RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15440
(79 letters)
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 28.0 bits (63), Expect = 0.44
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 10 RAFATFTVTPGKDEY---DDLSDLNPAEW 35
R+F TF V P D + DL EW
Sbjct: 95 RSF-TFMVRPSADLFLQPQDLPPFRQGEW 122
>gnl|CDD|222264 pfam13614, AAA_31, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 145
Score = 25.6 bits (57), Expect = 2.1
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 9 SRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQLDSKYTYI 52
+A +DL +++P EWE + E+L +Y I
Sbjct: 70 IQAMGGLDYLAPPRNPEDLREVSPEEWEQLL---ERLRERYDVI 110
>gnl|CDD|234449 TIGR04053, sam_11, radical SAM protein, BA_1875 family. Members of
this subfamily of the radical SAM domain superfamily
show closer sequence relationships to peptide-modifying
proteins of bacteriocin and PQQ biosynthesis than to
other characterized radical SAM proteins. Within this
subfamily, targets are likely to be diverse [Unknown
function, Enzymes of unknown specificity].
Length = 365
Score = 26.1 bits (58), Expect = 2.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 26 DLSDLNPAEWESVREWEEQLDSKY 49
L DL P E E V W + +Y
Sbjct: 194 ALDDLTPEEAEDVLHWLYDVSDRY 217
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 25.5 bits (56), Expect = 3.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 29 DLNPAEWESVREW--EEQLDSKYTYIGKLL------KPGESHIN----YEDEEKGSIEE 75
DL AEW + W E +L ++ Y G LL K G + Y DE ++EE
Sbjct: 75 DLPLAEWLNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFYMDEVAKAVEE 133
>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32
(Rab32). Rab38/Rab32 subfamily. Rab32 and Rab38 are
members of the Rab family of small GTPases. Human Rab32
was first identified in platelets but it is expressed in
a variety of cell types, where it functions as an
A-kinase anchoring protein (AKAP). Rab38 has been shown
to be melanocyte-specific. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 201
Score = 25.0 bits (55), Expect = 4.7
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 6 RDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQLDSKYTY 51
+ A A F VT P+ +E+V +W+ LDSK T
Sbjct: 72 KGAVGAIIVFDVT------------RPSTFEAVLKWKADLDSKVTL 105
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 24.5 bits (54), Expect = 6.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 25 DDLSDLNPAEWESVREWEEQLDSK 48
+ LS L A+ E R E +L
Sbjct: 110 EGLSLLPEADPEVRRRLEAELAEL 133
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 24.4 bits (53), Expect = 6.9
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 2 QISRRDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEE 43
Q+ +A+ A FT+ PG+ +D L+ + A + W E
Sbjct: 132 QVLDAEANPALPKFTIEPGETAWDALT--HIARHVGLLPWLE 171
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 24.2 bits (53), Expect = 8.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 MQISRRDASRAFATFTVTPGKDEYDDL 27
Q+S+ D R + F +DEY +L
Sbjct: 454 RQLSKLDLRRKASFFESGLEEDEYKEL 480
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 24.1 bits (53), Expect = 8.5
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 32 PAEWESVREWEEQLDSKY 49
PA W++V++W E+L +++
Sbjct: 745 PAWWDNVQDWVEELKNEW 762
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.129 0.370
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,156,066
Number of extensions: 323839
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 17
Length of query: 79
Length of database: 10,937,602
Length adjustment: 48
Effective length of query: 31
Effective length of database: 8,808,610
Effective search space: 273066910
Effective search space used: 273066910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.1 bits)