Query psy15440
Match_columns 79
No_of_seqs 107 out of 526
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:10:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j03_A Putative steroid bindin 99.8 2.2E-20 7.6E-25 120.0 4.7 54 2-56 48-101 (102)
2 1wy1_A Hypothetical protein PH 73.7 1.9 6.5E-05 29.2 2.3 34 29-63 78-111 (172)
3 1cxy_A Cytochrome B5; helix, b 71.8 0.77 2.6E-05 27.6 -0.1 16 2-17 51-66 (90)
4 1x3x_A Cytochrome B5; hemoprot 71.3 0.8 2.7E-05 27.0 -0.1 11 2-12 46-56 (82)
5 3ner_A Cytochrome B5 type B; h 70.2 0.69 2.3E-05 28.2 -0.6 13 2-14 53-65 (92)
6 3lf5_A Cytochrome B5 reductase 69.9 0.65 2.2E-05 28.0 -0.7 13 2-14 49-61 (88)
7 1cyo_A Cytochrome B5; electron 68.3 0.96 3.3E-05 27.4 -0.2 13 2-14 48-60 (93)
8 2keo_A Probable E3 ubiquitin-p 68.3 0.91 3.1E-05 28.8 -0.3 13 2-14 67-79 (112)
9 2ibj_A Cytochrome B5, CYTB5; F 67.9 0.98 3.4E-05 26.9 -0.2 13 2-14 50-62 (88)
10 1woz_A 177AA long conserved hy 64.8 3.9 0.00013 27.8 2.3 35 29-63 76-110 (177)
11 1hko_A Cytochrome B5; electron 64.8 1 3.5E-05 28.0 -0.6 13 2-14 52-64 (104)
12 2g2d_A ATP:cobalamin adenosylt 64.6 3 0.0001 28.7 1.7 36 28-63 90-125 (193)
13 1rty_A YVQK protein; all alpha 64.2 3.5 0.00012 28.3 2.1 35 29-63 84-118 (193)
14 3ci3_A Cobalamin adenosyltrans 62.8 3.7 0.00013 28.3 1.9 35 29-63 92-126 (194)
15 2ah6_A BH1595, unknown conserv 62.0 3.1 0.0001 29.1 1.4 35 29-63 97-131 (208)
16 1nog_A Conserved hypothetical 61.3 3.2 0.00011 28.2 1.4 35 29-63 77-111 (177)
17 2idx_A COB(I)yrinic acid A,C-d 59.1 3.7 0.00013 28.3 1.4 35 29-63 90-124 (196)
18 1wvt_A Hypothetical protein ST 58.5 3.7 0.00013 27.8 1.3 35 29-63 74-108 (172)
19 2nt8_A Cobalamin adenosyltrans 54.5 4.7 0.00016 28.4 1.3 35 29-63 121-155 (223)
20 1k61_A Mating-type protein alp 48.9 17 0.00057 19.4 2.8 23 29-51 4-27 (60)
21 2dmn_A Homeobox protein TGIF2L 47.4 13 0.00044 21.6 2.3 24 28-51 12-36 (83)
22 1x2n_A Homeobox protein pknox1 45.7 19 0.00066 20.0 2.8 24 28-51 12-36 (73)
23 3k2a_A Homeobox protein MEIS2; 44.6 15 0.0005 20.5 2.2 22 30-51 5-27 (67)
24 1qez_A Ppase, S-ppase, protein 42.4 16 0.00056 24.6 2.5 25 22-46 115-139 (173)
25 3ke4_A Hypothetical cytosolic 41.4 13 0.00044 26.0 1.9 35 29-63 103-137 (213)
26 2prd_A Pyrophosphate phosphohy 40.3 20 0.00068 24.2 2.6 25 22-46 116-140 (174)
27 3mab_A Uncharacterized protein 40.3 19 0.00065 21.9 2.3 22 26-47 66-87 (93)
28 2bqx_A Inorganic pyrophosphata 40.3 29 0.00097 23.4 3.4 25 22-46 117-141 (173)
29 2zhy_A ATP:COB(I)alamin adenos 39.0 14 0.00049 25.0 1.8 35 29-63 83-117 (183)
30 3d53_A Inorganic pyrophosphata 38.7 20 0.00069 24.2 2.5 25 22-46 119-143 (173)
31 3mi6_A Alpha-galactosidase; NE 38.5 22 0.00074 29.0 3.0 24 24-47 605-628 (745)
32 2lk2_A Homeobox protein TGIF1; 37.4 22 0.00075 21.6 2.3 23 29-51 11-34 (89)
33 3tr4_A Inorganic pyrophosphata 36.6 24 0.00083 23.9 2.6 33 22-54 120-156 (178)
34 3fq3_A Inorganic pyrophosphata 36.5 31 0.0011 23.8 3.2 26 22-47 140-165 (197)
35 2o70_A OHCU decarboxylase; URI 36.3 20 0.00068 23.9 2.1 24 26-49 92-115 (174)
36 4epz_A Transcription anti-term 35.7 27 0.00094 23.6 2.7 28 24-51 130-157 (162)
37 3q46_A TT-ippase; inorganic py 35.3 26 0.0009 23.7 2.6 26 22-47 117-142 (178)
38 1sxv_A Inorganic pyrophosphata 34.9 27 0.00093 23.6 2.6 25 22-46 113-137 (172)
39 2o8i_A AGR_C_4230P, hypothetic 34.4 23 0.00077 23.4 2.2 26 24-49 86-111 (165)
40 1mnm_C Protein (MAT alpha-2 tr 34.2 35 0.0012 19.6 2.8 24 28-51 32-56 (87)
41 2ecc_A Homeobox and leucine zi 33.8 33 0.0011 20.1 2.6 22 29-52 9-30 (76)
42 2au7_A Inorganic pyrophosphata 33.2 39 0.0013 22.8 3.2 25 22-46 118-142 (175)
43 2i5u_A DNAD domain protein; st 32.7 36 0.0012 19.6 2.7 17 29-45 15-31 (83)
44 3ld3_A Inorganic pyrophosphata 32.3 31 0.0011 23.9 2.6 33 22-54 140-176 (199)
45 1bw5_A ISL-1HD, insulin gene e 32.0 44 0.0015 18.0 2.8 22 28-51 8-29 (66)
46 2lmt_A Calmodulin-related prot 31.1 32 0.0011 20.5 2.3 20 27-46 1-20 (148)
47 3gvf_A Inorganic pyrophosphata 30.7 34 0.0012 23.6 2.6 26 22-47 140-165 (196)
48 1wh5_A ZF-HD homeobox family p 29.5 44 0.0015 19.2 2.6 24 28-51 22-47 (80)
49 3a02_A Homeobox protein arista 29.2 54 0.0018 17.3 2.8 21 29-51 5-25 (60)
50 1hji_B NUN-protein; bacterioph 28.6 54 0.0018 15.5 2.9 18 28-45 2-19 (26)
51 2dmu_A Homeobox protein goosec 27.9 56 0.0019 17.8 2.8 22 28-51 12-33 (70)
52 2cuf_A FLJ21616 protein; homeo 27.6 53 0.0018 19.1 2.8 22 28-51 12-33 (95)
53 2q37_A OHCU decarboxylase; 2-O 27.4 27 0.00091 23.6 1.6 23 27-49 105-127 (181)
54 2zc2_A DNAD-like replication p 27.1 28 0.00095 19.6 1.4 17 29-45 17-33 (78)
55 2zet_C Melanophilin; complex, 26.8 61 0.0021 21.2 3.2 23 23-45 10-32 (153)
56 1sd4_A Penicillinase repressor 26.7 60 0.0021 18.9 3.0 21 28-48 106-126 (126)
57 1akh_A Protein (mating-type pr 25.7 58 0.002 17.1 2.6 22 28-51 10-31 (61)
58 1le8_B Mating-type protein alp 25.6 57 0.0019 18.6 2.7 22 30-51 9-31 (83)
59 3a03_A T-cell leukemia homeobo 25.4 70 0.0024 16.7 2.8 22 28-51 2-23 (56)
60 2da2_A Alpha-fetoprotein enhan 24.2 72 0.0025 17.3 2.8 22 28-51 12-33 (70)
61 1ayg_A Cytochrome C-552; elect 23.6 61 0.0021 17.4 2.4 16 29-44 63-78 (80)
62 2e1o_A Homeobox protein PRH; D 23.4 76 0.0026 17.3 2.8 22 28-51 12-33 (70)
63 1wve_C 4-cresol dehydrogenase 23.1 69 0.0023 17.4 2.6 19 28-46 56-74 (80)
64 1puf_B PRE-B-cell leukemia tra 23.0 78 0.0027 17.3 2.8 24 28-51 6-30 (73)
65 2p4f_A Similar to SP|P32453 sa 22.8 69 0.0024 23.4 3.2 29 27-57 111-139 (299)
66 1gdv_A Cytochrome C6; RED ALGA 22.3 61 0.0021 17.2 2.3 18 29-46 64-81 (85)
67 1a56_A C-551, ferricytochrome 22.0 58 0.002 17.5 2.1 18 28-45 63-80 (81)
68 1nwd_B GAD, glutamate decarbox 21.3 49 0.0017 15.9 1.4 18 31-48 8-25 (28)
69 2da1_A Alpha-fetoprotein enhan 21.1 91 0.0031 16.8 2.8 22 28-51 12-33 (70)
70 4g29_A Secreted effector prote 21.1 32 0.0011 23.8 1.0 17 39-55 169-186 (186)
71 1jgg_A Segmentation protein EV 20.9 98 0.0034 16.2 2.9 22 28-51 6-27 (60)
72 2zon_G Cytochrome C551; nitrit 20.7 94 0.0032 16.8 2.9 18 29-46 69-86 (87)
73 4fnq_A Alpha-galactosidase AGA 20.7 50 0.0017 26.3 2.2 24 24-47 604-627 (729)
74 1f1f_A Cytochrome C6; heme, pr 20.6 69 0.0024 17.2 2.3 19 29-47 68-86 (89)
75 3rkq_A Homeobox protein NKX-2. 20.4 71 0.0024 16.4 2.2 22 28-51 7-28 (58)
No 1
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.80 E-value=2.2e-20 Score=120.04 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=51.7
Q ss_pred ceecccccchhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHcccCceeeEEc
Q psy15440 2 QISRRDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQLDSKYTYIGKLL 56 (79)
Q Consensus 2 ~FAGrDaSRalat~~~~~~~~~~~dls~Lt~~el~~L~~W~~~f~~KYp~VG~l~ 56 (79)
.|||+||||+|++++++.+ +++++|++|++.|+++|++|.+||++|||+||+|+
T Consensus 48 ~~AG~DaT~~f~~~~~~~~-~l~~dl~~L~~~e~~~l~~W~~~f~~kY~~VG~l~ 101 (102)
T 1j03_A 48 MFAGKDASRALGKMSKNEE-DVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101 (102)
T ss_dssp TTTTSBCHHHHHHTCCCSS-SCCSSCSSCCHHHHHHHHHHHHHHHTTSCEEECCC
T ss_pred ccccchHHHHHHHcCCChh-hccCcccCCCHHHHHHHHHHHHHHhccCCeeeEEe
Confidence 5899999999999999986 78899999999999999999999999999999987
No 2
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=73.74 E-value=1.9 Score=29.19 Aligned_cols=34 Identities=6% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.++++++..|+.|.+.|..++| ....+-|+|.|.
T Consensus 78 ~i~~~~v~~LE~~id~~~~~lp-l~~FILPgg~~~ 111 (172)
T 1wy1_A 78 GISEERIKWLEGLISRYEEMVN-LKSFVLPGGTLE 111 (172)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCS-CCSSCCSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHhhhCC-CcCeEECCCCHH
Confidence 5889999999999999999999 877777888653
No 3
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=71.80 E-value=0.77 Score=27.63 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=13.1
Q ss_pred ceecccccchhhcCCC
Q psy15440 2 QISRRDASRAFATFTV 17 (79)
Q Consensus 2 ~FAGrDaSRalat~~~ 17 (79)
.+||+|||.+|..+..
T Consensus 51 ~~aG~DaT~~f~~~~~ 66 (90)
T 1cxy_A 51 VWCGQESTEAWETKSY 66 (90)
T ss_dssp GGTTSBCHHHHHHTTT
T ss_pred HHCCcchhHHHhhccc
Confidence 5799999999986544
No 4
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=71.26 E-value=0.8 Score=27.04 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=9.4
Q ss_pred ceecccccchh
Q psy15440 2 QISRRDASRAF 12 (79)
Q Consensus 2 ~FAGrDaSRal 12 (79)
.+||+|||++|
T Consensus 46 ~~aG~D~T~~~ 56 (82)
T 1x3x_A 46 NKAGQDATSVL 56 (82)
T ss_dssp GGTTSBCHHHH
T ss_pred hhCCCCCchhh
Confidence 58999999993
No 5
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=70.20 E-value=0.69 Score=28.15 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=11.2
Q ss_pred ceecccccchhhc
Q psy15440 2 QISRRDASRAFAT 14 (79)
Q Consensus 2 ~FAGrDaSRalat 14 (79)
.+||+|||.+|-.
T Consensus 53 ~~aG~DaT~~F~~ 65 (92)
T 3ner_A 53 EQAGVDASESFED 65 (92)
T ss_dssp TTTTSBCHHHHHH
T ss_pred HhcCCcchHHHHH
Confidence 5799999999964
No 6
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=69.90 E-value=0.65 Score=28.03 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.9
Q ss_pred ceecccccchhhc
Q psy15440 2 QISRRDASRAFAT 14 (79)
Q Consensus 2 ~FAGrDaSRalat 14 (79)
.+||+|||.+|-.
T Consensus 49 ~~aG~DaT~~F~~ 61 (88)
T 3lf5_A 49 RAAGSDGTELFDQ 61 (88)
T ss_dssp TTTTEECHHHHHH
T ss_pred hcCCCcchHHHHH
Confidence 5799999999864
No 7
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=68.31 E-value=0.96 Score=27.44 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=11.1
Q ss_pred ceecccccchhhc
Q psy15440 2 QISRRDASRAFAT 14 (79)
Q Consensus 2 ~FAGrDaSRalat 14 (79)
.+||+|||.+|-.
T Consensus 48 ~~aG~DaT~~f~~ 60 (93)
T 1cyo_A 48 EQAGGDATENFED 60 (93)
T ss_dssp HHTTSBCHHHHHH
T ss_pred HhcCccchHHHHH
Confidence 4799999999964
No 8
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=68.27 E-value=0.91 Score=28.78 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=11.5
Q ss_pred ceecccccchhhc
Q psy15440 2 QISRRDASRAFAT 14 (79)
Q Consensus 2 ~FAGrDaSRalat 14 (79)
.+||+|||.+|..
T Consensus 67 ~~aGkDaT~~F~~ 79 (112)
T 2keo_A 67 QFAGEDPVVALEA 79 (112)
T ss_dssp GGTTSCHHHHHHH
T ss_pred hhCCccchHHHhH
Confidence 5899999999976
No 9
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=67.89 E-value=0.98 Score=26.94 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.2
Q ss_pred ceecccccchhhc
Q psy15440 2 QISRRDASRAFAT 14 (79)
Q Consensus 2 ~FAGrDaSRalat 14 (79)
.+||+|||.+|..
T Consensus 50 ~~aG~DaT~~f~~ 62 (88)
T 2ibj_A 50 EQAGKDATEHFED 62 (88)
T ss_dssp TTTTEECHHHHHH
T ss_pred HhCCCcchHHHHH
Confidence 4799999999964
No 10
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=64.79 E-value=3.9 Score=27.76 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|...|.+++|-+...+-|+|.|.
T Consensus 76 ~i~~~~v~~LE~~id~~~~~l~~l~~FILPGg~~~ 110 (177)
T 1woz_A 76 KIDEKYVKWLEERTVEYRKESGPVKLFVIPGGSEE 110 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCEEEEESCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceecCCCCHH
Confidence 58999999999999999999998888887888653
No 11
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=64.75 E-value=1 Score=28.01 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=10.9
Q ss_pred ceecccccchhhc
Q psy15440 2 QISRRDASRAFAT 14 (79)
Q Consensus 2 ~FAGrDaSRalat 14 (79)
.+||+|||.+|..
T Consensus 52 ~~aGkDaT~~F~~ 64 (104)
T 1hko_A 52 EQAGGDATENFED 64 (104)
T ss_dssp TTCSEECHHHHTT
T ss_pred HhcCccchHHHHH
Confidence 4799999999853
No 12
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=64.64 E-value=3 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
..+++++++.|+.|.+.|.+++|-....+-|+|.|.
T Consensus 90 ~~i~~~~v~~LE~~id~~~~~l~pl~~FILPGG~~~ 125 (193)
T 2g2d_A 90 LRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPL 125 (193)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCCCSSCEESCSSHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhCCCCCceeeCCCCHH
Confidence 368999999999999999999988877777777653
No 13
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=64.23 E-value=3.5 Score=28.34 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.++++++..|+.|.+.|..++|-....+-|+|.|.
T Consensus 84 ~i~~~~v~~LE~~Id~~~~~l~pl~~FILPGG~~~ 118 (193)
T 1rty_A 84 KLTEESVSFLETRIDAYTAEAPELKKFILPGGSKC 118 (193)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCSCBCSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceeeCCCCHH
Confidence 58999999999999999999998888888888653
No 14
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=62.84 E-value=3.7 Score=28.28 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|.+.|.+++|-....+-|+|.|.
T Consensus 92 ~i~~~~v~~LE~~id~~~~~l~pl~~FILPGG~~~ 126 (194)
T 3ci3_A 92 FKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQL 126 (194)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSSCBCSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceeeCCCCHH
Confidence 68999999999999999999998887877888653
No 15
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=61.97 E-value=3.1 Score=29.09 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.++++++..|+.|.+.|..++|-+...+-|+|.|.
T Consensus 97 ~i~~~~v~~LE~~Id~~~~~l~pl~~FILPGG~~~ 131 (208)
T 2ah6_A 97 KAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEA 131 (208)
T ss_dssp SCCHHHHHHHHHHHHHHHHHSCCCCSCEESCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcceeeCCCCHH
Confidence 58999999999999999999998877777777653
No 16
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=61.32 E-value=3.2 Score=28.20 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|.+.|.+++|-....+-|+|.|.
T Consensus 77 ~i~~~~v~~LE~~id~~~~~l~~l~~FILPGg~~~ 111 (177)
T 1nog_A 77 TVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVE 111 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCCCSCBCSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceeeCCCCHH
Confidence 58999999999999999999988887777888653
No 17
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=59.12 E-value=3.7 Score=28.25 Aligned_cols=35 Identities=11% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|.+.|.+++|-....+-|+|.|.
T Consensus 90 ~i~~~~v~~LE~~Id~~~~~lppl~~FILPGG~~~ 124 (196)
T 2idx_A 90 TFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKI 124 (196)
T ss_dssp -CCSHHHHHHHHHHHHHHHTSCCCCSCBCSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceEECCCCHH
Confidence 57889999999999999999998877777888653
No 18
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=58.49 E-value=3.7 Score=27.76 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|...|.+++|-....+-|+|.|.
T Consensus 74 ~i~~~~v~~LE~~id~~~~~l~pl~~FILPgg~~~ 108 (172)
T 1wvt_A 74 NFSDEKVKGIEELITNYSKELEPLRNFVLPGGHIA 108 (172)
T ss_dssp CCCTHHHHHHHHHHHHHHTTSCCCCSCEESCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcceeeCCCCHH
Confidence 57889999999999999999988876776777653
No 19
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=54.47 E-value=4.7 Score=28.43 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|.+.|.+++|-....+-|+|.|.
T Consensus 121 ~i~~~~v~~LE~~Id~~~~~lppl~~FILPGGs~~ 155 (223)
T 2nt8_A 121 FKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQL 155 (223)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCSSCEESCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCceEeCCCCHH
Confidence 68999999999999999999988876766777653
No 20
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=48.94 E-value=17 Score=19.40 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHH-HcccCce
Q psy15440 29 DLNPAEWESVREWEEQ-LDSKYTY 51 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~-f~~KYp~ 51 (79)
-++..++..|..|... +...||-
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~ 27 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLD 27 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcC
Confidence 4789999999999763 3467774
No 21
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=47.37 E-value=13 Score=21.56 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHH-cccCce
Q psy15440 28 SDLNPAEWESVREWEEQL-DSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f-~~KYp~ 51 (79)
.-++..++..|..|...+ ...||-
T Consensus 12 ~~~s~~q~~~L~~~f~~~~~~pYPs 36 (83)
T 2dmn_A 12 GNLPAESVKILRDWMYKHRFKAYPS 36 (83)
T ss_dssp SSCCHHHHHHHHHHHHHTTTTCCCC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCC
Confidence 458999999999997654 468874
No 22
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.72 E-value=19 Score=19.98 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHH-HcccCce
Q psy15440 28 SDLNPAEWESVREWEEQ-LDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~-f~~KYp~ 51 (79)
.-++..++..|..|... ....||-
T Consensus 12 ~~~~~~q~~~Le~~f~~~~~~~yp~ 36 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLFQHIGHPYPT 36 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCC
Confidence 45899999999999865 4567874
No 23
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=44.61 E-value=15 Score=20.51 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHH-HcccCce
Q psy15440 30 LNPAEWESVREWEEQ-LDSKYTY 51 (79)
Q Consensus 30 Lt~~el~~L~~W~~~-f~~KYp~ 51 (79)
|+..++..|..|... ....||-
T Consensus 5 f~~~~~~~L~~~f~~h~~~pyp~ 27 (67)
T 3k2a_A 5 FPKVATNIMRAWLFQHLTHPYPS 27 (67)
T ss_dssp -CHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCC
Confidence 788999999999774 3567874
No 24
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=42.36 E-value=16 Score=24.63 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~ 46 (79)
....++++|.+..++.+.+|.+.|+
T Consensus 115 ~~i~di~Dl~~~~l~~i~~fF~~YK 139 (173)
T 1qez_A 115 SNIKDINDLPQATKNKIVHFFEHYK 139 (173)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTT
T ss_pred hhcCChHHCCHHHHHHHHHHHHHhc
Confidence 4456789999999999999999997
No 25
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=41.42 E-value=13 Score=26.02 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.+++++++.|+.|.+.|....|-.-..+-|+|.|.
T Consensus 103 ~i~~~~v~~LE~~ID~~~~~lppl~~FILPGGs~~ 137 (213)
T 3ke4_A 103 KVTIVMVESLERKIDLYIEEAPPLERFILPGGSEA 137 (213)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCSCBCSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCceEeCCCCHH
Confidence 58999999999999999998876655666777653
No 26
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=40.33 E-value=20 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~ 46 (79)
....++++|.+..++.+.+|.+.|+
T Consensus 116 ~~i~di~Dl~~~~l~~i~~fF~~YK 140 (174)
T 2prd_A 116 DHIQDIGDVPEGVKQEIQHFFETYK 140 (174)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTT
T ss_pred hhcCChHHCCHHHHHHHHHHHHHhc
Confidence 3455789999999999999999996
No 27
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=40.30 E-value=19 Score=21.89 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHcc
Q psy15440 26 DLSDLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 26 dls~Lt~~el~~L~~W~~~f~~ 47 (79)
.|..|++++++.|.+|.+.++.
T Consensus 66 ~w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 66 RWHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp CGGGSCHHHHHHHHHHHHHHCC
T ss_pred cHHHCCHHHHHHHHHHHHHhhc
Confidence 5788999999999999998863
No 28
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=40.30 E-value=29 Score=23.38 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~ 46 (79)
....++++|.+..++.+.+|.+.|+
T Consensus 117 ~~i~di~Dl~~~~l~~i~~fF~~YK 141 (173)
T 2bqx_A 117 SYVKDIDDLSKHTLDKIKHFFETYK 141 (173)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTT
T ss_pred hhcCChhHCCHHHHHHHHHHHHHhc
Confidence 4456789999999999999999997
No 29
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=39.04 E-value=14 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHcccCceeeEEcCCCCCCC
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHI 63 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~VG~l~~~~~~pt 63 (79)
.++++++..|+.|.+.|....|-....+-|+|.|.
T Consensus 83 ~i~~~~v~~LE~~id~~~~~l~pl~~FILPgg~~~ 117 (183)
T 2zhy_A 83 AITDAHLARLDGWLAHYNGQLPPLEEFILPGGARG 117 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCCCCSCCBSCSSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCcceeeCCCCHH
Confidence 58899999999999999998887776666777653
No 30
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=38.74 E-value=20 Score=24.21 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~ 46 (79)
....++++|.+..++.+.+|.+.|+
T Consensus 119 ~~i~di~Dl~~~~l~~i~~fF~~YK 143 (173)
T 3d53_A 119 DHIKELDDLCEMLKKRIVHFFEHYK 143 (173)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTT
T ss_pred hhcCChhHCCHHHHHHHHHHHHHHc
Confidence 3456789999999999999999997
No 31
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=38.54 E-value=22 Score=29.02 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcc
Q psy15440 24 YDDLSDLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 24 ~~dls~Lt~~el~~L~~W~~~f~~ 47 (79)
..|+..|+++|++.+.+|.++|++
T Consensus 605 eldl~~ls~~e~~~~~~~i~~YK~ 628 (745)
T 3mi6_A 605 ELDITKMAPTELDQVKKQVAFYKC 628 (745)
T ss_dssp ESCSTTCCHHHHHHHHHHHHHHHH
T ss_pred eeChhhCCHHHHHHHHHHHHHHHH
Confidence 358899999999999999999986
No 32
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=37.42 E-value=22 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHH-HHcccCce
Q psy15440 29 DLNPAEWESVREWEE-QLDSKYTY 51 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~-~f~~KYp~ 51 (79)
-|+......|..|.. .+...||-
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs 34 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPS 34 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCC
Confidence 489999999999985 56678874
No 33
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=36.65 E-value=24 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=25.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcc----cCceeeE
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLDS----KYTYIGK 54 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~~----KYp~VG~ 54 (79)
....++++|.+..++.+.+|.+.|+. |.-.|+-
T Consensus 120 ~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g 156 (178)
T 3tr4_A 120 EAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKG 156 (178)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEE
T ss_pred hhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEecc
Confidence 34567899999999999999999984 4444443
No 34
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=36.55 E-value=31 Score=23.83 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=22.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~~ 47 (79)
....++++|.+..++.+.+|.+.|+.
T Consensus 140 ~~i~di~Dlp~~~l~~I~~fF~~YK~ 165 (197)
T 3fq3_A 140 EKIHDYTDMPEITLKQIAHFFEHYKD 165 (197)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTTT
T ss_pred cccCchHHCCHHHHHHHHHHHHHhcC
Confidence 44567899999999999999999973
No 35
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=36.28 E-value=20 Score=23.92 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcccC
Q psy15440 26 DLSDLNPAEWESVREWEEQLDSKY 49 (79)
Q Consensus 26 dls~Lt~~el~~L~~W~~~f~~KY 49 (79)
-+..+++.+.+.|..|-.-|++||
T Consensus 92 gl~~~~~~~~~~l~~lN~~Y~~kF 115 (174)
T 2o70_A 92 GMTTLDSAEIVHMYRLNSEYKERF 115 (174)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHC
Confidence 367899999999999999999875
No 36
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=35.68 E-value=27 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcccCce
Q psy15440 24 YDDLSDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 24 ~~dls~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.++-+.||.+|.+.+.+-..+=.+.||+
T Consensus 130 ~W~~~~Lt~eq~e~ieel~n~eeNpYP~ 157 (162)
T 4epz_A 130 TWNISDLTDEQKEIIEELRNFEENQYPW 157 (162)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHTSCGG
T ss_pred hcccccCCHHHHHHHHHHhccccCCCch
Confidence 3555789999999999999888899996
No 37
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=35.28 E-value=26 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~~ 47 (79)
....++++|.+..++.+.+|.+.|+.
T Consensus 117 ~~i~di~Dl~~~~l~~i~~fF~~YK~ 142 (178)
T 3q46_A 117 NDWKDISDVPKAFLDEIAHFFQRYKE 142 (178)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTTG
T ss_pred cccCChHHCCHHHHHHHHHHHHHhcC
Confidence 34557899999999999999999984
No 38
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=34.92 E-value=27 Score=23.59 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~ 46 (79)
....++++|.+..++.+..|.+.|+
T Consensus 113 ~~i~di~Dlp~~~l~~I~~fF~~YK 137 (172)
T 1sxv_A 113 DHVQDIGDVPAFELDAIKHFFVHYK 137 (172)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHHHHHHhc
Confidence 3455789999999999999999997
No 39
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=34.45 E-value=23 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcccC
Q psy15440 24 YDDLSDLNPAEWESVREWEEQLDSKY 49 (79)
Q Consensus 24 ~~dls~Lt~~el~~L~~W~~~f~~KY 49 (79)
...+..+++.+.+.|..+-.-|+.||
T Consensus 86 ~agl~~~~~~~~~~l~~lN~~Ye~kF 111 (165)
T 2o8i_A 86 GAGLDRLSPQEHARFTQLNSAYTEKF 111 (165)
T ss_dssp --CTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCCHHHHHHHHHHHHHHHHHc
Confidence 33578899999999999999999875
No 40
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=34.21 E-value=35 Score=19.58 Aligned_cols=24 Identities=8% Similarity=0.307 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHH-HcccCce
Q psy15440 28 SDLNPAEWESVREWEEQ-LDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~-f~~KYp~ 51 (79)
.-++..++..|..|... +...||-
T Consensus 32 ~~ft~~q~~~Le~~f~~~~~~~yP~ 56 (87)
T 1mnm_C 32 HRFTKENVRILESWFAKNIENPYLD 56 (87)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCcC
Confidence 45999999999999763 3467874
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.77 E-value=33 Score=20.06 Aligned_cols=22 Identities=0% Similarity=0.022 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHcccCcee
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTYI 52 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~V 52 (79)
-+|..|+..|..|.. ..+||-.
T Consensus 9 kfT~~Ql~~Le~~F~--~~~YPs~ 30 (76)
T 2ecc_A 9 RKTKEQLAILKSFFL--QCQWARR 30 (76)
T ss_dssp CCCHHHHHHHHHHHH--HCSSCCH
T ss_pred CCCHHHHHHHHHHHH--HCCCCCH
Confidence 489999999999876 4677743
No 42
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=33.25 E-value=39 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~ 46 (79)
....++++|.+..++.+.+|.+.|+
T Consensus 118 ~~i~di~Dl~~~~l~~i~~fF~~YK 142 (175)
T 2au7_A 118 DHIKDVNDLPELLKAQIAHFFEHYK 142 (175)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCChHHCCHHHHHHHHHHHHHhh
Confidence 3445689999999999999999997
No 43
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=32.67 E-value=36 Score=19.59 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy15440 29 DLNPAEWESVREWEEQL 45 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f 45 (79)
-|++.+++.|..|.+.|
T Consensus 15 ~ls~~e~e~i~~w~~~~ 31 (83)
T 2i5u_A 15 LMSSKTMTDFDYWISDF 31 (83)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 58999999999999988
No 44
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=32.33 E-value=31 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcc----cCceeeE
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLDS----KYTYIGK 54 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~~----KYp~VG~ 54 (79)
....++++|.+..++.+.+|.+.|+. |.-.|+.
T Consensus 140 ~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~g 176 (199)
T 3ld3_A 140 GNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGC 176 (199)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEE
T ss_pred cccCchHHCCHHHHHHHHHHHHHhcCcCCCceEEecC
Confidence 34567899999999999999999984 4444443
No 45
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=32.03 E-value=44 Score=18.03 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-+++.|+..|..|... ..||-
T Consensus 8 t~ft~~q~~~Le~~F~~--~~yp~ 29 (66)
T 1bw5_A 8 TVLNEKQLHTLRTCYAA--NPRPD 29 (66)
T ss_dssp CCCSHHHHHHHHHHHHH--CSCCC
T ss_pred CCCCHHHHHHHHHHHhc--CCCcC
Confidence 45899999999988654 57764
No 46
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=31.14 E-value=32 Score=20.53 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHHHHc
Q psy15440 27 LSDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 27 ls~Lt~~el~~L~~W~~~f~ 46 (79)
++.||++|++.|.+....|.
T Consensus 1 Ms~lt~eqi~el~~~F~~~D 20 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFD 20 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47899999999998888885
No 47
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=30.71 E-value=34 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcc
Q psy15440 22 DEYDDLSDLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 22 ~~~~dls~Lt~~el~~L~~W~~~f~~ 47 (79)
....++++|.+..++.+.+|.+.|+.
T Consensus 140 ~~i~di~dlp~~~l~~I~~fF~~YK~ 165 (196)
T 3gvf_A 140 ANLKSIDDVPAYLKDQIKHFFEQYKA 165 (196)
T ss_dssp TTCCSGGGSCHHHHHHHHHHHHHTTT
T ss_pred hhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 34567899999999999999999984
No 48
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=29.49 E-value=44 Score=19.17 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHH--cccCce
Q psy15440 28 SDLNPAEWESVREWEEQL--DSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f--~~KYp~ 51 (79)
.-++..|+..|..+.+.. ...||-
T Consensus 22 t~ft~~Ql~~Le~~f~~~~~~~~yp~ 47 (80)
T 1wh5_A 22 TKFTAEQKERMLALAERIGWRIQRQD 47 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCTTT
T ss_pred ccCCHHHHHHHHHHHHhccCcCCCcC
Confidence 559999999999876652 267763
No 49
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=29.19 E-value=54 Score=17.30 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHcccCce
Q psy15440 29 DLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
-+|..|+..|..+... .+||-
T Consensus 5 ~ft~~Q~~~Le~~F~~--~~yp~ 25 (60)
T 3a02_A 5 TFTSFQLEELEKAFSR--THYPD 25 (60)
T ss_dssp CCCHHHHHHHHHHHHH--CSSCC
T ss_pred ccCHHHHHHHHHHHHc--CCCcC
Confidence 4789999999887643 57774
No 50
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=28.61 E-value=54 Score=15.52 Aligned_cols=18 Identities=17% Similarity=0.588 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15440 28 SDLNPAEWESVREWEEQL 45 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f 45 (79)
.+|+..++..+..|+...
T Consensus 2 rgltsrdrrriarwekri 19 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRI 19 (26)
T ss_dssp CSSCHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHH
Confidence 579999999999999864
No 51
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.89 E-value=56 Score=17.78 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-++..|+..|..|... ..||-
T Consensus 12 t~ft~~q~~~Le~~F~~--~~yp~ 33 (70)
T 2dmu_A 12 TIFTDEQLEALENLFQE--TKYPD 33 (70)
T ss_dssp CCCCHHHHHHHHHHHHH--CSSCC
T ss_pred CCCCHHHHHHHHHHHHc--cCCCC
Confidence 45899999999887643 67764
No 52
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.58 E-value=53 Score=19.14 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-+++.|+..|..|... ..||-
T Consensus 12 ~~ft~~ql~~Le~~F~~--~~yP~ 33 (95)
T 2cuf_A 12 FTWRKECLAVMESYFNE--NQYPD 33 (95)
T ss_dssp CCCCHHHHHHHHHHHHH--CSSCC
T ss_pred CcCCHHHHHHHHHHHhc--CCCCC
Confidence 45899999999988665 67873
No 53
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=27.39 E-value=27 Score=23.61 Aligned_cols=23 Identities=13% Similarity=0.445 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHHcccC
Q psy15440 27 LSDLNPAEWESVREWEEQLDSKY 49 (79)
Q Consensus 27 ls~Lt~~el~~L~~W~~~f~~KY 49 (79)
+..+++.+.+.|..+-.-|++||
T Consensus 105 l~~~~~~e~~~L~~LN~~Ye~kF 127 (181)
T 2q37_A 105 FATTSASALQELAEWNVLYKKKF 127 (181)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHc
Confidence 47899999999999999999875
No 54
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=27.07 E-value=28 Score=19.59 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy15440 29 DLNPAEWESVREWEEQL 45 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f 45 (79)
-|++.|++.|..|.+.|
T Consensus 17 ~ls~~e~~~i~~w~~~~ 33 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDD 33 (78)
T ss_dssp CCCHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 58999999999999874
No 55
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.78 E-value=61 Score=21.20 Aligned_cols=23 Identities=30% Similarity=0.147 Sum_probs=18.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Q psy15440 23 EYDDLSDLNPAEWESVREWEEQL 45 (79)
Q Consensus 23 ~~~dls~Lt~~el~~L~~W~~~f 45 (79)
...||+.||++|++.|.+-.+..
T Consensus 10 ~~~dLs~LteeEr~~Il~VL~Rd 32 (153)
T 2zet_C 10 KRLDLSTLTDEEAEHVWAVVQRD 32 (153)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcccCCHHHHHHHHHHHHhH
Confidence 35799999999999887777654
No 56
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.74 E-value=60 Score=18.89 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHHHccc
Q psy15440 28 SDLNPAEWESVREWEEQLDSK 48 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~K 48 (79)
.+|+++|++.|..+......|
T Consensus 106 ~~ls~ee~~~l~~~L~~~~~~ 126 (126)
T 1sd4_A 106 EELNNKEIEELRDILNDISKK 126 (126)
T ss_dssp TCSCHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHHHHhhhcC
Confidence 589999999999988877643
No 57
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=25.68 E-value=58 Score=17.12 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-++..++..|..|.. ...||-
T Consensus 10 t~ft~~q~~~Le~~f~--~~~yp~ 31 (61)
T 1akh_A 10 SSISPQARAFLEEVFR--RKQSLN 31 (61)
T ss_dssp --CCHHHHHHHHHHHH--HCSSCC
T ss_pred CCCCHHHHHHHHHHHH--hCCCcC
Confidence 3489999999998864 357763
No 58
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=25.64 E-value=57 Score=18.57 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHH-HcccCce
Q psy15440 30 LNPAEWESVREWEEQ-LDSKYTY 51 (79)
Q Consensus 30 Lt~~el~~L~~W~~~-f~~KYp~ 51 (79)
++..++..|..|... +...||-
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~ 31 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLD 31 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCC
T ss_pred CCHHHHHHHHHHHHhhCCCCCcC
Confidence 899999999999763 3367774
No 59
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=25.37 E-value=70 Score=16.65 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
+-++..|+..|..+.. ..+||-
T Consensus 2 T~ft~~Ql~~Le~~F~--~~~yp~ 23 (56)
T 3a03_A 2 TSFSRSQVLELERRFL--RQKYLA 23 (56)
T ss_dssp --CCHHHHHHHHHHHH--HCSSCC
T ss_pred CccCHHHHHHHHHHHH--hcCCcC
Confidence 4578899999987643 357764
No 60
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.15 E-value=72 Score=17.25 Aligned_cols=22 Identities=5% Similarity=0.240 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-+++.|+..|..+... ..||-
T Consensus 12 t~ft~~q~~~Le~~F~~--~~yp~ 33 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDA--NAYPK 33 (70)
T ss_dssp CCCCHHHHHHHHHHHHH--CSSCC
T ss_pred CCCCHHHHHHHHHHHHc--CCCcC
Confidence 45899999999887543 57764
No 61
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=23.62 E-value=61 Score=17.40 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15440 29 DLNPAEWESVREWEEQ 44 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~ 44 (79)
.|+++|+..|..|...
T Consensus 63 ~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999864
No 62
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=23.41 E-value=76 Score=17.25 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-++..|+..|..|.. ...||-
T Consensus 12 ~~ft~~q~~~Le~~F~--~~~yp~ 33 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFE--TQKYLS 33 (70)
T ss_dssp CCCCHHHHHHHHHHHH--HCSSCC
T ss_pred CCCCHHHHHHHHHHHH--cCCCcC
Confidence 4489999999998864 356764
No 63
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=23.09 E-value=69 Score=17.38 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHHc
Q psy15440 28 SDLNPAEWESVREWEEQLD 46 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~ 46 (79)
..|+++|+..|..|.....
T Consensus 56 ~~ls~~ei~~l~~yl~~~~ 74 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSLP 74 (80)
T ss_dssp TTSCHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHHHHHCc
Confidence 4699999999999998765
No 64
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=22.95 E-value=78 Score=17.31 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHHHH-HcccCce
Q psy15440 28 SDLNPAEWESVREWEEQ-LDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~-f~~KYp~ 51 (79)
.-++..++..|..|... -...||-
T Consensus 6 ~~ft~~q~~~Le~~f~~~~~~~yP~ 30 (73)
T 1puf_B 6 RNFNKQATEILNEYFYSHLSNPYPS 30 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCcC
Confidence 35789999999999642 3457774
No 65
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}
Probab=22.81 E-value=69 Score=23.41 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcccCceeeEEcC
Q psy15440 27 LSDLNPAEWESVREWEEQLDSKYTYIGKLLK 57 (79)
Q Consensus 27 ls~Lt~~el~~L~~W~~~f~~KYp~VG~l~~ 57 (79)
+.+++++|+..| |..++..+=..||-++.
T Consensus 111 l~~~~~~eI~~I--Wr~~H~~k~~~l~AvIp 139 (299)
T 2p4f_A 111 IKDLSKQEVEFL--WRAKWSNRDDSLVAVVP 139 (299)
T ss_dssp HTTSCHHHHHHH--HHHHTTTCSSEEEEEEE
T ss_pred hccCCHHHHHHH--HHHHHcCCCCeEEEecC
Confidence 588999999999 99999987566776664
No 66
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.35 E-value=61 Score=17.21 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHc
Q psy15440 29 DLNPAEWESVREWEEQLD 46 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~ 46 (79)
.|+++|+..|..|.....
T Consensus 64 ~ls~~ei~~l~~yl~~~~ 81 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLSQS 81 (85)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 699999999999988654
No 67
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=22.04 E-value=58 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy15440 28 SDLNPAEWESVREWEEQL 45 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f 45 (79)
..|+++|+..|-.|....
T Consensus 63 ~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 579999999999998754
No 68
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=21.33 E-value=49 Score=15.93 Aligned_cols=18 Identities=17% Similarity=0.529 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHccc
Q psy15440 31 NPAEWESVREWEEQLDSK 48 (79)
Q Consensus 31 t~~el~~L~~W~~~f~~K 48 (79)
++-|++-+-.|..|-++|
T Consensus 8 sevqlemitawkkfveek 25 (28)
T 1nwd_B 8 SEVQLEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356788999999998754
No 69
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.10 E-value=91 Score=16.83 Aligned_cols=22 Identities=5% Similarity=0.142 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-++..|+..|..+.. ...||-
T Consensus 12 t~ft~~q~~~Le~~F~--~~~yp~ 33 (70)
T 2da1_A 12 TRITDDQLRVLRQYFD--INNSPS 33 (70)
T ss_dssp CCCCHHHHHHHHHHHH--HCSSCC
T ss_pred CCCCHHHHHHHHHHHH--HCCCCC
Confidence 4589999999988754 356764
No 70
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=21.08 E-value=32 Score=23.81 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=6.7
Q ss_pred HHHHHHHcc-cCceeeEE
Q psy15440 39 REWEEQLDS-KYTYIGKL 55 (79)
Q Consensus 39 ~~W~~~f~~-KYp~VG~l 55 (79)
-.|...|++ ||..+|+.
T Consensus 169 P~WY~~~k~~~~~~~~~~ 186 (186)
T 4g29_A 169 PRWFNTFKKQKYSLIGKM 186 (186)
T ss_dssp CHHHHHHHC---------
T ss_pred HHHHHHHHHHHhhhhhcC
Confidence 369998874 99999973
No 71
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=20.91 E-value=98 Score=16.18 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-+++.|+..|..+.. ...||-
T Consensus 6 t~ft~~Q~~~Le~~F~--~~~yp~ 27 (60)
T 1jgg_A 6 TAFTRDQLGRLEKEFY--KENYVS 27 (60)
T ss_dssp CCCCHHHHHHHHHHHH--HCSCCC
T ss_pred CCCCHHHHHHHHHHHH--HcCCCC
Confidence 3588999999987753 357763
No 72
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=20.75 E-value=94 Score=16.75 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHc
Q psy15440 29 DLNPAEWESVREWEEQLD 46 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~ 46 (79)
.|+++|+..|-.|.....
T Consensus 69 ~ls~~ei~~l~~yl~~~~ 86 (87)
T 2zon_G 69 AADEATLRAAVAYMMDAA 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 699999999999987653
No 73
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=20.66 E-value=50 Score=26.35 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcc
Q psy15440 24 YDDLSDLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 24 ~~dls~Lt~~el~~L~~W~~~f~~ 47 (79)
..|+..|++++++.|.+|..+|++
T Consensus 604 ~~dl~~ls~e~~~~lk~~Ia~yK~ 627 (729)
T 4fnq_A 604 ELDITKLTETEKQMIKQQVAFYKD 627 (729)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHHH
T ss_pred ccCcccCCHHHHHHHHHHHHHHHH
Confidence 457889999999999999999985
No 74
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.60 E-value=69 Score=17.21 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHcc
Q psy15440 29 DLNPAEWESVREWEEQLDS 47 (79)
Q Consensus 29 ~Lt~~el~~L~~W~~~f~~ 47 (79)
.|+++|+..|-.|......
T Consensus 68 ~ls~~ei~~l~~yl~~~~~ 86 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQAE 86 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 5999999999999886643
No 75
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=20.41 E-value=71 Score=16.37 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHcccCce
Q psy15440 28 SDLNPAEWESVREWEEQLDSKYTY 51 (79)
Q Consensus 28 s~Lt~~el~~L~~W~~~f~~KYp~ 51 (79)
.-++..|+..|..+.. ...||-
T Consensus 7 t~~t~~q~~~Le~~F~--~~~yp~ 28 (58)
T 3rkq_A 7 VLFSQAQVYELERRFK--QQRYLS 28 (58)
T ss_dssp CCCCHHHHHHHHHHHT--TCSSCC
T ss_pred CCcCHHHHHHHHHHHH--HcCCCC
Confidence 3478899999987743 456764
Done!