RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15440
(79 letters)
>1j03_A Putative steroid binding protein; alpha and beta, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
d.120.1.2 PDB: 1t0g_A
Length = 102
Score = 55.3 bits (133), Expect = 4e-12
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 6 RDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQLDSKYTYIGKLL 56
+DASRA + +D L L E ++ +WE + ++KY +G+++
Sbjct: 52 KDASRALGKMSKNE-EDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.048
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 12 FATFTVTPGKD--EYDDLSDLNPAEW---ESVREWEEQLDSKYTYI---GKLLKPGES 61
+ TF G D + V+ WE K T+I G PG +
Sbjct: 460 YDTFD---GSDLRVLSGSISERIVDCIIRLPVK-WETTTQFKATHILDFG----PGGA 509
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 26.9 bits (60), Expect = 0.54
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 6 RDASRAFATFTVTPGKDEYDDLSDLN---PAEWESVRE 40
R ++AFA +T EY D A RE
Sbjct: 14 RRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYRE 51
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 26.3 bits (59), Expect = 0.96
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 22 DEYDDLSDLNPAEWESVREWEEQLDSKYTYIGKLLKP 58
+E D L+ A E R+ + LD K + P
Sbjct: 324 EEKADRKFLDKA-LEDYRDARKGLDDLAKPSEKAIHP 359
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 25.2 bits (56), Expect = 2.2
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 33 AEWESVREWEEQLDSKYTYIGKLLKPGE 60
A +V+ W L S L+ +
Sbjct: 348 ANLANVKNWRAYLASLEDKQEGPLQAYQ 375
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 25.2 bits (56), Expect = 2.7
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 33 AEWESVREWEEQLDSKYTYIGKLLKP 58
A +++ W E ++ T L+
Sbjct: 341 ANLKNIANWREYINMLETKEEGDLQF 366
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 25.0 bits (54), Expect = 3.0
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 5 RRDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREW 41
D S AT + PG+ Y + + E E R W
Sbjct: 17 DDDGSERIATKNLVPGQRVYGE--RVIKWEGEEYRIW 51
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 24.5 bits (54), Expect = 3.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 24 YDDLSDLNPAEWESVREWEEQLDSKYTYIGKLLKPGE 60
+ DLS LNP ++V+ S + +++ G
Sbjct: 1 HIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGH 37
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 24.1 bits (53), Expect = 5.1
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 30 LNPAEWESVREWEEQLDSKYTYIGKLLKPGE 60
+ P E++ + E L Y L P
Sbjct: 174 IKPRLNETLDDICEAL--SYVDY---LFPNF 199
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
7.94A {Bos taurus}
Length = 190
Score = 23.6 bits (50), Expect = 9.4
Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
Query: 33 AEWESVREW-EEQ 44
E ES+R+W EEQ
Sbjct: 82 QEPESIRKWREEQ 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.129 0.370
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,249,971
Number of extensions: 60993
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 15
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.3 bits)