BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15442
         (599 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V3S|A Chain A, Structural Insights Into The Recognition Of Substrates And
           Activators By The Osr1 Kinase
 pdb|2V3S|B Chain B, Structural Insights Into The Recognition Of Substrates And
           Activators By The Osr1 Kinase
          Length = 96

 Score = 32.0 bits (71), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 453 DSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIII-----ILGELNSNRP 507
           +SK E N+ R EF    D+A+ +  Q+ +S     VDG  ++I+      I+ E  SNR 
Sbjct: 11  NSKKELNDIRFEFTPGRDTAEGV-SQELISA--GLVDGRDLVIVAANLQKIVEEPQSNRS 67

Query: 508 VPFRLTPNIMEFLTDIGVDGPL 529
           V F+L   +    +DI  DG L
Sbjct: 68  VTFKLASGVEG--SDIPDDGKL 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,059,231
Number of Sequences: 62578
Number of extensions: 675756
Number of successful extensions: 2095
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2095
Number of HSP's gapped (non-prelim): 1
length of query: 599
length of database: 14,973,337
effective HSP length: 104
effective length of query: 495
effective length of database: 8,465,225
effective search space: 4190286375
effective search space used: 4190286375
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)