.208 Sum_probs=229.5
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHc---C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWA---P 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~---p 630 (1331)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. ++.||..++.+|. +
T Consensus 29 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 104 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 104 (391)
T ss_dssp CSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCT
T ss_pred CCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCC
Confidence 3699999999998875 678999999999999998777666554444455799999995 5599999999986 4
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcch---HHHHHHHHhcc
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFYV 705 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~~ 705 (1331)
++.+.++.|........ ........+|+|+|++.+... ...+....|++|||||||++.+... .+...+.....
T Consensus 105 ~~~~~~~~g~~~~~~~~-~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDE-EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp TCCEEEECTTSCHHHHH-HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred CeEEEEEeCCCCHHHHH-HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 67888888875544332 223345679999999998753 2223345789999999999976422 22223333323
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
..++++|||||-.. ..++.. .++..
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~~-----------------~~~~~------------------------------------- 208 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVCR-----------------KFMQD------------------------------------- 208 (391)
T ss_dssp SSEEEEEESSCCST-HHHHHH-----------------HHCSS-------------------------------------
T ss_pred CceEEEEEeeCCHH-HHHHHH-----------------HHcCC-------------------------------------
Confidence 56789999997432 111100 00000
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
... +.+.-. . ......
T Consensus 209 --------~~~--~~~~~~---------------------~--~~~~~~------------------------------- 224 (391)
T 1xti_A 209 --------PME--IFVDDE---------------------T--KLTLHG------------------------------- 224 (391)
T ss_dssp --------CEE--EECCCC---------------------C--CCCCTT-------------------------------
T ss_pred --------CeE--EEecCc---------------------c--ccCccc-------------------------------
Confidence 000 000000 0 000000
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
............|...|..++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+
T Consensus 225 -----~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 297 (391)
T 1xti_A 225 -----LQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFK 297 (391)
T ss_dssp -----CEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -----ceEEEEEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 000000012244666777777654 5679999999999999999999999999999999999999999999998
Q ss_pred CCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHH
Q psy1544 946 APDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAAR 1021 (1331)
Q Consensus 946 ~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~ 1021 (1331)
++.. . +|++|+++++|+|++++++||+||++||+..+.|++||++|.|+...+.+ |++.. -+..++....
T Consensus 298 ~~~~--~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~-~~~~~~~~~~ 367 (391)
T 1xti_A 298 DFQR--R-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT--FVSDE-NDAKILNDVQ 367 (391)
T ss_dssp TTCC--S-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEE--EECSH-HHHHHHHHHH
T ss_pred cCCC--c-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEE--EEccc-chHHHHHHHH
Confidence 6443 3 58999999999999999999999999999999999999999997665544 44433 2444444433
No 17
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=1.2e-31 Score=302.88 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=162.1
Q ss_pred CCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccC--CCcchHHHHHHHHHHHHhcCCccchh-hhHhhhhhccC
Q psy1544 791 LPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQ--GKGGAKALMNTIVQLRKLCNHPFMFQ-NIEEKFSDHVG 867 (1331)
Q Consensus 791 LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~Lrk~~~hp~l~~-~~~~~~~~~~~ 867 (1331)
-|.+.++++.|.||..|+.+|+.+.............+.. .......+.+.+++||++||||+++. ..... ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~---~~- 95 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPK---SL- 95 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCS---CS-
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCc---cc-
Confidence 3899999999999999999999997543222111111111 11224578899999999999999983 21110 00
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
........++..||||.+|.++|..+.+.|||||||||++.++|+|+++|..+|++|.|+||++... +.+ ..
T Consensus 96 -~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~ 167 (328)
T 3hgt_A 96 -ITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------AN 167 (328)
T ss_dssp -CSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred -cccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cc
Confidence 0001134567899999999999999999999999999999999999999999999999999996543 222 12
Q ss_pred CCCceEEEeeccccccccC-----CCCCCEEEEeCCCCCcccc-cccccccccc--CCCCceEEEEEeeCCCHHHHHHHH
Q psy1544 948 DSEYFIFVLSTRAGGLGLN-----LQTADTVIIFDSDWNPHQD-LQAQDRAHRI--GQKNEVRVLRLMTVNSVEERILAA 1019 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLN-----L~~ad~VI~~D~~wNp~~~-~QaiGRa~Ri--GQ~k~V~V~rli~~~TiEE~I~~~ 1019 (1331)
++.+++||+ |++||.|+| |.+||+||+||++|||..+ +||+.|+||+ ||++.|.||||++.||||+.++..
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 356888877 568888886 8999999999999999998 9999999999 789999999999999999999876
Q ss_pred H
Q psy1544 1020 A 1020 (1331)
Q Consensus 1020 ~ 1020 (1331)
-
T Consensus 247 ~ 247 (328)
T 3hgt_A 247 G 247 (328)
T ss_dssp H
T ss_pred c
Confidence 3
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.5e-30 Score=307.54 Aligned_cols=313 Identities=20% Similarity=0.296 Sum_probs=222.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 631 (1331)
.+|+|||.+++.+++. ++.++|++++||+|||++++..+..++... ....+|||||+..+ .||.+++.++++ .
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 4799999999998875 336889999999999999877776654432 34469999999555 999999999975 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcch--HHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHC--KLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~s--k~~~~l~~~~~~~ 707 (1331)
+.+..+.|.......... ....+|+|+|++.+.... ..+....|++|||||||++.+... .+...+..+....
T Consensus 103 ~~v~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKA---LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CCEEEECTTSCHHHHHHH---HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred ceEEEEECCcchHHHHhh---cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 566667776554433222 236899999999987642 223344789999999999976542 3334444443567
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.++|||||-.. +..++. .++
T Consensus 180 ~~i~~SAT~~~~----~~~~~~--------------~~~----------------------------------------- 200 (367)
T 1hv8_A 180 RILLFSATMPRE----ILNLAK--------------KYM----------------------------------------- 200 (367)
T ss_dssp EEEEECSSCCHH----HHHHHH--------------HHC-----------------------------------------
T ss_pred eEEEEeeccCHH----HHHHHH--------------HHc-----------------------------------------
Confidence 789999998321 111000 000
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
.. ...+...... .. .+.+
T Consensus 201 ----~~--~~~~~~~~~~-----------------------~~-------------------~~~~-------------- 218 (367)
T 1hv8_A 201 ----GD--YSFIKAKINA-----------------------NI-------------------EQSY-------------- 218 (367)
T ss_dssp ----CS--EEEEECCSSS-----------------------SS-------------------EEEE--------------
T ss_pred ----CC--CeEEEecCCC-----------------------Cc-------------------eEEE--------------
Confidence 00 0000000000 00 0000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
.......|+..|..++. ..+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 219 --------~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 287 (367)
T 1hv8_A 219 --------VEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK 287 (367)
T ss_dssp --------EECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT
T ss_pred --------EEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC
Confidence 00112345566666554 5677999999999999999999999999999999999999999999999854
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
. +. +|++|+++++|+|++++++||++|++||+..+.|++||++|.|+...+.+ ++....
T Consensus 288 ~--~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~~~ 346 (367)
T 1hv8_A 288 K--IR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINRRE 346 (367)
T ss_dssp S--SS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECTTS
T ss_pred C--Ce-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcHHH
Confidence 3 34 58899999999999999999999999999999999999999998775544 455543
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=7.6e-30 Score=306.13 Aligned_cols=318 Identities=17% Similarity=0.211 Sum_probs=223.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc-HHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST-LSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p--~ 631 (1331)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+.. ..||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 117 (400)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 3699999999999886 6789999999999999887766655544334556999999954 5899999999986 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcchH-HHHHHHH-hccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHCK-LTHILNT-FYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~sk-~~~~l~~-~~~~~ 707 (1331)
+.+..+.|.......... .....+|+|+|++.+.... ..+...+|++|||||||++.+.... ....+.. +....
T Consensus 118 ~~~~~~~g~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 118 ISCMVTTGGTNLRDDILR--LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp CCEEEECSSSCHHHHHHH--TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred ceEEEEeCCcchHHHHHH--hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 667777776554433222 2457899999999886532 2233346899999999998765421 2222222 22356
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.++||||+-. .+...+ ..+
T Consensus 196 ~~i~lSAT~~~----~~~~~~--------------~~~------------------------------------------ 215 (400)
T 1s2m_A 196 QSLLFSATFPL----TVKEFM--------------VKH------------------------------------------ 215 (400)
T ss_dssp EEEEEESCCCH----HHHHHH--------------HHH------------------------------------------
T ss_pred eEEEEEecCCH----HHHHHH--------------HHH------------------------------------------
Confidence 78999999621 000000 000
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
+.......+...+ ....
T Consensus 216 ---~~~~~~~~~~~~~---------------------------~~~~--------------------------------- 232 (400)
T 1s2m_A 216 ---LHKPYEINLMEEL---------------------------TLKG--------------------------------- 232 (400)
T ss_dssp ---CSSCEEESCCSSC---------------------------BCTT---------------------------------
T ss_pred ---cCCCeEEEecccc---------------------------ccCC---------------------------------
Confidence 0000000000000 0000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
............|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 233 ---~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 307 (400)
T 1s2m_A 233 ---ITQYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 307 (400)
T ss_dssp ---EEEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ---ceeEEEEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC
Confidence 000000112245667777777653 456999999999999999999999999999999999999999999999854
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
. +. +|++|+++++|||++++++||+||++||+..+.||+||++|.|+.. .++.|+..+.
T Consensus 308 ~--~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 308 K--VR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp S--SS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred C--Cc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 3 34 5899999999999999999999999999999999999999999765 4555666653
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=2.2e-30 Score=311.98 Aligned_cols=320 Identities=17% Similarity=0.235 Sum_probs=223.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCC--
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPS-- 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~-- 631 (1331)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. +..||..++.+|+..
T Consensus 58 ~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 4699999999999885 678999999999999998777665554334456799999996 458999999998753
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcch--HHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHC--KLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~s--k~~~~l~~~~~~~ 707 (1331)
+.+..+.|........... ....+|+|+|++.+... ...+....|++|||||||++.+.+. .+...+..+....
T Consensus 134 ~~~~~~~g~~~~~~~~~~~--~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 134 VQCHACIGGTNVGEDIRKL--DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CCEEEECTTSCHHHHHHHH--HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEEECCCCHHHHHHHh--hcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 5566666665444333222 24579999999988754 2334445789999999999976552 3333333333456
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.++||||+-. ++..++... +..+........
T Consensus 212 ~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~~~~------------------------------ 243 (410)
T 2j0s_A 212 QVVLISATLPH----EILEMTNKF--------------MTDPIRILVKRD------------------------------ 243 (410)
T ss_dssp EEEEEESCCCH----HHHTTGGGT--------------CSSCEEECCCGG------------------------------
T ss_pred eEEEEEcCCCH----HHHHHHHHH--------------cCCCEEEEecCc------------------------------
Confidence 78999999731 111111100 000000000000
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
...++......+.+
T Consensus 244 ~~~~~~~~~~~~~~------------------------------------------------------------------ 257 (410)
T 2j0s_A 244 ELTLEGIKQFFVAV------------------------------------------------------------------ 257 (410)
T ss_dssp GCSCTTEEEEEEEE------------------------------------------------------------------
T ss_pred cccCCCceEEEEEe------------------------------------------------------------------
Confidence 00000000000000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
.....|+..|..++.... +.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 258 ----------~~~~~k~~~l~~~~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (410)
T 2j0s_A 258 ----------EREEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 325 (410)
T ss_dssp ----------SSTTHHHHHHHHHHHHHT--SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred ----------CcHHhHHHHHHHHHHhcC--CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC
Confidence 011236666666666543 35999999999999999999999999999999999999999999999854
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
. +. +|++|+++++|||++++++||+||++||+..|.||+||++|.|++. .++.|++.+.
T Consensus 326 ~--~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 326 A--SR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp S--SC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred C--CC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 3 34 5889999999999999999999999999999999999999999765 4455666543
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=3.3e-30 Score=301.18 Aligned_cols=313 Identities=17% Similarity=0.215 Sum_probs=212.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~ 631 (1331)
..|+|||.+++.+++. +.++++.++||+|||++++..+... ...+|||||+. +..||..++.+|+. +
T Consensus 15 ~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999998884 6789999999999999877665542 35699999995 55999999999875 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~~ 707 (1331)
..+..+.|.......... ....+|+|+|++.+... ...+....|++|||||||++.+.. ..+...+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINR---VRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CCEEEECTTSCHHHHHHH---HTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred CcEEEEECCcchHHHHhh---cCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 667777776544433222 23589999999998763 233344578999999999986543 23333444433345
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
..+++||||-.. +...+. .++..+..... .
T Consensus 162 ~~~~~SAT~~~~----~~~~~~--------------~~~~~~~~~~~-~------------------------------- 191 (337)
T 2z0m_A 162 ITGLFSATIPEE----IRKVVK--------------DFITNYEEIEA-C------------------------------- 191 (337)
T ss_dssp EEEEEESCCCHH----HHHHHH--------------HHSCSCEEEEC-S-------------------------------
T ss_pred EEEEEeCcCCHH----HHHHHH--------------HhcCCceeeec-c-------------------------------
Confidence 567889998311 111110 00000000000 0
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
...+......+.+
T Consensus 192 -~~~~~~~~~~~~~------------------------------------------------------------------ 204 (337)
T 2z0m_A 192 -IGLANVEHKFVHV------------------------------------------------------------------ 204 (337)
T ss_dssp -GGGGGEEEEEEEC------------------------------------------------------------------
T ss_pred -cccCCceEEEEEe------------------------------------------------------------------
Confidence 0000000000000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
..........+. ...+.++||||++...++.+...|. .+..+||+++..+|..+++.|+++
T Consensus 205 -------------~~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~ 265 (337)
T 2z0m_A 205 -------------KDDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG 265 (337)
T ss_dssp -------------SSSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT
T ss_pred -------------ChHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC
Confidence 000011111221 2356799999999999999999887 688999999999999999999964
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHH
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAA 1020 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~ 1020 (1331)
. +. +|++|+++++|+|++++++||+||++||+..+.|++||++|.|+...+.+|.. ....+.+.|.+..
T Consensus 266 ~--~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 266 E--YD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp S--CS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred C--Cc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 4 33 58999999999999999999999999999999999999999999888877766 5545555554443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=305.42 Aligned_cols=320 Identities=17% Similarity=0.222 Sum_probs=213.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~ 631 (1331)
..+++||.+++.+++. +.++|++++||+|||++++..+...+......+.+|||||+. +..||.+++.+++. +
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 4799999999998885 778999999999999997776666555444456799999996 45899999999873 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~~ 707 (1331)
..+..+.|......... .......+|+|+|++.+.... ..+....+++|||||||++.+.+ ..+...+..+....
T Consensus 137 ~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQ-KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CCEEECCCCTTHHHHHH-HHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred ceEEEEECCcchHHHHH-HHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 56666666655444332 233467899999999887542 23344468999999999985443 34444554444566
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.++|||||-. ++..++...
T Consensus 216 ~~i~~SAT~~~----~~~~~~~~~-------------------------------------------------------- 235 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTKKF-------------------------------------------------------- 235 (414)
T ss_dssp EEEEECSCCCH----HHHHHHTTT--------------------------------------------------------
T ss_pred eEEEEEEecCH----HHHHHHHHH--------------------------------------------------------
Confidence 78999999831 111111100
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
+..... +.+.. . ...... ..+.+.
T Consensus 236 ---~~~~~~--~~~~~---------------------~---~~~~~~--------------~~~~~~------------- 259 (414)
T 3eiq_A 236 ---MRDPIR--ILVKK---------------------E---ELTLEG--------------IRQFYI------------- 259 (414)
T ss_dssp ---CSSCEE--ECCCC---------------------C---CCCTTS--------------CCEEEE-------------
T ss_pred ---cCCCEE--EEecC---------------------C---ccCCCC--------------ceEEEE-------------
Confidence 000000 00000 0 000000 000000
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
.......|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 260 --------~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 329 (414)
T 3eiq_A 260 --------NVEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 329 (414)
T ss_dssp --------ECSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC
T ss_pred --------EeChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 0001133667777777654 446899999999999999999999999999999999999999999999854
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.+. +|++|+++++|||++++++||+||++||+..|.||+||++|.|+... +|.|++.+
T Consensus 330 --~~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 330 --SSR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp ------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------C--EEEEECST
T ss_pred --CCc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCce--EEEEEcHH
Confidence 334 58999999999999999999999999999999999999999997654 45566665
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=9.4e-29 Score=300.25 Aligned_cols=316 Identities=16% Similarity=0.190 Sum_probs=218.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHH-HHHHhcC----CCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALIT-YLMEKKK----VNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~-~l~~~~~----~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
.+++|+|.+++.+++. +.++|++.+||+|||++++..+. .++.... ....+|||||+..| .||..++.++
T Consensus 77 ~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 4799999999998874 78899999999999998665444 4444321 23469999999655 8999999998
Q ss_pred cCC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 629 APS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 629 ~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
+.. +++.++.|......... ....+.+|+|+|++.+.... ..+...++++|||||||++.+.+ ..+...+..
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQNE--CITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHHH--HHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred hccCCcEEEEEECCCCHHHHHH--HhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 753 55556666544333222 22357899999999987642 23334478999999999997654 333444433
Q ss_pred h--ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q psy1544 703 F--YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLL 780 (1331)
Q Consensus 703 ~--~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~l 780 (1331)
+ ....+.+++|||+- .++..+...
T Consensus 231 ~~~~~~~q~l~~SAT~~----~~~~~~~~~-------------------------------------------------- 256 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP----EEIQRMAGE-------------------------------------------------- 256 (434)
T ss_dssp TTSCSSCEEEEEESCCC----HHHHHHHHT--------------------------------------------------
T ss_pred cCCCCCceEEEEeccCC----HHHHHHHHH--------------------------------------------------
Confidence 2 23567899999962 111111110
Q ss_pred HHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHh
Q psy1544 781 RRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEE 860 (1331)
Q Consensus 781 RR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~ 860 (1331)
.+..... +.+... +... ..
T Consensus 257 ---------~l~~~~~--i~~~~~-----------------------~~~~-~~-------------------------- 275 (434)
T 2db3_A 257 ---------FLKNYVF--VAIGIV-----------------------GGAC-SD-------------------------- 275 (434)
T ss_dssp ---------TCSSCEE--EEESST-----------------------TCCC-TT--------------------------
T ss_pred ---------hccCCEE--EEeccc-----------------------cccc-cc--------------------------
Confidence 0111110 100000 0000 00
Q ss_pred hhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHH
Q psy1544 861 KFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDL 940 (1331)
Q Consensus 861 ~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~ 940 (1331)
+......+....|...|..++... +.++||||+....++.|...|...|+.+..+||++++.+|..+
T Consensus 276 ----------i~~~~~~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 276 ----------VKQTIYEVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp ----------EEEEEEECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHH
T ss_pred ----------cceEEEEeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHH
Confidence 000000011234666666666543 3469999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 941 LKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 941 i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
++.|+++. +. +|++|+++++|||++++++||+||++|++..|.||+||++|.|++..+ +.|+..
T Consensus 343 l~~F~~g~--~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~~ 406 (434)
T 2db3_A 343 LRDFKNGS--MK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFDP 406 (434)
T ss_dssp HHHHHTSS--CS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEECT
T ss_pred HHHHHcCC--Cc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEec
Confidence 99998644 33 589999999999999999999999999999999999999999986644 445553
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=3.4e-29 Score=299.10 Aligned_cols=312 Identities=15% Similarity=0.189 Sum_probs=214.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~ 631 (1331)
.+|+|||.+++.+++. +++.++|++++||+|||++++..+...+......+.+|||||+. +..||..++.+++. +
T Consensus 26 ~~~~~~Q~~~i~~~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLH--NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHC--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998874 12378899999999999998777666554444556799999997 45899999999874 3
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcch---HHHHHHHHhccC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHHC---KLTHILNTFYVA 706 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~s---k~~~~l~~~~~~ 706 (1331)
+.+..+.+..... ......+|+|+|++.+... ...+...+|++|||||||++.+... .....+..+...
T Consensus 104 ~~~~~~~~~~~~~------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
T 3pey_A 104 ITSQLIVPDSFEK------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177 (395)
T ss_dssp CCEEEESTTSSCT------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTT
T ss_pred eeEEEEecCchhh------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCC
Confidence 4455555443211 1234679999999998754 2333344789999999999865322 222223323235
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.+.++||||+-. .+..++..+
T Consensus 178 ~~~i~~SAT~~~----~~~~~~~~~------------------------------------------------------- 198 (395)
T 3pey_A 178 TQLVLFSATFAD----AVRQYAKKI------------------------------------------------------- 198 (395)
T ss_dssp CEEEEEESCCCH----HHHHHHHHH-------------------------------------------------------
T ss_pred cEEEEEEecCCH----HHHHHHHHh-------------------------------------------------------
Confidence 678999999731 111111000
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhcc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHV 866 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 866 (1331)
++.... + .... ..... . ...+.+
T Consensus 199 ----~~~~~~--~--~~~~---------------------~~~~~-~--------------~~~~~~------------- 221 (395)
T 3pey_A 199 ----VPNANT--L--ELQT---------------------NEVNV-D--------------AIKQLY------------- 221 (395)
T ss_dssp ----SCSCEE--E--CCCG---------------------GGCSC-T--------------TEEEEE-------------
T ss_pred ----CCCCeE--E--Eccc---------------------ccccc-c--------------cccEEE-------------
Confidence 000000 0 0000 00000 0 000000
Q ss_pred CCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcC
Q psy1544 867 GGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNA 946 (1331)
Q Consensus 867 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~ 946 (1331)
........|...|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 222 --------~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 222 --------MDCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp --------EECSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred --------EEcCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 00001234555666655543 45699999999999999999999999999999999999999999999985
Q ss_pred CCCCceEEEeeccccccccCCCCCCEEEEeCCCC------CccccccccccccccCCCCceEE
Q psy1544 947 PDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW------NPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 947 ~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w------Np~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+. +. +|++|+++++|||++++++||+||++| |+..+.|++||++|.|+...+.+
T Consensus 292 g~--~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 292 GR--SK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp TS--CC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred CC--CC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 43 34 589999999999999999999999999 99999999999999997654444
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=8.2e-30 Score=304.72 Aligned_cols=318 Identities=15% Similarity=0.198 Sum_probs=116.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~ 631 (1331)
.+|+|||.+++.+++. +.+++++++||+|||++++..+...+.......++|||||+. +..||..++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4899999999999886 678999999999999986665555444444455799999995 55899999999875 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~~~~~ 707 (1331)
+.+..+.|........... ...+|+|+|++.+.... ..+....|++|||||||++.+. ...+...+..+....
T Consensus 118 ~~~~~~~g~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEGL---RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp CCEEEECSSCCHHHHHHHH---HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eeEEEEeCCCchHHHHhhc---CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 6677777765443322221 25789999999987542 2344457899999999998443 334444554444566
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
++++|||||-. ++..++. .++..+.
T Consensus 195 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~------------------------------------- 219 (394)
T 1fuu_A 195 QVVLLSATMPN----DVLEVTT--------------KFMRNPV------------------------------------- 219 (394)
T ss_dssp EEEEECSSCCH----HHHHHHH--------------HHCCSCE-------------------------------------
T ss_pred eEEEEEEecCH----HHHHHHH--------------HhcCCCe-------------------------------------
Confidence 78999999832 1111110 1111110
Q ss_pred hhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccC
Q psy1544 788 ESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVG 867 (1331)
Q Consensus 788 ~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 867 (1331)
...+ .-.... .. .+..... .+
T Consensus 220 --------~~~~--~~~~~~---~~------------------------~~~~~~~----~~------------------ 240 (394)
T 1fuu_A 220 --------RILV--KKDELT---LE------------------------GIKQFYV----NV------------------ 240 (394)
T ss_dssp --------EEEE--CC----------------------------------------------------------------
T ss_pred --------EEEe--cCcccc---CC------------------------CceEEEE----Ec------------------
Confidence 0000 000000 00 0000000 00
Q ss_pred CCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 868 GSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 868 ~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
.....|...|..++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 241 ----------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 308 (394)
T 1fuu_A 241 ----------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC
Confidence 00011334444444432 345899999999999999999999999999999999999999999999853
Q ss_pred CCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 948 DSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 948 ~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
.+. +|++|+++++|+|++++++||+||++||+..+.|++||++|.|+...+.+ |++.+
T Consensus 309 --~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 309 --SSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ---------------------------------------------------------------
T ss_pred --CCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 333 58999999999999999999999999999999999999999998765444 45544
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=295.45 Aligned_cols=319 Identities=16% Similarity=0.229 Sum_probs=216.1
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHH-HHHHHHhcC-----------------CCCcEEEEeCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAL-ITYLMEKKK-----------------VNGPFLIIVPLS 616 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~l-i~~l~~~~~-----------------~~~p~LIV~P~s 616 (1331)
..|+|+|.+++..++. +.++|+..+||+|||++++.. +..+..... ....+|||||+.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 4799999999987764 788999999999999976544 444433321 123599999995
Q ss_pred -cHHHHHHHHHHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCC
Q psy1544 617 -TLSNWSLEFERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 617 -ll~qW~~E~~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn 691 (1331)
+..||.+++.+++. ++.+..+.|.......... ...+.+|+|+|++.+.... ..+....+++|||||||++..
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD--LERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH--HTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH--hhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 45899999999874 4667777776554433322 2346899999999987642 233344689999999999855
Q ss_pred cc--hHHHHHHHHhc-c---CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHH
Q psy1544 692 HH--CKLTHILNTFY-V---APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETI 765 (1331)
Q Consensus 692 ~~--sk~~~~l~~~~-~---~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~ 765 (1331)
.+ ..+...+.... . ..+.+++|||+-. ++..++.. ++.
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~--------------~~~------------------ 233 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLARD--------------FLD------------------ 233 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHHH--------------HCS------------------
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHHH--------------HcC------------------
Confidence 43 22223322111 1 3467999999721 11111100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHH
Q psy1544 766 LIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQL 845 (1331)
Q Consensus 766 ~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L 845 (1331)
... .+.+.-.. ... .
T Consensus 234 ---------------------------~~~--~~~~~~~~-----------------------~~~-~------------ 248 (417)
T 2i4i_A 234 ---------------------------EYI--FLAVGRVG-----------------------STS-E------------ 248 (417)
T ss_dssp ---------------------------SCE--EEEEC---------------------------CC-S------------
T ss_pred ---------------------------CCE--EEEeCCCC-----------------------CCc-c------------
Confidence 000 00000000 000 0
Q ss_pred HHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeE
Q psy1544 846 RKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKY 925 (1331)
Q Consensus 846 rk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~ 925 (1331)
...+.+ .......|...|..++... ..+.++||||+....++.+...|...|+.+
T Consensus 249 --~i~~~~----------------------~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~ 303 (417)
T 2i4i_A 249 --NITQKV----------------------VWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYAC 303 (417)
T ss_dssp --SEEEEE----------------------EECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred --CceEEE----------------------EEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCe
Confidence 000000 0011234666677777654 356799999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEE
Q psy1544 926 MRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 1005 (1331)
Q Consensus 926 ~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~r 1005 (1331)
..+||+++.++|..+++.|+++. +. +|+||+++++|||++++++||+||++||+..|.||+||++|.|+.. .++.
T Consensus 304 ~~~h~~~~~~~r~~~~~~f~~g~--~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~ 378 (417)
T 2i4i_A 304 TSIHGDRSQRDREEALHQFRSGK--SP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATS 378 (417)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTS--SC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEE
T ss_pred eEecCCCCHHHHHHHHHHHHcCC--CC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEE
Confidence 99999999999999999998543 34 5899999999999999999999999999999999999999999764 4455
Q ss_pred EeeCC
Q psy1544 1006 LMTVN 1010 (1331)
Q Consensus 1006 li~~~ 1010 (1331)
|+...
T Consensus 379 ~~~~~ 383 (417)
T 2i4i_A 379 FFNER 383 (417)
T ss_dssp EECGG
T ss_pred EEccc
Confidence 55543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=4.9e-28 Score=291.11 Aligned_cols=329 Identities=17% Similarity=0.221 Sum_probs=219.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc---C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA---P 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~---p 630 (1331)
..++|||.+++..++. ..+.++|++.+||+|||++++..+...+........+|||||+..+ .||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 4799999999998875 1247889999999999999766665554444445569999999755 88888888775 4
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCC--cch-HHHHHHHHhc
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKN--HHC-KLTHILNTFY 704 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn--~~s-k~~~~l~~~~ 704 (1331)
+..+....|...... ......+|+|+|++.+.... ..+....+++|||||||++.. ... .....+..+.
T Consensus 124 ~~~~~~~~~~~~~~~-----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 124 ELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp TCCEEEECTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred cceEEEeecCcchhh-----hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 566666665533211 12345789999999997643 334445789999999999854 222 2233333333
Q ss_pred cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 705 VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 784 (1331)
Q Consensus 705 ~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k 784 (1331)
...+.++||||+-. +++.++...
T Consensus 199 ~~~~~i~~SAT~~~----~~~~~~~~~----------------------------------------------------- 221 (412)
T 3fht_A 199 RNCQMLLFSATFED----SVWKFAQKV----------------------------------------------------- 221 (412)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHH-----------------------------------------------------
T ss_pred CCceEEEEEeecCH----HHHHHHHHh-----------------------------------------------------
Confidence 45678999999731 111111110
Q ss_pred HHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhh
Q psy1544 785 KEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSD 864 (1331)
Q Consensus 785 ~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~ 864 (1331)
++.... + .+.. . ...... ..+.+.
T Consensus 222 ------~~~~~~--~--~~~~---------------------~-~~~~~~--------------~~~~~~---------- 245 (412)
T 3fht_A 222 ------VPDPNV--I--KLKR---------------------E-EETLDT--------------IKQYYV---------- 245 (412)
T ss_dssp ------SSSCEE--E--CCCG---------------------G-GSSCTT--------------EEEEEE----------
T ss_pred ------cCCCeE--E--eecc---------------------c-cccccC--------------ceEEEE----------
Confidence 010000 0 0000 0 000000 000000
Q ss_pred ccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHh
Q psy1544 865 HVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 865 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~F 944 (1331)
.......|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|
T Consensus 246 -----------~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 312 (412)
T 3fht_A 246 -----------LCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 312 (412)
T ss_dssp -----------ECSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred -----------EcCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHH
Confidence 0001123556666666543 456999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCc------cccccccccccccCCCCceEEEEEeeCCCHHHHHHH
Q psy1544 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNP------HQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILA 1018 (1331)
Q Consensus 945 n~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp------~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~ 1018 (1331)
+++. +. +|++|+++++|||++++++||+||++|++ ..|.||+||++|.|+... ++.|+.. .-+..++.
T Consensus 313 ~~g~--~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~-~~~~~~~~ 386 (412)
T 3fht_A 313 REGK--EK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS-KHSMNILN 386 (412)
T ss_dssp HTTS--CS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS-HHHHHHHH
T ss_pred HCCC--Cc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCce--EEEEEcC-hhhHHHHH
Confidence 9544 33 58999999999999999999999999876 589999999999997654 4444433 22344444
Q ss_pred HHHH
Q psy1544 1019 AARY 1022 (1331)
Q Consensus 1019 ~~~~ 1022 (1331)
....
T Consensus 387 ~i~~ 390 (412)
T 3fht_A 387 RIQE 390 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1.2e-27 Score=288.79 Aligned_cols=319 Identities=15% Similarity=0.195 Sum_probs=221.3
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-C
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-S 631 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~ 631 (1331)
+.+++|||.+++..++. +.++|+..+||+|||+.++..+..+. ...+.+|||||+..| .||..+|.+|+. +
T Consensus 19 ~~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 91 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 91 (414)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCC
Confidence 44799999999998774 67899999999999996665555444 234569999999555 999999999986 7
Q ss_pred CcEEEecCChhHH--HHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccC-------------CcchH-
Q psy1544 632 VNVVAYKGSPHLR--KTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMK-------------NHHCK- 695 (1331)
Q Consensus 632 ~~v~~~~g~~~~r--~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrik-------------n~~sk- 695 (1331)
+.+..+.|..... ......+..+.++|+|+|++.+......+....+++|||||||++. +....
T Consensus 92 ~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~ 171 (414)
T 3oiy_A 92 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 171 (414)
T ss_dssp CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHH
T ss_pred ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHH
Confidence 7888888876542 1222233445689999999999766555555589999999999873 22223
Q ss_pred HHHHHHHhc-----------cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHH
Q psy1544 696 LTHILNTFY-----------VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEET 764 (1331)
Q Consensus 696 ~~~~l~~~~-----------~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~ 764 (1331)
+...+..+. ...+.+++|||+........+. ..++.... ...
T Consensus 172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~----------------~~~~~~~~--~~~--------- 224 (414)
T 3oiy_A 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF----------------RDLLNFTV--GRL--------- 224 (414)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH----------------HHHHSCCS--SCC---------
T ss_pred HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH----------------HHhhccCc--Ccc---------
Confidence 333343332 4567899999976554321110 00000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHH
Q psy1544 765 ILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQ 844 (1331)
Q Consensus 765 ~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 844 (1331)
...+....
T Consensus 225 ------------------------~~~~~~i~------------------------------------------------ 232 (414)
T 3oiy_A 225 ------------------------VSVARNIT------------------------------------------------ 232 (414)
T ss_dssp ------------------------CCCCCSEE------------------------------------------------
T ss_pred ------------------------ccccccch------------------------------------------------
Confidence 00000000
Q ss_pred HHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCe
Q psy1544 845 LRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFK 924 (1331)
Q Consensus 845 Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~ 924 (1331)
..+....|...|..++.. .+.++||||+....++.+...|...|+.
T Consensus 233 -------------------------------~~~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~ 278 (414)
T 3oiy_A 233 -------------------------------HVRISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFN 278 (414)
T ss_dssp -------------------------------EEEESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred -------------------------------heeeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 000111355566666655 3479999999999999999999999999
Q ss_pred EE-EEcCCCCHHHHHHHHHHhcCCCCCceEEEee----ccccccccCCCC-CCEEEEeCCC--CCccccccccccccccC
Q psy1544 925 YM-RLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS----TRAGGLGLNLQT-ADTVIIFDSD--WNPHQDLQAQDRAHRIG 996 (1331)
Q Consensus 925 ~~-~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS----T~aggeGLNL~~-ad~VI~~D~~--wNp~~~~QaiGRa~RiG 996 (1331)
+. .+||. +|. ++.|+++ .+.| |++ |+++++|||+++ +++||+||++ +|+..|.|++||++|.|
T Consensus 279 ~~~~~h~~----~r~--~~~f~~g--~~~v-Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 279 VGETWSEF----EKN--FEDFKVG--KINI-LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp EEESSSCH----HHH--HHHHHTT--SCSE-EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred eehhhcCc----chH--HHHHhCC--CCeE-EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 98 99984 444 9999954 4555 667 999999999999 9999999999 99999999999999999
Q ss_pred CC--CceEEEEEeeCCCHHHHHHHHHHHHHH
Q psy1544 997 QK--NEVRVLRLMTVNSVEERILAAARYKLN 1025 (1331)
Q Consensus 997 Q~--k~V~V~rli~~~TiEE~I~~~~~~K~~ 1025 (1331)
+. +...++.|+ -|..++....+.+.
T Consensus 350 ~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 350 NGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp TTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 85 566666666 23445554444443
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.96 E-value=6.7e-28 Score=298.72 Aligned_cols=305 Identities=18% Similarity=0.207 Sum_probs=215.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 633 (1331)
..++|+|.+++..++. +.++|+..+||+|||++++..+. .. .+.+|||+|+ +++.+|...+..+. +.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~~----~g~~lvi~P~~aL~~q~~~~l~~~g--i~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--LL----NGLTVVVSPLISLMKDQVDQLQANG--VA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--HS----SSEEEEECSCHHHHHHHHHHHHHTT--CC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--Hh----CCCEEEECChHHHHHHHHHHHHHcC--Cc
Confidence 5799999999998884 77899999999999987653332 11 3569999999 45589999999874 45
Q ss_pred EEEecCChh--HHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcch---HHHHH---HHHh
Q psy1544 634 VVAYKGSPH--LRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHHC---KLTHI---LNTF 703 (1331)
Q Consensus 634 v~~~~g~~~--~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~s---k~~~~---l~~~ 703 (1331)
+..+.|... ...........+..+|+++|++.+.... ..+....+++|||||||++...+. ..+.. +...
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 555555533 2223334445677999999999996431 224445789999999999965431 11111 2222
Q ss_pred ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 704 YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 783 (1331)
Q Consensus 704 ~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~ 783 (1331)
+....+++|||||......++...+.+-.+.++
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~----------------------------------------------- 204 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ----------------------------------------------- 204 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-----------------------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-----------------------------------------------
Confidence 345778999999864433444333322111000
Q ss_pred HHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhh
Q psy1544 784 KKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFS 863 (1331)
Q Consensus 784 k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 863 (1331)
...+. .|.+.
T Consensus 205 ----------------~~~~~----------------------------------------------r~~l~-------- 214 (523)
T 1oyw_A 205 ----------------ISSFD----------------------------------------------RPNIR-------- 214 (523)
T ss_dssp ----------------ECCCC----------------------------------------------CTTEE--------
T ss_pred ----------------eCCCC----------------------------------------------CCceE--------
Confidence 00000 00000
Q ss_pred hccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy1544 864 DHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKK 943 (1331)
Q Consensus 864 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~ 943 (1331)
..+.....++..|.+++... .+.++||||..+..++.+...|...|+.+..+||+++.++|..+++.
T Consensus 215 -----------~~v~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~ 281 (523)
T 1oyw_A 215 -----------YMLMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEK 281 (523)
T ss_dssp -----------EEEEECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred -----------EEEEeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHH
Confidence 00001123444555555443 56799999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 944 FNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 944 Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
|.+++ +. +||+|.++|+|||++++++||+||++||+..|.|++||++|.|+...+.++
T Consensus 282 f~~g~--~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 282 FQRDD--LQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HHTTS--CS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHcCC--Ce-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 99644 34 589999999999999999999999999999999999999999987765543
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=5.1e-27 Score=293.89 Aligned_cols=310 Identities=17% Similarity=0.221 Sum_probs=212.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p~~~ 633 (1331)
..++|+|.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+ +++.||...|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 4799999999998885 778999999999999875444321 24579999999 5558999999998 566
Q ss_pred EEEecCChhHH--HHHHHHh--hccCccEEEeeHHHHHhc---cCc----ccccCccEEEEeCCcccCCcc----hH--H
Q psy1544 634 VVAYKGSPHLR--KTLQAQM--KASKFNVLLTTYEYVIKD---KGP----LAKLHWKYMIIDEGHRMKNHH----CK--L 696 (1331)
Q Consensus 634 v~~~~g~~~~r--~~~~~~~--~~~~~~VvItTye~l~~~---~~~----l~~~~~~~vIiDEaHrikn~~----sk--~ 696 (1331)
+..+.|..... ....... ..+..+|+++|++.+... ... +....+++|||||||++...+ .. .
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 66676654322 2222222 356789999999988542 111 122378999999999986532 11 1
Q ss_pred HHHHHHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHH
Q psy1544 697 THILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR 776 (1331)
Q Consensus 697 ~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~ 776 (1331)
...+...+....+++|||||-.....++...+.+
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~---------------------------------------------- 224 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCI---------------------------------------------- 224 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC----------------------------------------------
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC----------------------------------------------
Confidence 1234444456788999999843222222222211
Q ss_pred HHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchh
Q psy1544 777 PFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQ 856 (1331)
Q Consensus 777 p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~ 856 (1331)
+.. .++...+. .|.+..
T Consensus 225 ---------------~~~--~~~~~~~~----------------------------------------------r~nl~~ 241 (591)
T 2v1x_A 225 ---------------EKC--FTFTASFN----------------------------------------------RPNLYY 241 (591)
T ss_dssp ---------------CSC--EEEECCCC----------------------------------------------CTTEEE
T ss_pred ---------------CCc--EEEecCCC----------------------------------------------CcccEE
Confidence 100 00000000 000000
Q ss_pred hhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHH
Q psy1544 857 NIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAED 936 (1331)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~e 936 (1331)
. +.... .....++..|.+++... ..+.++||||..+..++.|...|...|+.+..+||+++..+
T Consensus 242 ~-------------v~~~~--~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 242 E-------------VRQKP--SNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPED 305 (591)
T ss_dssp E-------------EEECC--SSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred E-------------EEeCC--CcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHH
Confidence 0 00000 00012333344444322 25679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEE
Q psy1544 937 RGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 937 R~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
|..+++.|..+. +. +||+|.++|+|||++++++||+||+++|...|.|++||++|.|+...+.++
T Consensus 306 R~~~~~~F~~g~--~~-VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 306 KTTVHRKWSANE--IQ-VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHHHHHTTS--SS-EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHHHHcCC--Ce-EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999998644 34 589999999999999999999999999999999999999999987665554
No 31
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=1.9e-26 Score=307.95 Aligned_cols=312 Identities=16% Similarity=0.189 Sum_probs=220.1
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCC--ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNL--NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~--~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
++.+++|||.+++.+++..+.++. ++|++++||+|||++++..+...... ...+|||||+..| .||..+|.+++
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEechHHHHHHHHHHHHHHh
Confidence 456899999999999998766665 88999999999999987655544332 3469999999755 89999999988
Q ss_pred CC--CcEEEecCCh--hHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc
Q psy1544 630 PS--VNVVAYKGSP--HLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV 705 (1331)
Q Consensus 630 p~--~~v~~~~g~~--~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~ 705 (1331)
.. +.+..+.|.. ..+......+..+..+|+|+|++.+.+.. ...+|++|||||||++.. .....+..+..
T Consensus 677 ~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~---~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~ 750 (1151)
T 2eyq_A 677 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRFGV---RHKERIKAMRA 750 (1151)
T ss_dssp TTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGSCH---HHHHHHHHHHT
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc---cccccceEEEechHhcCh---HHHHHHHHhcC
Confidence 64 5666666643 23333344455677999999999886542 234789999999999743 33455555545
Q ss_pred CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 706 APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 785 (1331)
Q Consensus 706 ~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~ 785 (1331)
..++|+|||||..+.+...+. .+
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~---~~------------------------------------------------------ 773 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMS---GM------------------------------------------------------ 773 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHT---TT------------------------------------------------------
T ss_pred CCCEEEEcCCCChhhHHHHHh---cC------------------------------------------------------
Confidence 678999999997543211100 00
Q ss_pred HHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhc
Q psy1544 786 EVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 786 ~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 865 (1331)
. ...++ ... . .... +
T Consensus 774 ------~--~~~~i--~~~-------------------~--~~r~---------------------~------------- 788 (1151)
T 2eyq_A 774 ------R--DLSII--ATP-------------------P--ARRL---------------------A------------- 788 (1151)
T ss_dssp ------S--EEEEC--CCC-------------------C--CBCB---------------------C-------------
T ss_pred ------C--CceEE--ecC-------------------C--CCcc---------------------c-------------
Confidence 0 00000 000 0 0000 0
Q ss_pred cCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHH
Q psy1544 866 VGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAEDRGDLLKK 943 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~eR~~~i~~ 943 (1331)
....+....+...+..++..+ ..|.+|+|||+.+..++.+...|... ++.+..+||+++..+|..++++
T Consensus 789 --------i~~~~~~~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~ 859 (1151)
T 2eyq_A 789 --------VKTFVREYDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 859 (1151)
T ss_dssp --------EEEEEEECCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHH
T ss_pred --------cEEEEecCCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 000000011122223333332 35779999999999999999999887 8999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccccCCCCCCEEEEeCC-CCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 944 FNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDS-DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 944 Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~-~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
|+++ .+. +||||.++++|||++++++||++++ .|++..+.|++||++|.|+.. ++|.++..
T Consensus 860 F~~g--~~~-VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~ 921 (1151)
T 2eyq_A 860 FHHQ--RFN-VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPH 921 (1151)
T ss_dssp HHTT--SCC-EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECC
T ss_pred HHcC--CCc-EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECC
Confidence 9854 444 5899999999999999999999999 689999999999999999755 44545544
No 32
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=5.5e-26 Score=286.07 Aligned_cols=338 Identities=17% Similarity=0.226 Sum_probs=216.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC----CCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK----VNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~----~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
..|+|||.+++..++. ..+.++|+..+||+|||++++..+...+.... ....+|||||+..| .||..++.+++
T Consensus 42 ~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 4699999999988772 23667899999999999986665555444332 22359999999555 89999999874
Q ss_pred ------CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc---ccccCccEEEEeCCcccCCcc--hHHHH
Q psy1544 630 ------PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP---LAKLHWKYMIIDEGHRMKNHH--CKLTH 698 (1331)
Q Consensus 630 ------p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaHrikn~~--sk~~~ 698 (1331)
+...+..+.|......... .......+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~~~~~-~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFRAAMN-KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHH-HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hhcccccceEEEEEECCccHHHHHH-HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 3455666666654443332 23345689999999998764322 122357999999999997653 22222
Q ss_pred HHHHhcc-------CCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 699 ILNTFYV-------APHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 699 ~l~~~~~-------~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
++..+.. ..++++||||+-. ... .++..+
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~---~~~~~~---------------------------------------- 234 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDD-KVQ---KLANNI---------------------------------------- 234 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-HHH---HHTTTT----------------------------------------
T ss_pred HHHHhhhhhcccccCceEEEEeccCCh-HHH---HHHHHH----------------------------------------
Confidence 3222211 3468999999631 111 111100
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
+.......+... . ... ..... ...+
T Consensus 235 -------------------l~~~~~~~~~~~-~-------------------~~~--~~~~~--------------~i~~ 259 (579)
T 3sqw_A 235 -------------------MNKKECLFLDTV-D-------------------KNE--PEAHE--------------RIDQ 259 (579)
T ss_dssp -------------------CCSSEEEEEESS-C-------------------SSS--CSSCT--------------TEEE
T ss_pred -------------------cCCCceEEEeec-C-------------------ccc--ccccc--------------ccce
Confidence 111111111000 0 000 00000 0000
Q ss_pred ccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhc---CCeEE
Q psy1544 852 PFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSYR---GFKYM 926 (1331)
Q Consensus 852 p~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~---g~~~~ 926 (1331)
.+.. .. .....+...+..++..+. ..+.++||||.....++.+...|... |+.+.
T Consensus 260 ~~~~-----------------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~ 319 (579)
T 3sqw_A 260 SVVI-----------------SE---KFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPIL 319 (579)
T ss_dssp EEEE-----------------ES---STTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEE
T ss_pred EEEE-----------------ec---chhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEE
Confidence 0000 00 000112222223332222 45679999999999999999999887 99999
Q ss_pred EEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEE
Q psy1544 927 RLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRL 1006 (1331)
Q Consensus 927 ~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rl 1006 (1331)
.+||+++..+|..+++.|+.+ .+. +||+|+++++|||++++++||+||++|++..|+|++||++|.|+...+ +.|
T Consensus 320 ~~hg~~~~~~R~~~~~~F~~g--~~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~~ 394 (579)
T 3sqw_A 320 EFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VLF 394 (579)
T ss_dssp EESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EEE
T ss_pred EecCCCCHHHHHHHHHHhhcC--CCe-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--EEE
Confidence 999999999999999999853 444 589999999999999999999999999999999999999999976544 444
Q ss_pred eeCCCHHHHHHHHHH
Q psy1544 1007 MTVNSVEERILAAAR 1021 (1331)
Q Consensus 1007 i~~~TiEE~I~~~~~ 1021 (1331)
++.. |...+....
T Consensus 395 ~~~~--e~~~~~~l~ 407 (579)
T 3sqw_A 395 ICKD--ELPFVRELE 407 (579)
T ss_dssp EEGG--GHHHHHHHH
T ss_pred Eccc--HHHHHHHHH
Confidence 5553 444444433
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.9e-27 Score=292.79 Aligned_cols=314 Identities=16% Similarity=0.166 Sum_probs=191.1
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcCCCcE
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAPSVNV 634 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p~~~v 634 (1331)
.|++||.+++..++.. .+.++|+..+||+|||++++..+...+......+.+|||||.. ++.||.++|.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 6999999999987741 2478899999999999997776666655554455799999996 559999999999865444
Q ss_pred EEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCc---chHHHHHHHHhccCCce
Q psy1544 635 VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 635 ~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~~~~~~r 709 (1331)
.+..+....... ......+|+|+|++.+... ...+....+++|||||||++... .......+..+....+.
T Consensus 219 ~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (508)
T 3fho_A 219 KTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 294 (508)
T ss_dssp CEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEE
T ss_pred eEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeE
Confidence 333332211111 1233689999999988763 22333446899999999998652 22333333333335667
Q ss_pred eeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1544 710 LLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 789 (1331)
Q Consensus 710 llLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~ 789 (1331)
++|||||- +...++.. ++.
T Consensus 295 i~lSAT~~-~~~~~~~~------------------~~~------------------------------------------ 313 (508)
T 3fho_A 295 VLFSATFS-ERVEKYAE------------------RFA------------------------------------------ 313 (508)
T ss_dssp EEEESCCS-THHHHHHH------------------HHS------------------------------------------
T ss_pred EEEeCCCC-HHHHHHHH------------------Hhc------------------------------------------
Confidence 99999973 11111111 110
Q ss_pred hCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCC
Q psy1544 790 QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGS 869 (1331)
Q Consensus 790 ~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 869 (1331)
+.... +.+.-.. ... ....+.+.
T Consensus 314 --~~~~~--i~~~~~~-----------------------~~~---------------~~~~~~~~--------------- 336 (508)
T 3fho_A 314 --PNANE--IRLKTEE-----------------------LSV---------------EGIKQLYM--------------- 336 (508)
T ss_dssp --TTCEE--ECCCCCC------------------------------------------CCCCEEE---------------
T ss_pred --CCCeE--EEecccc-----------------------CCc---------------ccceEEEE---------------
Confidence 00000 0000000 000 00000000
Q ss_pred CcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q psy1544 870 GIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDS 949 (1331)
Q Consensus 870 ~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~ 949 (1331)
.......|...+..++... .+.++||||+....+..+...|...|+.+..+||+++..+|..+++.|+++.
T Consensus 337 ------~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~- 407 (508)
T 3fho_A 337 ------DCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT- 407 (508)
T ss_dssp ------EC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS-
T ss_pred ------ECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC-
Confidence 0001234555566665543 4569999999999999999999999999999999999999999999998544
Q ss_pred CceEEEeeccccccccCCCCCCEEEEeCCC------CCccccccccccccccCCCCceEEE
Q psy1544 950 EYFIFVLSTRAGGLGLNLQTADTVIIFDSD------WNPHQDLQAQDRAHRIGQKNEVRVL 1004 (1331)
Q Consensus 950 ~~~v~LlST~aggeGLNL~~ad~VI~~D~~------wNp~~~~QaiGRa~RiGQ~k~V~V~ 1004 (1331)
+. +|++|+++++|+|++++++||+||++ +++..+.|++||++|.|+...+.++
T Consensus 408 -~~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 408 -SK-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp -CC-CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred -Ce-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 33 58999999999999999999999999 7899999999999999976655544
No 34
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=2.1e-25 Score=280.04 Aligned_cols=328 Identities=17% Similarity=0.240 Sum_probs=210.5
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC----CCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK----VNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~----~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
..|+|||.+++..++. ..+.++|++.+||+|||++++..+...+.... ....+|||||+..| .||..+|.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 4699999999988772 23567899999999999987665555444332 12359999999655 89999999863
Q ss_pred ------CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc---ccccCccEEEEeCCcccCCcc--hHHHH
Q psy1544 630 ------PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP---LAKLHWKYMIIDEGHRMKNHH--CKLTH 698 (1331)
Q Consensus 630 ------p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~---l~~~~~~~vIiDEaHrikn~~--sk~~~ 698 (1331)
+...+..+.|......... .......+|+|+|++.+...... ...-.+++|||||||++...+ ..+..
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMN-KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHH-HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHHH-HHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 2345666666554443332 22345789999999998754321 112257999999999986543 22222
Q ss_pred HHHHhc-------cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 699 ILNTFY-------VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 699 ~l~~~~-------~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
.+..+. ...++++||||+-. ... .++..+
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~---~~~~~~---------------------------------------- 285 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDD-KVQ---KLANNI---------------------------------------- 285 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-HHH---HHTTTT----------------------------------------
T ss_pred HHHhhhhccccCccCceEEEEEccCCH-HHH---HHHHHh----------------------------------------
Confidence 222221 13468999999731 111 111100
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH 851 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~h 851 (1331)
+.......+...-. .. ...... ..+
T Consensus 286 -------------------~~~~~~~~~~~~~~--------------------~~--~~~~~~--------------~~~ 310 (563)
T 3i5x_A 286 -------------------MNKKECLFLDTVDK--------------------NE--PEAHER--------------IDQ 310 (563)
T ss_dssp -------------------CCSSEEEEEESSCS--------------------SS--CSSCTT--------------EEE
T ss_pred -------------------cCCCceEEEeccCC--------------------CC--cccccc--------------Cce
Confidence 00000101000000 00 000000 000
Q ss_pred ccchhhhHhhhhhccCCCCcccCCccccccch-hHHHHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhc---CCeE
Q psy1544 852 PFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGK-FELLDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSYR---GFKY 925 (1331)
Q Consensus 852 p~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K-~~~L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~---g~~~ 925 (1331)
.+. .. .....+ ...+..++..+. ..+.++||||.....++.+...|... |+.+
T Consensus 311 ~~~-----------------~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v 369 (563)
T 3i5x_A 311 SVV-----------------IS----EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPI 369 (563)
T ss_dssp EEE-----------------EE----SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCE
T ss_pred EEE-----------------EC----chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceE
Confidence 000 00 000011 112222222222 45679999999999999999999887 9999
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEE
Q psy1544 926 MRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 1005 (1331)
Q Consensus 926 ~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~r 1005 (1331)
..+||+++..+|..+++.|+++ .+. +||+|+++++|||++++++||+||+++++..|+|++||++|.|+... ++.
T Consensus 370 ~~~h~~~~~~~R~~~~~~f~~g--~~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~ 444 (563)
T 3i5x_A 370 LEFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SVL 444 (563)
T ss_dssp EEESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EEE
T ss_pred EEecCCCCHHHHHHHHHHHhcC--CCC-EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce--EEE
Confidence 9999999999999999999853 444 58999999999999999999999999999999999999999996544 444
Q ss_pred EeeCC
Q psy1544 1006 LMTVN 1010 (1331)
Q Consensus 1006 li~~~ 1010 (1331)
|++..
T Consensus 445 ~~~~~ 449 (563)
T 3i5x_A 445 FICKD 449 (563)
T ss_dssp EEEGG
T ss_pred EEchh
Confidence 55554
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=3.7e-27 Score=290.10 Aligned_cols=314 Identities=19% Similarity=0.237 Sum_probs=109.7
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHH---c
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERW---A 629 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~---~ 629 (1331)
...++|+|.+++..++. ..+.+.|++.+||+|||++++..+...+........+|||||+..| .||...+.++ .
T Consensus 112 ~~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp CCSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 35799999999998874 2247789999999999998765555444443334469999999766 7887766655 4
Q ss_pred CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCc---chHHHHHHHHh
Q psy1544 630 PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTF 703 (1331)
Q Consensus 630 p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~ 703 (1331)
+.+.+.+..+...... ......+|+|+|++.+.... ..+...++++|||||||++... .......+..+
T Consensus 190 ~~~~~~~~~~~~~~~~-----~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 190 PELKLAYAVRGNKLER-----GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TTCCEEEESTTCCCCT-----TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CCceEEEEeCCccccc-----cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 5666666655432211 11235689999999997643 3343457899999999998542 22222333333
Q ss_pred ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 704 YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 783 (1331)
Q Consensus 704 ~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~ 783 (1331)
....+.+++||||-. +++.+...+
T Consensus 265 ~~~~~~i~~SAT~~~----~~~~~~~~~---------------------------------------------------- 288 (479)
T 3fmp_B 265 PRNCQMLLFSATFED----SVWKFAQKV---------------------------------------------------- 288 (479)
T ss_dssp CTTSEEEEEESCCCH----HHHHHHHHH----------------------------------------------------
T ss_pred CccceEEEEeCCCCH----HHHHHHHHH----------------------------------------------------
Confidence 345678999999832 222211111
Q ss_pred HHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhh
Q psy1544 784 KKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFS 863 (1331)
Q Consensus 784 k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~ 863 (1331)
++......+... . .. ...+.+.-..|+
T Consensus 289 -------~~~~~~i~~~~~--~--~~-----------------------------~~~~~~~~~~~~------------- 315 (479)
T 3fmp_B 289 -------VPDPNVIKLKRE--E--ET-----------------------------LDTIKQYYVLCS------------- 315 (479)
T ss_dssp -------SSSEEEEEEC---------------------------------------------------------------
T ss_pred -------cCCCeEEecccc--c--cC-----------------------------cCCceEEEEEeC-------------
Confidence 111111111000 0 00 000000000000
Q ss_pred hccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Q psy1544 864 DHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKK 943 (1331)
Q Consensus 864 ~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~ 943 (1331)
....|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.
T Consensus 316 ---------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~ 378 (479)
T 3fmp_B 316 ---------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 378 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHH
Confidence 0112334444444332 34589999999999999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCc------cccccccccccccCCCCceEE
Q psy1544 944 FNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNP------HQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 944 Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp------~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
|+++ .+. +||+|+++++|||++++++||+||++|++ ..|.||+||++|.|+...+.+
T Consensus 379 f~~g--~~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 379 FREG--KEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHcC--CCc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 9854 344 58999999999999999999999999865 699999999999997655443
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.93 E-value=4.7e-26 Score=290.98 Aligned_cols=306 Identities=18% Similarity=0.219 Sum_probs=208.3
Q ss_pred CccHHHHHHHHHHHHHhcCC--CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--
Q psy1544 556 KLKEYQIKGLEWMVSLFNNN--LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-- 630 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~--~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-- 630 (1331)
+|+++|.+++..++..+..+ .++||..+||+|||++++..+...+..+ ..+|||||+..| .||..+|.+|+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998865544 4789999999999999887776665543 459999999665 899999999986
Q ss_pred CCcEEEecCChhHH--HHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCc
Q psy1544 631 SVNVVAYKGSPHLR--KTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPH 708 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r--~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~ 708 (1331)
++.+.+++|+.... ......+..+..+|+|+|++.+.... ...++++|||||+|++.... ...+.......+
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~---~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~~ 518 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDV---HFKNLGLVIIDEQHRFGVKQ---REALMNKGKMVD 518 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCC---CCSCCCEEEEESCCCC--------CCCCSSSSCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhh---hccCCceEEecccchhhHHH---HHHHHHhCCCCC
Confidence 57788888875433 23334455667999999999886532 23467999999999984322 111112223567
Q ss_pred eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1544 709 RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 788 (1331)
Q Consensus 709 rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~ 788 (1331)
.|+|||||+...+. +..+-... . .+.
T Consensus 519 vL~mSATp~p~tl~----~~~~g~~~----------------------~----------------------------s~i 544 (780)
T 1gm5_A 519 TLVMSATPIPRSMA----LAFYGDLD----------------------V----------------------------TVI 544 (780)
T ss_dssp EEEEESSCCCHHHH----HHHTCCSS----------------------C----------------------------EEE
T ss_pred EEEEeCCCCHHHHH----HHHhCCcc----------------------e----------------------------eee
Confidence 89999999653211 10000000 0 000
Q ss_pred hhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCC
Q psy1544 789 SQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGG 868 (1331)
Q Consensus 789 ~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 868 (1331)
..+|.... |.
T Consensus 545 ~~~p~~r~-------------------------------------------------------~i--------------- 554 (780)
T 1gm5_A 545 DEMPPGRK-------------------------------------------------------EV--------------- 554 (780)
T ss_dssp CCCCSSCC-------------------------------------------------------CC---------------
T ss_pred eccCCCCc-------------------------------------------------------ce---------------
Confidence 00111000 00
Q ss_pred CCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHH--------HHHHHHHHHHh---cCCeEEEEcCCCCHHHH
Q psy1544 869 SGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQ--------LMNILEDYFSY---RGFKYMRLDGTTKAEDR 937 (1331)
Q Consensus 869 ~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~--------~ld~L~~~L~~---~g~~~~~idG~~~~~eR 937 (1331)
...+....+...+...+.+....|++++|||.... .+..+...|.. .|+.+..+||+++..+|
T Consensus 555 ------~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR 628 (780)
T 1gm5_A 555 ------QTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEK 628 (780)
T ss_dssp ------EECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCS
T ss_pred ------EEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHH
Confidence 00000011223334444444567789999998653 46677788877 47899999999999999
Q ss_pred HHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCC-CccccccccccccccCCCCceEE
Q psy1544 938 GDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 938 ~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~w-Np~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
..+++.|+++. +. +||||+++++|||++++++||++|+++ +...+.|++||++|.|+...|.+
T Consensus 629 ~~v~~~F~~G~--~~-ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 629 DRVMLEFAEGR--YD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHHHHHHTTTS--SS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred HHHHHHHHCCC--Ce-EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 99999999644 44 589999999999999999999999984 78899999999999997765444
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=286.59 Aligned_cols=361 Identities=14% Similarity=0.122 Sum_probs=221.3
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP 630 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p 630 (1331)
..+.+|++||.+++.++.. +.++|++.+||+|||+++...+...+.. ++.+|||+|+. +..||..+|.++++
T Consensus 82 ~~~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 3456799999999998875 7789999999999999986666555433 35699999995 55899999999887
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccC
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~ 706 (1331)
.+.++.|.... ....+|+|+|++.+.... +......|++|||||||++.+.. ......+..+...
T Consensus 155 --~vglltGd~~~---------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 --DVGLMTGDITI---------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp --CEEEECSSCEE---------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred --CEEEEeCCCcc---------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 56667776432 235789999999886532 22222368999999999997653 2333444444456
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.+.|+||||+- | ..+ |..|+............
T Consensus 224 ~~il~LSATi~-n-~~e------------------~a~~l~~~~~~~~~vi~---------------------------- 255 (1010)
T 2xgj_A 224 VRYVFLSATIP-N-AME------------------FAEWICKIHSQPCHIVY---------------------------- 255 (1010)
T ss_dssp CEEEEEECCCT-T-HHH------------------HHHHHHHHHTSCEEEEE----------------------------
T ss_pred CeEEEEcCCCC-C-HHH------------------HHHHHHhhcCCCeEEEe----------------------------
Confidence 78899999952 2 222 33333211000000000
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHH-hcCCccchhhhHhhhhhc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRK-LCNHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk-~~~hp~l~~~~~~~~~~~ 865 (1331)
...-|......+...-. .......+. .+......+...+..+.. ....+ ..
T Consensus 256 -~~~rp~pl~~~~~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~----------~~- 307 (1010)
T 2xgj_A 256 -TNFRPTPLQHYLFPAHG-----------DGIYLVVDE-----KSTFREENFQKAMASISNQIGDDP----------NS- 307 (1010)
T ss_dssp -ECCCSSCEEEEEEETTS-----------SCCEEEECT-----TCCBCHHHHHHHHHTCC--------------------
T ss_pred -cCCCcccceEEEEecCC-----------cceeeeecc-----ccccchHHHHHHHHHHhhhhcccc----------cc-
Confidence 00011111111111000 000000000 000000111111100000 00000 00
Q ss_pred cCCCCcccCCccccc---cc-hhHHHHHhhhhhhcC-CCeeEEEeccHHHHHHHHHHHHhcCCe----------------
Q psy1544 866 VGGSGIVSGPDLYRV---SG-KFELLDRILPKLKST-GHRVLLFCQMTQLMNILEDYFSYRGFK---------------- 924 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~---s~-K~~~L~~lL~~l~~~-g~KVLIFsq~~~~ld~L~~~L~~~g~~---------------- 924 (1331)
....+... ..... .+ ....+..++..+... +.++||||..+..++.+...|...|+.
T Consensus 308 ~~~~g~~~--~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 385 (1010)
T 2xgj_A 308 TDSRGKKG--QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI 385 (1010)
T ss_dssp -----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccc--cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 00000000 00000 00 023344444444443 458999999999999999988765442
Q ss_pred -----------------------EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eC
Q psy1544 925 -----------------------YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FD 977 (1331)
Q Consensus 925 -----------------------~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D 977 (1331)
+..+||+++..+|..+++.|+++ .+. +|+||.++++|||++++++||. ||
T Consensus 386 ~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G--~ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd 462 (1010)
T 2xgj_A 386 ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG--FLK-VLFATETFSIGLNMPAKTVVFTSVRKWD 462 (1010)
T ss_dssp TTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT--CCS-EEEEEGGGGGSTTCCBSEEEESCSEEEC
T ss_pred HhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC--CCc-EEEEehHhhccCCCCCceEEEeCCcccC
Confidence 78899999999999999999954 444 4899999999999999999999 99
Q ss_pred C----CCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 978 S----DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 978 ~----~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
. +||+..|.|++||++|.|+....++|.++..+.
T Consensus 463 ~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 463 GQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp SSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred CcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 9 999999999999999999988889998888663
No 38
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=221.92 Aligned_cols=113 Identities=55% Similarity=0.825 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
.++.+.+.|..|++.|++++|..||.++++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVESG 1326 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~ 1326 (1331)
||++||++||.||.+|..|+++|++.++++.+.
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps~ 122 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGPSS 122 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999988753
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-24 Score=286.68 Aligned_cols=362 Identities=14% Similarity=0.108 Sum_probs=219.0
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~ 631 (1331)
....|++||.+++..+. ++.++|++.+||+|||++++..+...+.. .+.+||++|+..| .||..+|.+++.
T Consensus 181 ~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~- 252 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 252 (1108)
T ss_dssp CSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS-
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC-
Confidence 34579999999998765 47889999999999999987766665533 3569999999655 899999999987
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~~ 707 (1331)
.+.++.|... .....+|+|+|++.+.... +.....++++|||||||++.... ..+...+..+....
T Consensus 253 -~VglltGd~~---------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 -DVGLMTGDIT---------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp -SEEEECSSCB---------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred -CccEEeCccc---------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 4555666543 2346899999999887632 11112257999999999997643 23334444444567
Q ss_pred ceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 708 HRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 787 (1331)
Q Consensus 708 ~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v 787 (1331)
+.|+||||. .|. .++...+..+... +......
T Consensus 323 qvl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~~-------------------------------- 354 (1108)
T 3l9o_A 323 RYVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVYT-------------------------------- 354 (1108)
T ss_dssp EEEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEEE--------------------------------
T ss_pred eEEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEec--------------------------------
Confidence 789999993 333 3332222211110 0000000
Q ss_pred hhhCCCceEEEEE-cCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhc-CCccchhhhHhhhhhc
Q psy1544 788 ESQLPDKVEYIIK-CDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLC-NHPFMFQNIEEKFSDH 865 (1331)
Q Consensus 788 ~~~LP~k~e~~v~-~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~-~hp~l~~~~~~~~~~~ 865 (1331)
..-|......+. +.-. ......+ ..+......+...+..+.... ..+..
T Consensus 355 -~~rp~pl~~~~~~~~~~------------~~~~~vd-----~~~~~~~~~~~~~~~~l~~~~~~~~~~----------- 405 (1108)
T 3l9o_A 355 -NFRPTPLQHYLFPAHGD------------GIYLVVD-----EKSTFREENFQKAMASISNQIGDDPNS----------- 405 (1108)
T ss_dssp -CCCSSCEEEEEEETTSS------------CCEEEEE-----TTTEECHHHHHHHHTTC---------------------
T ss_pred -CCCcccceEEEeecCCc------------ceeeeec-----cccchhhhhHHHHHHHHHhhhcccccc-----------
Confidence 001111111111 1000 0000000 000001111111111111000 00000
Q ss_pred cCCCCcccCCccccccc---hhHHHHHhhhhhhcC-CCeeEEEeccHHHHHHHHHHHHhcCCe-----------------
Q psy1544 866 VGGSGIVSGPDLYRVSG---KFELLDRILPKLKST-GHRVLLFCQMTQLMNILEDYFSYRGFK----------------- 924 (1331)
Q Consensus 866 ~~~~~~~~~~~l~~~s~---K~~~L~~lL~~l~~~-g~KVLIFsq~~~~ld~L~~~L~~~g~~----------------- 924 (1331)
....+. .......... ....+..++..+... +.++||||..+..++.+...|...|+.
T Consensus 406 ~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 484 (1108)
T 3l9o_A 406 TDSRGK-KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 484 (1108)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCT
T ss_pred cccccc-cccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 000000 0000000000 133344444444433 469999999999999999988654333
Q ss_pred ----------------------EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCCCCCc
Q psy1544 925 ----------------------YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNP 982 (1331)
Q Consensus 925 ----------------------~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~~wNp 982 (1331)
+..+||+++..+|..+++.|..+ .+. +|++|.++++|||++++++||.++.+|++
T Consensus 485 ~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G--~ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~ 561 (1108)
T 3l9o_A 485 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG--FLK-VLFATETFSIGLNMPAKTVVFTSVRKWDG 561 (1108)
T ss_dssp HHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT--CCC-EEEEESCCCSCCCC--CEEEESCSEEESS
T ss_pred hcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC--CCe-EEEECcHHhcCCCCCCceEEEecCcccCc
Confidence 78999999999999999999854 444 58999999999999999999999988877
Q ss_pred cc--------cccccccccccCCCCceEEEEEeeCCCHH
Q psy1544 983 HQ--------DLQAQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 983 ~~--------~~QaiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
.. |.|++||++|.|.....++|.++..+..+
T Consensus 562 ~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 562 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp SCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred cccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 76 89999999999998888999888877433
No 40
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=221.00 Aligned_cols=115 Identities=26% Similarity=0.520 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....+..+|..|++.|.+++|.+||++|++|..||++..+||||++|++||||+||++||.++.|.|+++|..||+|||.
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
||++||+++|.||.+|..|+++|++.++++...++
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~e 128 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRDD 128 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999876554
No 41
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=4.1e-25 Score=218.99 Aligned_cols=110 Identities=41% Similarity=0.710 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..++..|..|++.|.+++|.+||.++++|..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 93 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNA 93 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
++||++||.||.+|..|+++|.+.++++..
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 94 CTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999864
No 42
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=2.4e-25 Score=221.87 Aligned_cols=116 Identities=57% Similarity=0.895 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCC-CCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDS-DGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~-~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
.++.+...|..|++.|++++|. .||.++++|..||++..+||||++|++||||+||++||.+|.|.|+++|.+||+|||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999985 799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQRVESGEDP 1329 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~~ 1329 (1331)
+||++||++||.||.+|..|++.|++.++++..+++.
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~ 124 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 124 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 9999999999999999999999999999998765543
No 43
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.92 E-value=4e-25 Score=217.76 Aligned_cols=112 Identities=36% Similarity=0.677 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
.+..++..|..|++.|.+++|.+||.++++|..||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
||++||++||.||.+|..|+++|++.++++..
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998864
No 44
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.92 E-value=5.7e-25 Score=215.46 Aligned_cols=110 Identities=29% Similarity=0.516 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQI 1297 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 1297 (1331)
....|..|++.|++++|.+||+++++|..||++..+||||++|++||||+||++||+++.|.++++|..||+|||+||++
T Consensus 6 ~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 85 (116)
T 3iu5_A 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKS 85 (116)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1544 1298 YNEELSLIHEDSVVLESVFTKARQRVESGE 1327 (1331)
Q Consensus 1298 YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~ 1327 (1331)
||++||.||.+|..|+++|++.++++....
T Consensus 86 yN~~~s~~~~~A~~L~~~f~~~~~~l~~~g 115 (116)
T 3iu5_A 86 YYKPDSPEYKAACKLWDLYLRTRNEFVQKG 115 (116)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999987643
No 45
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.91 E-value=7.4e-25 Score=217.92 Aligned_cols=111 Identities=32% Similarity=0.550 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
...++..|+.|++.|.+++|.+|+.++++|..||++..+||||++|++||||+||++||.+|.|.|+++|.+||+|||.|
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 86 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRN 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1295 AQIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1295 a~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|++||++||.||.+|..|+++|++.++++..
T Consensus 87 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 87 AEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987643
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=1.1e-22 Score=267.82 Aligned_cols=381 Identities=16% Similarity=0.090 Sum_probs=224.9
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP 630 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p 630 (1331)
..+.+|++||.+++..+.. +.++|++.+||+|||++++..+..+... .+.+|||+|+..| .||..+|.++++
T Consensus 35 ~~~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 4566899999999987764 7789999999999999876666555432 3569999999654 899999999988
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHHhccC
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~~~~ 706 (1331)
+..+..+.|... .....+|+|+|++.+.... ..+....+++|||||||++.+. ...+...+..+...
T Consensus 108 ~~~v~~l~G~~~---------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 108 DVNIGLITGDVQ---------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp -CCEEEECSSCE---------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCeEEEEeCCCc---------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 888888888753 2345799999999886542 2222236799999999999654 33344555555456
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.+.|+||||+- +..++...+......... .+....
T Consensus 179 v~iIlLSAT~~--n~~ef~~~l~~~~~~~~~-----------vi~~~~-------------------------------- 213 (997)
T 4a4z_A 179 VKFILLSATVP--NTYEFANWIGRTKQKNIY-----------VISTPK-------------------------------- 213 (997)
T ss_dssp CEEEEEECCCT--THHHHHHHHHHHHTCCEE-----------EEECSS--------------------------------
T ss_pred CCEEEEcCCCC--ChHHHHHHHhcccCCceE-----------EEecCC--------------------------------
Confidence 77899999963 223333322211100000 000000
Q ss_pred HhhhCCCceEEEEE--------c-CCCHHHHHHHHHHHhh----hhhcc-------------cCc-----ccccC-CCcc
Q psy1544 787 VESQLPDKVEYIIK--------C-DMSGLQKVLYRHMHTK----GILLT-------------DGS-----EKGKQ-GKGG 834 (1331)
Q Consensus 787 v~~~LP~k~e~~v~--------~-~ls~~q~~lY~~i~~~----~~~~~-------------~~~-----~~~~~-~~~~ 834 (1331)
.|......+. + .........|...... ..... ... ..+.. ..++
T Consensus 214 ----r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~ 289 (997)
T 4a4z_A 214 ----RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGN 289 (997)
T ss_dssp ----CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------------------------------
T ss_pred ----CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 0000000000 0 0000000000000000 00000 000 00000 0000
Q ss_pred hHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHH
Q psy1544 835 AKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNIL 914 (1331)
Q Consensus 835 ~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L 914 (1331)
...-. .-+..+..+ ......+............++..|..++... .+.++||||.....++.+
T Consensus 290 ~~~g~----~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~l 352 (997)
T 4a4z_A 290 STRGG----ANRGGSRGA-----------GAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEY 352 (997)
T ss_dssp ------------------------------------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHH
T ss_pred ccccc----ccccccccc-----------ccccccccccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHH
Confidence 00000 000000000 0000000000000011233455555555432 346999999999999999
Q ss_pred HHHHHhcCC---------------------------------------eEEEEcCCCCHHHHHHHHHHhcCCCCCceEEE
Q psy1544 915 EDYFSYRGF---------------------------------------KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFV 955 (1331)
Q Consensus 915 ~~~L~~~g~---------------------------------------~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~L 955 (1331)
...|...|+ .+..+||+++..+|..+++.|..+. +. +|
T Consensus 353 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~--~k-VL 429 (997)
T 4a4z_A 353 ADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF--IK-VL 429 (997)
T ss_dssp HHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC--CS-EE
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC--Cc-EE
Confidence 999977665 4789999999999999999999544 44 59
Q ss_pred eeccccccccCCCCCCEEEEeCCCC---------CccccccccccccccCCCCceEEEEEeeCCCHHHHHHH
Q psy1544 956 LSTRAGGLGLNLQTADTVIIFDSDW---------NPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILA 1018 (1331)
Q Consensus 956 lST~aggeGLNL~~ad~VI~~D~~w---------Np~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~ 1018 (1331)
++|.++++|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.++..+..+..++.
T Consensus 430 vAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 430 FATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp EECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred EEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 99999999999999 7777766655 99999999999999999988888888876666655544
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=2.4e-23 Score=267.83 Aligned_cols=321 Identities=18% Similarity=0.169 Sum_probs=212.7
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC-CCc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP-SVN 633 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~~ 633 (1331)
+|+++|.+++..+. .+.++|++.+||+|||+++...+...+.. .+.+|||+|.. +..||..+|.++.. +..
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 79999999999854 47889999999999999986555544432 35699999997 55899999976654 577
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHHh---ccC
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNTF---YVA 706 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~---~~~ 706 (1331)
+..+.|....... .....+|+|+|++.+.... ......++++|||||+|.+.+. ...+...+..+ ...
T Consensus 98 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 98 IGISTGDYESRDE-----HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp EEEECSSCBCCSS-----CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCCCCcchh-----hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 7777776432111 1246899999999875431 1111225799999999998653 22222222222 245
Q ss_pred CceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1544 707 PHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 786 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~ 786 (1331)
.+.++||||+- +..+ |.+|+..+.....
T Consensus 173 ~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~~-------------------------------- 200 (702)
T 2p6r_A 173 LRVIGLSATAP--NVTE------------------IAEWLDADYYVSD-------------------------------- 200 (702)
T ss_dssp CEEEEEECCCT--THHH------------------HHHHTTCEEEECC--------------------------------
T ss_pred ceEEEECCCcC--CHHH------------------HHHHhCCCcccCC--------------------------------
Confidence 67899999963 2333 3333332110000
Q ss_pred HhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhcc
Q psy1544 787 VESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHV 866 (1331)
Q Consensus 787 v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 866 (1331)
.-|-.....+...- .........
T Consensus 201 ---~r~~~l~~~~~~~~--------------~~~~~~~~~---------------------------------------- 223 (702)
T 2p6r_A 201 ---WRPVPLVEGVLCEG--------------TLELFDGAF---------------------------------------- 223 (702)
T ss_dssp ---CCSSCEEEEEECSS--------------EEEEEETTE----------------------------------------
T ss_pred ---CCCccceEEEeeCC--------------eeeccCcch----------------------------------------
Confidence 00101111110000 000000000
Q ss_pred CCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc-------------------------
Q psy1544 867 GGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR------------------------- 921 (1331)
Q Consensus 867 ~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~------------------------- 921 (1331)
.....-.+...+.+. ...+.++||||.....+..+...|...
T Consensus 224 ---------~~~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 290 (702)
T 2p6r_A 224 ---------STSRRVKFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRK 290 (702)
T ss_dssp ---------EEEEECCHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHH
T ss_pred ---------hhhhhhhHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHH
Confidence 000000022333333 346789999999999988888877642
Q ss_pred -----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eC---CCCCcccccccc
Q psy1544 922 -----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FD---SDWNPHQDLQAQ 989 (1331)
Q Consensus 922 -----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D---~~wNp~~~~Qai 989 (1331)
+..+..+||+++.++|..+.+.|.++ .+. +|+||++++.|||++++++||. || .++++..+.|++
T Consensus 291 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~ 367 (702)
T 2p6r_A 291 LAECVRKGAAFHHAGLLNGQRRVVEDAFRRG--NIK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMA 367 (702)
T ss_dssp HHHHHHTTCCEECTTSCHHHHHHHHHHHHTT--SCC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHH
T ss_pred HHHHHhcCeEEecCCCCHHHHHHHHHHHHCC--CCe-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHh
Confidence 23567799999999999999999853 444 4899999999999999999998 77 689999999999
Q ss_pred ccccccCCCCceEEEEEeeCCCHH
Q psy1544 990 DRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 990 GRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
|||+|.|+.+...+|.+++....+
T Consensus 368 GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 368 GRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp TTBSCTTTCSCEEEEEECCGGGHH
T ss_pred hhcCCCCCCCCceEEEEecCccHH
Confidence 999999998888999998877643
No 48
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.4e-22 Score=261.34 Aligned_cols=327 Identities=16% Similarity=0.147 Sum_probs=209.9
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC-CCc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP-SVN 633 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~~ 633 (1331)
.|+++|.+++..+ +..+.++|++.+||+|||+++...+...+... .+.+|||+|.. +..+|..+|.++.. +..
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999853 23578899999999999999865555443322 35699999997 55899999966543 577
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccCCce
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVAPHR 709 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~~~r 709 (1331)
+..+.|....... .....+|+|+|++.+.... ....-.++++|||||+|.+.+.. ..+...+..+ +..+.
T Consensus 105 v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~-~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA-----WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRA-KRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG-----GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHH-HTSEE
T ss_pred EEEEeCCCCCchh-----hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhc-ccCcE
Confidence 7777776432111 1236899999998876531 11112257999999999986422 2233333333 46788
Q ss_pred eeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1544 710 LLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 789 (1331)
Q Consensus 710 llLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~ 789 (1331)
++||||+- +..+ |.+|+..+......
T Consensus 179 i~lSATl~--n~~~------------------~~~~l~~~~~~~~~---------------------------------- 204 (715)
T 2va8_A 179 LALSATIS--NYKQ------------------IAKWLGAEPVATNW---------------------------------- 204 (715)
T ss_dssp EEEESCCT--THHH------------------HHHHHTCEEEECCC----------------------------------
T ss_pred EEEcCCCC--CHHH------------------HHHHhCCCccCCCC----------------------------------
Confidence 99999973 1333 33333321100000
Q ss_pred hCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCC
Q psy1544 790 QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGS 869 (1331)
Q Consensus 790 ~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 869 (1331)
-|-.....+...-. . . ......+. ...
T Consensus 205 -r~~~l~~~~~~~~~-------------------------~-~----------------~~~~~~~~----------~~~ 231 (715)
T 2va8_A 205 -RPVPLIEGVIYPER-------------------------K-K----------------KEYNVIFK----------DNT 231 (715)
T ss_dssp -CSSCEEEEEEEECS-------------------------S-T----------------TEEEEEET----------TSC
T ss_pred -CCCCceEEEEecCC-------------------------c-c----------------cceeeecC----------cch
Confidence 01011111100000 0 0 00000000 000
Q ss_pred CcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcC---------------------------
Q psy1544 870 GIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRG--------------------------- 922 (1331)
Q Consensus 870 ~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g--------------------------- 922 (1331)
...+.....+...+.++ ...+.++||||.....+..+...|....
T Consensus 232 ----~~~~~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (715)
T 2va8_A 232 ----TKKVHGDDAIIAYTLDS----LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDE 303 (715)
T ss_dssp ----EEEEESSSHHHHHHHHH----HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHH
T ss_pred ----hhhcccchHHHHHHHHH----HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccc
Confidence 00000012233333333 3467899999999999999988887542
Q ss_pred ---------CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eC-------CCCCc
Q psy1544 923 ---------FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FD-------SDWNP 982 (1331)
Q Consensus 923 ---------~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D-------~~wNp 982 (1331)
..+..+||+++.++|..+.+.|.++ .+.| |+||.+++.|||++++++||. || .+++.
T Consensus 304 ~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g--~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~ 380 (715)
T 2va8_A 304 KELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR--KIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPI 380 (715)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT--CSCE-EEECGGGGGSSCCCBSEEEECCC--------------CH
T ss_pred cHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC--CCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCH
Confidence 2488999999999999999999853 4454 899999999999999999998 99 89999
Q ss_pred cccccccccccccCCCCceEEEEEeeCCC
Q psy1544 983 HQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 983 ~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
..+.|++|||+|.|+.....+|.+++...
T Consensus 381 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 381 MEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999999988888888887654
No 49
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.90 E-value=4.9e-23 Score=265.77 Aligned_cols=320 Identities=18% Similarity=0.164 Sum_probs=214.2
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC-CC
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTI-ALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP-SV 632 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai-~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p-~~ 632 (1331)
.|++||.+++..+ +..+.++|++.+||+|||+++. .++..+... .+.+|||+|.. +..||..+|.++.. ++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 7999999999852 2247889999999999999984 444444433 35699999995 45899999976654 67
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHHhccCCc
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNTFYVAPH 708 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~~~~~~ 708 (1331)
.+..+.|....... .....+|+|+|++.+.... ....-.++++|||||+|++... ...+...+..+....+
T Consensus 97 ~v~~~~G~~~~~~~-----~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 97 RVAMATGDYDSKDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp CEEEECSCSSCCCG-----GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEEecCCCCcccc-----ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 88888885332111 1346899999999875421 1111225799999999999652 2333344444433567
Q ss_pred eeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1544 709 RLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 788 (1331)
Q Consensus 709 rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~ 788 (1331)
.++||||+- +.. .|.+|+........
T Consensus 172 ii~lSATl~--n~~------------------~~~~~l~~~~~~~~---------------------------------- 197 (720)
T 2zj8_A 172 IIGLSATIG--NPE------------------ELAEWLNAELIVSD---------------------------------- 197 (720)
T ss_dssp EEEEECCCS--CHH------------------HHHHHTTEEEEECC----------------------------------
T ss_pred EEEEcCCcC--CHH------------------HHHHHhCCcccCCC----------------------------------
Confidence 899999963 223 33334332110000
Q ss_pred hhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCC
Q psy1544 789 SQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGG 868 (1331)
Q Consensus 789 ~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 868 (1331)
.-|-.....+...- .......
T Consensus 198 -~rp~~l~~~~~~~~--------------~~~~~~~-------------------------------------------- 218 (720)
T 2zj8_A 198 -WRPVKLRRGVFYQG--------------FVTWEDG-------------------------------------------- 218 (720)
T ss_dssp -CCSSEEEEEEEETT--------------EEEETTS--------------------------------------------
T ss_pred -CCCCcceEEEEeCC--------------eeecccc--------------------------------------------
Confidence 00111111110000 0000000
Q ss_pred CCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc------------------C--------
Q psy1544 869 SGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR------------------G-------- 922 (1331)
Q Consensus 869 ~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~------------------g-------- 922 (1331)
. ......+...+.+++ ..++++||||..+..+..+...|... +
T Consensus 219 ~-------~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 287 (720)
T 2zj8_A 219 S-------IDRFSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287 (720)
T ss_dssp C-------EEECSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHH
T ss_pred c-------hhhhhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchH
Confidence 0 000112333343333 45689999999999998888887643 1
Q ss_pred -------CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eC----CCCCcccccc
Q psy1544 923 -------FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FD----SDWNPHQDLQ 987 (1331)
Q Consensus 923 -------~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D----~~wNp~~~~Q 987 (1331)
..+..+||+++.++|..+.+.|.+ +.+.| |+||.+++.|||++++++||. || .++++..+.|
T Consensus 288 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRK--GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred HHHHHHhcCeeeecCCCCHHHHHHHHHHHHC--CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHH
Confidence 248999999999999999999985 34454 899999999999999999998 87 5899999999
Q ss_pred ccccccccCCCCceEEEEEeeCCCHH
Q psy1544 988 AQDRAHRIGQKNEVRVLRLMTVNSVE 1013 (1331)
Q Consensus 988 aiGRa~RiGQ~k~V~V~rli~~~TiE 1013 (1331)
++|||+|.|+.....+|.+++....+
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHH
Confidence 99999999998888899999888754
No 50
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=215.50 Aligned_cols=113 Identities=35% Similarity=0.601 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhhcCC-CCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDS-DGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~-~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
-...|+.|++.|+++.+. +||.++++|+.+|++..+||||++|++||||+||++||++|.|.++++|..||+|||.||+
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999874 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRVESGEDPD 1330 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~~~ 1330 (1331)
+||++||.||.+|..|+++|++.++++....+.+
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 9999999999999999999999999998655543
No 51
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=207.17 Aligned_cols=108 Identities=22% Similarity=0.408 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..++..+..|++.|++|+|++||.+|.+|+++|+++ ||||. ++||+|++|++||++|.|+++++|..||.|||+||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999 89998 99999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVESGE 1327 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~ 1327 (1331)
++||++||+||+||..|+++|.+.++++..+.
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999987643
No 52
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.89 E-value=1.1e-22 Score=270.18 Aligned_cols=278 Identities=15% Similarity=0.202 Sum_probs=191.5
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc-CC
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA-PS 631 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~-p~ 631 (1331)
+.++.|+|.+++..++. +.+.|+..+||+|||+.++..+..++ .....+|||+|+..| .||...|.+++ .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 45899999999998774 67899999999999997766665554 234459999999655 89999999976 35
Q ss_pred CcEEEecCChhH--HHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc-------------chH-
Q psy1544 632 VNVVAYKGSPHL--RKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH-------------HCK- 695 (1331)
Q Consensus 632 ~~v~~~~g~~~~--r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~-------------~sk- 695 (1331)
+.+..++|.... +......+..+.++|+|+|++.+.+....+...++++|||||||++... ...
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 688888886543 2222333445568999999999977654455557899999999986432 112
Q ss_pred HHHHHHHhc-----------cCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHH
Q psy1544 696 LTHILNTFY-----------VAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEET 764 (1331)
Q Consensus 696 ~~~~l~~~~-----------~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~ 764 (1331)
+..++..+. ...+.+++|||+....+...+. -+++ ...+ ....
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l---------------~i~v--~~~~-------- 282 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLL---------------NFTV--GRLV-------- 282 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHT---------------CCCC--CBCC--------
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hcce---------------eEEe--ccCC--------
Confidence 233443332 4567899999976554332110 0000 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHH
Q psy1544 765 ILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQ 844 (1331)
Q Consensus 765 ~~~~~rL~~~L~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 844 (1331)
..+...
T Consensus 283 -------------------------~~~~~i------------------------------------------------- 288 (1104)
T 4ddu_A 283 -------------------------SVARNI------------------------------------------------- 288 (1104)
T ss_dssp -------------------------CCCCCE-------------------------------------------------
T ss_pred -------------------------CCcCCc-------------------------------------------------
Confidence 000000
Q ss_pred HHHhcCCccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCe
Q psy1544 845 LRKLCNHPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFK 924 (1331)
Q Consensus 845 Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~ 924 (1331)
...+....|...|..+|.. .+.++||||+.+..++.|...|...|+.
T Consensus 289 ------------------------------~~~~~~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~ 335 (1104)
T 4ddu_A 289 ------------------------------THVRISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFN 335 (1104)
T ss_dssp ------------------------------EEEEESCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCC
T ss_pred ------------------------------eeEEEecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCC
Confidence 0000111355566666655 3469999999999999999999999999
Q ss_pred EE-EEcCCCCHHHHHHHHHHhcCCCCCceEEEee----ccccccccCCCC-CCEEEEeCCCC
Q psy1544 925 YM-RLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS----TRAGGLGLNLQT-ADTVIIFDSDW 980 (1331)
Q Consensus 925 ~~-~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS----T~aggeGLNL~~-ad~VI~~D~~w 980 (1331)
+. .+|| +|.+ ++.|+++ .+.| ||+ |+++++|||+++ +++||+||+|-
T Consensus 336 ~~~~lhg-----~rr~-l~~F~~G--~~~V-LVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 336 VGETWSE-----FEKN-FEDFKVG--KINI-LIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EEESSSS-----HHHH-HHHHHHT--SCSE-EEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred eeeEecC-----cHHH-HHHHHCC--CCCE-EEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 98 9999 3555 9999854 4445 677 999999999999 99999999998
No 53
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.89 E-value=3.8e-23 Score=201.20 Aligned_cols=106 Identities=26% Similarity=0.375 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....+...|..|++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||+
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPS------AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCC------chhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 357889999999999998654 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
||++||++||.||.+|..|++.|++.++++..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999998753
No 54
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=3.2e-22 Score=261.91 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=109.7
Q ss_pred CccHHHHHHHHHHHHHhcC----------CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNN----------NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLE 624 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~----------~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E 624 (1331)
.|||||..|+.+++..+.. +.+||+.+.||+|||++++.++ .++...+...++|||||.. +..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 6999999999999885432 3678999999999999987766 4444333345799999975 55999999
Q ss_pred HHHHcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---Ccc-cccCccEEEEeCCcccCCcchHHHHHH
Q psy1544 625 FERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPL-AKLHWKYMIIDEGHRMKNHHCKLTHIL 700 (1331)
Q Consensus 625 ~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l-~~~~~~~vIiDEaHrikn~~sk~~~~l 700 (1331)
|..|.+.. +..+.. ...+...+.....+|+|+|++.+.... ..+ ....+.+||||||||+... ...+.+
T Consensus 350 f~~f~~~~---v~~~~s--~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~~I 422 (1038)
T 2w00_A 350 YQRFSPDS---VNGSEN--TAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQKNL 422 (1038)
T ss_dssp HHTTSTTC---SSSSCC--CHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHHHH
T ss_pred HHHhcccc---cccccC--HHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHHHH
Confidence 99998652 122211 112222233456899999999987632 111 1126899999999997642 234455
Q ss_pred HHhccCCceeeeccCCCCC
Q psy1544 701 NTFYVAPHRLLLTGTPLQN 719 (1331)
Q Consensus 701 ~~~~~~~~rllLTgTPlqN 719 (1331)
...+...++|+|||||...
T Consensus 423 ~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCS
T ss_pred HHhCCcccEEEEeCCcccc
Confidence 5555677899999999854
No 55
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.88 E-value=3.3e-23 Score=203.09 Aligned_cols=101 Identities=32% Similarity=0.486 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..+...|..|++.|.++.+ +++|..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||
T Consensus 15 ~~~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 88 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNC 88 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3467889999999998776 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQR 1322 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~ 1322 (1331)
++||++||.||.+|..|+++|++.+.+
T Consensus 89 ~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 89 RKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 56
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.88 E-value=8.5e-23 Score=199.34 Aligned_cols=106 Identities=26% Similarity=0.408 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....+...|..|++.|.++.. +++|..||++..+||||++|++||||+||++||.+|.|.|+++|.+||+|||+
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~------~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~ 78 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDP------SAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCT 78 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSG------GGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcc------cHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999988644 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
||++||++||.||.+|..|++.|.+.+....-
T Consensus 79 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 79 NAMIYNKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp HHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987643
No 57
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.88 E-value=5.6e-23 Score=201.74 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.....|..|++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++++|.+||+|||.||+
T Consensus 13 ~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (117)
T 3g0l_A 13 KDLALCSMILTEMETHED------AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCE 86 (117)
T ss_dssp THHHHHHHHHHHHHTSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC------chhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 355789999999998765 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
+||++||.||.+|..|+++|++.++++..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 87 TFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998764
No 58
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=199.82 Aligned_cols=103 Identities=20% Similarity=0.337 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
.++...|..|++.|.++.. +++|..||++..+||||++|++||||+||++||.++.|.++++|.+||+|||+||
T Consensus 6 ~pl~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDT------GNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNC 79 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCS------SCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCc------cHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999765 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
++||++||.+|.+|..|++.|...++++.
T Consensus 80 ~~yN~~~s~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 80 LKYNAKDTIFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887653
No 59
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.88 E-value=6.3e-23 Score=206.55 Aligned_cols=106 Identities=32% Similarity=0.479 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....+.+.|..|++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++++|.+||.|||.
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCED------SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFS 91 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999776 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCC-CCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1294 NAQIYNEE-LSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1294 Na~~YN~~-~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
||++||++ ||.||.+|..|+++|++.++++.+
T Consensus 92 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 92 NSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 999999999999999999987653
No 60
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.88 E-value=8.3e-23 Score=202.78 Aligned_cols=107 Identities=29% Similarity=0.464 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCc--CCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSR--KELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~--~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
...++..|+.|++.|.++. .+++|..||+. ..+||||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 19 ~~~l~~~~~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQ------FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp CHHHHHHHHTHHHHHHTST------TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc------cchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3578888999999998754 49999999996 489999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQRVESGE 1327 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~ 1327 (1331)
+||++||++||.||.+|..|++.|++.++++..++
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~~e 127 (127)
T 2oss_A 93 TNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE 127 (127)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999887653
No 61
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.88 E-value=8.3e-23 Score=209.34 Aligned_cols=108 Identities=29% Similarity=0.408 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
...++.+|+.|++.|.++.. +++|..||+.. .+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 30 t~~l~~~~~~il~~l~~~~~------a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQF------AWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMF 103 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTT------CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcC------chhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 36788889999999988654 99999999987 79999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
.||++||+++|.||.+|..|+++|++.++++..++.
T Consensus 104 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 139 (154)
T 4alg_A 104 TNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139 (154)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 999999999999999999999999999999976553
No 62
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=199.97 Aligned_cols=106 Identities=29% Similarity=0.502 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....|++.|..|++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCED------SEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFS 80 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCC------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999776 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCC-CCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1294 NAQIYNEE-LSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1294 Na~~YN~~-~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
||++||++ ||.||.+|..|+++|++.++++.+
T Consensus 81 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 113 (123)
T 3q2e_A 81 NAKAYTPNKRSKIYSMTLRLSALFEEKMKKISS 113 (123)
T ss_dssp HHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 999999999999999999998764
No 63
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.87 E-value=2.2e-22 Score=198.16 Aligned_cols=101 Identities=23% Similarity=0.469 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy1544 1219 KKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIY 1298 (1331)
Q Consensus 1219 ~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~Y 1298 (1331)
...|..|++.|.++. .+++|..||++..+||||++|++||||+||++||++|.|.|+++|.+||+|||+||++|
T Consensus 15 ~~~~~~il~~l~~~~------~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 15 DAAIQNILTELQNHA------AAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp HHHHHHHHHHHHHST------TCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC------CchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 467889999998754 49999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1299 NEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1299 N~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|++||.||.+|..|++.|++.++++..
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999998753
No 64
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.87 E-value=1e-21 Score=261.09 Aligned_cols=320 Identities=15% Similarity=0.188 Sum_probs=208.4
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC-
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS- 631 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~- 631 (1331)
+..+ ++|.+++..++. +.++|+..+||+|||+.++.++..+.. ....+|||+|+..| .|+...|.+++..
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3448 999999998874 788999999999999866666555543 23569999999666 8999999988764
Q ss_pred -C----cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHh---
Q psy1544 632 -V----NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTF--- 703 (1331)
Q Consensus 632 -~----~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~--- 703 (1331)
+ .+..++|.................+|+|+|++.+......|. .+++|||||||++.+....+...+..+
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~ 204 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGFH 204 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEE
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCcc
Confidence 4 677777765443321111111228999999999998766554 689999999999987554444444433
Q ss_pred --------ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHH
Q psy1544 704 --------YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVL 775 (1331)
Q Consensus 704 --------~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L 775 (1331)
......+++|||.-.. .++.. .| +
T Consensus 205 ~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~--------------------------------~ 236 (1054)
T 1gku_B 205 YDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------EL--------------------------------F 236 (1054)
T ss_dssp EETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HH--------------------------------H
T ss_pred hhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HH--------------------------------h
Confidence 1234568899886433 11000 00 0
Q ss_pred HHHHHHHHHHHHhhhCCCceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccch
Q psy1544 776 RPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMF 855 (1331)
Q Consensus 776 ~p~~lRR~k~~v~~~LP~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~ 855 (1331)
..+ +.-.+... . ... .. + .
T Consensus 237 ~~~--------~~i~v~~~-------------------------------~--~~~-~~-------------i-~----- 255 (1054)
T 1gku_B 237 RQL--------LNFDIGSS-------------------------------R--ITV-RN-------------V-E----- 255 (1054)
T ss_dssp HHH--------HCCCCSCC-------------------------------E--ECC-CC-------------E-E-----
T ss_pred hcc--------eEEEccCc-------------------------------c--cCc-CC-------------c-e-----
Confidence 000 00000000 0 000 00 0 0
Q ss_pred hhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHH
Q psy1544 856 QNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAE 935 (1331)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~ 935 (1331)
..+....|...|..++... +.++||||.....++.|...|... +++..+||++.
T Consensus 256 --------------------~~~~~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-- 309 (1054)
T 1gku_B 256 --------------------DVAVNDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-- 309 (1054)
T ss_dssp --------------------EEEESCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS--
T ss_pred --------------------EEEechhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH--
Confidence 0000133455556666543 568999999999999999999988 99999999984
Q ss_pred HHHHHHHHhcCCCCCceEEEee----ccccccccCCCCC-CEEEEeCCC-------------------------------
Q psy1544 936 DRGDLLKKFNAPDSEYFIFVLS----TRAGGLGLNLQTA-DTVIIFDSD------------------------------- 979 (1331)
Q Consensus 936 eR~~~i~~Fn~~~~~~~v~LlS----T~aggeGLNL~~a-d~VI~~D~~------------------------------- 979 (1331)
.+++.|+.+ .+.| ||+ |+++++|||++++ ++||+||.+
T Consensus 310 ---~~l~~F~~G--~~~V-LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1054)
T 1gku_B 310 ---GDYEKFVEG--EIDH-LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIE 383 (1054)
T ss_dssp ---HHHHHHHHT--SCSE-EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHH
T ss_pred ---HHHHHHHcC--CCcE-EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHH
Confidence 788999854 4455 666 9999999999996 999999999
Q ss_pred ----------------------------------------CCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHH
Q psy1544 980 ----------------------------------------WNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAA 1019 (1331)
Q Consensus 980 ----------------------------------------wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~ 1019 (1331)
.+...|+||+||++|.|.......+.++..+ |..++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~~~ 461 (1054)
T 1gku_B 384 RLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELLSA 461 (1054)
T ss_dssp TTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHHHH
Confidence 7899999999999998876432233334444 4555555
Q ss_pred HHHHHHH
Q psy1544 1020 ARYKLNM 1026 (1331)
Q Consensus 1020 ~~~K~~l 1026 (1331)
..+++..
T Consensus 462 l~~~l~~ 468 (1054)
T 1gku_B 462 FIERAKL 468 (1054)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 5555544
No 65
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.87 E-value=3.1e-22 Score=200.84 Aligned_cols=106 Identities=23% Similarity=0.416 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhC--CCCCCHHHHHHHHHHHH
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIED--GKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~--~~Y~s~~~f~~D~~lm~ 1292 (1331)
.+...+.|..|+..|+++. .+++|..||+. .+||||++|++||||+||++||.+ +.|.++++|.+||+|||
T Consensus 18 ~p~~~~~c~~il~~L~~~~------~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHE------MSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSG------GGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCc------cchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 3445688999999998754 59999999987 799999999999999999999998 58999999999999999
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy1544 1293 RNAQIYNEELSLIHEDSVVLESVFTKARQRVESGE 1327 (1331)
Q Consensus 1293 ~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~ 1327 (1331)
.||++||++||.||.+|..|+++|++.++++.++.
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 91 QNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999987654
No 66
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.87 E-value=2.6e-22 Score=200.11 Aligned_cols=105 Identities=22% Similarity=0.337 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..+.|..|++.|+.+.+ ..++++|+.||+.. .+||||++|++||||+||++||.+|.|.|+++|.+||+|||.||
T Consensus 23 ~l~~c~~il~~L~~~~~---~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na 99 (130)
T 2ouo_A 23 QLKCCSGILKEMFAKKH---AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNC 99 (130)
T ss_dssp HHHHHHHHHHHHTSGGG---HHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---chhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34678899999987653 34689999999886 49999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
++||++||.||.+|..|+++|++.++++..
T Consensus 100 ~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 100 YKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999998864
No 67
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.87 E-value=1.6e-22 Score=199.40 Aligned_cols=108 Identities=21% Similarity=0.337 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCC--CCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKE--LPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~--~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..+.|..|+..|..+.. +.++++|..||+... +||||++|++||||+||++||.+|.|.|+++|.+||+|||.||
T Consensus 10 ~l~~c~~il~~l~~~~~---~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 10 QLKCCSGILKEMFAKKH---AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp HHHHHHHHHHHHTSGGG---HHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC---ccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 45778888888876543 466999999999988 9999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
++||++||.||.+|..|++.|++.++++..+++
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~~ 119 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPE 119 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTCCC---
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 999999999999999999999999999986543
No 68
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.86 E-value=7.5e-22 Score=194.34 Aligned_cols=107 Identities=22% Similarity=0.391 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHH
Q psy1544 1213 KDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKT 1290 (1331)
Q Consensus 1213 ~~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~l 1290 (1331)
.....+.+.|..+++.|... ++.+++|..||+.. .+||||++|++||||+||++||++|.|.|+++|.+||+|
T Consensus 7 ~~~~el~~~l~~~l~~l~~~-----~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~l 81 (119)
T 3p1f_A 7 FKPEELRQALMPTLEALYRQ-----DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWL 81 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHTC-----TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-----CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35678889999999998773 24599999999988 799999999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1291 LCRNAQIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1291 m~~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
||+||++||++||.||.+|..|+++|++.++++.
T Consensus 82 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 82 MFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998775
No 69
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=194.98 Aligned_cols=101 Identities=23% Similarity=0.339 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
..++..|..|++.|.++.. +++|..||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.||
T Consensus 12 ~p~~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 85 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDP------HGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNA 85 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCT------TCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCc------cHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence 3578899999999998655 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHH
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQR 1322 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~ 1322 (1331)
++||++||.||.+|..|++.|.+.+.+
T Consensus 86 ~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 86 MTYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 70
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=197.56 Aligned_cols=102 Identities=24% Similarity=0.373 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~ 1296 (1331)
.+...|..|++.|.++.+ +++|..||++..+||||++|++||||+||++||.+|.|.++++|.+||+|||.||+
T Consensus 13 ~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDP------ARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCM 86 (135)
T ss_dssp HHHHHHHHHHHHHHHTCT------TCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc------chhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999765 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
+||++||.||.+|..|++.|.+.+++..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (135)
T 3rcw_A 87 KYNARDTVFYRAAVRLRDQGGVVLRQAR 114 (135)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887653
No 71
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.85 E-value=1.3e-21 Score=203.00 Aligned_cols=107 Identities=24% Similarity=0.403 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcC--CCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHH
Q psy1544 1212 EKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK--ELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFK 1289 (1331)
Q Consensus 1212 ~~~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~--~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~ 1289 (1331)
......+...|..|++.|+++.+ +++|..||+.. .+||||++|++||||+||++||.++.|.++++|..||+
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~------s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~ 89 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEG------GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQ 89 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTT------GGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34567889999999999998655 99999998854 79999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1290 TLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1290 lm~~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
|||.||++||++||.||.+|..|+++|.+.+.++.
T Consensus 90 Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 90 LIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999998763
No 72
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.84 E-value=5.3e-21 Score=196.44 Aligned_cols=104 Identities=24% Similarity=0.308 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhc
Q psy1544 1220 KTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYN 1299 (1331)
Q Consensus 1220 ~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN 1299 (1331)
..|..|+..|...+- .+++.+++|..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||
T Consensus 28 ~~l~~iL~~i~~~kl-~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 28 VAFSFILDNIVTQKM-MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHHTT-TTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 445555555544221 1345699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1300 EELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1300 ~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
+++|.||.+|..|+++|...++++.
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 73
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.82 E-value=2.4e-20 Score=186.11 Aligned_cols=101 Identities=24% Similarity=0.380 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
...++..|..+++.|..+.. +++|..||++..+||||++|++||||+||++||.+|.|.++++|..||+|||.|
T Consensus 8 l~~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 81 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKR------FRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSN 81 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCc------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 45677788888888877554 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHH----HHHHHHHHHHHHHHHH
Q psy1544 1295 AQIYNEELSLI----HEDSVVLESVFTKARQ 1321 (1331)
Q Consensus 1295 a~~YN~~~S~i----~~~A~~L~~~f~~~~~ 1321 (1331)
|++||++||.+ +.+|..|++.+...++
T Consensus 82 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 82 ALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999866 7899999999988885
No 74
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.82 E-value=1.7e-20 Score=197.87 Aligned_cols=103 Identities=27% Similarity=0.458 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q psy1544 1216 AKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1216 ~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na 1295 (1331)
......|..|++.|.++. .+++|+.||+...+||||++|++||||+||++||++|.|.|+++|.+||+|||.||
T Consensus 71 ~~~~~~l~~il~~l~~~~------~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 144 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHK------MAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNC 144 (174)
T ss_dssp HHHHHHHHHHHHHHHTSG------GGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh------hhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 345577888999998754 59999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
++||++||.||.+|..|+++|++.++++.
T Consensus 145 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 145 RYYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988764
No 75
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.82 E-value=3.5e-20 Score=197.02 Aligned_cols=105 Identities=23% Similarity=0.388 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhC--CCCCCHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIED--GKYSSVDELQKDFKTL 1291 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~--~~Y~s~~~f~~D~~lm 1291 (1331)
..+..+..|..|+..|..+.. +++|..||+. .+||||++|++||||+||++||++ +.|.++++|.+||+||
T Consensus 78 l~~~~~~~c~~il~~l~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li 150 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEM------SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLI 150 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTT------CHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchh------hhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 346678899999999999765 9999999986 489999999999999999999998 7899999999999999
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy1544 1292 CRNAQIYNEELSLIHEDSVVLESVFTKARQRVES 1325 (1331)
Q Consensus 1292 ~~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~ 1325 (1331)
|.||++||+++|.||.+|..|+++|++.++++.+
T Consensus 151 ~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 151 FQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999998753
No 76
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.81 E-value=5.3e-19 Score=221.55 Aligned_cols=117 Identities=15% Similarity=0.204 Sum_probs=101.9
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+..|...+..+...|.+|||||.++..++.|...|...|+++..++|.+...+|..+...|+. +. ++|+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 4578999999888777778899999999999999999999999999999999887777655555542 22 599999
Q ss_pred ccccccCCC--------CCCEEEEeCCCCCccccccccccccccCCCCce
Q psy1544 960 AGGLGLNLQ--------TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 960 aggeGLNL~--------~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
++|+|+|+. +..+||+||.+-++..|.|++||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 788999999999999999999999999976543
No 77
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=179.76 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy1544 1213 KDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLC 1292 (1331)
Q Consensus 1213 ~~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~ 1292 (1331)
.....++..|..|++.|..+.. +++|..| +||||++|++||||+||++||.++.|.|+++|.+||+|||
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~------~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~ 76 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKR------FNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLIC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGG------GCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcc------chhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3456788999999999998654 9999997 9999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCCH----HHHHHHHHHHHHHHHHHH
Q psy1544 1293 RNAQIYNEELSL----IHEDSVVLESVFTKARQR 1322 (1331)
Q Consensus 1293 ~Na~~YN~~~S~----i~~~A~~L~~~f~~~~~~ 1322 (1331)
+||++||++||+ ||.+|..|++.|...++.
T Consensus 77 ~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 77 SNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp HHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999995 679999999999988753
No 78
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.80 E-value=1.7e-19 Score=218.16 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=83.4
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCE-----
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADT----- 972 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~----- 972 (1331)
+.++||||..+..++.+...|...|+++..+||. +|..+++.|+++. +. +|+||+++++|||++ +++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~-vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WD-FVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CS-EEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--Ce-EEEECchHHcCcccC-CcEEEecC
Confidence 5589999999999999999999999999999997 6888999998543 33 589999999999999 555
Q ss_pred ------------EEEeCCCCCccccccccccccccCCCCc
Q psy1544 973 ------------VIIFDSDWNPHQDLQAQDRAHRIGQKNE 1000 (1331)
Q Consensus 973 ------------VI~~D~~wNp~~~~QaiGRa~RiGQ~k~ 1000 (1331)
||+++.+.+...+.|++||++|.|...-
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5778899999999999999999996543
No 79
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.80 E-value=1.2e-19 Score=220.98 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=83.6
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeC
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFD 977 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D 977 (1331)
+.++||||+....++.+...|...|+.+..+||.+. ..+++.|+++. +. +|+||+++++|||+++ ++||+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~--~~-vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTD--WD-FVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSC--CS-EEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCC--ce-EEEECCHHHhCcCCCC-CEEEECC
Confidence 558999999999999999999999999999999754 57899998543 34 5899999999999999 9999998
Q ss_pred --------------------CCCCccccccccccccccCCC
Q psy1544 978 --------------------SDWNPHQDLQAQDRAHRIGQK 998 (1331)
Q Consensus 978 --------------------~~wNp~~~~QaiGRa~RiGQ~ 998 (1331)
.+.+...|.|++||++|.|..
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 889999999999999999973
No 80
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.78 E-value=2.9e-19 Score=200.64 Aligned_cols=104 Identities=21% Similarity=0.387 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
...+...|..|++.|..+.+ +++|..||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPN------TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTT------CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC------chhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 45789999999999998765 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy1544 1295 AQIYNEELSLIHEDSVVLESVFTKARQRVE 1324 (1331)
Q Consensus 1295 a~~YN~~~S~i~~~A~~L~~~f~~~~~~~~ 1324 (1331)
|++||++||.||.+|..|+++|.+.++++.
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987653
No 81
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.78 E-value=3e-19 Score=216.57 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=76.8
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE-
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII- 975 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~- 975 (1331)
.+.++||||.....++.+...|...|+++..+|| ++|..+++.|+++. +. +||||+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~--~~-vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKK--PD-FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CC--CS-EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCC--ce-EEEECChhheeeccC-ceEEEeC
Confidence 3679999999999999999999999999999999 47889999998644 33 589999999999999 999985
Q ss_pred ------------------eCCCCCccccccccccccccCC
Q psy1544 976 ------------------FDSDWNPHQDLQAQDRAHRIGQ 997 (1331)
Q Consensus 976 ------------------~D~~wNp~~~~QaiGRa~RiGQ 997 (1331)
||.+.++..|.|++||++|.|.
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 82
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.78 E-value=1.6e-19 Score=228.19 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=85.0
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE-
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII- 975 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~- 975 (1331)
.+.++||||.....++.+...|...|+++..+|| ++|..+++.|+++. +. +||||+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~--~~-VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGD--WD-FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCC--CS-EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCC--ce-EEEECchhhcceeeC-CcEEEEC
Confidence 4679999999999999999999999999999999 38999999998544 34 589999999999999 999997
Q ss_pred -------------------eCCCCCcccccccccccccc-CCCCce
Q psy1544 976 -------------------FDSDWNPHQDLQAQDRAHRI-GQKNEV 1001 (1331)
Q Consensus 976 -------------------~D~~wNp~~~~QaiGRa~Ri-GQ~k~V 1001 (1331)
||.+.++..|.|++||++|. |+.-.+
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 56788889999999999999 444333
No 83
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.78 E-value=3.9e-19 Score=216.82 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE--
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII-- 975 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~-- 975 (1331)
+.++||||.....++.|...|...|+.+..++|. +|..+++.|+++. +. +||||+++++|||+++ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~--~~-iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGD--WD-FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCC--CS-EEEESSCC---CCCSC-SEEEECC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCC--ce-EEEECChHHhCeecCC-CEEEECC
Confidence 5689999999999999999999999999999994 7888999998543 34 5899999999999999 99998
Q ss_pred ------------------eCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 976 ------------------FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 976 ------------------~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
||.+.++..|.||+||++|.|.. .-..|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 78999999999999999999962 22444556654
No 84
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.77 E-value=1.2e-17 Score=208.61 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=101.4
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
...|+.+|...+..+...|..|||||.++...+.|...|...|+++..++|.....++.-+...|+. +. ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 3569999999888877888899999999999999999999999999999999876666555566763 22 599999
Q ss_pred ccccccCCCCC----------------------------------------------------CEEEEeCCCCCcccccc
Q psy1544 960 AGGLGLNLQTA----------------------------------------------------DTVIIFDSDWNPHQDLQ 987 (1331)
Q Consensus 960 aggeGLNL~~a----------------------------------------------------d~VI~~D~~wNp~~~~Q 987 (1331)
.+|+|+|+... .+||+||.+-|+..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999964 49999999999999999
Q ss_pred ccccccccCCCCce
Q psy1544 988 AQDRAHRIGQKNEV 1001 (1331)
Q Consensus 988 aiGRa~RiGQ~k~V 1001 (1331)
++||++|.|..-..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999976543
No 85
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.77 E-value=2.7e-18 Score=214.47 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=103.6
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
....|+.+|...+..+...|..|||||.++...+.|...|...|+++..++|.....+|..+...|+. +. ++|+|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEec
Confidence 34679999999998877888899999999999999999999999999999999887777666677874 22 69999
Q ss_pred cccccccCCCCC-------------------------------------CEEEEeCCCCCccccccccccccccCCCCce
Q psy1544 959 RAGGLGLNLQTA-------------------------------------DTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 959 ~aggeGLNL~~a-------------------------------------d~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
+.+|+|+|+... .+||+||.+-|+..|.|++||++|.|..-..
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 5999999999999999999999999976543
No 86
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.77 E-value=1e-18 Score=219.53 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=87.3
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEE---
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTV--- 973 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~V--- 973 (1331)
.+.++||||.....++.+...|...|+++..+||. +|..+++.|+++. +. +||||+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~--~~-VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTD--WD-FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSC--CS-EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCC--cE-EEEECcHHHcCcccC-ceEEEEC
Confidence 35689999999999999999999999999999984 7889999998543 33 589999999999996 8988
Q ss_pred -----------------EEeCCCCCccccccccccccccCCCCceEEEEEee
Q psy1544 974 -----------------IIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMT 1008 (1331)
Q Consensus 974 -----------------I~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~ 1008 (1331)
|+||.+-++..|+||+||++|.|...- ..|.|++
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 677778888899999999999986433 3455565
No 87
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.77 E-value=2.8e-18 Score=216.20 Aligned_cols=108 Identities=24% Similarity=0.330 Sum_probs=95.5
Q ss_pred eeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEEeCC-
Q psy1544 900 RVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDS- 978 (1331)
Q Consensus 900 KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~~D~- 978 (1331)
..||||.....++.+...|...|+.+..+||+++.++|..+++.|+++++.+.| |+||++++.|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCcc
Confidence 357889999999999999999999999999999999999999999974455555 8999999999999 9999999999
Q ss_pred -------------CCCccccccccccccccCCC-CceEEEEEeeC
Q psy1544 979 -------------DWNPHQDLQAQDRAHRIGQK-NEVRVLRLMTV 1009 (1331)
Q Consensus 979 -------------~wNp~~~~QaiGRa~RiGQ~-k~V~V~rli~~ 1009 (1331)
+++...+.|++||++|.|.. ....+|.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 34667766544
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.77 E-value=1.1e-18 Score=188.86 Aligned_cols=107 Identities=18% Similarity=0.360 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhC---CCCCCHHHHHHHHHHH
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIED---GKYSSVDELQKDFKTL 1291 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~---~~Y~s~~~f~~D~~lm 1291 (1331)
.+..+..|..|+..|.++. .+++|+.||+. .+||||++|++||||+||++||++ +.|.|+++|.+||+||
T Consensus 79 s~~~~~~c~~il~~l~~~~------~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li 151 (207)
T 3u5n_A 79 SPVDQRKCERLLLYLYCHE------LSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLI 151 (207)
T ss_dssp CHHHHHHHHHHHHHHHTST------TCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc------chhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHH
Confidence 4556788999999999865 49999999987 799999999999999999999997 7999999999999999
Q ss_pred HHhhhhhcC-----------------CCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1292 CRNAQIYNE-----------------ELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1292 ~~Na~~YN~-----------------~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
|.||++||+ ++|.|+.+|..|+.+|++.++++.++..
T Consensus 152 ~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~ 205 (207)
T 3u5n_A 152 FKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRT 205 (207)
T ss_dssp HHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999 9999999999999999999999987653
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.76 E-value=1.2e-18 Score=198.81 Aligned_cols=164 Identities=17% Similarity=0.211 Sum_probs=122.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p--~ 631 (1331)
.+|++||.+++.+++. +.++||+++||+|||++++.++..++..+ .+++|||||+ .++.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999886 46789999999999999988887766543 3479999999 566999999999964 3
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
..+..+.|...... ......+|+|+||+.+.+....+ ...|++|||||||++.+. .+...+..+....++|+
T Consensus 186 ~~~~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEE
T ss_pred ceEEEEeCCCcchh-----hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEE
Confidence 45555544432111 12256899999999997764432 236899999999999864 34445554446788999
Q ss_pred eccCCCCCChHHHHHHHhhhcC
Q psy1544 712 LTGTPLQNKLPELWALLNFLLP 733 (1331)
Q Consensus 712 LTgTPlqN~l~EL~~ll~fL~p 733 (1331)
|||||. |...+++.++.++.|
T Consensus 258 lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 258 LSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp ECSSCC-TTSTTHHHHHHHHCE
T ss_pred EeCCCC-CcchHHHHHHHhcCC
Confidence 999995 445778888777654
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=186.69 Aligned_cols=101 Identities=13% Similarity=0.216 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCccccccc--CCCCHhHHHHHHhCC---CCCCHHHHHHHHHHH
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVID--RPMDIKKILGRIEDG---KYSSVDELQKDFKTL 1291 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk--~Pmdl~~Ik~kl~~~---~Y~s~~~f~~D~~lm 1291 (1331)
..+..|..|++.|..+. .+++|++||+ |+||++|+ +||||+||++||.++ .|.++++|.+||+||
T Consensus 76 ~~~~~c~~iL~~l~~~~------~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 76 ANQRKCERVLLALFCHE------PCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp HHHHHHHHHHHHHHHST------THHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCc------cchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 34568999999999865 4999999998 88999998 899999999999999 999999999999999
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1292 CRNAQIYNEELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1292 ~~Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
|+||++|| ++|.||.+|..|+++|++.++++.++..
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999 5899999999999999999999987653
No 91
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.76 E-value=5.8e-19 Score=200.44 Aligned_cols=103 Identities=20% Similarity=0.380 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q psy1544 1215 QAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRN 1294 (1331)
Q Consensus 1215 ~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~N 1294 (1331)
...+...|..|++.|.++.. +++|+.||++..+||||++|++||||+||++||.++.|.++.+|.+||.|||.|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~------a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~N 118 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPN------TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 118 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTT------CGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCc------chhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHH
Confidence 45677889999999987644 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1295 AQIYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1295 a~~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
|++||++||.||.+|..|+++|.+.++++
T Consensus 119 a~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 119 SATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998776543
No 92
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.76 E-value=3.8e-18 Score=212.51 Aligned_cols=275 Identities=18% Similarity=0.176 Sum_probs=176.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCcEE
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVNVV 635 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~ 635 (1331)
++++|...+. .+.++.++|+..+||+|||.++...+. .. ...+||++|+..+ .|+...+.+.+. ..+.
T Consensus 218 ~~~~q~~i~~----~L~~~~~vlv~ApTGSGKT~a~~l~ll---~~---g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg 286 (666)
T 3o8b_A 218 VFTDNSSPPA----VPQSFQVAHLHAPTGSGKSTKVPAAYA---AQ---GYKVLVLNPSVAATLGFGAYMSKAHG-IDPN 286 (666)
T ss_dssp SCCCCCSCCC----CCSSCEEEEEECCTTSCTTTHHHHHHH---HT---TCCEEEEESCHHHHHHHHHHHHHHHS-CCCE
T ss_pred cHHHHHHHHH----HHHcCCeEEEEeCCchhHHHHHHHHHH---HC---CCeEEEEcchHHHHHHHHHHHHHHhC-CCee
Confidence 4455544443 233567789999999999977654433 22 2359999999877 788887776653 3344
Q ss_pred EecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcch-HHHHHHHHhccCCc--eeee
Q psy1544 636 AYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHC-KLTHILNTFYVAPH--RLLL 712 (1331)
Q Consensus 636 ~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~s-k~~~~l~~~~~~~~--rllL 712 (1331)
...|... .....+|+++|++.+..+. .+...++++|||||||.+..... .+...+..+..... .+++
T Consensus 287 ~~vG~~~---------~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 287 IRTGVRT---------ITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp EECSSCE---------ECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EEECcEe---------ccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 4444421 2456899999999997543 34444789999999987643222 23333433322233 5777
Q ss_pred ccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy1544 713 TGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 792 (1331)
Q Consensus 713 TgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~~lRR~k~~v~~~LP 792 (1331)
|||+-.. +. . ..|
T Consensus 357 SAT~~~~----------------i~----------~-----------------------------------------~~p 369 (666)
T 3o8b_A 357 TATPPGS----------------VT----------V-----------------------------------------PHP 369 (666)
T ss_dssp ESSCTTC----------------CC----------C-----------------------------------------CCT
T ss_pred CCCCCcc----------------cc----------c-----------------------------------------CCc
Confidence 9997431 00 0 000
Q ss_pred CceEEEEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhhhHhhhhhccCCCCcc
Q psy1544 793 DKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQNIEEKFSDHVGGSGIV 872 (1331)
Q Consensus 793 ~k~e~~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~ 872 (1331)
. ...+.+... .. ..+
T Consensus 370 ~--i~~v~~~~~--------------------------~~------------------i~~------------------- 384 (666)
T 3o8b_A 370 N--IEEVALSNT--------------------------GE------------------IPF------------------- 384 (666)
T ss_dssp T--EEEEECBSC--------------------------SS------------------EEE-------------------
T ss_pred c--eEEEeeccc--------------------------ch------------------hHH-------------------
Confidence 0 000000000 00 000
Q ss_pred cCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q psy1544 873 SGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYF 952 (1331)
Q Consensus 873 ~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~ 952 (1331)
...... +. ...+.++||||+.+..++.+...|...|+.+..+||++++++ |.. ++.
T Consensus 385 -----~~~~~~-------l~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~- 440 (666)
T 3o8b_A 385 -----YGKAIP-------IE--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGD- 440 (666)
T ss_dssp -----TTEEEC-------GG--GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSC-
T ss_pred -----HHhhhh-------hh--hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCC-
Confidence 000000 00 114679999999999999999999999999999999999875 432 223
Q ss_pred EEEeeccccccccCCCCCCEEE----------EeC-----------CCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 953 IFVLSTRAGGLGLNLQTADTVI----------IFD-----------SDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 953 v~LlST~aggeGLNL~~ad~VI----------~~D-----------~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
-+||+|+++++|||+. +++|| +|| .+.+...|+||+||++| |..- . |.|++.+.
T Consensus 441 ~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e 515 (666)
T 3o8b_A 441 VVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGE 515 (666)
T ss_dssp EEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCC
T ss_pred cEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecch
Confidence 4699999999999996 99998 566 77888999999999999 6543 3 77887764
Q ss_pred HH
Q psy1544 1012 VE 1013 (1331)
Q Consensus 1012 iE 1013 (1331)
.+
T Consensus 516 ~~ 517 (666)
T 3o8b_A 516 RP 517 (666)
T ss_dssp BC
T ss_pred hh
Confidence 43
No 93
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.76 E-value=1.6e-18 Score=194.67 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=83.6
Q ss_pred CccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q psy1544 1238 RVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFT 1317 (1331)
Q Consensus 1238 r~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~ 1317 (1331)
+..+++|+.||++..+||||++|++||||+||++||.+|.|.|+++|..||+|||+||++||++||.||.+|..|+++|.
T Consensus 152 ~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~ 231 (265)
T 3uv5_A 152 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231 (265)
T ss_dssp STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy1544 1318 KARQRVE 1324 (1331)
Q Consensus 1318 ~~~~~~~ 1324 (1331)
..++++.
T Consensus 232 ~~~~~~~ 238 (265)
T 3uv5_A 232 QTLTEYD 238 (265)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 9998764
No 94
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.75 E-value=7.3e-19 Score=200.51 Aligned_cols=87 Identities=34% Similarity=0.623 Sum_probs=85.0
Q ss_pred CCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q psy1544 1236 DGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESV 1315 (1331)
Q Consensus 1236 ~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~ 1315 (1331)
++|.++++|+.||++..+||||++|++||||+||++||.+|.|.++++|.+||+|||+||++||++||.||.+|..|+++
T Consensus 176 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 176 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp CSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred cCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1544 1316 FTKARQR 1322 (1331)
Q Consensus 1316 f~~~~~~ 1322 (1331)
|++.+++
T Consensus 256 f~~~~~~ 262 (311)
T 2r0y_A 256 FNYLIQK 262 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
No 95
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.75 E-value=1.2e-16 Score=219.44 Aligned_cols=323 Identities=16% Similarity=0.166 Sum_probs=191.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHH-HcC--
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFER-WAP-- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k-~~p-- 630 (1331)
..+.|.|.+++..++ +.+.+.+++.+||+|||+++...|...+.... ++.+|+|+|...| .|-..+|.+ +..
T Consensus 925 ~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp SBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 358899999998554 57788999999999999997655554444332 3459999999655 555566654 332
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCccc----ccCccEEEEeCCcccCCcchHHH-HHHHHh--
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLA----KLHWKYMIIDEGHRMKNHHCKLT-HILNTF-- 703 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~----~~~~~~vIiDEaHrikn~~sk~~-~~l~~~-- 703 (1331)
+.++..+.|....... ...+.+|+|+|++.+........ -.+..+|||||+|.+........ ..+..+
T Consensus 1001 g~~V~~ltGd~~~~~~-----~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLK-----LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCCEEECCSCHHHHHH-----HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcchh-----hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 5678888887543322 12357999999998643221111 12568999999999976432222 122111
Q ss_pred -----ccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHHHHHHHHH
Q psy1544 704 -----YVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 778 (1331)
Q Consensus 704 -----~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL~~~L~p~ 778 (1331)
....+.++||||- .|.. .|.+|+........ .+..
T Consensus 1076 i~~~~~~~~riI~lSATl--~N~~------------------dla~WL~~~~~~~~---~~~~----------------- 1115 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSL--SNAK------------------DVAHWLGCSATSTF---NFHP----------------- 1115 (1724)
T ss_dssp HHHTTSSCCEEEEEESCB--TTHH------------------HHHHHHTCCSTTEE---ECCG-----------------
T ss_pred HHhhcCCCceEEEEeCCC--CCHH------------------HHHHHhCCCCCCeE---EeCC-----------------
Confidence 1245679999993 2333 34444433210000 0000
Q ss_pred HHHHHHHHHhhhCCCceEE-EEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcCCccchhh
Q psy1544 779 LLRRLKKEVESQLPDKVEY-IIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPFMFQN 857 (1331)
Q Consensus 779 ~lRR~k~~v~~~LP~k~e~-~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~hp~l~~~ 857 (1331)
..-|-..+. +...........+ . .
T Consensus 1116 ----------~~RPvpL~~~i~~~~~~~~~~~~----------------------------~----~------------- 1140 (1724)
T 4f92_B 1116 ----------NVRPVPLELHIQGFNISHTQTRL----------------------------L----S------------- 1140 (1724)
T ss_dssp ----------GGCSSCEEEEEEEECCCSHHHHH----------------------------H----T-------------
T ss_pred ----------CCCCCCeEEEEEeccCCCchhhh----------------------------h----h-------------
Confidence 001111111 1111111000000 0 0
Q ss_pred hHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh-----------------
Q psy1544 858 IEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY----------------- 920 (1331)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~----------------- 920 (1331)
....+...+.. ...++.+||||..+..+..++..|..
T Consensus 1141 -------------------------~~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~ 1194 (1724)
T 4f92_B 1141 -------------------------MAKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEK 1194 (1724)
T ss_dssp -------------------------THHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHH
T ss_pred -------------------------hcchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHH
Confidence 00000111111 12344677777766554443333211
Q ss_pred -----------------cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEEEE----eCC-
Q psy1544 921 -----------------RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVII----FDS- 978 (1331)
Q Consensus 921 -----------------~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~VI~----~D~- 978 (1331)
....+..+||+++..+|..+.+.|.+ +.+.| |+||.+++.||||++..+||. ||.
T Consensus 1195 ~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~--G~i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg~ 1271 (1724)
T 4f92_B 1195 DLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS--GAIQV-VVASRSLCWGMNVAAHLVIIMDTQYYNGK 1271 (1724)
T ss_dssp HHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH--TSBCE-EEEEGGGSSSCCCCBSEEEEECSEEEETT
T ss_pred HHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC--CCCeE-EEEChHHHcCCCCCccEEEEecCccccCc
Confidence 12347889999999999999999985 45555 889999999999997666662 332
Q ss_pred -----CCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 979 -----DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 979 -----~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
+.++..+.|++|||+|.|....-.++.++...
T Consensus 1272 ~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1272 IHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred ccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 45788999999999999987776777666554
No 96
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.75 E-value=1.6e-18 Score=202.32 Aligned_cols=87 Identities=34% Similarity=0.623 Sum_probs=85.0
Q ss_pred CCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q psy1544 1236 DGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESV 1315 (1331)
Q Consensus 1236 ~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~ 1315 (1331)
++|.++++|+.||++..+||||++|++||||+||++||.++.|.++++|.+||+|||+||++||++||.||.+|..|+++
T Consensus 226 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 226 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp CSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred cCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1544 1316 FTKARQR 1322 (1331)
Q Consensus 1316 f~~~~~~ 1322 (1331)
|+..+++
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999887
No 97
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.74 E-value=4.5e-18 Score=218.89 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=94.9
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHh-----------cCCeEEEEcCCCCHHHHHHHHHHhcCC---CCCceEEEeeccccc
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSY-----------RGFKYMRLDGTTKAEDRGDLLKKFNAP---DSEYFIFVLSTRAGG 962 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~-----------~g~~~~~idG~~~~~eR~~~i~~Fn~~---~~~~~v~LlST~agg 962 (1331)
.+.++|||+.....++.+...|.. .++.+..+||+++.++|..+++.|... .+.+. +||||++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHHH
Confidence 356999999999999999998874 588999999999999999999999711 23344 589999999
Q ss_pred cccCCCCCCEEEEeCC------------------CCCccccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 963 LGLNLQTADTVIIFDS------------------DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 963 eGLNL~~ad~VI~~D~------------------~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
.|||++++++||.++. +.+...+.||+||++|. ++-.+|+|++....
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999766 78999999999999998 45577888875544
No 98
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=192.97 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=83.5
Q ss_pred CccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Q psy1544 1238 RVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFT 1317 (1331)
Q Consensus 1238 r~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~Na~~YN~~~S~i~~~A~~L~~~f~ 1317 (1331)
+..+++|..||++..+||||++|++||||+||++||.+|.|.|+++|.+||+|||.||++||++||.||.+|..|+++|.
T Consensus 185 ~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~ 264 (292)
T 3aad_A 185 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 264 (292)
T ss_dssp STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred CcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q psy1544 1318 KARQRVE 1324 (1331)
Q Consensus 1318 ~~~~~~~ 1324 (1331)
+.++.+.
T Consensus 265 ~~~~~~~ 271 (292)
T 3aad_A 265 QTLTEYD 271 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 99
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.73 E-value=5e-17 Score=223.31 Aligned_cols=327 Identities=16% Similarity=0.134 Sum_probs=191.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh-c-------CCCCcEEEEeCCccH-HHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK-K-------KVNGPFLIIVPLSTL-SNWSLEF 625 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~-~-------~~~~p~LIV~P~sll-~qW~~E~ 625 (1331)
.+|.+.|.+++..++ ..+.|.+++.+||+|||++|...|...+.. . ...+.+|+|+|...| .+-.++|
T Consensus 78 ~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 479999999998554 578899999999999999976555444432 1 123468999999655 6667777
Q ss_pred HHHcC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcc----cccCccEEEEeCCcccCCcchHH---
Q psy1544 626 ERWAP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPL----AKLHWKYMIIDEGHRMKNHHCKL--- 696 (1331)
Q Consensus 626 ~k~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l----~~~~~~~vIiDEaHrikn~~sk~--- 696 (1331)
.+.+. ++.|..+.|+....+. .....+|+|||++.+..-.... .--...+|||||+|.+.+.-...
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~~-----~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~ 229 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCKE-----EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEA 229 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCCT-----TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCcc-----ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHH
Confidence 66543 4677888886432111 1246799999999864321110 01246899999999886522111
Q ss_pred --HHHH---HHhccCCceeeeccCCCCCChHHHHHHHhhhcCCCCCChhHHHHHhhccccccccccccCHHHHHHHHHHH
Q psy1544 697 --THIL---NTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRL 771 (1331)
Q Consensus 697 --~~~l---~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL~p~~~~~~~~F~~~f~~p~~~~~~~~~~~~~~~~~~~~rL 771 (1331)
.+.+ .......++|+||||- .|..|+. +|+........... .
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA------------------~wL~~~~~~~~~~~--~----------- 276 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATL--PNYEDVA------------------TFLRVDPAKGLFYF--D----------- 276 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHH------------------HHTTCCHHHHEEEC--C-----------
T ss_pred HHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHH------------------HHhCCCCCCCeEEE--C-----------
Confidence 1111 1222345789999993 2344443 33221000000000 0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCceEE-EEEcCCCHHHHHHHHHHHhhhhhcccCcccccCCCcchHHHHHHHHHHHHhcC
Q psy1544 772 HKVLRPFLLRRLKKEVESQLPDKVEY-IIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCN 850 (1331)
Q Consensus 772 ~~~L~p~~lRR~k~~v~~~LP~k~e~-~v~~~ls~~q~~lY~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lrk~~~ 850 (1331)
...-|-..+. ++.+. ...... ....+ .
T Consensus 277 ----------------~~~RPvpL~~~~~~~~----------------------------~~~~~~-~~~~~---~---- 304 (1724)
T 4f92_B 277 ----------------NSFRPVPLEQTYVGIT----------------------------EKKAIK-RFQIM---N---- 304 (1724)
T ss_dssp ----------------GGGCSSCEEEECCEEC----------------------------CCCHHH-HHHHH---H----
T ss_pred ----------------CCCccCccEEEEeccC----------------------------Ccchhh-hhHHH---H----
Confidence 0000111111 11000 000000 00000 0
Q ss_pred CccchhhhHhhhhhccCCCCcccCCccccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh----------
Q psy1544 851 HPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY---------- 920 (1331)
Q Consensus 851 hp~l~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~---------- 920 (1331)
..+...+.+ ...++.+||||.++..+..++..|..
T Consensus 305 ----------------------------------~~~~~~v~~-~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~ 349 (1724)
T 4f92_B 305 ----------------------------------EIVYEKIME-HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGL 349 (1724)
T ss_dssp ----------------------------------HHHHHHHTT-CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTC
T ss_pred ----------------------------------HHHHHHHHH-HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhh
Confidence 000011111 12345677777766544333333321
Q ss_pred ---------------------------cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccccCCCCCCEE
Q psy1544 921 ---------------------------RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTV 973 (1331)
Q Consensus 921 ---------------------------~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeGLNL~~ad~V 973 (1331)
....+...||+++.++|..+.+.|.+ +.+.| |+||.+++.||||++.++|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~--G~i~v-lvaTsTLa~GVNlPa~~vV 426 (1724)
T 4f92_B 350 FLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD--KHIQV-LVSTATLAWGVNLPAHTVI 426 (1724)
T ss_dssp CSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHT--TCCCE-EEECHHHHHHSCCCBSEEE
T ss_pred hcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC--CCCeE-EEEcchhHhhCCCCCceEE
Confidence 12347889999999999999999995 44555 8999999999999988887
Q ss_pred EE----eCCC------CCccccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 974 II----FDSD------WNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 974 I~----~D~~------wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
|. ||+. .++..+.|++|||+|.|....-.++.++..+..
T Consensus 427 I~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 427 IKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp EECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred EeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 73 6654 478899999999999997766666666666543
No 100
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=1.9e-17 Score=173.03 Aligned_cols=134 Identities=25% Similarity=0.454 Sum_probs=114.7
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
..+.|+..|..++... .+.++||||++...++.|...|...|+.+..+||+++..+|..+++.|+++. +. +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~-vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YR-YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CS-EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--Ce-EEEEC
Confidence 4577999999999764 4569999999999999999999999999999999999999999999999543 44 58899
Q ss_pred cccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCHHHHHHHHHH
Q psy1544 959 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAAR 1021 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~TiEE~I~~~~~ 1021 (1331)
+++++|||++++++||+||++||+..|.|++||++|.|+...+ +.|++.. |...+....
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIE 151 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHH
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHH
Confidence 9999999999999999999999999999999999999987654 4455544 444444433
No 101
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=1.5e-17 Score=175.39 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=110.2
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
..+.|+..|..++... .+.++||||++...++.|...|...|+.+..+||+++..+|..+++.|+++. +. +|++|
T Consensus 14 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~-vLvaT 88 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RR-ILVAT 88 (172)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CS-EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--Cc-EEEEC
Confidence 3467999999999865 4569999999999999999999999999999999999999999999999544 44 58899
Q ss_pred cccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeC
Q psy1544 959 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTV 1009 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~ 1009 (1331)
+++++|||++++++||+||++||+..|.|++||++|.|+...+. .|++.
T Consensus 89 ~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~ 137 (172)
T 1t5i_A 89 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSD 137 (172)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECS
T ss_pred CchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcC
Confidence 99999999999999999999999999999999999999876544 44544
No 102
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=178.83 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=97.8
Q ss_pred ccccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEee
Q psy1544 878 YRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS 957 (1331)
Q Consensus 878 ~~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS 957 (1331)
+..+.|+..|.++|.... .+.++||||++...++.|...|...|+.+..++|+++..+|..+++.|+++. +. +|++
T Consensus 27 v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~-vLva 102 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SP-ILVA 102 (185)
T ss_dssp CCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SS-EEEE
T ss_pred eCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--Ce-EEEE
Confidence 345789999999998743 5679999999999999999999999999999999999999999999998543 44 5889
Q ss_pred ccccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 958 TRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 958 T~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
|+++++|||++++++||+||++||+..|.||+||++|.|++.. ++.|++..
T Consensus 103 T~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 103 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp EC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred cChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 9999999999999999999999999999999999999997654 45556543
No 103
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=4.6e-16 Score=197.23 Aligned_cols=125 Identities=21% Similarity=0.233 Sum_probs=107.4
Q ss_pred chhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecccc
Q psy1544 882 GKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAG 961 (1331)
Q Consensus 882 ~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ag 961 (1331)
+++..|...|..+...|.+|||||.....++.|..+|...|+++..+||++++.+|..+++.|+.+ .+. +|++|+++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g--~~~-VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG--KYD-VLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT--SCS-EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC--CeE-EEEecchh
Confidence 455566566666667788999999999999999999999999999999999999999999999853 344 58999999
Q ss_pred ccccCCCCCCEEEEeCC-----CCCccccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 962 GLGLNLQTADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 962 geGLNL~~ad~VI~~D~-----~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
++|+|++.+++||++|. ++++..|+|++||++|.+ .-.++.|+...+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 99999999999999998 899999999999999973 3456667776653
No 104
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.71 E-value=6.5e-18 Score=192.67 Aligned_cols=101 Identities=32% Similarity=0.438 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCC-CHHHHHHHHHHHHHhh
Q psy1544 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYS-SVDELQKDFKTLCRNA 1295 (1331)
Q Consensus 1217 ~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~-s~~~f~~D~~lm~~Na 1295 (1331)
.+...+..+++.+.+ .||.++++|+.||++..+||||++|++||||+||++|+ +.|. ++++|..||+|||+||
T Consensus 28 ~~~~~~~~~L~~~~~----~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na 101 (311)
T 2r0y_A 28 KFNRFISFTLDVLID----KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNC 101 (311)
T ss_dssp THHHHHHHHHHHHHH----HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHH
Confidence 345555556665553 57899999999999999999999999999999999998 5565 8999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1296 QIYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1296 ~~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
++||++||.||.+|..|+++|.+.+.+.
T Consensus 102 ~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 102 QAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999987764
No 105
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.71 E-value=4.5e-18 Score=198.61 Aligned_cols=100 Identities=31% Similarity=0.432 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCC-CHHHHHHHHHHHHHhhh
Q psy1544 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYS-SVDELQKDFKTLCRNAQ 1296 (1331)
Q Consensus 1218 ~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~-s~~~f~~D~~lm~~Na~ 1296 (1331)
+...|..+++.+.+ .|+.++++|+.||++..+||||++|++||||+||++|+ +.|. ++++|..||+|||+||+
T Consensus 79 ~~~~~~~~l~~l~~----~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~ 152 (361)
T 2r10_A 79 FNRFISFTLDVLID----KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 152 (361)
T ss_dssp HHHHHHHHHHHHHH----HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----cCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHh
Confidence 45566666666544 57889999999999999999999999999999999998 5555 89999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1544 1297 IYNEELSLIHEDSVVLESVFTKARQRV 1323 (1331)
Q Consensus 1297 ~YN~~~S~i~~~A~~L~~~f~~~~~~~ 1323 (1331)
+||++||.||.+|..|+++|...+.+.
T Consensus 153 ~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 153 AYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999988765
No 106
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.71 E-value=6.5e-17 Score=169.25 Aligned_cols=123 Identities=20% Similarity=0.342 Sum_probs=106.1
Q ss_pred hhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccc
Q psy1544 883 KFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG 962 (1331)
Q Consensus 883 K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~agg 962 (1331)
|+..|..++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. +. +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~-vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SR-ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CS-EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CE-EEEEcChhh
Confidence 999999999875 4579999999999999999999999999999999999999999999999544 44 588999999
Q ss_pred cccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCCH
Q psy1544 963 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSV 1012 (1331)
Q Consensus 963 eGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~Ti 1012 (1331)
+|+|++++++||+||++||+..+.|++||++|.|+... ++.|++.+..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHH
Confidence 99999999999999999999999999999999997664 4556776654
No 107
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=5.6e-17 Score=180.08 Aligned_cols=143 Identities=25% Similarity=0.338 Sum_probs=109.7
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC-ccHHHHHHHHHHHcC
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL-STLSNWSLEFERWAP 630 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~-sll~qW~~E~~k~~p 630 (1331)
..+..|++||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||+ .++.||..+|.+|
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred cCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3456899999999997664 4569999999999999998887654 4569999999 5669999999995
Q ss_pred CCc-EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCce
Q psy1544 631 SVN-VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 631 ~~~-v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~r 709 (1331)
+.. +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+... ..+...+...++
T Consensus 157 ~~~~v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~~---~~i~~~~~~~~~ 221 (237)
T 2fz4_A 157 GEEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESY---VQIAQMSIAPFR 221 (237)
T ss_dssp CGGGEEEESSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTTH---HHHHHTCCCSEE
T ss_pred CCCeEEEEeCCCC-----------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChHH---HHHHHhccCCEE
Confidence 456 777777642 256899999999887654432 3599999999999987542 334344578899
Q ss_pred eeeccCCCCCCh
Q psy1544 710 LLLTGTPLQNKL 721 (1331)
Q Consensus 710 llLTgTPlqN~l 721 (1331)
|+|||||.+++-
T Consensus 222 l~LSATp~r~D~ 233 (237)
T 2fz4_A 222 LGLTATFEREDG 233 (237)
T ss_dssp EEEEESCC----
T ss_pred EEEecCCCCCCC
Confidence 999999987753
No 108
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.69 E-value=4.5e-17 Score=174.64 Aligned_cols=124 Identities=18% Similarity=0.280 Sum_probs=106.6
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
..+.|+..|.++|.. .+.++||||++...++.|...|...|+.+..++|+++..+|..+++.|+++. +. +|++|
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~-vLvaT 111 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KD-VLVAT 111 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CS-EEEEC
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CE-EEEEc
Confidence 446788888888865 3568999999999999999999999999999999999999999999998543 44 58999
Q ss_pred cccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 959 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
+++++|||++++++||+||++||+..|.||+||++|.|++..+ +.|++..
T Consensus 112 ~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 9999999999999999999999999999999999999997644 4456554
No 109
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.68 E-value=2.3e-14 Score=175.63 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=100.8
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
....|+..|...+......|.+|||||.++..++.|...|...|+++..++|.....+|.-+...|.. +. ++|+|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEc
Confidence 33569999999998887788899999999999999999999999999999998554444444455652 33 69999
Q ss_pred cccccccCCC--------CCCEEEEeCCCCCccccccccccccccCCCCce
Q psy1544 959 RAGGLGLNLQ--------TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001 (1331)
Q Consensus 959 ~aggeGLNL~--------~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V 1001 (1331)
+++|+|+|+. +..+||++|.|-|+..|.|++||++|.|..-..
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 9999999998 667999999999999999999999999977643
No 110
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.68 E-value=9.8e-15 Score=185.18 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=109.3
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
..+++..|...|..+...|.+|||||.....++.|..+|...|+++..+||+++..+|..+++.|..+ .+. +|++|+
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g--~~~-VLvaT~ 497 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG--HYD-CLVGIN 497 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT--SCS-EEEESC
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC--Cce-EEEccC
Confidence 34567777777777777889999999999999999999999999999999999999999999999853 344 589999
Q ss_pred ccccccCCCCCCEEEEeCC-----CCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 960 AGGLGLNLQTADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 960 aggeGLNL~~ad~VI~~D~-----~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
++++|+|++.+++||++|. ++|+..|+|++||++|.|. -.++.|+...+
T Consensus 498 ~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 498 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 9999999999999999998 8999999999999999863 34555666654
No 111
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=166.22 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=105.1
Q ss_pred chhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecccc
Q psy1544 882 GKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAG 961 (1331)
Q Consensus 882 ~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ag 961 (1331)
.|+..|..++... .+.++||||++...++.|...|...|+.+..+||+++..+|..+++.|+++. +. +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~-vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EK-VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CS-EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--Ce-EEEEecch
Confidence 4899999998765 4569999999999999999999999999999999999999999999999543 44 58899999
Q ss_pred ccccCCCCCCEEEEeCCC------CCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 962 GLGLNLQTADTVIIFDSD------WNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 962 geGLNL~~ad~VI~~D~~------wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
++|||++.+++||+||++ |++..|.||+||++|.|+. -.++.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6678899999999999965 45666777664
No 112
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=1.1e-15 Score=167.32 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=115.7
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHc---CC
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWA---PS 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~---p~ 631 (1331)
.|++||.+++..++. +.++|+.++||+|||++++..+...+.......++|||||+. +..||.+++.++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998885 678999999999999988777766554433344799999995 5599999999986 36
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCc-c--hHHHHHHHHhccC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNH-H--CKLTHILNTFYVA 706 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~-~--sk~~~~l~~~~~~ 706 (1331)
+.+.++.|......... .......+|+|+|++.+... ...+....+++|||||||++.+. . ..+...+..+...
T Consensus 112 ~~v~~~~g~~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 190 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEE-VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 190 (220)
T ss_dssp CCEEEESCCSCHHHHHH-HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS
T ss_pred ceEEEEeCCCChHHHHH-HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCc
Confidence 78888888755443322 23345679999999988753 22233347899999999999542 2 2233333333335
Q ss_pred CceeeeccCCCCCChHH
Q psy1544 707 PHRLLLTGTPLQNKLPE 723 (1331)
Q Consensus 707 ~~rllLTgTPlqN~l~E 723 (1331)
.++++|||||- +...+
T Consensus 191 ~~~i~~SAT~~-~~~~~ 206 (220)
T 1t6n_A 191 KQVMMFSATLS-KEIRP 206 (220)
T ss_dssp SEEEEEESCCC-TTTHH
T ss_pred CeEEEEEeecC-HHHHH
Confidence 67899999984 33444
No 113
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.45 E-value=1.2e-17 Score=175.66 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=106.5
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRA 960 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a 960 (1331)
+.|+.+|..++.. ..+.++||||++...++.|...|...|+.+..+||+++..+|..+++.|+++ .+. +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~-vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG--RVN-VLVATDV 89 (170)
Confidence 5688888888875 3457999999999999999999999999999999999999999999999854 334 5899999
Q ss_pred cccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEE
Q psy1544 961 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 1003 (1331)
Q Consensus 961 ggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V 1003 (1331)
+++|||++++++||+||++||+..+.|++||++|.|+...+.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999998776544
No 114
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.64 E-value=5.9e-16 Score=168.88 Aligned_cols=125 Identities=20% Similarity=0.282 Sum_probs=109.7
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
..+.|+..|..++... .+.++||||.+...++.|...|...|+.+..+||+++..+|..+++.|+++ .+. +|++|
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~-vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG--EVR-VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS--SCC-EEEEC
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC--CCe-EEEec
Confidence 3477999999999753 467999999999999999999999999999999999999999999999854 344 48999
Q ss_pred cccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCC
Q psy1544 959 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVN 1010 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~ 1010 (1331)
+++++|||++++++||+||++|++..|.||+||++|.|+.. .++.|++..
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 99999999999999999999999999999999999999765 555566654
No 115
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.63 E-value=1.5e-15 Score=164.42 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=113.5
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh---cCCCCcEEEEeCC-ccHHHHHHHHHHHcC
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK---KKVNGPFLIIVPL-STLSNWSLEFERWAP 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~---~~~~~p~LIV~P~-sll~qW~~E~~k~~p 630 (1331)
..|++||.+++.+++. +.++|+..+||+|||++++..+...+.. ......+|||||+ .+..||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 4799999999998874 6789999999999999866655544332 1234569999999 555999999999998
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHHhccC
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~~~~ 706 (1331)
.+.+..+.|.......... .....+|+|+|++.+.... ..+....+++|||||||++.+. ...+...+..+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEA--LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp TSCEEEECSSSCSHHHHHH--HHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred cceEEEEECCCChHHHHHH--hhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 8888888776544332222 1246899999999886532 2233346899999999998543 33444444444345
Q ss_pred CceeeeccCC
Q psy1544 707 PHRLLLTGTP 716 (1331)
Q Consensus 707 ~~rllLTgTP 716 (1331)
.+++++|||+
T Consensus 176 ~~~i~~SAT~ 185 (207)
T 2gxq_A 176 RQTLLFSATL 185 (207)
T ss_dssp SEEEEECSSC
T ss_pred CeEEEEEEec
Confidence 6789999997
No 116
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=165.87 Aligned_cols=156 Identities=20% Similarity=0.277 Sum_probs=103.6
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCccH-HH-HHHHHHHH
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK---VNGPFLIIVPLSTL-SN-WSLEFERW 628 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~---~~~p~LIV~P~sll-~q-W~~E~~k~ 628 (1331)
..+|++||.+++.+++. +.++|+.++||+|||++++.++..++.... ..+++|||||+..+ .| |..++.+|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45899999999998874 678999999999999999888877655432 24579999999555 77 99999998
Q ss_pred cC-CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCc--------ccccCccEEEEeCCcccCCcch--HHH
Q psy1544 629 AP-SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP--------LAKLHWKYMIIDEGHRMKNHHC--KLT 697 (1331)
Q Consensus 629 ~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~--------l~~~~~~~vIiDEaHrikn~~s--k~~ 697 (1331)
.. .+.+..+.|........... ....+|+|+||+.+...... +....|++|||||||++..... .+.
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEV--VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHH--HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hccCceEEEEeCCcccchhHHhh--ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 76 46777777764322111111 12578999999998764322 3334789999999999964322 111
Q ss_pred HH-HHHhc-------------cCCceeeeccC
Q psy1544 698 HI-LNTFY-------------VAPHRLLLTGT 715 (1331)
Q Consensus 698 ~~-l~~~~-------------~~~~rllLTgT 715 (1331)
.. +.... ...++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 11 11110 34578999998
No 117
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.61 E-value=2.2e-15 Score=165.01 Aligned_cols=162 Identities=15% Similarity=0.101 Sum_probs=113.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc-HHHHHHHHHHHcC---
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST-LSNWSLEFERWAP--- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p--- 630 (1331)
.++++||.+++.+++. +.++|+..+||+|||++++..+...+........+|||||+.. ..||.+++.+++.
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 4799999999998886 6889999999999999866655554443333456999999954 5899999998875
Q ss_pred ---CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCcc--hHHHHHHHHh
Q psy1544 631 ---SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTF 703 (1331)
Q Consensus 631 ---~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~ 703 (1331)
.+.+..+.|+........ .....++|+|+|++.+... ...+....+++|||||||++.+.+ ..+...+..+
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~--~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALE--KLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTC--CCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cccceEEEEEeCCCCHHHHHH--HcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 456667777654332211 1124678999999988753 222333468999999999986433 3444445444
Q ss_pred ccCCceeeeccCCCCCChHH
Q psy1544 704 YVAPHRLLLTGTPLQNKLPE 723 (1331)
Q Consensus 704 ~~~~~rllLTgTPlqN~l~E 723 (1331)
....++++||||+ .+.+.+
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHH
T ss_pred CcccEEEEEecCC-CHHHHH
Confidence 3456789999997 444444
No 118
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=5.1e-15 Score=160.21 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=113.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC---
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--- 630 (1331)
.+|++||.+++..++. +.++|+..+||+|||++++..+...+.......++|||||+..+ .||...+.+++.
T Consensus 24 ~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4799999999998874 67899999999999988766555444333344569999999655 899999998874
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccC
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVA 706 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~ 706 (1331)
+..+..+.|.......... .....+|+|+|++.+.... ..+....+++|||||||++...+ ..+...+..+...
T Consensus 100 ~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMR--LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp SCCEEEECSSSCHHHHHHH--TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred CceEEEEeCCccHHHHHHh--cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 5677777777655443322 2357899999999886532 22333468999999999986533 2333444444346
Q ss_pred CceeeeccCC
Q psy1544 707 PHRLLLTGTP 716 (1331)
Q Consensus 707 ~~rllLTgTP 716 (1331)
.++++||||+
T Consensus 178 ~~~l~~SAT~ 187 (206)
T 1vec_A 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred ceEEEEEeeC
Confidence 7789999997
No 119
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.61 E-value=4.5e-15 Score=163.91 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=111.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC---
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP--- 630 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--- 630 (1331)
..+++||.+++..++. +.++|+..+||+|||++++..+...+........+|||||+. +..||.+++.+++.
T Consensus 45 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 120 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 120 (230)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3699999999998774 778999999999999986544443333333345699999995 55999999999863
Q ss_pred CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccCCc---chHHHHHHHHhcc
Q psy1544 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTFYV 705 (1331)
Q Consensus 631 ~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~~~ 705 (1331)
++.+.++.|+........ ...+.+|+|+|++.+... ...+....+++|||||||++.+. ...+...+..+..
T Consensus 121 ~~~~~~~~g~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKT---RLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp TCCEEEECTTSCHHHHHH---HTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred CceEEEEeCCCCHHHHHH---hccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 677888888654433222 224689999999998764 23333346899999999999543 3344445554434
Q ss_pred CCceeeeccCC
Q psy1544 706 APHRLLLTGTP 716 (1331)
Q Consensus 706 ~~~rllLTgTP 716 (1331)
..++++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 66789999996
No 120
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.60 E-value=6e-15 Score=163.46 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=112.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc----CCCCcEEEEeCCc-cHHHHHHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK----KVNGPFLIIVPLS-TLSNWSLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~----~~~~p~LIV~P~s-ll~qW~~E~~k~~ 629 (1331)
..+++||.+++.+++. +.++|+..+||+|||++++..+...+... .....+|||||+. +..||..++.+++
T Consensus 46 ~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 4799999999998874 78899999999999998766555443321 2244599999995 5589999999998
Q ss_pred CC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCcc--hHHHHHHHH
Q psy1544 630 PS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNT 702 (1331)
Q Consensus 630 p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~ 702 (1331)
.. +.+..+.|.......... ....+|+|+|++.+.... ..+....+++|||||||++.+.+ ..+...+..
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER---INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH---HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCCeeEEEEECCCCHHHHHHh---CCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 64 677777776544332222 247899999999986542 22334478999999999986543 344455554
Q ss_pred hccCCceeeeccCCC
Q psy1544 703 FYVAPHRLLLTGTPL 717 (1331)
Q Consensus 703 ~~~~~~rllLTgTPl 717 (1331)
+....++++||||+-
T Consensus 199 ~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 199 LPKKRQTLLFSATQT 213 (236)
T ss_dssp SCTTSEEEEEESSCC
T ss_pred CCCCCeEEEEEeeCC
Confidence 434567899999973
No 121
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.59 E-value=5.5e-15 Score=162.29 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=106.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 631 (1331)
..|++||.+++..++. +.++|+..+||+|||++++..+...+........+|||||+..+ .||..++.+++. +
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998874 67899999999999998544444333333344569999999554 899999999875 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~~~~~~ 707 (1331)
+.+..+.|......... .....+|+|+|++.+.... ..+....+++|||||||++.+. ...+...+..+....
T Consensus 111 ~~~~~~~g~~~~~~~~~---~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE---GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CCEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceEEEEeCCcchHHHHh---cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 66777777654332221 1234899999999986532 2233346899999999998543 333444554443456
Q ss_pred ceeeeccCCC
Q psy1544 708 HRLLLTGTPL 717 (1331)
Q Consensus 708 ~rllLTgTPl 717 (1331)
++++||||+-
T Consensus 188 ~~i~lSAT~~ 197 (224)
T 1qde_A 188 QVVLLSATMP 197 (224)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEEeecC
Confidence 7899999973
No 122
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.59 E-value=9.1e-15 Score=163.58 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=113.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 631 (1331)
..+++||.+++..++. +.++|+..+||+|||++++..+...+........+|||||+..+ .||.++|.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 4799999999998874 78899999999999999766665554444444569999999655 899999999865 4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCcc--hHHHHHHHHhccC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNHH--CKLTHILNTFYVA 706 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~~--sk~~~~l~~~~~~ 706 (1331)
+.+.++.|......... ....+.+|+|+|++.+.... ..+....+++|||||||++.+.+ ..+...+..+...
T Consensus 140 ~~~~~~~g~~~~~~~~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 217 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSL--ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217 (249)
T ss_dssp CCEEEECTTSCHHHHHH--HHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSS
T ss_pred eeEEEEECCCChHHHHH--HhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCC
Confidence 66677777644333222 12357899999999987542 22333468999999999986543 3344455444346
Q ss_pred CceeeeccCCC
Q psy1544 707 PHRLLLTGTPL 717 (1331)
Q Consensus 707 ~~rllLTgTPl 717 (1331)
.++++||||+-
T Consensus 218 ~~~l~~SAT~~ 228 (249)
T 3ber_A 218 RKTFLFSATMT 228 (249)
T ss_dssp SEEEEEESSCC
T ss_pred CeEEEEeccCC
Confidence 77899999973
No 123
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.57 E-value=1e-14 Score=161.81 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=108.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc-cHHHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS-TLSNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s-ll~qW~~E~~k~~p--~ 631 (1331)
..|++||.+++..++. +.++|+..+||+|||++++..+...+........+|||||+. +..||..++.+++. +
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 4699999999998874 678999999999999986665555443333445699999995 55899999999975 3
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhc--cCcccccCccEEEEeCCcccC--CcchHHHHHHHHhccCC
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKD--KGPLAKLHWKYMIIDEGHRMK--NHHCKLTHILNTFYVAP 707 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~--~~~l~~~~~~~vIiDEaHrik--n~~sk~~~~l~~~~~~~ 707 (1331)
..+..+.|......... ....+.++|+|+|++.+... ...+....+++|||||||++. +....+...+..+....
T Consensus 127 ~~~~~~~g~~~~~~~~~-~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 127 ATCHACIGGTNVRNEMQ-KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CCEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceEEEEECCCchHHHHH-HHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 55666666544332221 22334589999999987653 222333468999999999984 34445555665554566
Q ss_pred ceeeeccCCC
Q psy1544 708 HRLLLTGTPL 717 (1331)
Q Consensus 708 ~rllLTgTPl 717 (1331)
+.++||||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 7899999973
No 124
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.56 E-value=6.5e-15 Score=168.52 Aligned_cols=126 Identities=19% Similarity=0.277 Sum_probs=107.8
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeec
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLST 958 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST 958 (1331)
..+.|+..|.+++.... +.++||||.....++.|...|...|+.+..+||++++.+|..+++.|+.+ .+. +||+|
T Consensus 11 ~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g--~~~-vLVaT 85 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG--EVR-VLVAT 85 (300)
T ss_dssp CSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT--SCC-EEEEC
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC--Cce-EEEEe
Confidence 34679999999997654 67999999999999999999999999999999999999999999999854 344 58999
Q ss_pred cccccccCCCCCCEEEEeCCCCCccccccccccccccCCCCceEEEEEeeCCC
Q psy1544 959 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNS 1011 (1331)
Q Consensus 959 ~aggeGLNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiGQ~k~V~V~rli~~~T 1011 (1331)
+++++|||++++++||+||++||+..|.|++||++|.|+.. .+|.|++...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 99999999999999999999999999999999999999764 5566676653
No 125
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.54 E-value=4.5e-14 Score=158.17 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=109.7
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC---------CCCcEEEEeCCc-cHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK---------VNGPFLIIVPLS-TLSNWSLE 624 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~---------~~~p~LIV~P~s-ll~qW~~E 624 (1331)
..|++||.+++..++. +.++|+..+||+|||++++..+...+.... ....+|||||+. +..||.++
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998875 678999999999999987666555443321 224699999995 55999999
Q ss_pred HHHHcCC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHH
Q psy1544 625 FERWAPS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTH 698 (1331)
Q Consensus 625 ~~k~~p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~ 698 (1331)
+.+++.. +.+..+.|.......... .....+|+|+|++.+.... ..+....+++|||||||++.+. ...+..
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIRE--VQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHH--HSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHH--hCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 9998753 566666665543333222 2356899999999987642 2233346789999999998543 334444
Q ss_pred HHHHh--cc--CCceeeeccCC
Q psy1544 699 ILNTF--YV--APHRLLLTGTP 716 (1331)
Q Consensus 699 ~l~~~--~~--~~~rllLTgTP 716 (1331)
.+..+ .. ..++++||||+
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSC
T ss_pred HHhhccCCCCCCcEEEEEEEeC
Confidence 44422 11 34689999997
No 126
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.52 E-value=8.5e-14 Score=153.30 Aligned_cols=156 Identities=13% Similarity=0.212 Sum_probs=107.8
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc------CCCCcEEEEeCCccH-HHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK------KVNGPFLIIVPLSTL-SNWSLEFER 627 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~------~~~~p~LIV~P~sll-~qW~~E~~k 627 (1331)
.++++||.+++..++. +.++|+..+||+|||++++..+...+... .....+|||||+..+ .||.+++.+
T Consensus 41 ~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 4799999999998874 78899999999999998765554433221 234559999999655 899999999
Q ss_pred Hc-CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHH
Q psy1544 628 WA-PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNT 702 (1331)
Q Consensus 628 ~~-p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~ 702 (1331)
+. .+..+..+.|.......... ...+++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIED--ISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp HCCTTCCEEEECC------CHHH--HHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred hcccCceEEEEECCCChHHHHHH--hcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 86 45667766665443322221 2346899999999987532 2233346799999999998653 3344455555
Q ss_pred hccCCceeeeccCC
Q psy1544 703 FYVAPHRLLLTGTP 716 (1331)
Q Consensus 703 ~~~~~~rllLTgTP 716 (1331)
+....+.++||||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 54566789999995
No 127
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=154.57 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=110.3
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc----CCCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK----KVNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~----~~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
.+|+++|.+++..++. +.++|+..+||+|||++++..+...+... .....+|||||+..| .||..++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 4699999999998876 67889999999999998765555444331 124459999999655 89999999987
Q ss_pred CC--CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCCc--chHHHHHHHH
Q psy1544 630 PS--VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNT 702 (1331)
Q Consensus 630 p~--~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~ 702 (1331)
.. ..+..+.|.......... ...+.+|+|+|++.+.... ..+.-.++++|||||||++.+. ...+...+..
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~--~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQK--LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHHH--HHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHHH--hcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 53 455666665443332222 1235899999999886532 2223336799999999998553 3344455555
Q ss_pred hccCCceeeeccCCC
Q psy1544 703 FYVAPHRLLLTGTPL 717 (1331)
Q Consensus 703 ~~~~~~rllLTgTPl 717 (1331)
+....++++||||+-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 544567899999973
No 128
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.47 E-value=3.4e-13 Score=149.99 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=109.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc-----CCCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK-----KVNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~-----~~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
..+++||.+++..++. +.++|+..+||+|||++++..+...+... .....+|||||+..+ .||.+.+.++
T Consensus 50 ~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 4699999999998875 78899999999999999765555444421 234459999999655 8998888887
Q ss_pred cC--CCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc--CcccccCccEEEEeCCcccCCc--chHHHHHHHH
Q psy1544 629 AP--SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK--GPLAKLHWKYMIIDEGHRMKNH--HCKLTHILNT 702 (1331)
Q Consensus 629 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~--~~l~~~~~~~vIiDEaHrikn~--~sk~~~~l~~ 702 (1331)
+. ++.+..+.|.......... ...+.+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRD--LERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHH--HHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred HhhcCceEEEEECCCChHHHHHH--hcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 53 5666766666544333222 2236899999999886532 2223346789999999998553 3334444444
Q ss_pred hccCCceeeeccCC
Q psy1544 703 FYVAPHRLLLTGTP 716 (1331)
Q Consensus 703 ~~~~~~rllLTgTP 716 (1331)
+....+++++|||.
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 43456789999995
No 129
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.44 E-value=4.7e-13 Score=149.08 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHh-cCCCCcEEEEeCCccH-HHHHHHHHHHcCC-
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEK-KKVNGPFLIIVPLSTL-SNWSLEFERWAPS- 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~-~~~~~p~LIV~P~sll-~qW~~E~~k~~p~- 631 (1331)
..+++||.+++..++. +.++|+..+||+|||++++..+...+.. ......+|||||+..+ .||.+++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3699999999998774 6789999999999999866555444432 2233459999999655 8999999999764
Q ss_pred -CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc----CcccccCccEEEEeCCcccCCc-----chHHHHHHH
Q psy1544 632 -VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK----GPLAKLHWKYMIIDEGHRMKNH-----HCKLTHILN 701 (1331)
Q Consensus 632 -~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~----~~l~~~~~~~vIiDEaHrikn~-----~sk~~~~l~ 701 (1331)
+.+..+.|....... .......+++|+|+|++.+.... ..+...++++|||||||++... ...+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKK-FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCCEECCCHHHHHHTT-TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred CceEEEEecCccHHHH-hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 444544443221111 01122456799999999986532 1233346899999999999542 223333333
Q ss_pred Hhc-cCCceeeeccCC
Q psy1544 702 TFY-VAPHRLLLTGTP 716 (1331)
Q Consensus 702 ~~~-~~~~rllLTgTP 716 (1331)
.+. ...++++||||.
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 322 245779999997
No 130
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.33 E-value=1.1e-11 Score=154.15 Aligned_cols=91 Identities=8% Similarity=0.220 Sum_probs=54.6
Q ss_pred HHHHhhhhh-hcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccc
Q psy1544 886 LLDRILPKL-KSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLG 964 (1331)
Q Consensus 886 ~L~~lL~~l-~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeG 964 (1331)
.+.+.|..+ ...+.++|||+.+...++.+...|.. +. +.+.|.. .+|..+++.|+.+ .. ..|.+++...++|
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~EG 443 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceecc
Confidence 344444443 34566899999999999999888764 33 4556654 4789999999862 22 2233488999999
Q ss_pred cCCCC----CCEEEEeCCCCCcc
Q psy1544 965 LNLQT----ADTVIIFDSDWNPH 983 (1331)
Q Consensus 965 LNL~~----ad~VI~~D~~wNp~ 983 (1331)
||+++ +..||+++.|+-+.
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp --------CEEEEEEESCCCCCT
T ss_pred eecCCCcccccEEEEECCCCCCC
Confidence 99997 89999999986443
No 131
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=148.65 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=105.8
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc---
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA--- 629 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~--- 629 (1331)
...++++|..++..++. ..+.+.|+..+||+|||++.+..+...+........+|||||+..| .|+...+..++
T Consensus 112 ~~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~ 189 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (300)
T ss_dssp CCSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhC
Confidence 35799999999987763 1237889999999999998654443333333333359999999766 78888887775
Q ss_pred CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhcc---CcccccCccEEEEeCCcccCC---cchHHHHHHHHh
Q psy1544 630 PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDK---GPLAKLHWKYMIIDEGHRMKN---HHCKLTHILNTF 703 (1331)
Q Consensus 630 p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~---~~l~~~~~~~vIiDEaHrikn---~~sk~~~~l~~~ 703 (1331)
+++.+.++.|....... .....+|+|+|++.+.... ..+....+.+|||||||++.+ .......++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~-----~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 190 PELKLAYAVRGNKLERG-----QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TTCCEEEESTTCCCCTT-----CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CCcEEEEEeCCccHhhh-----hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 45677766665432111 1346789999999987643 233334679999999999864 222233333333
Q ss_pred ccCCceeeeccCCC
Q psy1544 704 YVAPHRLLLTGTPL 717 (1331)
Q Consensus 704 ~~~~~rllLTgTPl 717 (1331)
....+++++|||+-
T Consensus 265 ~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 265 PRNCQMLLFSATFE 278 (300)
T ss_dssp CTTCEEEEEESCCC
T ss_pred CCCCEEEEEeccCC
Confidence 34567899999973
No 132
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.31 E-value=4.4e-11 Score=149.37 Aligned_cols=149 Identities=18% Similarity=0.177 Sum_probs=94.8
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH----HHHHHHHHHH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL----SNWSLEFERW 628 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll----~qW~~E~~k~ 628 (1331)
.|...++-|..|+--++. +. |....||+|||++++..+. +.... ...++||||+..| ..|...|.++
T Consensus 76 lG~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALT--GKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp TCCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred hCCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 455788999999987663 33 8889999999997644332 11111 2248999999887 4577777777
Q ss_pred cCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHH-----hcc----Cccccc---CccEEEEeCCcccCCcchHH
Q psy1544 629 APSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVI-----KDK----GPLAKL---HWKYMIIDEGHRMKNHHCKL 696 (1331)
Q Consensus 629 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~-----~~~----~~l~~~---~~~~vIiDEaHrikn~~sk~ 696 (1331)
+ ++.+.++.|+...... . .....+|++.|+..+- ... ..+..- ...++||||+|+|...
T Consensus 147 l-GLsv~~i~Gg~~~~~r--~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD---- 217 (997)
T 2ipc_A 147 L-GLSVGVIQHASTPAER--R--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID---- 217 (997)
T ss_dssp T-TCCEEECCTTCCHHHH--H--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS----
T ss_pred c-CCeEEEEeCCCCHHHH--H--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh----
Confidence 6 5666666665332111 1 1125799999988872 221 112222 5789999999965322
Q ss_pred HHHHHHhccCCceeeeccCCCCCChHHHHHHHh
Q psy1544 697 THILNTFYVAPHRLLLTGTPLQNKLPELWALLN 729 (1331)
Q Consensus 697 ~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~ 729 (1331)
.+..-+++|| |.... ..+|..++
T Consensus 218 --------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 218 --------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp --------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred --------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 2333489999 87766 45554443
No 133
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.19 E-value=3.2e-11 Score=125.86 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCccccccccccCcCCCCcccccccCCCCHhHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy1544 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGKYSSVDELQKDFKTLCR 1293 (1331)
Q Consensus 1214 ~~~~~~~~~~~i~~~l~~~~d~~gr~~~~~F~~~p~~~~~PdYy~iIk~Pmdl~~Ik~kl~~~~Y~s~~~f~~D~~lm~~ 1293 (1331)
....+...+..|++.|..++. +++|+. | .++.||||.+|++|++.|.|.|+.+|..||.|||.
T Consensus 72 ~~~el~~~l~~vl~~L~~~~~------s~~~~~---------y--~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~ 134 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNSRT------TSHLLR---------Y--RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQ 134 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTCHH------HHHHHT---------C--CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc------cHhhhh---------h--hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 345677778888888887654 889977 3 25999999999999999999999999999999999
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1544 1294 NAQIYNEELSLIHEDSVVLESVFTKARQRVESGED 1328 (1331)
Q Consensus 1294 Na~~YN~~~S~i~~~A~~L~~~f~~~~~~~~~~~~ 1328 (1331)
||..||++.+.+..++..|+.+|.+.++++.+.-.
T Consensus 135 n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 135 AAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999987543
No 134
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.02 E-value=1.3e-08 Score=127.95 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=60.9
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--CC
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--SV 632 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~~ 632 (1331)
++||+|.+.+..+...+.++.++|+..+||+|||+..+..+...+... ..+++|++|+..+ .|+.+++.++.. .+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999998888888899999999999999998766554443332 3469999999655 899999877642 45
Q ss_pred cEEEecC
Q psy1544 633 NVVAYKG 639 (1331)
Q Consensus 633 ~v~~~~g 639 (1331)
+++++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5544443
No 135
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.85 E-value=4e-09 Score=116.60 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=92.0
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHH-HHHhcC-CCCcEEEEeCCccH-HHHHHHHHHHcCC-
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITY-LMEKKK-VNGPFLIIVPLSTL-SNWSLEFERWAPS- 631 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~-l~~~~~-~~~p~LIV~P~sll-~qW~~E~~k~~p~- 631 (1331)
.++++|.+++..+.. +...++..++|+|||.+...++.. +...+. ....+++++|...+ .+....+......
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 588999999998875 778899999999999765544443 332221 12358999999766 5666667655432
Q ss_pred C-cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCccc-CCcchH--HHHHHHHhccCC
Q psy1544 632 V-NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM-KNHHCK--LTHILNTFYVAP 707 (1331)
Q Consensus 632 ~-~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHri-kn~~sk--~~~~l~~~~~~~ 707 (1331)
+ ..+.|..... ........+|+|+|++.+...... .-.++++|||||||++ -+.... ..+.+.......
T Consensus 137 ~~~~~g~~~~~~------~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 137 PGKSCGYSVRFE------SILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV 209 (235)
T ss_dssp TTSSEEEEETTE------EECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS
T ss_pred cCceEEEeechh------hccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC
Confidence 1 1111111000 001124578999999888765321 1236799999999984 222221 223333333456
Q ss_pred ceeeeccCC
Q psy1544 708 HRLLLTGTP 716 (1331)
Q Consensus 708 ~rllLTgTP 716 (1331)
+.+++|||+
T Consensus 210 ~~il~SAT~ 218 (235)
T 3llm_A 210 RIVLMSATI 218 (235)
T ss_dssp EEEEEECSS
T ss_pred eEEEEecCC
Confidence 789999996
No 136
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.76 E-value=2.6e-08 Score=124.11 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=94.0
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC--C
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP--S 631 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p--~ 631 (1331)
.++||+|.+.+..+...+..+.++|+..+||+|||+..+..+.. ...++||++|+..+ .||.+++.++.. +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37899999999988888888889999999999999987655543 24579999999655 899999987643 5
Q ss_pred CcEEEecCChhH---------------------------------HHHHH----------------HHhhccCccEEEee
Q psy1544 632 VNVVAYKGSPHL---------------------------------RKTLQ----------------AQMKASKFNVLLTT 662 (1331)
Q Consensus 632 ~~v~~~~g~~~~---------------------------------r~~~~----------------~~~~~~~~~VvItT 662 (1331)
+++.++.|.... ...+. ........+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 666766663221 01110 01123467999999
Q ss_pred HHHHHhcc--Cccc-ccCccEEEEeCCcccCC
Q psy1544 663 YEYVIKDK--GPLA-KLHWKYMIIDEGHRMKN 691 (1331)
Q Consensus 663 ye~l~~~~--~~l~-~~~~~~vIiDEaHrikn 691 (1331)
|.++..+. ..+. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998752 2121 12567899999999976
No 137
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.43 E-value=0.00061 Score=86.27 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=56.0
Q ss_pred cccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc-HHHHHHHHHHHc
Q psy1544 552 LVNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST-LSNWSLEFERWA 629 (1331)
Q Consensus 552 l~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~ 629 (1331)
.++..|-+.|.+||..++. ...-.|+..+.|+|||.+.+.+|.+++..+ .++||++|++. +.+....+....
T Consensus 185 ~~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhcC
Confidence 3456799999999998875 333468899999999999999999888753 46999999954 466666666543
No 138
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.33 E-value=0.0015 Score=79.13 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=83.6
Q ss_pred CCccHHHHHHHHHHHHHhcCCC-ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNL-NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~-~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
..|-+-|.+++..++..+..+. ..+|....|+|||.++..++.++...+. ..+++++|+.....-..+.. +..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhh----ccc
Confidence 4699999999998877655544 6688889999999998888888876643 45899999976533222211 111
Q ss_pred EEEecCChhHHHHHHHHh-hccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeee
Q psy1544 634 VVAYKGSPHLRKTLQAQM-KASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLL 712 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~-~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllL 712 (1331)
+..++. .+.... .......+.. ...-....+++|||||+|.+. ......+........++++
T Consensus 98 ~~T~h~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~iiiDE~~~~~---~~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIHS------ILKINPVTYEENVLFEQ--------KEVPDLAKCRVLICDEVSMYD---RKLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHHH------HHTEEEEECSSCEEEEE--------CSCCCCSSCSEEEESCGGGCC---HHHHHHHHHHSCTTCEEEE
T ss_pred hhhHHH------HhccCcccccccchhcc--------cccccccCCCEEEEECchhCC---HHHHHHHHHhccCCCEEEE
Confidence 111110 000000 0000000000 001112357999999999763 2344445444455678999
Q ss_pred ccCCCCC
Q psy1544 713 TGTPLQN 719 (1331)
Q Consensus 713 TgTPlqN 719 (1331)
.|-+.|.
T Consensus 161 vGD~~Ql 167 (459)
T 3upu_A 161 IGDNKQI 167 (459)
T ss_dssp EECTTSC
T ss_pred ECCHHHc
Confidence 9988763
No 139
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.32 E-value=0.0016 Score=81.97 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=93.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 633 (1331)
..|.+.|..++..++. +...++..+.|+|||.++..++..+... ...++||++|+... .+....+.+.. ..
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~~--~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhcC--Ce
Confidence 3689999999997763 4456888999999999988888877643 24569999999655 55555555432 12
Q ss_pred EEEecCCh------------------------h-----------------HHHHHH------HHhhccCccEEEeeHHHH
Q psy1544 634 VVAYKGSP------------------------H-----------------LRKTLQ------AQMKASKFNVLLTTYEYV 666 (1331)
Q Consensus 634 v~~~~g~~------------------------~-----------------~r~~~~------~~~~~~~~~VvItTye~l 666 (1331)
++-+.+.. . ..+... ........+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 21111100 0 000000 001134578999987665
Q ss_pred HhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCC
Q psy1544 667 IKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQN 719 (1331)
Q Consensus 667 ~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN 719 (1331)
.. ..+....|++||||||..+....+ +..+.....+++|-|=|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~-----li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC-----MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH-----HHHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH-----HHHHHhcCCeEEEecChhcc
Confidence 32 235566899999999977654431 22222334678899988764
No 140
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.003 Score=81.50 Aligned_cols=149 Identities=16% Similarity=0.235 Sum_probs=93.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 633 (1331)
..|.+.|.++|..++. +...++..+.|+|||.++..++.++.... ..++||++|+... .+....+.+.. +.
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4689999999997763 34468888999999999888888876542 3469999999655 55666666542 22
Q ss_pred EEEecCC----------------------h-hHH-----------------HHHH------HHhhccCccEEEeeHHHHH
Q psy1544 634 VVAYKGS----------------------P-HLR-----------------KTLQ------AQMKASKFNVLLTTYEYVI 667 (1331)
Q Consensus 634 v~~~~g~----------------------~-~~r-----------------~~~~------~~~~~~~~~VvItTye~l~ 667 (1331)
++-+.+. . ..+ +.+. ........+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 2111100 0 000 0000 0111245689999987664
Q ss_pred hccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCC
Q psy1544 668 KDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQN 719 (1331)
Q Consensus 668 ~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN 719 (1331)
. ..+.. .|++||||||..+.... .+..+.....+++|-|=|.|-
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~-----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE-----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH-----HHHHHTTTBSEEEEEECTTSC
T ss_pred h--HHHhc-cCCEEEEECccccchHH-----HHHHHHhCCCEEEEEeCcccc
Confidence 2 23444 89999999998765432 122222345688898988763
No 141
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.07 E-value=0.0023 Score=79.54 Aligned_cols=132 Identities=18% Similarity=0.100 Sum_probs=81.8
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
+..|-+.|..++..++. +...+|....|+|||.++.+++..+... ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45789999999998763 5667888999999999888877766543 3569999999776655444211 11
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
...++ ....... . .+.. ..-....+++|||||||.+... ....+........+++|.
T Consensus 256 a~Tih----------~ll~~~~-~-------~~~~--~~~~~~~~dvlIIDEasml~~~---~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTVH----------RLLGYGP-Q-------GFRH--NHLEPAPYDLLIVDEVSMMGDA---LMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEHH----------HHTTEET-T-------EESC--SSSSCCSCSEEEECCGGGCCHH---HHHHHHTTSCTTCEEEEE
T ss_pred HHHHH----------HHHcCCc-c-------hhhh--hhcccccCCEEEEcCccCCCHH---HHHHHHHhCcCCCEEEEE
Confidence 11100 0000000 0 0000 1112236899999999987533 333333333566789999
Q ss_pred cCCCCC
Q psy1544 714 GTPLQN 719 (1331)
Q Consensus 714 gTPlqN 719 (1331)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999874
No 142
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.05 E-value=0.0036 Score=80.67 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=92.4
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVN 633 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~ 633 (1331)
..|.+.|.+++..++. +...++..+.|+|||.++..++..+... ...++||++|+... .+....+.... +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~g--~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQTG--LK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTTT--CC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHhC--cc
Confidence 4689999999997763 4456888999999999988888877653 23569999999655 45555554432 22
Q ss_pred EEEecCC------------------------hhHHH-----------------HHH------HHhhccCccEEEeeHHHH
Q psy1544 634 VVAYKGS------------------------PHLRK-----------------TLQ------AQMKASKFNVLLTTYEYV 666 (1331)
Q Consensus 634 v~~~~g~------------------------~~~r~-----------------~~~------~~~~~~~~~VvItTye~l 666 (1331)
++-+.+. ...++ ... ........+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 2111100 00000 000 001123467899987665
Q ss_pred HhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCC
Q psy1544 667 IKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQN 719 (1331)
Q Consensus 667 ~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN 719 (1331)
.. ..+....|++||||||..+.... ..+. +.....+++|-|=|.|-
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~-l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE----CMVP-VVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH----HHHH-HTTTBSEEEEEECTTSC
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH----HHHH-HHhcCCeEEEecccccC
Confidence 42 23556689999999997765432 1222 22345688888988764
No 143
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.50 E-value=0.01 Score=74.32 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc-CCCCcEEEEeCCccHH-HHHHHHHHHcCCCcE-
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK-KVNGPFLIIVPLSTLS-NWSLEFERWAPSVNV- 634 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~-~~~~p~LIV~P~sll~-qW~~E~~k~~p~~~v- 634 (1331)
-+.|..++..++. +...++....|+|||.++..++..+.... .....+++++|+.... +....+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999987763 56678899999999988777777765432 2234689999997664 333333332111100
Q ss_pred -EEecCChhHHHHHHHHhhccCcc-EEEeeHH--HHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 635 -VAYKGSPHLRKTLQAQMKASKFN-VLLTTYE--YVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 635 -~~~~g~~~~r~~~~~~~~~~~~~-VvItTye--~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
....+... .....+ ++-.+.. .+.... .....+++||||||+.+.. ..+...+..+ ....++
T Consensus 227 ~~~~~~~~~---------~~~Tih~ll~~~~~~~~~~~~~--~~~l~~d~lIIDEAsml~~--~~~~~Ll~~l-~~~~~l 292 (608)
T 1w36_D 227 DEQKKRIPE---------DASTLHRLLGAQPGSQRLRHHA--GNPLHLDVLVVDEASMIDL--PMMSRLIDAL-PDHARV 292 (608)
T ss_dssp SCCCCSCSC---------CCBTTTSCC-----------CT--TSCCSCSEEEECSGGGCBH--HHHHHHHHTC-CTTCEE
T ss_pred HHHHhccch---------hhhhhHhhhccCCCchHHHhcc--CCCCCCCEEEEechhhCCH--HHHHHHHHhC-CCCCEE
Confidence 00000000 000000 0000110 011111 1123689999999995542 2233344433 566789
Q ss_pred eeccCCCCCCh
Q psy1544 711 LLTGTPLQNKL 721 (1331)
Q Consensus 711 lLTgTPlqN~l 721 (1331)
+|.|-+.|...
T Consensus 293 iLvGD~~QL~~ 303 (608)
T 1w36_D 293 IFLGDRDQLAS 303 (608)
T ss_dssp EEEECTTSGGG
T ss_pred EEEcchhhcCC
Confidence 99998876543
No 144
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.32 E-value=0.19 Score=63.37 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK-VNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~-~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
..|-+.|.++|.. .....++-...|+|||.+.+.-+.+++...+ ....+|+|+++... .+....+.+..
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999961 2344566677999999999999999987643 23469999998655 55555565543
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.14 E-value=0.01 Score=62.42 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~ 615 (1331)
.++.-+||+|||..++.++..+...+ ..++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeec
Confidence 46788899999999888887765443 458888876
No 146
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.94 E-value=0.076 Score=62.19 Aligned_cols=157 Identities=11% Similarity=0.113 Sum_probs=86.8
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHc--
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWA-- 629 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~-- 629 (1331)
....|.|||...+..+.. ....++.-.=+.|||..+.+++.+..... ....+++++|+.-. ..+...+..++
T Consensus 160 ~p~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp EECCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 345899999998886632 33467777789999998777776654442 33468999998533 33445555543
Q ss_pred -CC-CcEEEecCChhHHHHHHHHhhc-cCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc-
Q psy1544 630 -PS-VNVVAYKGSPHLRKTLQAQMKA-SKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV- 705 (1331)
Q Consensus 630 -p~-~~v~~~~g~~~~r~~~~~~~~~-~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~- 705 (1331)
|. +...+...+.. .+.. .+..+.+.+- +.+.+.....+++|+||+|.+++.. .++.++.....
T Consensus 235 ~P~ll~~~~~~~~~~-------~I~f~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls~ 301 (385)
T 2o0j_A 235 LPDFLQPGIVEWNKG-------SIELDNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISS 301 (385)
T ss_dssp SCTTTSCCEEEECSS-------EEEETTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHHS
T ss_pred ChHhhhhhhccCCcc-------EEEeCCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCCH-HHHHHHHHHhhc
Confidence 32 11000000000 0000 1111211111 2223445567999999999998732 33444433322
Q ss_pred -CCceeeeccCCCCCChHHHHHHHh
Q psy1544 706 -APHRLLLTGTPLQNKLPELWALLN 729 (1331)
Q Consensus 706 -~~~rllLTgTPlqN~l~EL~~ll~ 729 (1331)
...++++++||-..+ -+|.+..
T Consensus 302 ~~~~kiiiiSTP~g~n--~fy~l~~ 324 (385)
T 2o0j_A 302 GRRSKIIITTTPNGLN--HFYDIWT 324 (385)
T ss_dssp TTCCEEEEEECCCSSS--HHHHHHH
T ss_pred CCCCcEEEEeCCCCch--hHHHHHH
Confidence 346788889986553 4454443
No 147
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.47 E-value=0.12 Score=64.59 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=84.3
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCC
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPS 631 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~ 631 (1331)
....|.|||...+..+. .....++.-.=|.|||..+.+++.+.+...+ ...+++++++.-. ..+...+..++-.
T Consensus 160 ~~~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp BBCCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 34579999999888662 2344677778999999987766666555433 3468999998433 4444566655422
Q ss_pred Cc----EEEecCChhHHHHHHHHhhc-cCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhcc-
Q psy1544 632 VN----VVAYKGSPHLRKTLQAQMKA-SKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYV- 705 (1331)
Q Consensus 632 ~~----v~~~~g~~~~r~~~~~~~~~-~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~- 705 (1331)
.. ......+.. .+.. .+..+.+.+ .+...+.....+++|+||+|.+++.. .++.++.....
T Consensus 235 ~p~~~~~~~~~~~~~-------~i~~~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~ 301 (592)
T 3cpe_A 235 LPDFLQPGIVEWNKG-------SIELDNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISS 301 (592)
T ss_dssp SCTTTSCCEEEECSS-------EEEETTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSS
T ss_pred ChHhhccccccCCcc-------EEEecCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhcc
Confidence 11 000000000 0000 111111111 11222344567999999999998742 44444443333
Q ss_pred -CCceeeeccCCCCC
Q psy1544 706 -APHRLLLTGTPLQN 719 (1331)
Q Consensus 706 -~~~rllLTgTPlqN 719 (1331)
...++++++||-..
T Consensus 302 ~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 302 GRRSKIIITTTPNGL 316 (592)
T ss_dssp SSCCEEEEEECCCTT
T ss_pred CCCceEEEEeCCCCc
Confidence 24678899999554
No 148
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.14 E-value=0.042 Score=57.99 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=27.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~ 615 (1331)
.++.-+||+|||..++.++..+...+ ..++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEec
Confidence 36788899999999988887775443 458898876
No 149
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.98 E-value=0.071 Score=56.98 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=27.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
++.-+||+|||..++.++..+...+ ..+||+.|..
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEecc
Confidence 4688999999999998887775543 4589998864
No 150
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.97 E-value=0.11 Score=59.40 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=56.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccC
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASK 655 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~ 655 (1331)
.+.+|..+.|+|||..+-+++..+... ..+++.|........+...+... .
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~-----------~--------------- 88 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG-----------T--------------- 88 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT-----------C---------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC-----------c---------------
Confidence 456899999999999888887776544 34455554333333333222210 0
Q ss_pred ccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc---chHHHHHHHHhccCCceeeeccC
Q psy1544 656 FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 656 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~~~~~~rllLTgT 715 (1331)
...+... + ...++|||||+|.+... ...+...+........++++|+|
T Consensus 89 -------~~~~~~~---~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 89 -------INEFRNM---Y--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------HHHHHHH---H--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------HHHHHHH---h--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0000000 0 12579999999998752 23344455444445567888887
No 151
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.74 E-value=0.04 Score=59.65 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
+.-.++.-+||+|||..++.++..+...+ ..++|+.|.-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEecc
Confidence 33347789999999999998888776543 3478887653
No 152
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.46 E-value=0.13 Score=55.61 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=26.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
++..+||+|||..++..+..+... +..++|+-|..
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecC
Confidence 677889999999888887766443 34588888763
No 153
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.38 E-value=0.18 Score=57.97 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCc---eEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLN---GILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~---gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
++|+|.+.+..+...+.++.. .+|..+.|+|||..+..++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 679999999888877665542 5889999999999999998887654
No 154
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.98 E-value=0.082 Score=62.75 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=67.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCc
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKF 656 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~ 656 (1331)
.++....|+|||.....++. ..+.|||+|+..+ ..|.+.+.+.. .. ..-
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~------------~~~ 213 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------II------------VAT 213 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------CC------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc------------ccc
Confidence 36778899999986655442 1457999999655 77887774321 00 011
Q ss_pred cEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCC
Q psy1544 657 NVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQN 719 (1331)
Q Consensus 657 ~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN 719 (1331)
++-+.|++.+...........+++||||||-.+-. .. ..++..+.+. .+++|.|=|-|-
T Consensus 214 ~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~--~~-l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHT--GC-VNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCH--HH-HHHHHHHTTC-SEEEEEECTTSC
T ss_pred cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCH--HH-HHHHHHhCCC-CEEEEecCcccc
Confidence 23366777766554443334589999999986522 22 2233233344 889999988664
No 155
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.48 E-value=0.57 Score=48.31 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhc-----CCCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 559 EYQIKGLEWMVSLFN-----NNLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~-----~~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.|..++..+..... .+.+.+|.-+.|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467788877765542 345568889999999998888777665
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.40 E-value=0.69 Score=48.62 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=20.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
+.+|..+.|+|||..+-.++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4789999999999988877776643
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.33 E-value=0.14 Score=55.04 Aligned_cols=29 Identities=17% Similarity=-0.092 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
.+.+.+|..+.|+|||..+-+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34566899999999999888887766543
No 158
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.45 Score=55.74 Aligned_cols=48 Identities=21% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
...|.+|..+.|+|||+.|-+++..+ ..+++.|....++..|..|-++
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchHHH
Confidence 35677999999999999998888765 4567777777777777654433
No 159
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.14 E-value=0.11 Score=58.67 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=26.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCC-CCcEEEEeC
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKV-NGPFLIIVP 614 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~-~~p~LIV~P 614 (1331)
+.+|..+.|+|||..|-+++..+...... .++++.|.+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 46899999999999998888877654332 234554443
No 160
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.03 E-value=0.44 Score=57.02 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=56.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccC
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASK 655 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~ 655 (1331)
.+.+|..+.|+|||..+-++...+..... ..+++.|........+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCC-SSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 45689999999999988887777655432 23344443333222222222110
Q ss_pred ccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc---chHHHHHHHHhccCCceeeeccC
Q psy1544 656 FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH---HCKLTHILNTFYVAPHRLLLTGT 715 (1331)
Q Consensus 656 ~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~---~sk~~~~l~~~~~~~~rllLTgT 715 (1331)
....+.... ....++|||||+|.+... ...+...+..+......+++|++
T Consensus 183 ------~~~~~~~~~----~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 ------KLNEFREKY----RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp ------CHHHHHHHH----TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred ------cHHHHHHHh----cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 000111000 014689999999999753 23345555554445556777655
No 161
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.55 E-value=0.4 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.+.+|.-+.|+|||..+.+++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56788999999999998888776653
No 162
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.43 E-value=0.41 Score=50.28 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~ 615 (1331)
++.-+||+|||...+-.+..+...+ ..++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 6788999999977777666665443 458888876
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=0.38 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.456 Sum_probs=20.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.+|..+.|+|||..+-+++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 478899999999999888877664
No 164
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.79 E-value=0.94 Score=48.18 Aligned_cols=43 Identities=23% Similarity=0.128 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+...++.+...+..-......+|.-+.|+|||..+-.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444555544443221122468899999999988877766554
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.71 E-value=0.18 Score=56.36 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=25.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST 617 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl 617 (1331)
...+.+|..+.|+|||..+-+++..+ ..+++.|....+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~ 87 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSEL 87 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHH
Confidence 45567899999999999887776543 344555544333
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.69 E-value=0.28 Score=57.68 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
..+.+|.-+.|+|||..|-+++..+ ..+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 3567899999999999887775542 3556666666655544
No 167
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.57 E-value=0.47 Score=48.51 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
..+.+|.-+.|+|||..+-.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999988888776644
No 168
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.36 E-value=0.15 Score=50.77 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=18.8
Q ss_pred cCCCceEEecCCCCCHHHHHHHHH
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALI 596 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li 596 (1331)
....+.+|.-+.|+|||..|-++.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCCcEEEECCCCccHHHHHHHHH
Confidence 456678999999999998765543
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.16 E-value=0.74 Score=52.31 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=25.1
Q ss_pred CccEEEEeCCcccC-Cc-chHHHHHHHHhccCCceeeeccCCCC
Q psy1544 677 HWKYMIIDEGHRMK-NH-HCKLTHILNTFYVAPHRLLLTGTPLQ 718 (1331)
Q Consensus 677 ~~~~vIiDEaHrik-n~-~sk~~~~l~~~~~~~~rllLTgTPlq 718 (1331)
...+|||||+|.+. .. ...+...+... ....++++|++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~-~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAY-SSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHH-GGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhC-CCCcEEEEEeCCcc
Confidence 56899999999995 22 22333334332 34556777776543
No 170
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.14 E-value=0.7 Score=52.37 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCC--ceEEecCCCCCHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLFNNNL--NGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 561 Q~~gv~~l~~~~~~~~--~gILADemGlGKTi~ai~li~~ 598 (1331)
|.+++..+.....++. ..|+..+.|+|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444555554444443 4588999999999888777764
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.94 E-value=1.1 Score=50.85 Aligned_cols=46 Identities=7% Similarity=-0.091 Sum_probs=30.5
Q ss_pred cHHHHHHHH-HHHHHhc--CCCceEEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 558 KEYQIKGLE-WMVSLFN--NNLNGILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 558 rpyQ~~gv~-~l~~~~~--~~~~gILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|+-|...+. ++..... .+.+.+|.-++|+|||.++-.++..+....
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 444555554 3333332 333457899999999999999988886543
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.84 E-value=0.71 Score=47.23 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.+.+|..+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999998888777654
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.77 E-value=0.44 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
.+.+|..+.|+|||..+-+++..+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44789999999999988888777653
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.50 E-value=0.24 Score=57.51 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=20.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l 599 (1331)
.+.+|.-+.|+|||..|-+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 456899999999999988887765
No 175
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.24 E-value=0.26 Score=49.14 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=20.1
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALI 596 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li 596 (1331)
...+.+.+|.-+.|+|||..|-++.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHH
Confidence 4566788999999999998876554
No 176
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.24 E-value=0.24 Score=56.57 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=25.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLS 619 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~ 619 (1331)
.+.+|.-+.|+|||..|-+++..+ ..+++.|....+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVS 89 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhh
Confidence 456899999999999888776654 34455554433333
No 177
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=90.09 E-value=0.11 Score=46.49 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=41.6
Q ss_pred ccccccccccccchhhcccccccCCCCchhhHhhhhhhhcCCCCccc
Q psy1544 442 QDETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVV 488 (1331)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1331)
.|..+...|..|.|.+.++|..+.|.+||....|..||..+|+|++.
T Consensus 8 lD~~sL~geeRVpVIn~~tGk~L~G~~AP~l~~L~~WL~~nP~y~v~ 54 (87)
T 2v0f_A 8 LDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVA 54 (87)
T ss_dssp SCGGGTTTTSBCCEEESSSCCEECSSSSCBGGGHHHHHHHCTTEEEC
T ss_pred cCccccCCcceeeeEecCCcCcccCCcCchhHHHHHHHHHCCCceec
Confidence 34555667889999999999999999999999999999999999765
No 178
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.06 E-value=1.1 Score=53.20 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=33.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
...|.||.-+.|+|||+.|-+++..+ ..+++.|....++..|..+-
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCSSSHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhcccCCHH
Confidence 35567899999999999988888765 34577777777666664443
No 179
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.89 E-value=0.75 Score=50.63 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=20.2
Q ss_pred hcCCCceEEecCCCCCHHHHHHHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQTIALIT 597 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~ai~li~ 597 (1331)
...+.+.+|.-++|+|||..|-++..
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 44567789999999999987766544
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.75 E-value=1.3 Score=48.23 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=25.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST 617 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl 617 (1331)
..+.+|.-+.|+|||..+-+++..+ ..+++.|....+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 3456889999999999887776654 344565555444
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.64 E-value=0.51 Score=53.91 Aligned_cols=39 Identities=26% Similarity=0.207 Sum_probs=27.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLS 619 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~ 619 (1331)
.+.+|.-+.|+|||..|-+++..+ ...+++.|....++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVS 84 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHHh
Confidence 456899999999999888777654 133455555555443
No 182
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.61 E-value=1.1 Score=47.67 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
++.-+||+|||..++..+..+...+ ..++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEecc
Confidence 6778899999988877776554442 4488888853
No 183
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.05 E-value=1.3 Score=52.63 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLE 624 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E 624 (1331)
..|.||.-+.|+|||+.|-+++..+ +.+++.|....++..|..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhccccchH
Confidence 4567899999999999998888765 3457777766666665444
No 184
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.90 E-value=0.29 Score=51.92 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q psy1544 578 GILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l 599 (1331)
.++...+|+|||..|+.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4677889999999987766543
No 185
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.83 E-value=1.2 Score=51.56 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
...+.+|..+.|+|||..+-.++..+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34456899999999999888877766443
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.66 E-value=3.5 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=18.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l 599 (1331)
..+|..+.|+|||..+-.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56889999999998887766554
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.63 E-value=1.3 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.+.+|..++|+|||..+.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999998888776
No 188
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.30 E-value=1.2 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=20.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|.-++|+|||..+-+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999887776655
No 189
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.05 E-value=1.6 Score=43.65 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=20.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
.+...+|.-+.|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355567889999999988777766554
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.94 E-value=0.6 Score=55.88 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=25.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
.+.+|.-+.|+|||..|-+++..+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999999887777654 13445555555555444
No 191
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.77 E-value=1.9 Score=50.88 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFE 626 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~ 626 (1331)
..|.||.-+.|+|||+.|-+++..+ ..+++.|....++..|..+-+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSSSSHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhccCchHH
Confidence 4567899999999999998888765 456777777777766654443
No 192
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.31 E-value=3.3 Score=47.59 Aligned_cols=42 Identities=24% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 559 EYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 559 pyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.....+...+..-......+|..+.|+|||..+-.++..+.
T Consensus 22 ~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444444443211122358999999999998887776653
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.18 E-value=0.93 Score=52.41 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHhcCCC----ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 558 KEYQIKGLEWMVSLFNNNL----NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~----~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
.+..+..+.++...+..+. +.+|.-+.|+|||..+-+++..+. ...+++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccc
Confidence 3455666666665554433 568999999999999888877662 2234555543
No 194
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.13 E-value=1 Score=50.85 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
+.+|..+.|+|||..+-.++..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3789999999999988888777643
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.99 E-value=0.63 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=20.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l 599 (1331)
.+.+.+|.-+.|+|||..+-+++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 44567899999999999887776543
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.89 E-value=2.7 Score=50.10 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 564 GLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 564 gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
++..++.-+..+.-.+|+...|+|||..++.++....... ..+++++.-..-..++...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSCHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHH
Confidence 4555553344455569999999999999988887765432 35689888765555555554
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.75 E-value=0.9 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=19.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~ 598 (1331)
...+.+|.-+.|+|||..|-++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3456789999999999988776544
No 198
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.51 E-value=1.6 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q psy1544 578 GILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~ 600 (1331)
.+|..+.|+|||..+-+++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 68899999999999888877764
No 199
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.30 E-value=1 Score=53.47 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
..|.||..+.|+|||+.|-+++..+ ..+++.|....++..|..+-
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccchH
Confidence 4567899999999999988888765 45677777777766665443
No 200
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.28 E-value=0.9 Score=52.75 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHH-hcC--CCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 558 KEYQIKGLEWMVSL-FNN--NLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~-~~~--~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
++.+++.+..++.. ... ....+|.-+.|+|||..+-.++..+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34455555433332 222 3346889999999999988887776544
No 201
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.08 E-value=0.79 Score=51.57 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=25.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST 617 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl 617 (1331)
.+.+|.-+.|+|||..|-+++..+ ..+++.|....+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l 72 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGEL 72 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHh
Confidence 455788999999999988887776 344555554333
No 202
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.69 E-value=3 Score=49.91 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH
Q psy1544 564 GLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLE 624 (1331)
Q Consensus 564 gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E 624 (1331)
++..++.-+..+.-.+|+...|+|||..++.++..+.... ..+++++.-.-...++...
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHH
Confidence 5566654455555679999999999999888887765432 3468888866444454444
No 203
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.62 E-value=3.1 Score=44.68 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=30.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEE-Ee-CCccHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLI-IV-PLSTLSNWS 622 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LI-V~-P~sll~qW~ 622 (1331)
.+.++....|.|||..++.++..+...+ .. ++| .+ |-.-...|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G--~~-V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG--VR-VMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--CC-EEEEECCCTTCHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC--CC-EEEEEeCCCCChhHHH
Confidence 4568889999999999999999887653 22 433 33 434445554
No 204
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.61 E-value=0.77 Score=53.23 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLS 619 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~ 619 (1331)
..+.+|.-+.|+|||..|-+++..+ ..+++.|....++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLTS 155 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhhc
Confidence 4556899999999999887776543 34455555444433
No 205
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.51 E-value=2.1 Score=48.40 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=26.4
Q ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS 616 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s 616 (1331)
....+.+|.-++|+|||..|-++.... ....+|++.|-...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCAA 63 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCCC
Confidence 456678999999999998776654432 12345555554333
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.26 E-value=2.7 Score=47.05 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=23.8
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
..+|.-+.|+|||..|-++...+... .++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEee
Confidence 46889999999999887777665332 34455443
No 207
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.30 E-value=3.5 Score=49.67 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=59.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC-----------hhH-
Q psy1544 577 NGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS-----------PHL- 643 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~-----------~~~- 643 (1331)
...|..-+|+|||+.+..++.. ..+|+|||||.... .+|..+|..|+|.. |..|-.. .+.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467778999999987776643 25689999999666 89999999998764 5544332 111
Q ss_pred --HHHHHHHhhccCccEEEeeHHHHHhccC
Q psy1544 644 --RKTLQAQMKASKFNVLLTTYEYVIKDKG 671 (1331)
Q Consensus 644 --r~~~~~~~~~~~~~VvItTye~l~~~~~ 671 (1331)
|-.....+......|||+|...+.....
T Consensus 89 ~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~ 118 (483)
T 3hjh_A 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 (483)
T ss_dssp HHHHHHHHHGGGCCSSEEEEEHHHHHBCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEEHHHHhhcCC
Confidence 1111222334556799999998876544
No 208
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.15 E-value=2.7 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l 599 (1331)
...+|..+.|+|||..|-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999888777655
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.94 E-value=1.4 Score=52.11 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=32.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSL 623 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~ 623 (1331)
..|.+|..+.|+|||..|-+++..+ +.+++.|....++..|..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhccccc
Confidence 4567899999999999998888765 355777766666655543
No 210
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.74 E-value=1.9 Score=53.81 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=23.2
Q ss_pred HHHHhcCCCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 568 MVSLFNNNLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 568 l~~~~~~~~~gILADemGlGKTi~ai~li~~l 599 (1331)
+......+...+|.-+.|+|||..+-++...+
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 33334467788999999999998876665543
No 211
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.71 E-value=1.3 Score=51.42 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
..+.+|.-++|+|||..|-++...+ ..+++.+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEech
Confidence 4567899999999999887776654 345555543
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.65 E-value=2.3 Score=49.06 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=21.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHh
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEK 602 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~ 602 (1331)
+...+|..+.|+|||..+-.++..+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3456889999999999887777666543
No 213
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.12 E-value=0.66 Score=52.24 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=20.3
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.+|..+.|+|||..+-.++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478999999999998888877764
No 214
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.08 E-value=4.5 Score=48.20 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
.++..++.-+..+.-.||+...|+|||..++.++...... +.++|++.----..++...+
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHH
Confidence 3455555434445556999999999999999988877654 45788888654444444443
No 215
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.76 E-value=4.5 Score=46.23 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHh-cCC--CceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 561 QIKGLEWMVSLF-NNN--LNGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 561 Q~~gv~~l~~~~-~~~--~~gILADemGlGKTi~ai~li~~l~ 600 (1331)
|...+..+.... ..+ .+.+|..+.|+|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 344455554444 322 2368899999999988777766553
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.39 E-value=4.5 Score=42.52 Aligned_cols=54 Identities=9% Similarity=-0.013 Sum_probs=33.2
Q ss_pred HHHHHHH-HhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCc--cHHHHHH
Q psy1544 564 GLEWMVS-LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLS--TLSNWSL 623 (1331)
Q Consensus 564 gv~~l~~-~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~s--ll~qW~~ 623 (1331)
++..++. -+..+.-.+|+-+.|+|||..+..++. . ..+++++|.-.. ....|..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEECCCCCCHHHHHH
Confidence 4454443 233444458889999999988877766 1 234577777544 3345544
No 217
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.60 E-value=1.2 Score=49.86 Aligned_cols=25 Identities=28% Similarity=0.166 Sum_probs=19.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|..+.|+|||..+-+++..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4566899999999999887776543
No 218
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.55 E-value=2.6 Score=46.41 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=18.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~ 598 (1331)
.+.+|.-++|+|||..|-+++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34688999999999988877765
No 219
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.19 E-value=4.2 Score=46.55 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
..+..++.-+..+.-.||+...|+|||..++.++..+.. ...+++++.----..+....+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHH
Confidence 345555533444444689999999999999888877655 346789988765555544444
No 220
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.00 E-value=4.3 Score=48.13 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=23.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
.+++-..|+|||.++..++.++... .+.+++|+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 3677889999999988888777543 23465555
No 221
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=79.96 E-value=2.6 Score=53.24 Aligned_cols=68 Identities=13% Similarity=0.039 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCccH-HHHHHHHHHHc
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK-VNGPFLIIVPLSTL-SNWSLEFERWA 629 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~-~~~p~LIV~P~sll-~qW~~E~~k~~ 629 (1331)
.|.+-|.++|.. .....++....|+|||.+.+.-+.+++...+ ....+|+|+.+... ......+....
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478899999973 2345567788999999999998888887633 33459999988655 55555666554
No 222
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.92 E-value=9.1 Score=43.38 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~ 598 (1331)
.+.+|.-+.|+|||..|-++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46789999999999988777544
No 223
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.32 E-value=2.7 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=18.3
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l 599 (1331)
+.||.-+.|+|||..+-.+...+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 56899999999998876665543
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.12 E-value=3.5 Score=49.54 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=23.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
.+.+|.-++|+|||..+-+++..+ ..|++.|..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~ 82 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA------NVPFFHISG 82 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCH
Confidence 457899999999999887776543 345555543
No 225
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.03 E-value=6.2 Score=45.97 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHH-HHh-c----CCCceEE--ecCCCCCHHHHHHHHHHHHHH
Q psy1544 558 KEYQIKGLEWMV-SLF-N----NNLNGIL--ADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 558 rpyQ~~gv~~l~-~~~-~----~~~~gIL--ADemGlGKTi~ai~li~~l~~ 601 (1331)
|+.+++.+..++ ... . .....+| ..+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 455666565444 322 1 2334567 789999999988777766544
No 226
>2cka_A Chromodomain-helicase-DNA-binding protein 8; BRK domain, transcription elongation, chromatin remodeling, protein-protein interaction, transcription; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=78.98 E-value=0.71 Score=42.04 Aligned_cols=40 Identities=40% Similarity=0.681 Sum_probs=36.4
Q ss_pred cccccchhhcccccccCCCCchhhHhhhhhhhcCCCCccc
Q psy1544 449 TDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVV 488 (1331)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1331)
.|..|.|.+..+|..+.|++||...+|..||..+|+|.+.
T Consensus 42 ~E~rVpVv~~~tG~~l~G~~Ap~~K~L~~WLk~np~y~vd 81 (95)
T 2cka_A 42 LETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVD 81 (95)
T ss_dssp SSSBCCEEETTTCCEECTTSSCBHHHHHHHHHHCTTEEEC
T ss_pred CCcccceeeCCCCccccCCCCchHhHHHHHHHHCCCCEeC
Confidence 5778889999999999999999999999999999999653
No 227
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=78.72 E-value=7 Score=40.96 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc-HHHHHHHHHHHcCCCcEEEecC----ChhHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST-LSNWSLEFERWAPSVNVVAYKG----SPHLRKTLQA 649 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl-l~qW~~E~~k~~p~~~v~~~~g----~~~~r~~~~~ 649 (1331)
....++....|.|||-.|++++......+ .+|+||-=..- ...=...+-.-++ +.+..+.- ....+.....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPHG-VEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhCC-cEEEEcccccccCCCCcHHHHH
Confidence 34567888899999999999988776553 35777742211 1111111111111 22221111 1111100000
Q ss_pred HhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC----cchHHHHHHHHhccCCceeeeccCCCCCChHHHH
Q psy1544 650 QMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN----HHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELW 725 (1331)
Q Consensus 650 ~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn----~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~ 725 (1331)
.. -..+..-...+..-.+|+||+||.-..-+ ....+...+... ....-++|||- +-..+|.
T Consensus 104 ~a-----------~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr---~ap~~l~ 168 (196)
T 1g5t_A 104 AC-----------MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGR---GCHRDIL 168 (196)
T ss_dssp HH-----------HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECS---SCCHHHH
T ss_pred HH-----------HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECC---CCcHHHH
Confidence 00 11111222334445799999999854311 112344444332 23456899994 5566777
Q ss_pred HHHhhh
Q psy1544 726 ALLNFL 731 (1331)
Q Consensus 726 ~ll~fL 731 (1331)
.+.+++
T Consensus 169 e~AD~V 174 (196)
T 1g5t_A 169 DLADTV 174 (196)
T ss_dssp HHCSEE
T ss_pred HhCcce
Confidence 666655
No 228
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=78.31 E-value=4.3 Score=51.88 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=70.0
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHH----HhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEE
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYF----SYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFV 955 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L----~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~L 955 (1331)
.|||.....-.+-.....|.++||.+.....+..+...+ ...|+++..++|+++..+|...+..+..+ .+.|++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g--~~~IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG--QIDVVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS--CCCEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC--CCCEEE
Confidence 478877665555444556789999999987766555544 44489999999999999999999998753 344544
Q ss_pred eeccccccccCCCCCCEEEEeCCC
Q psy1544 956 LSTRAGGLGLNLQTADTVIIFDSD 979 (1331)
Q Consensus 956 lST~aggeGLNL~~ad~VI~~D~~ 979 (1331)
.+.......+++...+.||+=+.+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCC
T ss_pred ECHHHHhhhhhccCCceEEecccc
Confidence 444444456788888888875443
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=78.10 E-value=5.9 Score=46.99 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=34.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCcEEEe
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNVVAY 637 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~v~~~ 637 (1331)
.+++-..|+|||.++..++.++... ...+++|+--.-...-...+..|+....+-+|
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 3677789999999999998887643 23466666332222333455555543333333
No 230
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.50 E-value=4.4 Score=46.95 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=20.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|..++|+|||..|-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999887776654
No 231
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=76.67 E-value=0.64 Score=41.32 Aligned_cols=41 Identities=39% Similarity=0.632 Sum_probs=37.0
Q ss_pred ccccccchhhcccccccCCCCchhhHhhhhhhhcCCCCccc
Q psy1544 448 LTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVV 488 (1331)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1331)
..|..|.|.+..+|..+.|++||....|..||..+|+|++.
T Consensus 15 ~~EerVpVi~~~tG~~l~G~~AP~~k~L~~WLk~nP~y~vd 55 (83)
T 2dl6_A 15 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVD 55 (83)
T ss_dssp CTTSBCCEECSSSCCEECGGGSCBSTTHHHHHHHCTTSCBC
T ss_pred CCCcceeeEeCCCCccccCCCchhHhHHHHHHhHCCCCEeC
Confidence 46778889999999999999999999999999999999764
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.53 E-value=7.2 Score=44.12 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
.++..++.-+..+.-.+|+...|+|||..++.++......+ .++|+++---...+....+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESSSCHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECCCCHHHHHHHHHH
Confidence 45555553344455579999999999998888877665432 578999876555555554443
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.39 E-value=6.8 Score=50.88 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 345789999999999988888777654
No 234
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.93 E-value=15 Score=42.42 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=38.6
Q ss_pred HHHHHHH--HhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHH
Q psy1544 564 GLEWMVS--LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWS 622 (1331)
Q Consensus 564 gv~~l~~--~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~ 622 (1331)
++..++. -+..+.-.+|+.+.|+|||..++.++..+... .+++++|.......+|.
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHH
Confidence 4454442 22334446889999999999999988877543 35688888777666663
No 235
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.90 E-value=7.2 Score=49.83 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3455689999999999998888776644
No 236
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=72.44 E-value=10 Score=42.46 Aligned_cols=25 Identities=28% Similarity=0.200 Sum_probs=20.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|.-+.|+|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999887776654
No 237
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=71.15 E-value=5.5 Score=50.66 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=47.6
Q ss_pred CccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEeCCccH-HHHHHHHHHH
Q psy1544 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK-VNGPFLIIVPLSTL-SNWSLEFERW 628 (1331)
Q Consensus 556 ~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~-~~~p~LIV~P~sll-~qW~~E~~k~ 628 (1331)
.|.+-|.++|.. .....++....|+|||.+.+.-+.+++...+ ....+|+|+.+... ......+...
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 589999999873 2345566677999999999999999987533 33459999888654 3344444443
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=70.93 E-value=16 Score=38.28 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
.+...+|+.+.|+|||..+..++..+... .+.++++.-.....+....+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHHHH
Confidence 34445788899999998887777655433 34577776544443333333
No 239
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=70.85 E-value=10 Score=46.38 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=52.9
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcC-CCCHHHHHHHHHHhcCCCCCceEEEeec--cccccccCCC----
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDG-TTKAEDRGDLLKKFNAPDSEYFIFVLST--RAGGLGLNLQ---- 968 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG-~~~~~eR~~~i~~Fn~~~~~~~v~LlST--~aggeGLNL~---- 968 (1331)
..+.++|||+.+-..++.+.. ..+..+. +.| +++ +..+++.|+... + .+|+++ ....+|||++
T Consensus 391 ~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 391 QAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANN-K--VLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSS-S--CEEEEESSCCSCCSSCCEETTE
T ss_pred hCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcC-C--eEEEEEecceecccccccccCC
Confidence 445689999999888888776 2344433 344 333 566888996322 2 246665 6889999999
Q ss_pred -CCCEEEEeCCCCCc
Q psy1544 969 -TADTVIIFDSDWNP 982 (1331)
Q Consensus 969 -~ad~VI~~D~~wNp 982 (1331)
.+..||+.-.|+-+
T Consensus 461 ~~l~~viI~~lPfp~ 475 (551)
T 3crv_A 461 SLISDVVIVGIPYPP 475 (551)
T ss_dssp ESEEEEEEESCCCCC
T ss_pred cceeEEEEEcCCCCC
Confidence 38899999887743
No 240
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=70.76 E-value=8.2 Score=48.08 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=65.2
Q ss_pred cCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHcCCCc
Q psy1544 554 NGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVN 633 (1331)
Q Consensus 554 ~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~ 633 (1331)
.+.+..-|.+++..++.... +. .+|-..=|-|||..+..++..+. +.++|.+|+..-.+-..+|..-
T Consensus 173 ~~~~T~dQ~~al~~~~~~~~-~~-~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~~a~~~l~~~~~~----- 239 (671)
T 2zpa_A 173 TGAPQPEQQQLLKQLMTMPP-GV-AAVTAARGRGKSALAGQLISRIA------GRAIVTAPAKASTDVLAQFAGE----- 239 (671)
T ss_dssp CSSCCHHHHHHHHHHTTCCS-EE-EEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSCCSCHHHHHHHGG-----
T ss_pred CCCCCHHHHHHHHHHHHhhh-Ce-EEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCHHHHHHHHHHhhC-----
Confidence 35678899999987776432 22 35556699999965555555442 2368888884332222222110
Q ss_pred EEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeec
Q psy1544 634 VVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLT 713 (1331)
Q Consensus 634 v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLT 713 (1331)
.+-...++.+... ....++||||||--|--+ .+..+...-.+++||
T Consensus 240 -----------------------~i~~~~Pd~~~~~-----~~~~dlliVDEAAaIp~p------ll~~ll~~~~~v~~~ 285 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLAS-----DEQADWLVVDEAAAIPAP------LLHQLVSRFPRTLLT 285 (671)
T ss_dssp -----------------------GCCBCCHHHHHHS-----CCCCSEEEEETGGGSCHH------HHHHHHTTSSEEEEE
T ss_pred -----------------------CeEEeCchhhhhC-----cccCCEEEEEchhcCCHH------HHHHHHhhCCeEEEE
Confidence 0111122222211 124799999999876322 233333344589999
Q ss_pred cCC
Q psy1544 714 GTP 716 (1331)
Q Consensus 714 gTP 716 (1331)
.|-
T Consensus 286 tTv 288 (671)
T 2zpa_A 286 TTV 288 (671)
T ss_dssp EEB
T ss_pred ecC
Confidence 994
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.51 E-value=2.9 Score=53.43 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWS 622 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~ 622 (1331)
..+.+|.-+.|+|||+.|-+++..+ ..+++.|....++..|.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhcccc
Confidence 4567999999999999887777643 34455554445555553
No 242
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=68.69 E-value=11 Score=42.13 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=22.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
.++.-..|+|||..+..++..+.... +..+++|.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~ 141 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFIT 141 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 35566799999998887776665322 22466665
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.84 E-value=9.9 Score=43.68 Aligned_cols=45 Identities=13% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
.+.-.+|+-+.|+|||..++.++..+... .+++++|.-.....++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 34445888999999999998888776543 3568888866555554
No 244
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=67.83 E-value=9.8 Score=44.45 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEe
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY---RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVL 956 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~---~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~Ll 956 (1331)
.+||.....-.+......+.++||.+..+..+..+...|.. .|+++..++|+++..+|...+..+..++ +.|++.
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~ 123 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVF 123 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEE
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEE
Confidence 47887754444334446778999999999998888888877 5889999999999988888888886432 345444
Q ss_pred ecccccc---ccCCCCCCEEEE
Q psy1544 957 STRAGGL---GLNLQTADTVII 975 (1331)
Q Consensus 957 ST~agge---GLNL~~ad~VI~ 975 (1331)
+...... -+++...++||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 4433311 245567777766
No 245
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=66.86 E-value=6.3 Score=44.59 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHH
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALIT 597 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~ 597 (1331)
|+.++..+..++. .+...+|..+.|+|||..+-.++.
T Consensus 17 R~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 17 REEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHHH
Confidence 4555555544443 345668899999999976655544
No 246
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=66.76 E-value=2 Score=37.14 Aligned_cols=39 Identities=38% Similarity=0.705 Sum_probs=33.8
Q ss_pred cccccchhhcccccccCCCCchhhHhhhhhhhcCCCCcc
Q psy1544 449 TDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEV 487 (1331)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1331)
.|..+.|....+|..+.|++||...+|.+||..+|+|.+
T Consensus 23 ~e~pVPViN~~dGtrL~Ge~AP~~KdL~dWLrqhP~y~v 61 (80)
T 2ckc_A 23 PDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 61 (80)
T ss_dssp TTCBCCEEETTTTEEECTTSSCBHHHHHHHHHHCTTEEE
T ss_pred CCCccceeecCCCcccccccCccccCHHHHHHHCCCcEE
Confidence 455677777888888999999999999999999999954
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=66.59 E-value=15 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=18.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~ 598 (1331)
.+.+|.-+.|+|||..+-++...
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999887666544
No 248
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=64.27 E-value=38 Score=34.75 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=58.8
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe--CCccHHHHHHHHHHHcCCCcEEEecCChhHHHHHHHHhhccCccE
Q psy1544 581 ADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV--PLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNV 658 (1331)
Q Consensus 581 ADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~--P~sll~qW~~E~~k~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~V 658 (1331)
.---|.|||.+++.++..+...+ .++|+|= |...+..|... . ...+++
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~~~~~~----~-----------------------~~~~~~ 57 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLTNWSKA----G-----------------------KAAFDV 57 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHTT----S-----------------------CCSSEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHhc----C-----------------------CCCCcE
Confidence 34568999999999998887642 3467765 44555555431 0 011334
Q ss_pred EEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCCCCCChHHHHHHHhhh
Q psy1544 659 LLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFL 731 (1331)
Q Consensus 659 vItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTPlqN~l~EL~~ll~fL 731 (1331)
+-...+.+......+.. .+|+||||=.-.+ + .....++. .+.. +++-.+|-... ..+..++..+
T Consensus 58 ~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~-~--~~~~~~l~---~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 58 FTAASEKDVYGIRKDLA-DYDFAIVDGAGSL-S--VITSAAVM---VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EECCSHHHHHTHHHHTT-TSSEEEEECCSSS-S--HHHHHHHH---HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred EecCcHHHHHHHHHhcC-CCCEEEEECCCCC-C--HHHHHHHH---HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 43333333333333332 5899999966554 2 11122222 2344 33333444444 5666555555
No 249
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.97 E-value=9.2 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLM 600 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~ 600 (1331)
+.+|..++|+|||..|-++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 368999999999999888877663
No 250
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=60.59 E-value=18 Score=48.54 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=68.6
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHH----hcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEE
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFS----YRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFV 955 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~----~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~L 955 (1331)
.+||.......+-.+...|.+++|.+..+..+..+...|. ..++++..++|..+..++...+.....+ .+.|++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g--~~dIvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG--KIDILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT--CCSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC--CCCEEE
Confidence 4788876554444445678899999999987776666555 3378899999999999999999988743 345655
Q ss_pred eeccccccccCCCCCCEEEE
Q psy1544 956 LSTRAGGLGLNLQTADTVII 975 (1331)
Q Consensus 956 lST~aggeGLNL~~ad~VI~ 975 (1331)
.+.......+++...+.||+
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 55555666677777777665
No 251
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=60.57 E-value=33 Score=38.49 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 558 KEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 558 rpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l 599 (1331)
|+.++..+. . +.. ...+|..+.|+|||..+-.++..+
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 444555444 3 333 466788999999998776666543
No 252
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=58.52 E-value=8.9 Score=48.98 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=26.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWS 622 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~ 622 (1331)
.|.+|.-+.|+|||..|=+++..+ ..+++.|....++..|.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLA 279 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSCT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHhhcccc
Confidence 456899999999999887666433 33455554444444443
No 253
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=55.93 E-value=19 Score=47.94 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=70.1
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEe
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSY---RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVL 956 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~---~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~Ll 956 (1331)
.+||..+..-.+......|.++||.+..+..+..+...|.. .|+++..++|+++..+|...+..+..++ +.|++.
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~ 180 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVF 180 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEE
Confidence 47888866555555556788999999999999988888887 5789999999999988888888887533 345444
Q ss_pred ecccccc---ccCCCCCCEEEEeC
Q psy1544 957 STRAGGL---GLNLQTADTVIIFD 977 (1331)
Q Consensus 957 ST~agge---GLNL~~ad~VI~~D 977 (1331)
+....-. -+++...+.||+=+
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEESC
T ss_pred CHHHHHHHHHhhcccCcCEEEEeC
Confidence 4333211 14567788887633
No 254
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.60 E-value=21 Score=41.03 Aligned_cols=42 Identities=17% Similarity=0.033 Sum_probs=31.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL 618 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll 618 (1331)
.+...+|+.+.|+|||..++.++..+... .+++++|.-...+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCc
Confidence 34456889999999999999988877643 3458888875444
No 255
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=54.77 E-value=14 Score=50.04 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=44.2
Q ss_pred ccCCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEeCCccH
Q psy1544 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKK---VNGPFLIIVPLSTL 618 (1331)
Q Consensus 553 ~~~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~---~~~p~LIV~P~sll 618 (1331)
.+.+|.+-|.++|.. .+.+.++...-|+|||.+.+.-+.+++..+. ....+|||+.+...
T Consensus 7 ~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp ---CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 345789999999862 3556688888999999998888888877643 33469999998554
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=52.96 E-value=12 Score=44.62 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=29.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 576 LNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 576 ~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
.+.+|..++|+|||..|-+++..+ +...+++.|....+...|
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l----~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL----GSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH----CTTSCEEEEEGGGGCCSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh----CCCceEEEEeHHHHHHHh
Confidence 467899999999999998888775 212456666554444333
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=51.25 E-value=27 Score=37.15 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
+.-.+|+.+.|+|||..++.++....... ..+++++.-.....+....+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccCCHHHHHHHHHH
Confidence 33458999999999999988876644332 3457777765554554444433
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.21 E-value=23 Score=39.79 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=22.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
++.-..|+|||..+..++..+... .+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 456679999999887777666433 34466655
No 259
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=48.81 E-value=33 Score=41.27 Aligned_cols=60 Identities=3% Similarity=-0.132 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 564 GLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 564 gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
++..++.-+..+.-.+|+...|+|||..++.++..+.... ..++|++.---...+....+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSSCHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccCCHHHHHHHH
Confidence 3444443233444568999999999999988887765431 34688888665555555444
No 260
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=48.12 E-value=18 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=18.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALIT 597 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~ 597 (1331)
.+.+.+|.-+.|+|||..+-++..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 344678999999999987766543
No 261
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=46.05 E-value=56 Score=45.88 Aligned_cols=51 Identities=14% Similarity=0.005 Sum_probs=36.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHHc
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWA 629 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k~~ 629 (1331)
.+.+.+|.-+.|+|||..|++++...... .+.+++|.....+.+-. ..+|.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH--HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH--HHHcC
Confidence 45667999999999999999998866543 34588888776653333 44554
No 262
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=45.79 E-value=20 Score=48.13 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=36.7
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHH
Q psy1544 580 LADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFER 627 (1331)
Q Consensus 580 LADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~~k 627 (1331)
+-...|+|||.+.+.-|.+++..+....++|+|||.....+-...+..
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~ 53 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAK 53 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTC
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHH
Confidence 334489999999999999998876555679999999876664444443
No 263
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=44.64 E-value=21 Score=33.12 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=35.8
Q ss_pred HHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 888 DRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 888 ~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
...+..+ ..+..|||||..-.........|...|+++..++|++.
T Consensus 46 ~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344443 45568999999888888889999999999999999865
No 264
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=44.52 E-value=49 Score=36.79 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
.+.-..|.|||..+..++..+... .+.++++.-
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~ 134 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 345679999999887777666433 345777663
No 265
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=44.01 E-value=26 Score=37.80 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=19.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3456899999999998877776544
No 266
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=43.14 E-value=38 Score=32.69 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=23.3
Q ss_pred ccCccEEEEeCCcccCC-cchHHHHHHHHhccCCceeeeccCC
Q psy1544 675 KLHWKYMIIDEGHRMKN-HHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 675 ~~~~~~vIiDEaHrikn-~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
...+++||+|=. +.+ ....+.+.++........+++|+..
T Consensus 59 ~~~~dlii~d~~--l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 59 AHLPDVALLDYR--MPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHCCSEEEEETT--CSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred hcCCCEEEEeCC--CCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 346899999942 222 2334455555544445678888864
No 267
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=43.11 E-value=94 Score=32.18 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=56.5
Q ss_pred ccchhHHHH-Hhhhhhhc--CCCeeEEEeccHHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCc
Q psy1544 880 VSGKFELLD-RILPKLKS--TGHRVLLFCQMTQLMNILEDYFSYR-----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEY 951 (1331)
Q Consensus 880 ~s~K~~~L~-~lL~~l~~--~g~KVLIFsq~~~~ld~L~~~L~~~-----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~ 951 (1331)
.+||..... -++..+.. .+.++||.+.....+..+.+.+... ++++..++|+.+...+...+..- ..
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-----~~ 135 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN-----CP 135 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS-----CC
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC-----CC
Confidence 377765433 33333322 2348999999998888777666543 78999999999877666555432 12
Q ss_pred eEEEeecc-cc-----ccccCCCCCCEEEEe
Q psy1544 952 FIFVLSTR-AG-----GLGLNLQTADTVIIF 976 (1331)
Q Consensus 952 ~v~LlST~-ag-----geGLNL~~ad~VI~~ 976 (1331)
.| +++|. .. ...+++...++||+=
T Consensus 136 ~i-~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 136 HI-VVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp SE-EEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CE-EEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 34 44553 21 234567777777763
No 268
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=42.74 E-value=22 Score=33.95 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred hHHHHHhhhhhhcCCCeeEEEec-cHHHHHHHHHHHHhcCCeEEEEcCCCCH
Q psy1544 884 FELLDRILPKLKSTGHRVLLFCQ-MTQLMNILEDYFSYRGFKYMRLDGTTKA 934 (1331)
Q Consensus 884 ~~~L~~lL~~l~~~g~KVLIFsq-~~~~ld~L~~~L~~~g~~~~~idG~~~~ 934 (1331)
+..+...+..+...+..|||||. .-.........|...|+++..++|++..
T Consensus 75 ~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 75 LKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 33444444444332278999994 6566778888999999999999998764
No 269
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=42.41 E-value=62 Score=37.70 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=59.2
Q ss_pred ccchhHHHHHhhhhhh-cCCCeeEEEeccHHHHHHHHHHHHhc-CC---eEEEEcCCCCHHHHHHHHHHhcCCCCCceEE
Q psy1544 880 VSGKFELLDRILPKLK-STGHRVLLFCQMTQLMNILEDYFSYR-GF---KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIF 954 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~-~~g~KVLIFsq~~~~ld~L~~~L~~~-g~---~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~ 954 (1331)
.+||......++..+. ..+.++||.+.....+..+...|... |+ .+..++|+....++....... .|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-------~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-------KVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHC-------SEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccCC-------CEE
Confidence 3778776655554433 46779999999988887776666544 66 899999999988776554432 344
Q ss_pred Eeecccccc-----ccCCCCCCEEEE
Q psy1544 955 VLSTRAGGL-----GLNLQTADTVII 975 (1331)
Q Consensus 955 LlST~agge-----GLNL~~ad~VI~ 975 (1331)
+++...... .+++...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 554443321 356677777776
No 270
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=41.68 E-value=69 Score=29.36 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=42.7
Q ss_pred eEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcC
Q psy1544 901 VLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNA 946 (1331)
Q Consensus 901 VLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~ 946 (1331)
.+|||.-...+..|...++..|+.++.+.+......|...+..|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999974
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=41.46 E-value=42 Score=35.48 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=32.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEF 625 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~~E~ 625 (1331)
+.-.+|+.+.|+|||..++.++..+... .++++++.-.....++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHH
Confidence 4445788899999999988887776543 34578877655444444333
No 272
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=41.44 E-value=53 Score=38.74 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=25.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~ 615 (1331)
+++...|+|||.++..++.++.... +.++++|.-.
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd~D 138 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVSAD 138 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 4556799999999999998886541 2346766633
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.28 E-value=13 Score=41.89 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+..+...+..+.+.+|..+.|+|||..+-++...+
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3344444444456788999999999998877766543
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=40.67 E-value=24 Score=37.24 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=19.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l 599 (1331)
+.+++.+.|+|||..|.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45779999999999998888765
No 275
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=40.26 E-value=57 Score=31.33 Aligned_cols=84 Identities=10% Similarity=-0.003 Sum_probs=41.6
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
.+++++......+..+...+........+.+..........+....+++||+|=.- -......+.+.++........++
T Consensus 21 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 21 MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEM-PVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSC-SSSCHHHHHHHHHHTTCSCEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeEEE
Confidence 45566666665555555544433211222222221111222334568999999422 12223345555555544556788
Q ss_pred eccCC
Q psy1544 712 LTGTP 716 (1331)
Q Consensus 712 LTgTP 716 (1331)
+|+..
T Consensus 100 ls~~~ 104 (150)
T 4e7p_A 100 VTTFK 104 (150)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 88865
No 276
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=39.68 E-value=1.1e+02 Score=30.25 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=54.0
Q ss_pred cchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEee
Q psy1544 881 SGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYR---GFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS 957 (1331)
Q Consensus 881 s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~---g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS 957 (1331)
..+..+..+++.+....|.||+|+|.....+..|-+.|=.. .+=.-.+.|.... .... | +|+
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~~------------~~~P--V-~L~ 86 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPR------------GGAP--V-EIA 86 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSST------------TCCS--E-EEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCCC------------CCCC--E-EEe
Confidence 45788899999999999999999999999999998888432 2211223333220 1222 4 555
Q ss_pred ccccccccCCCCCCEEEEeCCCC
Q psy1544 958 TRAGGLGLNLQTADTVIIFDSDW 980 (1331)
Q Consensus 958 T~aggeGLNL~~ad~VI~~D~~w 980 (1331)
+... ..-..++++|+++..+
T Consensus 87 ~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 87 WPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp CTTS---CCCSCCSEEEECCSSC
T ss_pred CCCC---CCCCcCCEEEECCCCC
Confidence 4211 1223578999999876
No 277
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=39.43 E-value=64 Score=36.41 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=31.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN 620 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q 620 (1331)
.+|+-+.|+|||..++.++....... ..+.++.|.....+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhH
Confidence 46889999999999999888776542 2356888887765543
No 278
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=39.42 E-value=59 Score=30.09 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=39.3
Q ss_pred hhhhhhcCCCeeEEEec------cHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHh
Q psy1544 890 ILPKLKSTGHRVLLFCQ------MTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 890 lL~~l~~~g~KVLIFsq------~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~F 944 (1331)
.+..+.. .++|+||+. +...+.....+|...|+.|..++=....+.+..+....
T Consensus 10 ~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~ 69 (109)
T 3ipz_A 10 TLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS 69 (109)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH
Confidence 3334333 358999998 58899999999999999998887655555555555443
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=39.26 E-value=1.4e+02 Score=33.37 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=22.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
.+.-..|.|||.++..++..+... .+.++++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 455679999999888777766543 34577765
No 280
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=38.76 E-value=81 Score=33.12 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=56.0
Q ss_pred ccchhHH-HHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCc
Q psy1544 880 VSGKFEL-LDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSYR-----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEY 951 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~~-----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~ 951 (1331)
.+||... +.-++..+. ..+.++||.+..+..+..+...+... ++++..++|+.+..++...+ + ++
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~~ 143 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----KC 143 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----SC
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----CC
Confidence 4788765 444555443 24568999999998888777776643 78899999999876654433 2 23
Q ss_pred eEEEeecc-cc-----ccccCCCCCCEEEE
Q psy1544 952 FIFVLSTR-AG-----GLGLNLQTADTVII 975 (1331)
Q Consensus 952 ~v~LlST~-ag-----geGLNL~~ad~VI~ 975 (1331)
.| +++|. .. ...+++...+.||+
T Consensus 144 ~I-iv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 144 HI-AVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp SE-EEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CE-EEECHHHHHHHHhcCCcccccCCEEEe
Confidence 34 44443 22 12456666776665
No 281
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=38.70 E-value=1.1e+02 Score=32.54 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=54.7
Q ss_pred ccchhHH-HHHhhhhhhcC--CCeeEEEeccHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q psy1544 880 VSGKFEL-LDRILPKLKST--GHRVLLFCQMTQLMNILEDYFSY----RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYF 952 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~~~--g~KVLIFsq~~~~ld~L~~~L~~----~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~ 952 (1331)
.+||... +.-++..+... +.++||.+..+..+..+...+.. .|+.+..+.|+.+.......+. + +..
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~----~~~ 163 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA--K----KPH 163 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH--T----CCS
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc--C----CCC
Confidence 4778654 33444443332 45799999998877666655543 4899999999988655444332 1 233
Q ss_pred EEEeecc-cc------ccccCCCCCCEEEE
Q psy1544 953 IFVLSTR-AG------GLGLNLQTADTVII 975 (1331)
Q Consensus 953 v~LlST~-ag------geGLNL~~ad~VI~ 975 (1331)
| +++|. .. ..++++...+.||+
T Consensus 164 I-~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 I-IIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp E-EEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred E-EEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 4 45552 11 23567777887776
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=38.34 E-value=62 Score=38.06 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=23.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
+++...|+|||..+..++..+... .+.++++.-
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 455789999999888887776533 345777664
No 283
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.87 E-value=50 Score=43.73 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=64.3
Q ss_pred cccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHH----hcCC----eEEEEcCCCCHHHHHHHHHHhcCCCCC
Q psy1544 879 RVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFS----YRGF----KYMRLDGTTKAEDRGDLLKKFNAPDSE 950 (1331)
Q Consensus 879 ~~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~----~~g~----~~~~idG~~~~~eR~~~i~~Fn~~~~~ 950 (1331)
..|||..++.-++..+...|.++||.+..+..+..+...|. ..|+ .+..++|+++..++...++.+..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----
Confidence 34888876666676666778899999999988776666554 3467 89999999999888888887763
Q ss_pred ceEEEeeccccccccC-CCCCCEEEE
Q psy1544 951 YFIFVLSTRAGGLGLN-LQTADTVII 975 (1331)
Q Consensus 951 ~~v~LlST~aggeGLN-L~~ad~VI~ 975 (1331)
+.|++.+....-.-+. |...++||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 3454444333222222 556666665
No 284
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=37.77 E-value=64 Score=36.96 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=29.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHH
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN 620 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~q 620 (1331)
.+|.-+.|+|||..++.++..+... .+++++|.......+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccch
Confidence 4678889999999988888776543 356888887765543
No 285
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=37.59 E-value=1.2e+02 Score=32.14 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=56.0
Q ss_pred ccchhHH-HHHhhhhhh-------cCCCeeEEEeccHHHHHHHHHHH----HhcCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 880 VSGKFEL-LDRILPKLK-------STGHRVLLFCQMTQLMNILEDYF----SYRGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~-------~~g~KVLIFsq~~~~ld~L~~~L----~~~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
.+||... +.-++..+. ..+.++||.+..+..+..+...+ ...++.+..+.|+.+.......+..
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 151 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER---- 151 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----
Confidence 4778654 444444333 24668999999988766655544 4458999999999987766555543
Q ss_pred CCCceEEEeecc-cc-----ccccCCCCCCEEEE
Q psy1544 948 DSEYFIFVLSTR-AG-----GLGLNLQTADTVII 975 (1331)
Q Consensus 948 ~~~~~v~LlST~-ag-----geGLNL~~ad~VI~ 975 (1331)
++.| +++|. .. ...+++...++||+
T Consensus 152 --~~~I-~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 --GVEI-CIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp --CCSE-EEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred --CCCE-EEECHHHHHHHHHcCCCCcccccEEEE
Confidence 1234 55553 11 12356777887775
No 286
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=37.32 E-value=24 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 577 NGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 577 ~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
..+|.-++|+|||..|-++...+..
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4588999999999988877776643
No 287
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.98 E-value=51 Score=31.30 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=37.4
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC-cchHHHHHHHH--hccCCce
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN-HHCKLTHILNT--FYVAPHR 709 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn-~~sk~~~~l~~--~~~~~~r 709 (1331)
++++.......+..+...+...++.+.+.+..........+....+++||+|=. +.+ ....+.+.++. .......
T Consensus 7 ~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG--LPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT--CGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC--CCCCCHHHHHHHHHhcccccCCCE
Confidence 344444444444444444444444422222222211122233456899999843 222 22334455544 2233456
Q ss_pred eeeccCC
Q psy1544 710 LLLTGTP 716 (1331)
Q Consensus 710 llLTgTP 716 (1331)
+++|+..
T Consensus 85 i~~s~~~ 91 (144)
T 3kht_A 85 VILTDNV 91 (144)
T ss_dssp EEEETTC
T ss_pred EEEeCCC
Confidence 7888753
No 288
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=36.74 E-value=38 Score=40.42 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q psy1544 574 NNLNGILADEMGLGKTIQTIALITYLME 601 (1331)
Q Consensus 574 ~~~~gILADemGlGKTi~ai~li~~l~~ 601 (1331)
...+.+|..+.|+|||..+-+++..+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3446799999999999998888776644
No 289
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=36.72 E-value=89 Score=29.28 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=45.3
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCC---cchHHHHHHHHhccCCc
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKN---HHCKLTHILNTFYVAPH 708 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn---~~sk~~~~l~~~~~~~~ 708 (1331)
.++++.......+..+...+...++.|+.++ ........+....+++||+|=. +.+ ....+.+.++.......
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFA--SAESFMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEES--SHHHHTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC--CHHHHHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhCCCCCC
Confidence 3555666666666665555555556655332 2222334455567999999942 222 23344455555444456
Q ss_pred eeeeccCC
Q psy1544 709 RLLLTGTP 716 (1331)
Q Consensus 709 rllLTgTP 716 (1331)
.+++|+..
T Consensus 83 ii~~s~~~ 90 (136)
T 3kto_A 83 TIVMASSS 90 (136)
T ss_dssp EEEEESSC
T ss_pred EEEEEcCC
Confidence 78888864
No 290
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=36.35 E-value=21 Score=38.67 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|.+-++|.|||+++++++..+...+
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 6678899999999999999887764
No 291
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=35.58 E-value=1.1e+02 Score=34.20 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHHHH-HhcCCCceEEecCCCCCHHHHHHHHHHHHHHh---cCCCCcEEEEeCCcc
Q psy1544 563 KGLEWMVS-LFNNNLNGILADEMGLGKTIQTIALITYLMEK---KKVNGPFLIIVPLST 617 (1331)
Q Consensus 563 ~gv~~l~~-~~~~~~~gILADemGlGKTi~ai~li~~l~~~---~~~~~p~LIV~P~sl 617 (1331)
.++..++. -+..+.-.+|+.+.|+|||..++.++...... ++..+++++|.-...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 44555552 23334446889999999999988887654221 111456888876654
No 292
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=35.53 E-value=26 Score=37.52 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|-+-.+|.|||+++++++..+...+
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 5677899999999999999887764
No 293
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=35.50 E-value=97 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=23.1
Q ss_pred cccCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCC
Q psy1544 674 AKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 674 ~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
....+++||+|=. --......+.+.++........+++|+..
T Consensus 48 ~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 48 GGFTPDLMICDIA-MPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp TTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred hcCCCCEEEEecC-CCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 3446899999832 11122334455555544455678888865
No 294
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=35.47 E-value=57 Score=33.98 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=30.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe--CCccHHHHHHH
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV--PLSTLSNWSLE 624 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~--P~sll~qW~~E 624 (1331)
|...--|.|||.+++.++..+... + ++|+|= |...+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~---g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQ---G-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTT---S-CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhc---C-CEEEEECCCCCCHHHHhcC
Confidence 445567999999999998887654 2 477754 66667777754
No 295
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=35.04 E-value=79 Score=29.44 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=40.7
Q ss_pred CCeeEEEe------ccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEee
Q psy1544 898 GHRVLLFC------QMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS 957 (1331)
Q Consensus 898 g~KVLIFs------q~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS 957 (1331)
.++|+||+ .+...+.....+|...|+.|..++=....+.|..+...-. ...+-++.+.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g--~~tvP~ifi~ 78 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS--WPTYPQLYVS 78 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEEET
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC--CCCCCEEEEC
Confidence 35899999 4777899999999999999988877666665655544333 2334344443
No 296
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=34.16 E-value=81 Score=29.64 Aligned_cols=81 Identities=7% Similarity=0.020 Sum_probs=44.0
Q ss_pred CcEEEecCChhHHHHHHHHhhc-cCccEEEeeHHHHHhccCcccc-cCccEEEEeCCcccC-C-cchHHHHHHHH--hcc
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKA-SKFNVLLTTYEYVIKDKGPLAK-LHWKYMIIDEGHRMK-N-HHCKLTHILNT--FYV 705 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~-~~~~VvItTye~l~~~~~~l~~-~~~~~vIiDEaHrik-n-~~sk~~~~l~~--~~~ 705 (1331)
.++++.......+..+...+.. .++.|+.++- ...-...+.. ..+++||+|= .+. + ....+.+.++. ...
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~--~~~a~~~l~~~~~~dlvi~D~--~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVEN--LKKFYSIFKDLDSITLIIMDI--AFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECS--HHHHHTTTTTCCCCSEEEECS--CSSSHHHHHHHHHHHHHSGGGT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECC--HHHHHHHHhcCCCCcEEEEeC--CCCCCCcHHHHHHHHHhCcccC
Confidence 3455566666555555555544 5566553321 2222233444 6789999993 232 2 23344555555 334
Q ss_pred CCceeeeccCC
Q psy1544 706 APHRLLLTGTP 716 (1331)
Q Consensus 706 ~~~rllLTgTP 716 (1331)
....+++|+..
T Consensus 81 ~~~ii~ls~~~ 91 (140)
T 3lua_A 81 NTPVIIATKSD 91 (140)
T ss_dssp TCCEEEEESCC
T ss_pred CCCEEEEeCCC
Confidence 55678888864
No 297
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=33.58 E-value=1.3e+02 Score=31.57 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=51.6
Q ss_pred ccchhHH-HHHhhhhhh------cCCCeeEEEeccHHHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHhcCCC
Q psy1544 880 VSGKFEL-LDRILPKLK------STGHRVLLFCQMTQLMNILEDYFSYR----GFKYMRLDGTTKAEDRGDLLKKFNAPD 948 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~------~~g~KVLIFsq~~~~ld~L~~~L~~~----g~~~~~idG~~~~~eR~~~i~~Fn~~~ 948 (1331)
.+||... +.-++..+. ..+.++||.+.....+..+...+... ++.+..++|+.+.......+ +
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--- 145 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N--- 145 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T---
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C---
Confidence 4778764 222333322 35678999999988877777666543 58899999988765544333 2
Q ss_pred CCceEEEeecccc------ccccCCCCCCEEEE
Q psy1544 949 SEYFIFVLSTRAG------GLGLNLQTADTVII 975 (1331)
Q Consensus 949 ~~~~v~LlST~ag------geGLNL~~ad~VI~ 975 (1331)
+..|++.+.... +..+++...++||+
T Consensus 146 -~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 -NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp -TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 233444443222 12356667776665
No 298
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=33.19 E-value=25 Score=38.28 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKK 603 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~ 603 (1331)
|.+-++|.|||+++++++..+...+
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 6678899999999999999887764
No 299
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=33.10 E-value=82 Score=32.92 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=51.2
Q ss_pred ccchhHH-HHHhhhhhh--------cCCCeeEEEeccHHHHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHhcCC
Q psy1544 880 VSGKFEL-LDRILPKLK--------STGHRVLLFCQMTQLMNILEDYFSY---RGFKYMRLDGTTKAEDRGDLLKKFNAP 947 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~--------~~g~KVLIFsq~~~~ld~L~~~L~~---~g~~~~~idG~~~~~eR~~~i~~Fn~~ 947 (1331)
.+||... +.-++..+. ..+.++||.+..+..+..+.+.+.. .++.+..+.|+.+...+...+ ..
T Consensus 67 GsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 142 (228)
T 3iuy_A 67 GTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK- 142 (228)
T ss_dssp TSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-
T ss_pred CChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-
Confidence 3778643 333333332 2567899999999998888887776 378899999988755443333 21
Q ss_pred CCCceEEEeecc-c-----cccccCCCCCCEEEE
Q psy1544 948 DSEYFIFVLSTR-A-----GGLGLNLQTADTVII 975 (1331)
Q Consensus 948 ~~~~~v~LlST~-a-----ggeGLNL~~ad~VI~ 975 (1331)
++.| +++|. . ....+++...++||+
T Consensus 143 --~~~i-iv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 --GVDI-IIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp --CCSE-EEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred --CCCE-EEECHHHHHHHHHcCCcCcccceEEEE
Confidence 2334 44552 1 123456777777765
No 300
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=33.03 E-value=52 Score=31.51 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=37.1
Q ss_pred eEEEeccH-------HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 901 VLLFCQMT-------QLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 901 VLIFsq~~-------~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
|.||+... .-...+..+|...|+.|..++-++..+.|..+++..+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 55665443 2347899999999999999999999999999999984
No 301
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=32.71 E-value=80 Score=38.82 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=57.4
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
.+||-... +++.+.. +.++||.+.....+.-..+.|...|+.+..++|+++..++..++..+....+.+.|++++..
T Consensus 69 GsGKTl~~--~lpal~~-~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 69 GGGKSLCY--QLPALCS-DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp TSCTTHHH--HHHHHTS-SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CChHHHHH--HHHHHHc-CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 36776432 2232333 34899999999999988888988899999999999999999888888533455667666554
No 302
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=32.63 E-value=1.2e+02 Score=28.69 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=36.7
Q ss_pred CCeeEEEec------cHHHHHHHHHHHHhcCCe---EEEEcCCCCHHHHHHHHHHh
Q psy1544 898 GHRVLLFCQ------MTQLMNILEDYFSYRGFK---YMRLDGTTKAEDRGDLLKKF 944 (1331)
Q Consensus 898 g~KVLIFsq------~~~~ld~L~~~L~~~g~~---~~~idG~~~~~eR~~~i~~F 944 (1331)
.++|+||+. +...+.....+|...|+. |..++=....+-|..+....
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~s 70 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFS 70 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHh
Confidence 358999998 578899999999999998 88888766666666555444
No 303
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=32.55 E-value=97 Score=31.52 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCCcEEEEeCCccHHH-HHHHHHHHcCCCcEEEecCCh--hHHHHHHHHhhccCccEEEee
Q psy1544 605 VNGPFLIIVPLSTLSN-WSLEFERWAPSVNVVAYKGSP--HLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 605 ~~~p~LIV~P~sll~q-W~~E~~k~~p~~~v~~~~g~~--~~r~~~~~~~~~~~~~VvItT 662 (1331)
..+++||.|+..-... ....|... +..+..++|.. ..|.........+...|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 4566999999855533 33344432 56788888853 334444555567788999999
No 304
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=32.50 E-value=1.4e+02 Score=36.08 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-CCcEEEecCC--hhHHHHHHHHhhccCccEEEeeH
Q psy1544 588 KTIQTIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-SVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTTY 663 (1331)
Q Consensus 588 KTi~ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItTy 663 (1331)
+....+..+...+......+++||+|++.-. ..+...|...++ +..+..++|. ...|..+......+..+|+|+|-
T Consensus 321 ~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~ 400 (563)
T 3i5x_A 321 SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD 400 (563)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc
Confidence 3333444444444443445679999998544 555666666555 6788888886 44566666667778899999985
Q ss_pred H
Q psy1544 664 E 664 (1331)
Q Consensus 664 e 664 (1331)
-
T Consensus 401 ~ 401 (563)
T 3i5x_A 401 V 401 (563)
T ss_dssp G
T ss_pred h
Confidence 3
No 305
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=32.34 E-value=49 Score=36.28 Aligned_cols=33 Identities=18% Similarity=0.020 Sum_probs=23.1
Q ss_pred HHHHHHhcCC---Cc-eEEecCCCCCHHHHHHHHHHH
Q psy1544 566 EWMVSLFNNN---LN-GILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 566 ~~l~~~~~~~---~~-gILADemGlGKTi~ai~li~~ 598 (1331)
.|+...+... .+ .+|..+.|+|||..+.+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3444444333 34 578899999999999888765
No 306
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=32.34 E-value=87 Score=43.30 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=33.2
Q ss_pred cCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHH
Q psy1544 573 NNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNW 621 (1331)
Q Consensus 573 ~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW 621 (1331)
..+...+|+.+.|+|||..++.++..+... .++++++.-.....+.
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI 775 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHHH
Confidence 344456899999999999999988877643 3468888766555443
No 307
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=32.32 E-value=90 Score=28.98 Aligned_cols=40 Identities=5% Similarity=-0.057 Sum_probs=22.4
Q ss_pred cCccEEEEeCCcccCCcchHHHHHHHHhc--cCCceeeeccCC
Q psy1544 676 LHWKYMIIDEGHRMKNHHCKLTHILNTFY--VAPHRLLLTGTP 716 (1331)
Q Consensus 676 ~~~~~vIiDEaHrikn~~sk~~~~l~~~~--~~~~rllLTgTP 716 (1331)
..+++||+|-.-- ......+.+.++... .....+++|+..
T Consensus 54 ~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLP-KKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCS-SSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCC-cccHHHHHHHHHcCcccccccEEEEecCC
Confidence 4689999994321 122334455555442 234567888764
No 308
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=32.27 E-value=88 Score=29.23 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=43.3
Q ss_pred cEEEecCChhHHHHHHHHhhccC-ccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASK-FNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~-~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
++++.......+..+.......+ +.|+.+ .........+....+++||+|=.- -......+.+.++........++
T Consensus 16 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~--~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ii~ 92 (135)
T 3snk_A 16 QVALFSSDPNFKRDVATRLDALAIYDVRVS--ETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALWATVPLIA 92 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSSEEEEEE--CGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGGTTCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCeEEEEe--ccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhCCCCcEEE
Confidence 45555555555555555444444 555433 223333344556679999999321 11223344555655544556788
Q ss_pred eccCC
Q psy1544 712 LTGTP 716 (1331)
Q Consensus 712 LTgTP 716 (1331)
+|+..
T Consensus 93 ~s~~~ 97 (135)
T 3snk_A 93 VSDEL 97 (135)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 88854
No 309
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=31.95 E-value=1.6e+02 Score=31.55 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=55.7
Q ss_pred ccchhHH-HHHhhhhhh------cCCCeeEEEeccHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHhcCCC
Q psy1544 880 VSGKFEL-LDRILPKLK------STGHRVLLFCQMTQLMNILEDYFSY----RGFKYMRLDGTTKAEDRGDLLKKFNAPD 948 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~------~~g~KVLIFsq~~~~ld~L~~~L~~----~g~~~~~idG~~~~~eR~~~i~~Fn~~~ 948 (1331)
.+||... +.-++..+. ..+.++||.+..+..+..+...|.. .++.+..+.|+.........+..
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 175 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----- 175 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH-----
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC-----
Confidence 3777754 344443332 2577899999999887776666654 47888999998886554443322
Q ss_pred CCceEEEeecc------c-cccccCCCCCCEEEE
Q psy1544 949 SEYFIFVLSTR------A-GGLGLNLQTADTVII 975 (1331)
Q Consensus 949 ~~~~v~LlST~------a-ggeGLNL~~ad~VI~ 975 (1331)
++.| +++|. . .+.++++...+.||+
T Consensus 176 -~~~I-iv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 -GINI-IVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp -CCSE-EEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred -CCCE-EEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 1334 55652 1 223567778887776
No 310
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.76 E-value=83 Score=29.59 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=41.4
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCcccccCccEEEEeCCcccCC-cchHHHHHHHHhccCCce
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKLHWKYMIIDEGHRMKN-HHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaHrikn-~~sk~~~~l~~~~~~~~r 709 (1331)
.+++++......+..+...+...++.|..++ ..... ..+....+++||+|- +.+ ....+.+.++........
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~---~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pi 78 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAF---TFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKV 78 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHH---HHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHH---HHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCE
Confidence 3455555555555555555554556555332 12221 222334689999995 322 222344455544344567
Q ss_pred eeeccCC
Q psy1544 710 LLLTGTP 716 (1331)
Q Consensus 710 llLTgTP 716 (1331)
+++|+..
T Consensus 79 i~ls~~~ 85 (142)
T 2qxy_A 79 AVLSAYV 85 (142)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 8888864
No 311
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=31.48 E-value=77 Score=32.93 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=48.7
Q ss_pred ccchhHH-HHHhhhhhh--cCCCeeEEEeccHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q psy1544 880 VSGKFEL-LDRILPKLK--STGHRVLLFCQMTQLMNILEDYFSY----RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYF 952 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~--~~g~KVLIFsq~~~~ld~L~~~L~~----~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~ 952 (1331)
.+||-.. +.-++..+. ..+.++||.+.....+..+...+.. .++.+..++|+.+..+... .+. + ..
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~--~~ 133 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR--D--AQ 133 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--T--CS
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC--C--CC
Confidence 4788765 455555443 2356899999998887766665543 4788999999887554332 222 1 33
Q ss_pred EEEeecccc-----ccccCCCCCCEEEE
Q psy1544 953 IFVLSTRAG-----GLGLNLQTADTVII 975 (1331)
Q Consensus 953 v~LlST~ag-----geGLNL~~ad~VI~ 975 (1331)
|++.+.... ...+++...+.||+
T Consensus 134 iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 134 IVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 444333221 23455666777665
No 312
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.45 E-value=96 Score=28.21 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.3
Q ss_pred CeeEEEe------ccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 899 HRVLLFC------QMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 899 ~KVLIFs------q~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
++|+||+ .+...+..+..+|...|+.|..++-......+..+...+.
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 4799998 4677889999999999999988887777666666666664
No 313
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=31.00 E-value=1.5e+02 Score=29.20 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=37.5
Q ss_pred CCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEee
Q psy1544 606 NGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 606 ~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItT 662 (1331)
.+++||.|+..-. ......|... +..+..++|. ...|.........+...|+|+|
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 3469999998554 4444445443 5677888886 3445555556667888999999
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=30.92 E-value=52 Score=46.15 Aligned_cols=57 Identities=14% Similarity=0.010 Sum_probs=41.6
Q ss_pred HHHHHHHH--HhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHH
Q psy1544 563 KGLEWMVS--LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWS 622 (1331)
Q Consensus 563 ~gv~~l~~--~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll~qW~ 622 (1331)
..+.+++. -+..+.-.+|+.+.|+|||..++.++..+... .+++++|.-.....+|.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~---g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHH
Confidence 34566653 23344456899999999999999888776543 45689998888888885
No 315
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.86 E-value=68 Score=38.75 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=56.1
Q ss_pred ccchhHHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeecc
Q psy1544 880 VSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTR 959 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~ 959 (1331)
.+||-.. -+++.+.. +.++||.+.....+.-....|...|+.+..++|+.+..++...+..+..+ .+.+++++..
T Consensus 50 GsGKTl~--~~lp~l~~-~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~--~~~ilv~Tpe 124 (523)
T 1oyw_A 50 GGGKSLC--YQIPALLL-NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG--QIRLLYIAPE 124 (523)
T ss_dssp HHHHHHH--HHHHHHHS-SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT--CCSEEEECHH
T ss_pred CcHHHHH--HHHHHHHh-CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCCEEEECHH
Confidence 4777642 22333333 34899999999999988899999999999999999998888888887643 3456555554
Q ss_pred c
Q psy1544 960 A 960 (1331)
Q Consensus 960 a 960 (1331)
.
T Consensus 125 ~ 125 (523)
T 1oyw_A 125 R 125 (523)
T ss_dssp H
T ss_pred H
Confidence 3
No 316
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=30.69 E-value=1.4e+02 Score=36.23 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeCCccH-HHHHHHHHHHcC-CCcEEEecCC--hhHHHHHHHHhhccCccEEEeeHH
Q psy1544 592 TIALITYLMEKKKVNGPFLIIVPLSTL-SNWSLEFERWAP-SVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTTYE 664 (1331)
Q Consensus 592 ai~li~~l~~~~~~~~p~LIV~P~sll-~qW~~E~~k~~p-~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItTye 664 (1331)
.+..+...+......+.+||+|++.-. ..+...|...++ +..+..++|. ...|......+..+..+|+|+|--
T Consensus 274 ~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~ 350 (579)
T 3sqw_A 274 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 350 (579)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG
T ss_pred HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch
Confidence 344444444443445679999998544 556666766654 6788889987 445556666667788999999853
No 317
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=30.60 E-value=33 Score=31.30 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=32.4
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
..+..|||||..-.........|...|+++..++|++.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 34678999999887788889999999999999999854
No 318
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=30.53 E-value=1.5e+02 Score=33.41 Aligned_cols=91 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred ccchhHHH-HHhhhhhhc--CCCeeEEEeccHHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCc
Q psy1544 880 VSGKFELL-DRILPKLKS--TGHRVLLFCQMTQLMNILEDYFSYR-----GFKYMRLDGTTKAEDRGDLLKKFNAPDSEY 951 (1331)
Q Consensus 880 ~s~K~~~L-~~lL~~l~~--~g~KVLIFsq~~~~ld~L~~~L~~~-----g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~ 951 (1331)
.+||.... .-++..+.. .+.++||.+.....+..+...+... ++++..++|+.+.......+..-+ .
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~ 129 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC-----P 129 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSC-----C
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCC-----C
Confidence 37787543 333333322 3458999999998888777666543 789999999999777666554421 2
Q ss_pred eEEEeecccc-----ccccCCCCCCEEEE
Q psy1544 952 FIFVLSTRAG-----GLGLNLQTADTVII 975 (1331)
Q Consensus 952 ~v~LlST~ag-----geGLNL~~ad~VI~ 975 (1331)
.|++.+.... ...+++...+.||+
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 3444443322 23456777887776
No 319
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=30.42 E-value=43 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=31.9
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFK-YMRLDGTTK 933 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~-~~~idG~~~ 933 (1331)
..+..|||||..-.........|...|+. +..++|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 35568999999888888888999999995 888999865
No 320
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=30.24 E-value=76 Score=30.76 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=39.1
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEE--EeeHHHHHhccCccccc--CccEEEEeCCcccCCcchHHHHHHHHhccCCc
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVL--LTTYEYVIKDKGPLAKL--HWKYMIIDEGHRMKNHHCKLTHILNTFYVAPH 708 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~Vv--ItTye~l~~~~~~l~~~--~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~ 708 (1331)
+++++......+..+...+...++.|+ ..+...+.. .+... .+++||+|=.- -......+.+.++.......
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~---~l~~~~~~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ 113 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVI---KYKNHYPNIDIVTLXITM-PKMDGITCLSNIMEFDKNAR 113 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHH---HHHHHGGGCCEEEECSSC-SSSCHHHHHHHHHHHCTTCC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH---HHHhcCCCCCEEEEeccC-CCccHHHHHHHHHhhCCCCc
Confidence 444455555444444444444445543 122222221 12223 57899998421 12223345555655545556
Q ss_pred eeeeccCC
Q psy1544 709 RLLLTGTP 716 (1331)
Q Consensus 709 rllLTgTP 716 (1331)
.+++|+..
T Consensus 114 ii~ls~~~ 121 (157)
T 3hzh_A 114 VIMISALG 121 (157)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 78888864
No 321
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=29.72 E-value=97 Score=29.72 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=39.1
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
+++++......+..+...+...++.|..++ ..... ..+....+++||+|=.-- ......+.+.++........++
T Consensus 16 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~---~~l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 91 (153)
T 3hv2_A 16 EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQAL---QLLASREVDLVISAAHLP-QMDGPTLLARIHQQYPSTTRIL 91 (153)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHH---HHHHHSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSEEEE
T ss_pred eEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHH---HHHHcCCCCEEEEeCCCC-cCcHHHHHHHHHhHCCCCeEEE
Confidence 344444444444444444444444444332 11111 122334689999994321 2223344555555444556788
Q ss_pred eccCC
Q psy1544 712 LTGTP 716 (1331)
Q Consensus 712 LTgTP 716 (1331)
+|+..
T Consensus 92 ~s~~~ 96 (153)
T 3hv2_A 92 LTGDP 96 (153)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 88864
No 322
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=29.46 E-value=36 Score=30.85 Aligned_cols=37 Identities=11% Similarity=0.310 Sum_probs=32.3
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
.+..|+|||..-.........|...|+++..++|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999888888899999999999999999854
No 323
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.17 E-value=32 Score=30.95 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=6.4
Q ss_pred CCCccccccccccc
Q psy1544 979 DWNPHQDLQAQDRA 992 (1331)
Q Consensus 979 ~wNp~~~~QaiGRa 992 (1331)
|.++....+++.++
T Consensus 102 p~~~~~l~~~l~~~ 115 (119)
T 2j48_A 102 PLDPQLLLTTLQGL 115 (119)
T ss_dssp CSTTHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHH
Confidence 44444444444443
No 324
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=28.72 E-value=33 Score=37.12 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=20.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|.-+.|+|||..+-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4456889999999999888776654
No 325
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=28.67 E-value=1.1e+02 Score=28.20 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.5
Q ss_pred CeeEEEec------cHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 899 HRVLLFCQ------MTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 899 ~KVLIFsq------~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
++|+||+. +...+..+..+|...|+.|..++=......+..+...+.
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 67 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC
Confidence 47999987 555788889999999999999998877766776666554
No 326
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=28.61 E-value=3e+02 Score=30.81 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=16.1
Q ss_pred hcCCCceEEecCCCCCHHHHH
Q psy1544 572 FNNNLNGILADEMGLGKTIQT 592 (1331)
Q Consensus 572 ~~~~~~gILADemGlGKTi~a 592 (1331)
...+...+|.-++|+|||-..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 345667788889999999643
No 327
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=28.47 E-value=1.9e+02 Score=29.27 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=56.4
Q ss_pred ccchhHH-HHHhhhhhh-----cCCCeeEEEeccHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHhcCCCCCc
Q psy1544 880 VSGKFEL-LDRILPKLK-----STGHRVLLFCQMTQLMNILEDYFSYR--GFKYMRLDGTTKAEDRGDLLKKFNAPDSEY 951 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~-----~~g~KVLIFsq~~~~ld~L~~~L~~~--g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~ 951 (1331)
.+||... +.-++..+. ..+.++||.+.....+..+...+... ++++..++|+.+.......+.. +.
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 121 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR------GA 121 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH------CC
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC------CC
Confidence 4788765 444444443 34678999999998888888877755 5788889998876554444322 12
Q ss_pred eEEEeecc-cc-----ccccCCCCCCEEEE
Q psy1544 952 FIFVLSTR-AG-----GLGLNLQTADTVII 975 (1331)
Q Consensus 952 ~v~LlST~-ag-----geGLNL~~ad~VI~ 975 (1331)
.| +++|. .. ...+++...+.||+
T Consensus 122 ~i-~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 122 DA-VVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp SE-EEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CE-EEECHHHHHHHHHcCCcchhhceEEEE
Confidence 34 45553 11 12456777777776
No 328
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=28.41 E-value=33 Score=30.69 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=30.7
Q ss_pred CeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 899 HRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 899 ~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
.+|+|||..-.........|...|+.+..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999988888888899999999888999865
No 329
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=28.38 E-value=1.5e+02 Score=35.59 Aligned_cols=67 Identities=21% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhc----CCCCcEEEEe----CCccHHHHHHHHHHHc
Q psy1544 562 IKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKK----KVNGPFLIIV----PLSTLSNWSLEFERWA 629 (1331)
Q Consensus 562 ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~----~~~~p~LIV~----P~sll~qW~~E~~k~~ 629 (1331)
+.+|..|+-.-...+.+|+++ -|+|||..++..|....... +...-++|+| ..+.+..+.+++....
T Consensus 150 iraID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g 224 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGD-RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDAD 224 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred ceeeccccccccCCEEEEecC-CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcC
Confidence 356665554333444456555 89999999887776655421 1112233333 3356677777777643
No 330
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.04 E-value=1.3e+02 Score=27.42 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=40.7
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHh--ccCCcee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTF--YVAPHRL 710 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~--~~~~~rl 710 (1331)
++++.......+..+...+...++.|..++- .......+....+++||+|=.- -......+.+.++.. ......+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlii~D~~l-~~~~g~~~~~~l~~~~~~~~~~ii 81 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEMLGFQADYVMS--GTDALHAMSTRGYDAVFIDLNL-PDTSGLALVKQLRALPMEKTSKFV 81 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTEEEEEESS--HHHHHHHHHHSCCSEEEEESBC-SSSBHHHHHHHHHHSCCSSCCEEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCCEEEECC--HHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHhhhccCCCCEE
Confidence 4445555555555554444444454433321 1111122333468999999422 122233455556554 2344568
Q ss_pred eeccCCCCC
Q psy1544 711 LLTGTPLQN 719 (1331)
Q Consensus 711 lLTgTPlqN 719 (1331)
++|+..-..
T Consensus 82 ~~s~~~~~~ 90 (127)
T 3i42_A 82 AVSGFAKND 90 (127)
T ss_dssp EEECC-CTT
T ss_pred EEECCcchh
Confidence 888875443
No 331
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=27.28 E-value=31 Score=41.57 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHH
Q psy1544 563 KGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 563 ~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~ 598 (1331)
..+..+......+.+.+|..++|+|||..|-++...
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHH
Confidence 344444444445778899999999999887666543
No 332
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.01 E-value=1.2e+02 Score=28.98 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=40.0
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
.+++++......+..+...+...++.|+.++ ..... ..+....+++||+|-.-- ......+.+.++........+
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~---~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDAL---EALKGTSVQLVISDMRMP-EMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHH---HHHTTSCCSEEEEESSCS-SSCHHHHHHHHHHHCTTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHH---HHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCcEE
Confidence 3445555555555544444444445544332 11111 122334689999995321 112334455555544445678
Q ss_pred eeccCC
Q psy1544 711 LLTGTP 716 (1331)
Q Consensus 711 lLTgTP 716 (1331)
++|+..
T Consensus 84 ~ls~~~ 89 (154)
T 2rjn_A 84 VISGYA 89 (154)
T ss_dssp EEECGG
T ss_pred EEecCC
Confidence 888764
No 333
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=26.95 E-value=1.1e+02 Score=27.74 Aligned_cols=80 Identities=9% Similarity=0.068 Sum_probs=38.8
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEE--eeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLL--TTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvI--tTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
++++.......+..+.......++.++. .+...... .+....+++||+|-.-- ...+..+.+.++........+
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~---~~~~~~~dlil~D~~l~-~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE---KYKELKPDIVTMDITMP-EMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHH---HHHHHCCSEEEEECSCG-GGCHHHHHHHHHHHCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHH---HHHhcCCCEEEEeCCCC-CCcHHHHHHHHHhhCCCCeEE
Confidence 3445555555555444444444555432 22222221 12233589999995321 112233445555443445678
Q ss_pred eeccCC
Q psy1544 711 LLTGTP 716 (1331)
Q Consensus 711 lLTgTP 716 (1331)
++|+..
T Consensus 80 ~~s~~~ 85 (120)
T 1tmy_A 80 VCSAMG 85 (120)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 888864
No 334
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.71 E-value=1.8e+02 Score=27.17 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=39.0
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCccc--ccCccEEEEeCCcccCCcchHHHHHHHHhccCCce
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLA--KLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~--~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~r 709 (1331)
+++++......+..+...+...++.|+.++ ...... .+. ...+++||+|=.- -......+.+.++........
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~---~~~~~~~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLR---IFTENCNSIDVVITDMKM-PKLSGMDILREIKKITPHMAV 80 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHH---HHHHTTTTCCEEEEESCC-SSSCHHHHHHHHHHHCTTCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHH---HHHhCCCCCCEEEEeCCC-CCCcHHHHHHHHHHhCCCCeE
Confidence 444455555444444444444445444332 221111 122 3468999999321 122233445555555445567
Q ss_pred eeeccCC
Q psy1544 710 LLLTGTP 716 (1331)
Q Consensus 710 llLTgTP 716 (1331)
+++|+..
T Consensus 81 i~ls~~~ 87 (143)
T 3jte_A 81 IILTGHG 87 (143)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 8888754
No 335
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=26.63 E-value=1.6e+02 Score=30.48 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=37.8
Q ss_pred CCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEee
Q psy1544 606 NGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 606 ~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItT 662 (1331)
.+++||.|+..-. ......|... +..+..++|. ...|.........+..+|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 4569999998544 4444445443 5677788886 4455555666677889999998
No 336
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=26.61 E-value=1.2e+02 Score=28.66 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=40.6
Q ss_pred CeeEEEec------cHHHHHHHHHHHHhcCCe-EEEEcCCCCHHHHHHHHHHhcCCCCCceEEEee
Q psy1544 899 HRVLLFCQ------MTQLMNILEDYFSYRGFK-YMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLS 957 (1331)
Q Consensus 899 ~KVLIFsq------~~~~ld~L~~~L~~~g~~-~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlS 957 (1331)
++|+||+. +...+.....+|...|+. |..++=....+.+..+..... ...+-++.+.
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg--~~tvP~vfI~ 83 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN--WPTIPQVYLN 83 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHT--CCSSCEEEET
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhC--CCCcCeEEEC
Confidence 48999998 688899999999999995 888887666666665544433 2334444444
No 337
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.50 E-value=1e+02 Score=29.85 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=37.0
Q ss_pred eeEEEec------cHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 900 RVLLFCQ------MTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 900 KVLIFsq------~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
+|+||+. +...+..+..+|...|+.|..++=....+.+..+.....
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G 87 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN 87 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC
Confidence 7999987 678899999999999999999887766666666655543
No 338
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=26.39 E-value=2.1e+02 Score=28.53 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=37.5
Q ss_pred CCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEee
Q psy1544 606 NGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 606 ~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItT 662 (1331)
.+++||.|+..-. ......|... +..+..++|. ...|.........+...|+|+|
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 4569999998554 4444455543 5677888886 3445555556667888999999
No 339
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.37 E-value=1.3e+02 Score=27.86 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=39.5
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEE-Ee-eHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVL-LT-TYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~Vv-It-Tye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
++++.......+..+.......++.++ .+ +.+... ..+....+++||+|-.- -......+.+.++........+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~---~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAV---QRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHH---HHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHH---HHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCCCeEE
Confidence 344555555555544444444444443 11 111111 11223468999999422 1222334555555554455678
Q ss_pred eeccCCCCCC
Q psy1544 711 LLTGTPLQNK 720 (1331)
Q Consensus 711 lLTgTPlqN~ 720 (1331)
++|+..-...
T Consensus 79 ~~s~~~~~~~ 88 (134)
T 3f6c_A 79 IVSAKNDHFY 88 (134)
T ss_dssp EEECC---CT
T ss_pred EEeCCCChHH
Confidence 8888754333
No 340
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=25.92 E-value=2.1e+02 Score=34.33 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=24.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
.+++-..|+|||..+..++.++... ...++||..
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 3556678999999999998887653 234677765
No 341
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.83 E-value=66 Score=33.52 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=25.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
|..-..|.|||.+++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 5556789999999999998886653 34777655
No 342
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=25.79 E-value=1.2e+02 Score=33.94 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHH
Q psy1544 585 GLGKTIQTIALITYLM 600 (1331)
Q Consensus 585 GlGKTi~ai~li~~l~ 600 (1331)
|+|||=.++.++..|.
T Consensus 48 GTGKTP~vi~L~~~L~ 63 (315)
T 4ehx_A 48 GSGKTSFVMYLADLLK 63 (315)
T ss_dssp CCSHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHh
Confidence 8999999999988774
No 343
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.73 E-value=1.4e+02 Score=27.88 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=22.2
Q ss_pred cCccEEEEeCCcccCC-cchHHHHHHHH----hccCCceeeeccCC
Q psy1544 676 LHWKYMIIDEGHRMKN-HHCKLTHILNT----FYVAPHRLLLTGTP 716 (1331)
Q Consensus 676 ~~~~~vIiDEaHrikn-~~sk~~~~l~~----~~~~~~rllLTgTP 716 (1331)
..+++||+|=. +.+ ....+.+.++. .......+++|+..
T Consensus 59 ~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 59 RWPSIICIDIN--MPGINGWELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp CCCSEEEEESS--CSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred CCCCEEEEcCC--CCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 46899999932 222 23344555555 22344567788764
No 344
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=25.44 E-value=1.5e+02 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=24.4
Q ss_pred HHHHHHHH-HhcCCCceEEecCCCCCHHHHHHHHHHH
Q psy1544 563 KGLEWMVS-LFNNNLNGILADEMGLGKTIQTIALITY 598 (1331)
Q Consensus 563 ~gv~~l~~-~~~~~~~gILADemGlGKTi~ai~li~~ 598 (1331)
.++.+++. -+..+.-.+|+.+.|+|||..++.++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555552 1223334588999999999998888765
No 345
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=25.25 E-value=60 Score=29.31 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=11.9
Q ss_pred eeEEEeccHHHHHHHHHHHHhcCCe
Q psy1544 900 RVLLFCQMTQLMNILEDYFSYRGFK 924 (1331)
Q Consensus 900 KVLIFsq~~~~ld~L~~~L~~~g~~ 924 (1331)
+|||..........+...|...|+.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~ 27 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYE 27 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE
Confidence 3444444444444455555444443
No 346
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=24.88 E-value=1.3e+02 Score=28.04 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=32.7
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccc
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRA 960 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~a 960 (1331)
..+|||..........|...|...|+.+.... +. ..+++.+.. ..+.++|+....
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~--~~~dlii~d~~l 61 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISAD---SG---GQCIDLLKK--GFSGVVLLDIMM 61 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEES---SH---HHHHHHHHT--CCCEEEEEESCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeC---CH---HHHHHHHHh--cCCCEEEEeCCC
Confidence 45788888888888888888887777654332 22 233343332 224566666554
No 347
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=24.88 E-value=2.7e+02 Score=27.29 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred CCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEee
Q psy1544 606 NGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 606 ~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItT 662 (1331)
.+++||.|+..-. ......|... +..+..++|. ...|.........+...|+|+|
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 4569999998544 4444455443 4667788886 3445555556677888999999
No 348
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=24.86 E-value=2.3e+02 Score=28.32 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=53.4
Q ss_pred HHHHHhhhhhhcCCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccccc
Q psy1544 885 ELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLG 964 (1331)
Q Consensus 885 ~~L~~lL~~l~~~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~aggeG 964 (1331)
..+.+.+.........+.|.|........|+..|...|+.+..+++... .|. .+ +.++|--.+-|
T Consensus 48 ~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~---v~v~t~~~~KG 112 (174)
T 3dmn_A 48 DQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG---VIVVPSFLAKG 112 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS---EEEEEGGGCTT
T ss_pred HHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC---eEEEEccccCC
Confidence 3444444442233457888899999999999999999999988876543 132 23 34556566677
Q ss_pred cCCCCCCEEEEeCCCC
Q psy1544 965 LNLQTADTVIIFDSDW 980 (1331)
Q Consensus 965 LNL~~ad~VI~~D~~w 980 (1331)
+- .++||++++..
T Consensus 113 lE---f~~V~~~~~~~ 125 (174)
T 3dmn_A 113 LE---FDAVIVWNANQ 125 (174)
T ss_dssp CC---EEEEEEETCBT
T ss_pred cC---CCEEEEecCCc
Confidence 54 78999998754
No 349
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=24.85 E-value=1.7e+02 Score=29.10 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=37.1
Q ss_pred CCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEee
Q psy1544 606 NGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 606 ~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItT 662 (1331)
.+++||.|+..-. ......|... +..+..++|. ...|.........+...|+|+|
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 4579999998554 3444444443 5677888887 4445555556667888999998
No 350
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=24.76 E-value=43 Score=30.90 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
.+..++|||..-.........|...|++.+.+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4568999998877777888899999999999999854
No 351
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.76 E-value=1.4e+02 Score=28.43 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=40.3
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
+++++......+..+...+...++.|..++ ..... ..+....+++||+|-.-- ......+...++........++
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~---~~l~~~~~dliild~~l~-~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 5 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL---AGLSADFAGIVISDIRMP-GMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHH---HTCCTTCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHH---HHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCCCCEEE
Confidence 445555555555544444444455554332 22222 223345689999995321 1123344555555444556788
Q ss_pred eccCC
Q psy1544 712 LTGTP 716 (1331)
Q Consensus 712 LTgTP 716 (1331)
+|+..
T Consensus 81 ls~~~ 85 (155)
T 1qkk_A 81 VTGHG 85 (155)
T ss_dssp EECGG
T ss_pred EECCC
Confidence 88753
No 352
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=24.73 E-value=68 Score=38.40 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=52.3
Q ss_pred ccchhHHHHHhhhh-hhcC----CCeeEEEeccHHHHHHHHHHHH----hcCCeEEEEcCCCCHHHHHHHHHHhcCCCCC
Q psy1544 880 VSGKFELLDRILPK-LKST----GHRVLLFCQMTQLMNILEDYFS----YRGFKYMRLDGTTKAEDRGDLLKKFNAPDSE 950 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~-l~~~----g~KVLIFsq~~~~ld~L~~~L~----~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~ 950 (1331)
.+||.....-.+.. +... +.++||.+..+..+..+...+. ..|+.+..++|+.+...+...+.. +
T Consensus 29 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~ 102 (555)
T 3tbk_A 29 GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE------D 102 (555)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH------H
T ss_pred CChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc------C
Confidence 37787654333332 2221 6789999999877665555544 449999999999976554333321 1
Q ss_pred ceEEEeecccccc----c-c-CCCCCCEEEE
Q psy1544 951 YFIFVLSTRAGGL----G-L-NLQTADTVII 975 (1331)
Q Consensus 951 ~~v~LlST~agge----G-L-NL~~ad~VI~ 975 (1331)
+.|++++...... | + ++...++||+
T Consensus 103 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 103 NDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp CSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 2344444333221 1 2 5566777776
No 353
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=24.64 E-value=1.6e+02 Score=30.54 Aligned_cols=83 Identities=7% Similarity=0.059 Sum_probs=45.7
Q ss_pred CcEEEecCChhHHHHHHHHhh-ccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCc-chHHHHHHHH-hccCCc
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMK-ASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNH-HCKLTHILNT-FYVAPH 708 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~-~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~-~sk~~~~l~~-~~~~~~ 708 (1331)
.++++.......+..+...+. ..++.|+.+.......-...+....+++||+|= .+-+. +..+.+.++. ......
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~--~mp~~~G~~~~~~lr~~~~~~~~ 85 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDY--SRISDDVLTDYSSFKHISCPDAK 85 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEG--GGCCHHHHHHHHHHHHHHCTTCE
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeC--CCCCCCHHHHHHHHHHhhCCCCc
Confidence 345566666666655555544 345666554433322222234455789999992 33332 2344455555 334556
Q ss_pred eeeeccCC
Q psy1544 709 RLLLTGTP 716 (1331)
Q Consensus 709 rllLTgTP 716 (1331)
.+++|+..
T Consensus 86 ii~lt~~~ 93 (225)
T 3klo_A 86 EVIINCPQ 93 (225)
T ss_dssp EEEEEECT
T ss_pred EEEEECCc
Confidence 78899875
No 354
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=24.19 E-value=1.5e+02 Score=27.58 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HcCCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccc-cCccEEEEeCCcccCCcchHHHHHHHHhccC
Q psy1544 628 WAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAK-LHWKYMIIDEGHRMKNHHCKLTHILNTFYVA 706 (1331)
Q Consensus 628 ~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~-~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~ 706 (1331)
+.+..+++++......+..+...+...++ .+.+..........+.. ..+++||+| .+--......+.+.++.....
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~al~~l~~~~~~dlvilD-~~l~~~~g~~~~~~l~~~~~~ 88 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGA--EVTVHPSGSAFFQHRSQLSTCDLLIVS-DQLVDLSIFSLLDIVKEQTKQ 88 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTC--EEEEESSHHHHHHTGGGGGSCSEEEEE-TTCTTSCHHHHHHHHTTSSSC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCC--EEEEeCCHHHHHHHHHhCCCCCEEEEe-CCCCCCCHHHHHHHHHhhCCC
Q ss_pred Cceeeec-cCC
Q psy1544 707 PHRLLLT-GTP 716 (1331)
Q Consensus 707 ~~rllLT-gTP 716 (1331)
...+++| +..
T Consensus 89 ~~ii~ls~~~~ 99 (138)
T 2b4a_A 89 PSVLILTTGRH 99 (138)
T ss_dssp CEEEEEESCC-
T ss_pred CCEEEEECCCC
No 355
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=23.71 E-value=78 Score=38.61 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCC-cEEEEeCCc
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNG-PFLIIVPLS 616 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~-p~LIV~P~s 616 (1331)
....+++-.+|+|||...-++|..++....... .+++|=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 456799999999999998888888876543222 244444654
No 356
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=23.70 E-value=71 Score=33.57 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=24.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVP 614 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P 614 (1331)
|....-|.|||.+++.++..+... ..++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDR---GRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhc---CCeEEEEeC
Confidence 455677999999999999888654 235777764
No 357
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=23.69 E-value=2.2e+02 Score=26.87 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=34.4
Q ss_pred CeeEEEec------cHHHHHHHHHHHHhcCC-eEEEEcCCCCHHHHHHHHHHhc
Q psy1544 899 HRVLLFCQ------MTQLMNILEDYFSYRGF-KYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 899 ~KVLIFsq------~~~~ld~L~~~L~~~g~-~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
++|+||+. +.-........|...|+ .|..++=....+-|..+.+.-+
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg 73 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN 73 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhcc
Confidence 58999975 35677788888988888 5888877777666666555444
No 358
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.67 E-value=1.1e+02 Score=28.37 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=39.1
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCcccccCccEEEEeCCcc----cCCcchHHHHHHHHhccCC
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKLHWKYMIIDEGHR----MKNHHCKLTHILNTFYVAP 707 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaHr----ikn~~sk~~~~l~~~~~~~ 707 (1331)
+++++......+..+...+...++.|..++ ..... ..+....+++||+|-.-- .......+.+.++......
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~---~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 5 TIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLS---TVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHH---HHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHH---HHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 445555555555555544444445544322 11111 122334689999995321 0112234445555544455
Q ss_pred ceeeeccCC
Q psy1544 708 HRLLLTGTP 716 (1331)
Q Consensus 708 ~rllLTgTP 716 (1331)
..+++|+..
T Consensus 82 ~ii~ls~~~ 90 (140)
T 2qr3_A 82 PVVLFTAYA 90 (140)
T ss_dssp CEEEEEEGG
T ss_pred CEEEEECCC
Confidence 678888753
No 359
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=23.40 E-value=93 Score=28.74 Aligned_cols=75 Identities=11% Similarity=-0.009 Sum_probs=39.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEeeccccc-----cc-cCCCCCCEEEEeCCCCCccccccccccccccC
Q psy1544 923 FKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG-----LG-LNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 996 (1331)
Q Consensus 923 ~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~LlST~agg-----eG-LNL~~ad~VI~~D~~wNp~~~~QaiGRa~RiG 996 (1331)
+..+.+|-.++...-..+++.++.......|++++..... .. .....+...-++.-|+++....+++.++..-+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 6677777766665555666666543344556666544321 10 01112222333445677777777777766544
Q ss_pred C
Q psy1544 997 Q 997 (1331)
Q Consensus 997 Q 997 (1331)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 3
No 360
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=23.27 E-value=48 Score=31.67 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=31.7
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFK-YMRLDGTTK 933 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~-~~~idG~~~ 933 (1331)
..+.+|||||..-.........|...|+. +..++|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45678999999877778888889888995 888999975
No 361
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.23 E-value=1.2e+02 Score=30.39 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=41.3
Q ss_pred CcEEEecCChhHHHHHHHHhhccCccEEEeeH-HHHHhccCcccccCccEEEEeCCcccCC-cchHHHHHHHHhccCCce
Q psy1544 632 VNVVAYKGSPHLRKTLQAQMKASKFNVLLTTY-EYVIKDKGPLAKLHWKYMIIDEGHRMKN-HHCKLTHILNTFYVAPHR 709 (1331)
Q Consensus 632 ~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTy-e~l~~~~~~l~~~~~~~vIiDEaHrikn-~~sk~~~~l~~~~~~~~r 709 (1331)
.++++.......+..+.......+|.|..++- .... ..+....+++||+|= .+.+ .+..+.+.++........
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---~~~~~~~~dlvl~D~--~lp~~~g~~~~~~l~~~~~~~~i 82 (184)
T 3rqi_A 8 KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEAL---KLAGAEKFEFITVXL--HLGNDSGLSLIAPLCDLQPDARI 82 (184)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHH---HHHTTSCCSEEEECS--EETTEESHHHHHHHHHHCTTCEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHH---HHHhhCCCCEEEEec--cCCCccHHHHHHHHHhcCCCCCE
Confidence 34555555555555444444444455433321 1111 122344689999982 2322 334555666655455667
Q ss_pred eeeccCC
Q psy1544 710 LLLTGTP 716 (1331)
Q Consensus 710 llLTgTP 716 (1331)
+++||..
T Consensus 83 i~lt~~~ 89 (184)
T 3rqi_A 83 LVLTGYA 89 (184)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 8999864
No 362
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=23.05 E-value=88 Score=37.48 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=49.4
Q ss_pred ccchhHHHHHhhh-hhhcC----CCeeEEEeccHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHhcCCCCC
Q psy1544 880 VSGKFELLDRILP-KLKST----GHRVLLFCQMTQLMNILEDYFSY----RGFKYMRLDGTTKAEDRGDLLKKFNAPDSE 950 (1331)
Q Consensus 880 ~s~K~~~L~~lL~-~l~~~----g~KVLIFsq~~~~ld~L~~~L~~----~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~ 950 (1331)
.+||.....-.+. .+... +.++||.+.....+..+...+.. .|+.+..++|+.+...+...+.. +
T Consensus 32 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~ 105 (556)
T 4a2p_A 32 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE------D 105 (556)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH------H
T ss_pred CChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC------C
Confidence 3777655433332 22221 67899999998776665555544 49999999999876554332221 1
Q ss_pred ceEEEeeccccc----cc-c-CCCCCCEEEE
Q psy1544 951 YFIFVLSTRAGG----LG-L-NLQTADTVII 975 (1331)
Q Consensus 951 ~~v~LlST~agg----eG-L-NL~~ad~VI~ 975 (1331)
..|++++..... .| + ++...++||+
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 234444433322 11 3 5677787776
No 363
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.02 E-value=1.9e+02 Score=26.79 Aligned_cols=40 Identities=10% Similarity=-0.021 Sum_probs=23.0
Q ss_pred cCccEEEEeCCcccCCcchHHHHHHHHhccCCceeeeccCC
Q psy1544 676 LHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 676 ~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
..+++||+|=.- -......+.+.++........+++|+..
T Consensus 50 ~~~dlvi~d~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 50 HAPDVIITDIRM-PKLGGLEMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp HCCSEEEECSSC-SSSCHHHHHHHHHHTTCCCEEEECCCCC
T ss_pred cCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCcEEEEecCc
Confidence 368999998421 1222334455555554455677888764
No 364
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=22.56 E-value=2.2e+02 Score=28.98 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=37.8
Q ss_pred CcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEeeH
Q psy1544 607 GPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTTY 663 (1331)
Q Consensus 607 ~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItTy 663 (1331)
+++||.|+.... ......|... ++.+..++|. ...|.........+...|+|+|-
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 469999998544 4455555544 5677888887 44455555566678899999993
No 365
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.47 E-value=1.5e+02 Score=27.67 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCcEEEecCChhHHHHHHHHhhccCccEEEeeHHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHH--hccCC
Q psy1544 630 PSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNT--FYVAP 707 (1331)
Q Consensus 630 p~~~v~~~~g~~~~r~~~~~~~~~~~~~VvItTye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~--~~~~~ 707 (1331)
...++++.......+..+...+...++. +.+..........+....+++||+| .+--......+.+.++. .....
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~--v~~~~~~~~a~~~l~~~~~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~~~ 81 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFD--SDMVHSAAQALEQVARRPYAAMTVD-LNLPDQDGVSLIRALRRDSRTRDL 81 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCE--EEEECSHHHHHHHHHHSCCSEEEEC-SCCSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCe--EEEECCHHHHHHHHHhCCCCEEEEe-CCCCCCCHHHHHHHHHhCcccCCC
Q ss_pred ceeeeccC
Q psy1544 708 HRLLLTGT 715 (1331)
Q Consensus 708 ~rllLTgT 715 (1331)
..+++|+.
T Consensus 82 ~ii~~s~~ 89 (140)
T 3grc_A 82 AIVVVSAN 89 (140)
T ss_dssp EEEEECTT
T ss_pred CEEEEecC
No 366
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=22.30 E-value=72 Score=31.06 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=31.8
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFK-YMRLDGTTK 933 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~-~~~idG~~~ 933 (1331)
..+..|||||..-.........|...|+. +..++|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45668999999887888888999999995 888999855
No 367
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=22.26 E-value=1.7e+02 Score=32.97 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=20.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
..|.-+.|+|||-.+-.++..+.. ..+.++++.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g 164 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAA 164 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEe
Confidence 356778999999765555544432 234456554
No 368
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=22.20 E-value=2e+02 Score=26.17 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=38.8
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCcccccCccEEEEeCCcccCCcchHHHHHHHHhccCCceee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLL 711 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rll 711 (1331)
++++.......+..+.......++.|..++ ..... ..+....+++||+|-.-- ...+..+.+.++........++
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~---~~~~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 5 TVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFL---AFAPDVRNGVLVTDLRMP-DMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHH---HHGGGCCSEEEEEECCST-TSCHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHH---HHHhcCCCCEEEEECCCC-CCCHHHHHHHHHhcCCCCCEEE
Confidence 445555555545444444443445544332 11111 123334689999994221 1123344455554433456788
Q ss_pred eccCC
Q psy1544 712 LTGTP 716 (1331)
Q Consensus 712 LTgTP 716 (1331)
+|+..
T Consensus 81 ~s~~~ 85 (126)
T 1dbw_A 81 ITGHG 85 (126)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 88864
No 369
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=22.19 E-value=99 Score=39.46 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=36.1
Q ss_pred ccchhHHHHHhhhhhhcC-----CCeeEEEeccHHHHHHHHHHHH----hcCCeEEEEcCCCCHHHHH
Q psy1544 880 VSGKFELLDRILPKLKST-----GHRVLLFCQMTQLMNILEDYFS----YRGFKYMRLDGTTKAEDRG 938 (1331)
Q Consensus 880 ~s~K~~~L~~lL~~l~~~-----g~KVLIFsq~~~~ld~L~~~L~----~~g~~~~~idG~~~~~eR~ 938 (1331)
.+||.....-.+...... +.++||.+.....+..+...|. ..|+.+..++|+.+...+.
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSV 340 (797)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CH
T ss_pred CChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhH
Confidence 377876544433333222 6799999998877666555444 4499999999999765543
No 370
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=22.18 E-value=2.6e+02 Score=31.40 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=55.8
Q ss_pred ccchhHH-HHHhhhhhhc--CCCeeEEEeccHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHhcCCCCCce
Q psy1544 880 VSGKFEL-LDRILPKLKS--TGHRVLLFCQMTQLMNILEDYFSY----RGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYF 952 (1331)
Q Consensus 880 ~s~K~~~-L~~lL~~l~~--~g~KVLIFsq~~~~ld~L~~~L~~----~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~ 952 (1331)
.+||... +.-++..+.. .+.++||.+.....+..+...+.. .++.+..++|+.+..+....+.. ..
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~ 140 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-------AQ 140 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHH-------CS
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCC-------CC
Confidence 4788765 4444444332 456999999998887766665543 47899999999987766555542 22
Q ss_pred EEEeecccc-----ccccCCCCCCEEEEe
Q psy1544 953 IFVLSTRAG-----GLGLNLQTADTVIIF 976 (1331)
Q Consensus 953 v~LlST~ag-----geGLNL~~ad~VI~~ 976 (1331)
|++.+.... ...+++...+.||+=
T Consensus 141 i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 141 IVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 434332221 123456667777763
No 371
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=22.12 E-value=77 Score=38.21 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=26.9
Q ss_pred CCccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHH
Q psy1544 555 GKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALI 596 (1331)
Q Consensus 555 ~~LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li 596 (1331)
|.+-+.....+.+.+. .+.+.+++-++|+|||...-+++
T Consensus 243 G~~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 243 GTVPSGVLAYLWLAIE---HKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TSSCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHH
Confidence 4456666666665554 56677889999999997654443
No 372
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=22.12 E-value=1.4e+02 Score=35.57 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe----CCccHHHHHHHHHHHc
Q psy1544 562 IKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV----PLSTLSNWSLEFERWA 629 (1331)
Q Consensus 562 ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~----P~sll~qW~~E~~k~~ 629 (1331)
+.+|..|+-.-...+.+|+++ -|+|||..++..|.... ...-++|+| ..+.+..+.+++....
T Consensus 150 iraID~l~PigrGQR~~Ifg~-~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g 216 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGD-RQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHD 216 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEEC-SSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred eeecccccccccCCEEEEECC-CCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCC
Confidence 355555544333334455555 89999998776665432 223233444 2356677778887644
No 373
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=21.99 E-value=1.3e+02 Score=28.58 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=23.4
Q ss_pred ccCccEEEEeCCcccCC-cchHHHHHHHH--hccCCceeeeccCC
Q psy1544 675 KLHWKYMIIDEGHRMKN-HHCKLTHILNT--FYVAPHRLLLTGTP 716 (1331)
Q Consensus 675 ~~~~~~vIiDEaHrikn-~~sk~~~~l~~--~~~~~~rllLTgTP 716 (1331)
...+++||+|= .+.+ ....+.+.++. .......+++|+..
T Consensus 57 ~~~~dliilD~--~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDL--NLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECS--BCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeC--CCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 45689999993 2322 23344555555 22344578888864
No 374
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=21.97 E-value=1.1e+02 Score=35.34 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=38.3
Q ss_pred hhHHHHHhhhhhhcCCCeeEEEeccHHHHH------HHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 883 KFELLDRILPKLKSTGHRVLLFCQMTQLMN------ILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 883 K~~~L~~lL~~l~~~g~KVLIFsq~~~~ld------~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
-...+.++++..++.|--+++-+|....+. .....+...+.. .+.+ .+..++..+.+.|.
T Consensus 282 ~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~--i~l~-~~~~~~~~~~~~~~ 347 (392)
T 4ag6_A 282 AIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYK--LLLA-QGEKDLEAITTLMN 347 (392)
T ss_dssp HHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEE--EECS-CCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhh--heeC-CChhhHHHHHHHhC
Confidence 346678888888888888888899887543 234455544433 3333 45566777766675
No 375
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=21.93 E-value=84 Score=33.67 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=24.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
+|..-.-|.|||.+++.++..+...+ .++|+|=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g---~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLG---HDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 35566789999999999998886542 3477775
No 376
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=21.88 E-value=69 Score=30.27 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=30.9
Q ss_pred CCCeeEEEeccHHH--HHHHHHHHHhcCCeEEEEcCCCC
Q psy1544 897 TGHRVLLFCQMTQL--MNILEDYFSYRGFKYMRLDGTTK 933 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~--ld~L~~~L~~~g~~~~~idG~~~ 933 (1331)
.+..|||||..-.. .......|...|+++..++|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 45689999998665 67888899999999889999865
No 377
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=21.80 E-value=2.1e+02 Score=31.75 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=38.1
Q ss_pred CCcEEEEeCCccH-HHHHHHHHHHcCCCcEEEecCC--hhHHHHHHHHhhccCccEEEee
Q psy1544 606 NGPFLIIVPLSTL-SNWSLEFERWAPSVNVVAYKGS--PHLRKTLQAQMKASKFNVLLTT 662 (1331)
Q Consensus 606 ~~p~LIV~P~sll-~qW~~E~~k~~p~~~v~~~~g~--~~~r~~~~~~~~~~~~~VvItT 662 (1331)
.+++||.|+..-. ......|... +..+..++|. ...|.........+..+|+|+|
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 5679999998544 3344444432 5677888887 4556666666677889999998
No 378
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=21.75 E-value=1.1e+02 Score=34.72 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=24.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 578 gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
.+..---|.|||.+|++++..+... ..++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 4566778999999999998887654 23467766
No 379
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=21.70 E-value=1e+02 Score=44.82 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy1544 557 LKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLST 617 (1331)
Q Consensus 557 LrpyQ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sl 617 (1331)
..+++..-+-.+......+.+.+|..++|+|||.+.=.++..+-...+....+.+|-|.++
T Consensus 905 ~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 905 MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 3455555555566666778889999999999998755555444332222233556677755
No 380
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.59 E-value=1.2e+02 Score=27.95 Aligned_cols=45 Identities=9% Similarity=-0.107 Sum_probs=20.4
Q ss_pred CCCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhc
Q psy1544 897 TGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFN 945 (1331)
Q Consensus 897 ~g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn 945 (1331)
.|..|..++.....+..+ ....+.++.++-.+....-..++...+
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~ 70 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFR 70 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 344555444443333322 234456666665544433444444443
No 381
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=21.52 E-value=1.6e+02 Score=26.32 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=22.7
Q ss_pred cCccEEEEeCCcccCC-cchHHHHHHHHhccCCceeeeccCC
Q psy1544 676 LHWKYMIIDEGHRMKN-HHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 676 ~~~~~vIiDEaHrikn-~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
..+++||+|-. +.+ .+..+.+.++........+++|+..
T Consensus 44 ~~~dlvl~D~~--l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 44 GNYDLVILDIE--MPGISGLEVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp SCCSEEEECSC--CSSSCHHHHHHHHHHHCTTCCEEEEESCG
T ss_pred CCCCEEEEECC--CCCCCHHHHHHHHHccCCCCeEEEEECCc
Confidence 46899999943 222 2334455555543445678888763
No 382
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=21.34 E-value=91 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=28.6
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFK-YMRLDGTTK 933 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~-~~~idG~~~ 933 (1331)
..+..|+|||..-.........|...|+. +..+ |++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 45678999999877788888899999986 4455 7654
No 383
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=21.22 E-value=83 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=32.3
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCCe-EEEEcCCCCH
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGFK-YMRLDGTTKA 934 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~~-~~~idG~~~~ 934 (1331)
..+..|+|||..-.........|...|+. +..++|++..
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 45678999999877788888899999995 8899998653
No 384
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=21.07 E-value=82 Score=33.54 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=23.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV 613 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~ 613 (1331)
|...--|.|||.+|+.++..+... +.++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQK---GKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 455667999999999999888754 23477765
No 385
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=21.03 E-value=63 Score=32.50 Aligned_cols=25 Identities=32% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
....+|.-.+|+|||.++-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456788899999999887776655
No 386
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=20.92 E-value=72 Score=37.36 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCCccH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTL 618 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~sll 618 (1331)
..++++...+|+|||...-.++..++.. ..+++|+=|..-.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCCch
Confidence 4567888889999999765666666553 2457777777544
No 387
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=20.79 E-value=2.2e+02 Score=34.05 Aligned_cols=63 Identities=27% Similarity=0.246 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEe----CCccHHHHHHHHHHHc
Q psy1544 562 IKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIV----PLSTLSNWSLEFERWA 629 (1331)
Q Consensus 562 ~~gv~~l~~~~~~~~~gILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~----P~sll~qW~~E~~k~~ 629 (1331)
+.+|..|+-.-...+-+|+++ -|+|||..++..|... ....-++|+| ..+.+..+.++|....
T Consensus 150 ikaID~l~PigrGQR~~Ifg~-~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g 216 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGD-RQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHG 216 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-SSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHS
T ss_pred eeeeccccccccCCEEEeecC-CCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcC
Confidence 356766655444444456666 8999999876555432 2223233333 3366677777777654
No 388
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.69 E-value=47 Score=30.70 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=41.0
Q ss_pred CCeeEEEeccHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCC--CCCceEEEeeccccccccCCC--CCCEE
Q psy1544 898 GHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAP--DSEYFIFVLSTRAGGLGLNLQ--TADTV 973 (1331)
Q Consensus 898 g~KVLIFsq~~~~ld~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~--~~~~~v~LlST~aggeGLNL~--~ad~V 973 (1331)
|..|..+....+.+..+ ....+.++.++-.++...-..+++..+.. ...+.|++++......-...- +|+.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 44555555444333333 33456666666555444444444444322 234455555543322111100 1332
Q ss_pred EEeCCCCCccccccccccccccC
Q psy1544 974 IIFDSDWNPHQDLQAQDRAHRIG 996 (1331)
Q Consensus 974 I~~D~~wNp~~~~QaiGRa~RiG 996 (1331)
++--|+++....+++.++++-+
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC---
T ss_pred -heeCCCCHHHHHHHHHHhhccC
Confidence 2334566666666666655543
No 389
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.51 E-value=1.3e+02 Score=33.37 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=23.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy1544 579 ILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615 (1331)
Q Consensus 579 ILADemGlGKTi~ai~li~~l~~~~~~~~p~LIV~P~ 615 (1331)
++.-..|.|||..+..++..+... .+.++++.-.
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 455689999999888877766543 3446766643
No 390
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=20.50 E-value=1.1e+02 Score=36.17 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=20.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q psy1544 575 NLNGILADEMGLGKTIQTIALITYL 599 (1331)
Q Consensus 575 ~~~gILADemGlGKTi~ai~li~~l 599 (1331)
..+.+|..++|+|||..+-+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 3567899999999999887776654
No 391
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.49 E-value=2.1e+02 Score=26.08 Aligned_cols=81 Identities=9% Similarity=0.044 Sum_probs=39.0
Q ss_pred cEEEecCChhHHHHHHHHhhccCccEEEee-HHHHHhccCccccc-CccEEEEeCCcccCCcchHHHHHHHHhccCCcee
Q psy1544 633 NVVAYKGSPHLRKTLQAQMKASKFNVLLTT-YEYVIKDKGPLAKL-HWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRL 710 (1331)
Q Consensus 633 ~v~~~~g~~~~r~~~~~~~~~~~~~VvItT-ye~l~~~~~~l~~~-~~~~vIiDEaHrikn~~sk~~~~l~~~~~~~~rl 710 (1331)
+++++......+..+...+...++.|+.++ ..... ..+... .+++||+|-.---......+.+.++........+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~---~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 7 TILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAI---EMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHH---HHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHH---HHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 444555555444444444444445544322 11111 122233 6899999953210012334455555544445678
Q ss_pred eeccCC
Q psy1544 711 LLTGTP 716 (1331)
Q Consensus 711 lLTgTP 716 (1331)
++|+..
T Consensus 84 ~~s~~~ 89 (132)
T 2rdm_A 84 YISGHA 89 (132)
T ss_dssp EEESSC
T ss_pred EEeCCc
Confidence 888865
No 392
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=20.46 E-value=1.5e+02 Score=26.23 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=39.3
Q ss_pred eeEEEecc-HHHH------HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHhcCCCCCceEEEe
Q psy1544 900 RVLLFCQM-TQLM------NILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVL 956 (1331)
Q Consensus 900 KVLIFsq~-~~~l------d~L~~~L~~~g~~~~~idG~~~~~eR~~~i~~Fn~~~~~~~v~Ll 956 (1331)
+|+||+.. .... .....+|...|+.|..++-....+.|..+......+...+-++++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 57788653 3334 688889999999999999888877787777776422223434444
No 393
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.39 E-value=1.7e+02 Score=27.15 Aligned_cols=40 Identities=8% Similarity=-0.083 Sum_probs=22.3
Q ss_pred cCccEEEEeCCcccCCcchHHHHHHHH--hccCCceeeeccCC
Q psy1544 676 LHWKYMIIDEGHRMKNHHCKLTHILNT--FYVAPHRLLLTGTP 716 (1331)
Q Consensus 676 ~~~~~vIiDEaHrikn~~sk~~~~l~~--~~~~~~rllLTgTP 716 (1331)
..+++||+|-..- ......+.+.++. .......+++|+..
T Consensus 50 ~~~dlii~d~~l~-~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 50 GFSGVVLLDIMMP-GMDGWDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp CCCEEEEEESCCS-SSCHHHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHhhcccCCCCEEEEECCC
Confidence 4579999994322 1223344555554 22344567788764
No 394
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=20.36 E-value=81 Score=30.80 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=30.0
Q ss_pred cCCCeeEEEeccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy1544 896 STGHRVLLFCQMTQLMNILEDYFSYRGF-KYMRLDGTTK 933 (1331)
Q Consensus 896 ~~g~KVLIFsq~~~~ld~L~~~L~~~g~-~~~~idG~~~ 933 (1331)
..+..|||||..-.........|...|+ ++..++|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4457899999987667788888999999 4899999975
No 395
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=20.09 E-value=1.6e+02 Score=28.69 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=22.5
Q ss_pred ccCccEEEEeCCcccCC-cchHHHHHHHHhccCCceeeeccCC
Q psy1544 675 KLHWKYMIIDEGHRMKN-HHCKLTHILNTFYVAPHRLLLTGTP 716 (1331)
Q Consensus 675 ~~~~~~vIiDEaHrikn-~~sk~~~~l~~~~~~~~rllLTgTP 716 (1331)
...+++||+|= .+.+ ....+.+.++.... ...+++|+..
T Consensus 69 ~~~~dlvilD~--~l~~~~g~~l~~~lr~~~~-~~ii~~s~~~ 108 (164)
T 3t8y_A 69 ELKPDVITMDI--EMPNLNGIEALKLIMKKAP-TRVIMVSSLT 108 (164)
T ss_dssp HHCCSEEEECS--SCSSSCHHHHHHHHHHHSC-CEEEEEESSC
T ss_pred cCCCCEEEEeC--CCCCCCHHHHHHHHHhcCC-ceEEEEecCC
Confidence 34689999993 2322 23344555555433 5567777754
Done!