RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1544
(1331 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 162 bits (409), Expect = 4e-44
Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 13/305 (4%)
Query: 790 QLPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLC 849
LP K+E ++ C+++ LQK LY+ + + + Q + + +++I L+KLC
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLC 62
Query: 850 NHPFMFQNIEEKFSDHVGGS------GIVSGPDLYRVSGKFELLDRILPKLKS-TGHRVL 902
NHP + + G+ + ++SGK +LD IL ++ T +V+
Sbjct: 63 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVV 122
Query: 903 LFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGG 962
L TQ +++ E R + Y+RLDGT + R ++++FN P S FIF+LS++AGG
Sbjct: 123 LVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGG 182
Query: 963 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARY 1022
GLNL A+ +++FD DWNP D QA R R GQK + RL++ ++EE+IL +
Sbjct: 183 CGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAH 242
Query: 1023 KLNMDEKVIQAGMFDQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEE 1082
K + V+ ++ + L + L++ D + + + ++
Sbjct: 243 KKALSSCVVDEEQDVERHFSLGELRELFS-LNEKTLSDTHDRFRCRRCVNGRQVRPPPDD 301
Query: 1083 FQTYQ 1087
Sbjct: 302 SDCTC 306
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 157 bits (396), Expect = 7e-44
Identities = 76/242 (31%), Positives = 126/242 (52%), Gaps = 22/242 (9%)
Query: 553 VNGKLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLII 612
+ L+ YQIKG WM + LAD+MGLGKT+QTIA+ + ++ ++ P L+I
Sbjct: 9 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELT-PSLVI 67
Query: 613 VPLSTLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGP 672
PLS L NW E ++AP + + ++K ++++LTTY +++D
Sbjct: 68 CPLSVLKNWEEELSKFAPHLRFAVFHEDRS-------KIKLEDYDIILTTYAVLLRDT-R 119
Query: 673 LAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLL 732
L ++ WKY++IDE +KN K+ + + +R+ LTGTP++NK+ +LW+++ FL
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELK-SKYRIALTGTPIENKVDDLWSIMTFLN 178
Query: 733 PSIFKSVSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE--VESQ 790
P + S S F+ F P L ++ PF+LRR K + + +
Sbjct: 179 PGLLGSYSEFKSKFATPIKKGDNMA----------KEELKAIISPFILRRTKYDKAIIND 228
Query: 791 LP 792
LP
Sbjct: 229 LP 230
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 148 bits (373), Expect = 6e-40
Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 19/247 (7%)
Query: 554 NGKLKEYQIKGLEWMVSL-----FNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGP 608
+ L+ +Q +G++++ N+ I+ADEMGLGKT+Q I LI L+++ P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 609 ----FLIIVPLSTLSNWSLEFERWAP-SVNVVAYKGSP------HLRKTLQAQMKASKFN 657
+++ P S + NW E +W V VA G L + Q
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 658 VLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTPL 717
+L+ +YE L K +I DEGHR+KN + LN+ A R+L++GTP+
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMN-AQRRVLISGTPI 231
Query: 718 QNKLPELWALLNFLLPSIFKSVSTFEQWFNAPFATTGEK--VELNEEETILIIRRLHKVL 775
QN L E ++L++F+ I + F++ F P + + + ++ L ++
Sbjct: 232 QNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIV 291
Query: 776 RPFLLRR 782
L+RR
Sbjct: 292 NRCLIRR 298
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 107 bits (266), Expect = 2e-26
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 22/242 (9%)
Query: 794 KVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNHPF 853
K+E + C+++ Q +Y+ D K +++T+++L+++ +HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIK----RKGMILSTLLKLKQIVDHPA 56
Query: 854 MFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNI 913
+ + E+ K I+ + G ++ +F Q + I
Sbjct: 57 LLKGGEQSVRRSG----------------KMIRTMEIIEEALDEGDKIAIFTQFVDMGKI 100
Query: 914 LEDYFSYRGF-KYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADT 972
+ + + L G ++R D++ KF S FI + S +AGG G+NL +A+
Sbjct: 101 IRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSANR 159
Query: 973 VIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ 1032
VI FD WNP + QA DR +RIGQ V V +L++V ++EE+I +K ++ + +I
Sbjct: 160 VIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIIS 219
Query: 1033 AG 1034
+G
Sbjct: 220 SG 221
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 87.0 bits (215), Expect = 2e-20
Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 1201 KKRKKEKEKDREKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVI 1260
+ K + R L L+ I+ + ++ PF + K + DYY++I
Sbjct: 10 NRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNT------YPFHTPVNAKVVKDYYKII 63
Query: 1261 DRPMDIKKILGRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTK 1318
RPMD++ + + Y S +E ++ + + +N+ YN + + S + + +
Sbjct: 64 TRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDE 121
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 88.4 bits (218), Expect = 1e-19
Identities = 44/294 (14%), Positives = 100/294 (34%), Gaps = 41/294 (13%)
Query: 755 EKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYIIKCDMSGLQKVLYRHM 814
+V+L E + + L ++LR L + + L I K ++ +++ M
Sbjct: 7 VRVDLPEIYKE-VRKLLREMLRDALKPLAETGL---LESSSPDIPKKEVLRAGQIINEEM 62
Query: 815 HTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCNH------PFMFQNIEEKFSDHVGG 868
G+ + + + L ++ + EE +
Sbjct: 63 -------AKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA 115
Query: 869 S--------------GIVSGPDLYRVSGKFELLDRILPKL--KSTGHRVLLFCQMTQLMN 912
S +V ++ K + L I+ + + ++++F +
Sbjct: 116 SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAK 175
Query: 913 ILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFI-----FVLSTRAGGLGLNL 967
+ + G K R G E+ L ++ + F +++T G GL++
Sbjct: 176 KIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDV 235
Query: 968 QTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLMTVNSVEERILAAAR 1021
D V+ ++ + + +Q R R G+ RV+ LM + +E ++R
Sbjct: 236 PEVDLVVFYEPVPSAIRSIQ---RRGRTGRHMPGRVIILMAKGTRDEAYYWSSR 286
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 79.7 bits (196), Expect = 2e-18
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 1217 KLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDG 1276
+L TLK ++ + + + PF++ + E PDYYEVI P+D+K + R+
Sbjct: 2 QLYTTLKNLLAQIKSHPSA------WPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSR 55
Query: 1277 KYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTK 1318
Y + D + + N + YN S + LE F
Sbjct: 56 YYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYF 97
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 79.7 bits (196), Expect = 3e-18
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 1211 REKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKIL 1270
+D +L TLK I++ V + + PF++ R E P YYEVI PMD+K +
Sbjct: 7 EPRDPDQLYSTLKSILQQVKSHQSA------WPFMEPVKRTEAPGYYEVIRFPMDLKTMS 60
Query: 1271 GRIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTK 1318
R+++ Y S D + + N + YN S ++ + +LE F
Sbjct: 61 ERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFS 108
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 78.5 bits (193), Expect = 1e-17
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
Query: 1212 EKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILG 1271
+ DQ L I+ + S PF ++K +PDYY+VI PMD++ I
Sbjct: 4 DDDQVAFSFILDNIVTQKMMAVPD-----SWPFHHPVNKKFVPDYYKVIVNPMDLETIRK 58
Query: 1272 RIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVESGEDPDE 1331
I KY S + D + N+ YN S + + + +V + + E
Sbjct: 59 NISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 118
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 111
Score = 75.8 bits (186), Expect = 6e-17
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 1218 LKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILGRIEDGK 1277
++ I+ + + + PF++ +++E+PDYY+ I PMD+ + ++E K
Sbjct: 4 HDAAIQNILTELQNHAAA------WPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNK 57
Query: 1278 YSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVE 1324
Y +++ D + + N ++YN E + ++ + LE F + +
Sbjct: 58 YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIP 104
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 114
Score = 75.8 bits (186), Expect = 6e-17
Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 1214 DQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKL--PSRKELPDYYEVIDRPMDIKKILG 1271
+L++ L + + + S PF + P +PDY++++ PMD+ I
Sbjct: 3 KPEELRQALMPTLEALYRQDPE-----SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKR 57
Query: 1272 RIEDGKYSSVDELQKDFKTLCRNAQIYNEELSLIHEDSVVLESVFTKARQRVES 1325
+++ G+Y + D + NA +YN + S +++ L VF + V
Sbjct: 58 KLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 111
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 200
Score = 66.1 bits (160), Expect = 1e-12
Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 26/222 (11%)
Query: 791 LPDKVEYIIKCDMSGLQKVLYRHMHTKGILLTDGSEKGKQGKGGAKALMNTIVQLRKLCN 850
L I ++ ++V Y + KQ + K+
Sbjct: 3 LAKYTIKRIFVPLAEDERVEYEKR----------EKVYKQFLRARGITLRRAEDFNKIVM 52
Query: 851 HPFMFQNIEEKFSDHVGGSGIVSGPDLYRVSGKFELLDRILPKLKSTGHRVLLFCQMTQL 910
+ E I K L IL + + ++++F + +L
Sbjct: 53 ASGYDERAYEALRAWEEARRIAFNS-----KNKIRKLREILERHR--KDKIIIFTRHNEL 105
Query: 911 MNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTA 970
+ Y + F + T E+R ++L+ F + G ++ A
Sbjct: 106 V-----YRISKVFLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI---DVPDA 157
Query: 971 DTVIIFDSDWNPHQDLQAQDRAHRIGQ-KNEVRVLRLMTVNS 1011
+ +I + + +Q R R + K E + L++ +
Sbjct: 158 NVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 57.6 bits (139), Expect = 8e-11
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 443 DETSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDE 493
D + + + V +GK + G AP L +W++++P + V D +
Sbjct: 9 DINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTD 59
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 56.4 bits (136), Expect = 9e-11
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 449 TDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEK 502
+ I V G +L GEDAP A L+ W+Q HP + V ED +K
Sbjct: 5 LETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFLAYMEDRRKQK 58
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 55.2 bits (133), Expect = 2e-10
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 449 TDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEV 487
D I V + G L GEDAP L +W++ HP + V
Sbjct: 3 PDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 41
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 58.0 bits (139), Expect = 9e-10
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 25/161 (15%)
Query: 556 KLKEYQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPL 615
L++YQ K LE + + G + G GKT +A I L +++ L
Sbjct: 70 SLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINELSTPT-----LIVVPTL 120
Query: 616 STLSNWSLEFERWAPSVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAK 675
+ W + + ++TY+ + L
Sbjct: 121 ALAEQWKERLGIFGEEYVGEFS------------GRIKELKPLTVSTYDSAYVNAEKLGN 168
Query: 676 LHWKYMIIDEGHRMKNHHCKLTHILNTFYVAPHRLLLTGTP 716
+ +I DE H + I +AP RL LT T
Sbjct: 169 -RFMLLIFDEVHHLPAE--SYVQIAQMS-IAPFRLGLTATF 205
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 43.0 bits (100), Expect = 1e-04
Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 13/221 (5%)
Query: 518 KGEDDEYNKNAMEEATYYSIAHTVHEIVTEQASILVNGKLKEYQIKGLEWMVSLFNNNLN 577
+ + E +++ N +++ + + L N
Sbjct: 73 DNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRI 132
Query: 578 GILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSN-WSLEFERWAPSVNVVA 636
L G +A + K+ IIVP + L+ + +F + + +
Sbjct: 133 LNLPTSAGRSLIQALLARYYLENYEGKIL----IIVPTTALTTQMADDFVDYRLFSHAMI 188
Query: 637 YKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMKNHHCKL 696
K K + V++ T++ V+K + M+ DE H +
Sbjct: 189 KKIGGGASK---DDKYKNDAPVVVGTWQTVVKQPKEWFS-QFGMMMNDECHLATGK--SI 242
Query: 697 THILNTFYVAPHRLLLTGTPLQNKLPELWALLNFLLPSIFK 737
+ I++ + L+G+ K + + IFK
Sbjct: 243 SSIISGLNNCMFKFGLSGSLRDGKANIMQ--YVGMFGEIFK 281
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 40.7 bits (94), Expect = 3e-04
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 10/150 (6%)
Query: 883 KFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942
+FE L R+L K+ L+FC+ + L GFK + G R +++
Sbjct: 16 RFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIR 72
Query: 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 1002
F I +T G+++ + VI + NP + R R G+K +
Sbjct: 73 LFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI 129
Query: 1003 VLRLMTVNSVEERILAAARYKLNMDEKVIQ 1032
+ +N E + L + + K ++
Sbjct: 130 SI----INRREYKKLRYIERAMKLKIKKLK 155
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 13/148 (8%)
Query: 571 LFNNNLNGILADEMGLGKTIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAP 630
+ + +L G GKT L L E + L++ P + + E
Sbjct: 3 MLKKGMTTVLDFHPGAGKT--RRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD 60
Query: 631 SVNVVAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRMK 690
+ A + + + P ++W+ +I+DE H +
Sbjct: 61 ---------VKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD 111
Query: 691 NHHCKLTHILNTF--YVAPHRLLLTGTP 716
+L+T TP
Sbjct: 112 PASIAARGWAAHRARANESATILMTATP 139
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 36.7 bits (84), Expect = 0.025
Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 27/233 (11%)
Query: 1080 EEEFQTYQRIDAERRKEQGKKSRLIEVSELPDWLIKEDEEIEQWAFEAKEEEKALHMGRG 1139
E+ I+ K S + + +I EDEEI Q F +EE +
Sbjct: 1128 EQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQ 1187
Query: 1140 SRQRKQVDYTDSLTEKEWLKAIDDG--------VEYDDEEEEEEEEVRSKRKGKRRKKTE 1191
S +++ + + L G + E+ +E R R K+
Sbjct: 1188 SPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSL 1247
Query: 1192 DDDEEPSTSKKRKKEKEKDREKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRK 1251
D + E ++ K+ + + + ++ I RVV+ D + ++K P
Sbjct: 1248 DAETEA---EEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWV 1304
Query: 1252 ELPDYY---EVIDRP------------MDIKKILGRIEDGKYSSVDELQKDFK 1289
D EV+ P +DI ++LG IE G+ + E+
Sbjct: 1305 LETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLG-IEAGRAALYKEVYNVIA 1356
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 394
Score = 35.9 bits (82), Expect = 0.033
Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 15/147 (10%)
Query: 291 EKLEKQQKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEK 350
E E Q + ER ++ E++ EY + +AR++ + V Y E
Sbjct: 214 ESFESQFLADTERFYTRESTEFLQQ-----NPVTEYMKKAEARLLEEQRRVQVY--LHES 266
Query: 351 EQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKD---KRLAFLLSQTDEYISNLTQMVKE 407
Q + + E+ + + + ++ L+D K+ R+ L+S+ + + L ++++
Sbjct: 267 TQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLET 326
Query: 408 HKMEQ-----KKKQDEESKKRKQSVKQ 429
H Q +K + K V+
Sbjct: 327 HIHNQGLAAIEKCGEAALNDPKMYVQT 353
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 34.4 bits (78), Expect = 0.051
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 885 ELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLKKF 944
+L+ I + R L+ ++ L DY G K L K +R ++++
Sbjct: 19 DLIGEIR-ERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDL 77
Query: 945 NAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSD 979
+ + GL++ V I D+D
Sbjct: 78 RLGKYDVLV---GINLLREGLDIPEVSLVAILDAD 109
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic
subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 227
Score = 34.5 bits (78), Expect = 0.061
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1159 KAIDDGVEYDDEEEEEEEEVRSKRKGKR 1186
+D+ + +D E E ++ E+R KR G +
Sbjct: 199 SGLDEFINFDPEVERQQTELRHKRTGGK 226
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 33.7 bits (77), Expect = 0.12
Identities = 18/129 (13%), Positives = 32/129 (24%), Gaps = 16/129 (12%)
Query: 878 YRVSGKFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDR 937
+G+ + +P G R L+FC + + L G +
Sbjct: 16 LSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVI 75
Query: 938 G----------DLLKKFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQ 987
D L D + I + + +L T+ +
Sbjct: 76 PTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDA----- 130
Query: 988 AQDRAHRIG 996
R R G
Sbjct: 131 -VSRTQRRG 138
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 32.2 bits (73), Expect = 0.19
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 471 LAAHLKQWIQDHPGWEVVADSDEENEDEDSEKSKEKT 507
L L WI GW + E++ + +E
Sbjct: 129 LETRLADWIHSSGGWAEFTALYGDGALEEARRLREGN 165
>d1pf5a_ d.79.1.1 (A:) Hypothetical protein YjgH {Escherichia coli
[TaxId: 562]}
Length = 130
Score = 31.6 bits (71), Expect = 0.23
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 5/94 (5%)
Query: 1037 DQKSTGSERHQFLQTILHQDDEEDEEENAVPDDETVNQMLARSEEEFQTYQRIDAERRKE 1096
D + Q + D V E +F+ + E
Sbjct: 41 DGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSA 100
Query: 1097 QGKKSR-LIEVSELPDWLIKEDEEIEQWAFEAKE 1129
+ + V+ L + EI+ A ++
Sbjct: 101 PPYPNWTAVGVTWLAGFDF----EIKVIARIPEQ 130
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 30.7 bits (69), Expect = 0.54
Identities = 15/65 (23%), Positives = 16/65 (24%), Gaps = 5/65 (7%)
Query: 8 PNPPPPQQQQPPLNVGQLPMGAPGSGPPGSPGPSPGQAPGQ-----NPQENLTALQRAID 62
P V Q A P P Q QE LTA A
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASA 61
Query: 63 SMKEQ 67
+EQ
Sbjct: 62 PPQEQ 66
Score = 30.7 bits (69), Expect = 0.56
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 118 PQLAMGVQGKRMEGVP-----SGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPPQ- 171
P + + VP +G + P L+ + QP + PL
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASA 61
Query: 172 -PHQQQ 176
P +Q+
Sbjct: 62 PPQEQK 67
Score = 30.3 bits (68), Expect = 0.64
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 123 GVQGKRMEGVPSGPQMPPMSLHGPMPMPPSQPMPNQAQPMPLQQQPPPQPHQQQGHISSQ 182
G G P+ +P + P AQP QQP Q+ +S
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAGVRNPQQHL---NAQPQVTMQQPAVHVQGQEPLTASM 57
Query: 183 I 183
+
Sbjct: 58 L 58
Score = 27.2 bits (60), Expect = 7.9
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 3 NSSTSPNPPPPQQQQPPLNVGQLPMGAPGSGP 34
++ NP QP + + Q + G P
Sbjct: 21 YAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 52
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.6 bits (71), Expect = 0.56
Identities = 20/172 (11%), Positives = 62/172 (36%)
Query: 202 ILQERENRVALNIERRIEELNGSLTSTLPEHLRVKAEIELRALKVLNFQRQLRAEVIACA 261
+LQ + + ++ I G + + +K + K + + L+ + +
Sbjct: 127 LLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKE 186
Query: 262 RRDTTLETAVNVKAYKRTKRQGLKEARATEKLEKQQKVEAERKKRQKHQEYITTVLQHCK 321
+ K + + + + + + E +RK Q ++ + +H K
Sbjct: 187 SMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLK 246
Query: 322 DFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEE 373
E N++ ++++ + + +++ KE + E M+ + + +
Sbjct: 247 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second
domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 31.4 bits (71), Expect = 0.81
Identities = 6/62 (9%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 1165 VEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKRKKEKEKDREKDQAKLKKTLKK 1224
D++ +E E+ + +DE ++ ++ + + ++
Sbjct: 214 RRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLR-ESLLMAMCIRD 272
Query: 1225 IM 1226
+M
Sbjct: 273 MM 274
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229
{Pseudomonas syringae [TaxId: 317]}
Length = 148
Score = 29.5 bits (66), Expect = 1.6
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 328 RNNQA----RIMRLNKAVMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKK 383
RN QA R M YH++ + +I K A D + D K
Sbjct: 29 RNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD--SHYHDAKA 86
Query: 384 DKRLAFLLSQTDEYISNLTQMVKEHKMEQKKKQDEESKKRKQS 426
+ ++ ++ ++Q+ + ++ +K S
Sbjct: 87 TTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQLPLVQKGS 129
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 29.1 bits (65), Expect = 1.9
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 137 QMPPMSLHGPMPMPPSQPM--PNQAQPMPLQQQPPPQPHQ 174
Q+ P + P+P P P P P PPP
Sbjct: 92 QVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEP 131
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 28.8 bits (63), Expect = 2.6
Identities = 16/147 (10%), Positives = 44/147 (29%), Gaps = 14/147 (9%)
Query: 395 DEYISNLTQMVKEHKMEQKKKQDEESKKRKQSVKQKLMDTDGKVTLD----------QDE 444
++ + + + +Q ES ++ ++L + + L Q
Sbjct: 15 AAFVGHGLATEQGA--VARFRQKLESNGLPSALTERLQRIERRYRLLVAGEMWCPDCQIN 72
Query: 445 TSQLTDMHISVREISSGKVLKGEDAPLAAHLKQWIQDHPGWEVVADSDEENEDEDSEKSK 504
+ L I + KG ++ + +V DEE +
Sbjct: 73 LAALDFAQRLQPNIELAIISKGRAEDDLR--QRLALERIAIPLVLVLDEEFNLLGRFVER 130
Query: 505 EKTSGENENKEKNKGEDDEYNKNAMEE 531
+ + + + +Y ++A+ +
Sbjct: 131 PQAVLDGGPQALAAYKAGDYLEHAIGD 157
>d1ohua_ f.1.4.1 (A:) Apoptosis regulator ced-9 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 172
Score = 28.7 bits (64), Expect = 3.0
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 471 LAAHLK-QWIQDHPGW----EVVADSDEENEDEDSEK 502
+ ++ W + + W + E+ E ++EK
Sbjct: 136 IKTRIRNNWKEHNRSWDDFMTLGKQMKEDYERAEAEK 172
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.5 bits (64), Expect = 4.4
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 321 KDF-----KEYHRNNQARIMRLNKA---VMNYHANAEKEQKKEQERIEKERMRRLMAEDE 372
DF + N I ++ M + +KEQKK+ EK+++R + E
Sbjct: 68 NDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFE 127
Query: 373 EGYRK-LIDQKKDK 385
E Y+ +D ++++
Sbjct: 128 EDYKFCELDGRREQ 141
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 4.8
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 321 KDF-KEYHRNNQARIMRLNKA---VMNYHANAEKEQKKEQERIEKERMRRLMAEDEEGYR 376
KD+ KE + I L+K M+ + A+ E +K+ + EK +++ + + Y
Sbjct: 80 KDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
Query: 377 K-LIDQKKDK 385
++D K++
Sbjct: 140 FCIMDNHKER 149
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.1 bits (61), Expect = 4.9
Identities = 24/149 (16%), Positives = 53/149 (35%), Gaps = 8/149 (5%)
Query: 883 KFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942
K L +L L+ ++V++F + Q L + F + + E+R +
Sbjct: 14 KNRKLFDLLDVLE--FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 71
Query: 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 1002
+F + T G G++++ + +D + L RA R G K
Sbjct: 72 QFKDFQRRILVA---TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA- 127
Query: 1003 VLRLMTVNSVEERILAAARYKLNMDEKVI 1031
+ + +IL + + ++ +
Sbjct: 128 --ITFVSDENDAKILNDVQDRFEVNISEL 154
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 28.3 bits (62), Expect = 5.9
Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 9/149 (6%)
Query: 1161 IDDGVEYDDEEEEEEEEVRSKRKGKRRKKTEDDDEEPSTSKKR---------KKEKEKDR 1211
I V+ + EE+ + + +D+DE+ + +
Sbjct: 50 ITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKF 109
Query: 1212 EKDQAKLKKTLKKIMRVVIKYTDSDGRVLSEPFIKLPSRKELPDYYEVIDRPMDIKKILG 1271
+ +A+ T I + + +L + R + +++ + +
Sbjct: 110 AELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR 169
Query: 1272 RIEDGKYSSVDELQKDFKTLCRNAQIYNE 1300
E E K K NE
Sbjct: 170 TQERLIMKLCVEQCKMPKKNFITLFTGNE 198
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 28.3 bits (62), Expect = 6.0
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 12/132 (9%)
Query: 577 NGILADEMGLGK-TIQTIALITYLMEKKKVNGPFLIIVPLSTLSNWSLEFERWAPSVNV- 634
+ G+GK + + ++ K+ F + + + ++A V
Sbjct: 60 SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVI---QAAETIRKYAEKAGVG 116
Query: 635 -----VAYKGSPHLRKTLQAQMKASKFNVLLTTYEYVIKDKGPLAKLHWKYMIIDEGHRM 689
Y G R+ F +++TT +++ K L ++ +D+ +
Sbjct: 117 TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHF--DFIFVDDVDAI 174
Query: 690 KNHHCKLTHILN 701
+ +L+
Sbjct: 175 LKASKNVDKLLH 186
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431
{Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 26.1 bits (58), Expect = 6.0
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 526 KNAMEEATYYSIAHTVHEI----VTEQASILVNGKLKEYQIK 563
+ A+ A T+ + V E + +KEYQ+
Sbjct: 22 QAALARA-----RKTLRHLDWFEVKEIRGTIGEAGVKEYQVV 58
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 64
Score = 26.1 bits (58), Expect = 6.1
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 526 KNAMEEATYYSIAHTVHEI----VTEQASILVNGKLKEYQIK 563
+A++ A T+ + V +Q + + + YQ +
Sbjct: 20 DDAIDRA-----EDTLDNVVWAEVVDQGVEIGAVEERTYQTE 56
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 146
Score = 27.5 bits (61), Expect = 6.2
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 471 LAAHLKQWIQDHPGWE 486
A QW + GW
Sbjct: 120 YEAIGPQWFRARGGWR 135
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.6 bits (60), Expect = 8.4
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 883 KFELLDRILPKLKSTGHRVLLFCQMTQLMNILEDYFSYRGFKYMRLDGTTKAEDRGDLLK 942
KF+ L + L T + ++FC + ++ L + F + G ++R ++K
Sbjct: 21 KFDTLCDLYDTLTIT--QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 78
Query: 943 KFNAPDSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 1001
+F S ++ST GL++ +I +D N + R+ R G+K
Sbjct: 79 EFR---SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA 134
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 196
Score = 27.6 bits (61), Expect = 9.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 471 LAAHLKQWIQDHPGWE 486
L HL+ WIQ++ GW+
Sbjct: 174 LNDHLEPWIQENGGWD 189
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 27.2 bits (60), Expect = 9.5
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 297 QKVEAERKKRQKHQEYITTVLQHCKDFKEYHRNNQARIMRLNKAVMNYHANAEKEQKKEQ 356
++ ER++ Q ++ K RN + + M + E E + +
Sbjct: 102 PQLTEERRRELVKQ-----AKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAE 156
Query: 357 ERIEK 361
+ ++K
Sbjct: 157 KDLDK 161
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Length = 343
Score = 27.7 bits (61), Expect = 9.5
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 29 APGSGPPGSPGPSPGQAPGQNPQENLTALQRAIDSMKEQGLEEDPRYQKLIEMKANRTEI 88
G G PG + P NP ++ AL +A + +G++E +IE+ R
Sbjct: 22 KTVKGSKGGPGSAVSPYPTFNPSSDVEALHKA---ITVKGVDE----ATIIEILTKR--- 71
Query: 89 KHAFTSAQVQQLR 101
T+AQ QQ++
Sbjct: 72 ----TNAQRQQIK 80
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo
sapiens) [TaxId: 9606]}
Length = 192
Score = 27.2 bits (60), Expect = 9.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 471 LAAHLKQWIQDHPGWE 486
L L WIQD GW+
Sbjct: 144 LRERLLGWIQDQGGWD 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.370
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,908,851
Number of extensions: 245889
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 106
Length of query: 1331
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1235
Effective length of database: 1,089,516
Effective search space: 1345552260
Effective search space used: 1345552260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.8 bits)