BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15440
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
           From Arabidopsis
          Length = 102

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 2   QISRRDASRAFATFTVTPGKDEYD---DLSDLNPAEWESVREWEEQLDSKYTYIGKLL 56
             + +DASRA    +    K+E D    L  L   E  ++ +WE + ++KY  +G+++
Sbjct: 48  MFAGKDASRALGKMS----KNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101


>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis Thaliana
           Has A Cytochrome B5 Like Fold
          Length = 109

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 2   QISRRDASRAFATFTVTPGKDEYD---DLSDLNPAEWESVREWEEQLDSKYTYIGKLL 56
             + +DASRA    +    K+E D    L  L   E  ++ +WE + ++KY  +G+++
Sbjct: 55  MFAGKDASRALGKMS----KNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108


>pdb|2F8S|A Chain A, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
 pdb|2F8S|B Chain B, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
 pdb|2F8T|A Chain A, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
 pdb|2F8T|B Chain B, Crystal Structure Of Aa-Ago With Externally-Bound Sirna
 pdb|2NUB|A Chain A, Structure Of Aquifex Aeolicus Argonuate
          Length = 706

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 45  LDSKYTYIGKLLKPGESHINYEDEEKGSI 73
           L+  YTY   +LKP  ++ N EDEE+  +
Sbjct: 244 LEKGYTYPATILKPVLTYENLEDEERNEV 272


>pdb|1YVU|A Chain A, Crystal Structure Of A. Aeolicus Argonaute
          Length = 706

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 45  LDSKYTYIGKLLKPGESHINYEDEEKGSI 73
           L+  YTY   +LKP  ++ N EDEE+  +
Sbjct: 244 LEKGYTYPATILKPVLTYENLEDEERNEV 272


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,793,993
Number of Sequences: 62578
Number of extensions: 106974
Number of successful extensions: 261
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 10
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)