RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15440
         (79 letters)



>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 109

 Score = 56.0 bits (135), Expect = 1e-12
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 6   RDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQLDSKYTYIGKLL 56
           +DASRA    +    +D    L  L   E  ++ +WE + ++KY  +G+++
Sbjct: 59  KDASRALGKMSKNE-EDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVV 108


>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
          [TaxId: 5507]}
          Length = 259

 Score = 27.5 bits (59), Expect = 0.15
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 6  RDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQL 45
          R  ++AFA   +T    EY    D   + +++ R +  + 
Sbjct: 13 RRHAQAFANTVLTKASAEYSTQKDQL-SRFQATRPFYREA 51


>d1yvua1 b.34.14.1 (A:4-314) Argonaute homologue Aq_1447 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 311

 Score = 25.8 bits (56), Expect = 0.60
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 45  LDSKYTYIGKLLKPGESHINYEDEEKGSIEE 75
           L+  YTY   +LKP  ++ N EDEE+  + +
Sbjct: 241 LEKGYTYPATILKPVLTYENLEDEERNEVAD 271


>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
           yoelii [TaxId: 5861]}
          Length = 186

 Score = 24.1 bits (51), Expect = 2.5
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 29  DLNPAEWESVREWEEQLDSKYTYIGKLLKPGESHINYEDEEKGSIEEKKD 78
           + N  ++    +  E LD K    G+++   +S +  +  E  S+     
Sbjct: 124 NTNGCQFFITTKKCEWLDGKNVVFGRIID-NDSLLLLKKIENVSVTPYIY 172


>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
          thermophilus [TaxId: 274]}
          Length = 233

 Score = 23.4 bits (49), Expect = 4.1
 Identities = 8/37 (21%), Positives = 10/37 (27%)

Query: 6  RDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWE 42
              R F    V PG  E D            + E+ 
Sbjct: 14 LGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFG 50


>d1vkca_ d.108.1.1 (A:) Putative acetyltransferase PF0028
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 149

 Score = 23.2 bits (49), Expect = 4.3
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 15 FTVTPGKDEYDDLSDLNPAEWESVRE----WEEQLDSKYTYIGKLLKPGESHINYEDEEK 70
          +T+  G++  +++  L+     S       +EE  +        LL  GE        E+
Sbjct: 2  YTIVDGEEYIEEIKKLDREISYSFVRFPISYEEYEERHEELFESLLSQGEHKFFVALNER 61

Query: 71 GSI 73
            +
Sbjct: 62 SEL 64


>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 231

 Score = 23.0 bits (48), Expect = 5.6
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 6  RDASRAFATFTVTPGKDEYDDLSDLNPAEWESVREWEEQLDSKYTYIGKL-LKPGESHIN 64
          R   R FA   + P   + D       ++ + + E           +    L      I 
Sbjct: 15 RQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIA 74

Query: 65 YE 66
           E
Sbjct: 75 LE 76


>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 311

 Score = 22.4 bits (47), Expect = 8.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 26 DLSDLNPAEWESVREWEEQLDSKYTYIGKLL 56
          DLS LNP   ++V+       S   +  +++
Sbjct: 5  DLSALNPELVQAVQHVVIGPSSLIVHFNEVI 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,031
Number of extensions: 12602
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 15
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.6 bits)