Query psy15442
Match_columns 599
No_of_seqs 279 out of 1185
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:13:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05163 TRRAP TRansformation/t 100.0 3.6E-62 7.8E-67 497.3 22.1 243 277-564 1-253 (253)
2 cd05170 PIKKc_SMG1 Suppressor 100.0 1.8E-61 3.8E-66 505.1 22.6 239 277-564 1-307 (307)
3 cd05169 PIKKc_TOR TOR (Target 100.0 1.1E-60 2.3E-65 493.8 21.2 239 277-563 1-279 (280)
4 cd05171 PIKKc_ATM Ataxia telan 100.0 3.3E-60 7.1E-65 489.7 22.4 238 277-563 1-278 (279)
5 cd05172 PIKKc_DNA-PK DNA-depen 100.0 4E-60 8.6E-65 477.5 21.3 230 277-564 1-235 (235)
6 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1.8E-58 3.8E-63 466.2 22.6 232 277-564 1-237 (237)
7 KOG0890|consensus 100.0 1.6E-56 3.5E-61 533.0 17.0 265 275-588 2041-2343(2382)
8 cd05164 PIKKc Phosphoinositide 100.0 2.2E-55 4.7E-60 439.8 21.3 222 277-557 1-222 (222)
9 COG5032 TEL1 Phosphatidylinosi 100.0 3.7E-51 8E-56 508.4 23.4 294 10-563 1713-2040(2105)
10 cd00142 PI3Kc_like Phosphoinos 100.0 2.3E-50 4.9E-55 403.0 20.7 218 278-557 2-219 (219)
11 KOG0889|consensus 100.0 4.9E-49 1.1E-53 478.9 22.3 329 5-585 3125-3500(3550)
12 KOG0892|consensus 100.0 2E-49 4.3E-54 474.5 15.6 247 274-568 2440-2727(2806)
13 smart00146 PI3Kc Phosphoinosit 100.0 1.7E-47 3.7E-52 377.8 19.0 200 309-566 2-201 (202)
14 cd00891 PI3Kc Phosphoinositide 100.0 5.4E-46 1.2E-50 393.7 23.1 239 274-564 56-304 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 8.8E-45 1.9E-49 384.0 22.9 224 274-564 60-298 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 1.7E-44 3.7E-49 381.9 23.3 238 274-564 56-305 (353)
17 cd05165 PI3Kc_I Phosphoinositi 100.0 4.8E-44 1.1E-48 378.6 22.0 237 274-563 61-316 (366)
18 PF00454 PI3_PI4_kinase: Phosp 100.0 1.2E-44 2.7E-49 363.6 15.1 206 306-564 1-235 (235)
19 cd05168 PI4Kc_III_beta Phospho 100.0 4.4E-44 9.6E-49 370.1 17.9 211 290-558 14-234 (293)
20 cd05177 PI3Kc_C2_gamma Phospho 100.0 8.3E-43 1.8E-47 367.8 22.5 239 274-565 57-307 (354)
21 cd05174 PI3Kc_IA_delta Phospho 100.0 3.3E-42 7.1E-47 363.4 23.0 231 275-557 61-305 (361)
22 cd00894 PI3Kc_IB_gamma Phospho 100.0 6E-42 1.3E-46 361.9 22.8 230 275-557 63-309 (365)
23 cd05173 PI3Kc_IA_beta Phosphoi 100.0 1E-41 2.2E-46 360.5 22.4 239 274-564 60-312 (362)
24 cd00893 PI4Kc_III Phosphoinosi 100.0 4.1E-42 8.9E-47 354.9 17.2 211 293-563 17-238 (289)
25 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.2E-40 2.6E-45 350.2 22.7 235 275-562 57-303 (353)
26 cd05167 PI4Kc_III_alpha Phosph 100.0 3.2E-39 7E-44 335.9 22.1 228 275-563 8-260 (311)
27 cd00895 PI3Kc_C2_beta Phosphoi 100.0 6E-38 1.3E-42 329.9 23.3 231 275-557 58-299 (354)
28 cd05175 PI3Kc_IA_alpha Phospho 100.0 4E-38 8.8E-43 331.8 21.4 230 275-556 61-309 (366)
29 KOG0891|consensus 100.0 6.7E-37 1.5E-41 374.9 11.4 247 272-566 1954-2239(2341)
30 cd05163 TRRAP TRansformation/t 100.0 6.3E-31 1.4E-35 268.1 13.4 159 92-253 2-180 (253)
31 KOG0905|consensus 100.0 4.7E-30 1E-34 290.3 13.9 187 285-489 1062-1255(1639)
32 KOG0906|consensus 100.0 1.1E-27 2.4E-32 259.8 16.7 220 274-559 554-785 (843)
33 KOG0904|consensus 99.9 2.3E-27 5.1E-32 263.8 10.4 229 283-565 783-1029(1076)
34 cd05170 PIKKc_SMG1 Suppressor 99.9 5.1E-26 1.1E-30 238.2 13.1 155 92-253 2-235 (307)
35 cd05171 PIKKc_ATM Ataxia telan 99.9 1.1E-25 2.3E-30 233.0 13.7 154 92-253 2-207 (279)
36 cd05169 PIKKc_TOR TOR (Target 99.9 5.7E-25 1.2E-29 227.7 14.1 155 92-253 2-207 (280)
37 cd05172 PIKKc_DNA-PK DNA-depen 99.9 2.6E-23 5.5E-28 210.2 12.4 147 92-253 2-162 (235)
38 cd05164 PIKKc Phosphoinositide 99.9 1.9E-22 4.2E-27 202.2 12.3 142 92-253 2-157 (222)
39 KOG0903|consensus 99.9 7.8E-22 1.7E-26 218.1 15.9 223 305-588 586-825 (847)
40 cd00892 PIKKc_ATR ATR (Ataxia 99.9 7.5E-22 1.6E-26 199.8 12.7 147 92-253 2-165 (237)
41 PTZ00303 phosphatidylinositol 99.8 1.6E-20 3.5E-25 206.3 15.5 139 293-457 1027-1176(1374)
42 KOG0902|consensus 99.8 6.6E-20 1.4E-24 212.2 15.7 188 317-562 1553-1750(1803)
43 KOG0891|consensus 99.8 6.8E-21 1.5E-25 235.1 3.4 185 34-248 1925-2159(2341)
44 KOG0890|consensus 99.8 5.4E-20 1.2E-24 222.1 6.8 145 90-239 2042-2233(2382)
45 cd00142 PI3Kc_like Phosphoinos 99.8 1.3E-18 2.8E-23 174.3 11.6 139 93-253 3-154 (219)
46 KOG0892|consensus 99.6 1.6E-15 3.5E-20 185.0 10.0 154 93-253 2445-2651(2806)
47 cd05166 PI3Kc_II Phosphoinosit 99.5 1.8E-13 3.9E-18 145.8 13.8 138 93-239 61-216 (353)
48 cd00891 PI3Kc Phosphoinositide 99.5 2.4E-13 5.2E-18 145.0 12.8 140 93-239 61-217 (352)
49 PF00454 PI3_PI4_kinase: Phosp 99.5 7.3E-14 1.6E-18 140.5 8.2 128 120-253 1-160 (235)
50 smart00146 PI3Kc Phosphoinosit 99.5 1E-13 2.2E-18 137.3 8.3 112 122-253 1-126 (202)
51 cd00896 PI3Kc_III Phosphoinosi 99.4 3.9E-12 8.5E-17 135.6 13.6 130 93-239 65-216 (350)
52 cd05165 PI3Kc_I Phosphoinositi 99.3 6.7E-12 1.5E-16 134.1 13.4 141 93-239 66-226 (366)
53 cd05174 PI3Kc_IA_delta Phospho 99.3 3E-11 6.4E-16 128.8 14.6 138 95-239 68-222 (361)
54 cd05177 PI3Kc_C2_gamma Phospho 99.3 1.8E-11 3.9E-16 130.3 12.1 138 93-239 62-217 (354)
55 cd05173 PI3Kc_IA_beta Phosphoi 99.3 3.1E-11 6.6E-16 128.9 13.8 140 93-239 65-222 (362)
56 cd05176 PI3Kc_C2_alpha Phospho 99.2 6.6E-11 1.4E-15 125.7 13.6 133 98-239 67-216 (353)
57 KOG0889|consensus 99.2 1.3E-11 2.8E-16 154.3 7.9 119 135-255 3237-3411(3550)
58 COG5032 TEL1 Phosphatidylinosi 99.2 1.7E-11 3.8E-16 155.1 7.9 142 93-253 1781-1968(2105)
59 cd00894 PI3Kc_IB_gamma Phospho 99.2 1.9E-10 4E-15 122.9 12.9 136 97-239 72-226 (365)
60 cd05168 PI4Kc_III_beta Phospho 99.1 8.1E-11 1.8E-15 122.7 8.2 123 105-239 15-155 (293)
61 cd00895 PI3Kc_C2_beta Phosphoi 99.0 6.5E-09 1.4E-13 110.7 14.3 135 93-239 62-217 (354)
62 cd05167 PI4Kc_III_alpha Phosph 98.9 2.5E-08 5.4E-13 104.9 13.1 126 98-239 18-174 (311)
63 cd05175 PI3Kc_IA_alpha Phospho 98.8 4.1E-08 8.9E-13 104.8 12.6 134 93-239 65-225 (366)
64 cd00893 PI4Kc_III Phosphoinosi 98.8 9E-09 2E-13 107.3 7.4 106 118-239 30-153 (289)
65 KOG0906|consensus 97.2 0.0019 4.2E-08 72.6 10.2 53 98-154 565-618 (843)
66 KOG0905|consensus 96.6 0.01 2.3E-07 70.6 10.2 127 104-239 1066-1210(1639)
67 PTZ00303 phosphatidylinositol 94.9 0.047 1E-06 62.7 6.3 44 107-154 1027-1081(1374)
68 KOG0904|consensus 93.2 0.72 1.6E-05 54.3 11.5 192 115-355 804-1017(1076)
69 PF13575 DUF4135: Domain of un 86.5 5.2 0.00011 43.4 10.8 98 318-454 78-175 (370)
70 KOG0608|consensus 65.0 5.8 0.00013 46.0 3.4 36 416-456 739-778 (1034)
71 KOG0903|consensus 43.1 1.1E+02 0.0023 36.5 8.9 112 121-239 588-709 (847)
72 PF06293 Kdo: Lipopolysacchari 37.1 2.9E+02 0.0062 27.1 10.1 103 324-454 56-168 (206)
73 cd04792 LanM-like LanM-like pr 34.6 2.2E+02 0.0048 34.2 10.4 84 318-437 121-204 (825)
74 KOG0902|consensus 28.0 1.7E+02 0.0037 37.4 7.7 42 198-239 1617-1666(1803)
75 KOG0598|consensus 26.7 36 0.00078 36.9 1.7 24 427-455 150-173 (357)
76 cd05145 RIO1_like RIO kinase f 24.9 53 0.0012 31.6 2.4 24 425-454 141-164 (190)
77 cd05151 ChoK Choline Kinase (C 24.7 63 0.0014 29.7 2.8 29 420-454 106-134 (170)
78 KOG2345|consensus 23.7 8.9E+02 0.019 25.7 11.1 23 290-312 19-41 (302)
79 KOG0605|consensus 23.5 43 0.00093 38.2 1.6 27 427-458 266-292 (550)
80 KOG3087|consensus 22.2 8.5E+02 0.018 24.9 11.1 131 300-454 26-163 (229)
81 cd05147 RIO1_euk RIO kinase fa 22.2 55 0.0012 31.9 1.9 23 426-454 142-164 (190)
82 TIGR03724 arch_bud32 Kae1-asso 20.6 83 0.0018 30.0 2.8 24 425-454 113-136 (199)
No 1
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=3.6e-62 Score=497.30 Aligned_cols=243 Identities=44% Similarity=0.732 Sum_probs=213.6
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|++|.|+|+++.+++++||||+|+|+||+.|+||||.+ +++|+|+|||+|||++++|++|.+++||++|+|.+++|.||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~-~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~vi 79 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYP-AARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVV 79 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecC-CchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEE
Confidence 57999999999999999999999999999999999984 46999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhh-----hCCCCCCcHHHHH-HHhh----hhhhHhhHHHhHhHHHHHHHHhcCC
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQ-----IKIDYELPIVRYY-DRLG----TLQSRGNMTLQLALACFAEYVLHLT 426 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~-----~g~~~d~pi~~~~-~kl~----~~q~r~~Ft~slA~~S~~~Yilglg 426 (599)
||++++|||||++++.||+++|++.... ...-++.-+..|+ ++.. ++.+|++||.|+|++|++|||+|+|
T Consensus 80 PLs~~~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~~~r~~ft~s~A~~s~~gYilglg 159 (253)
T cd05163 80 PLSPQIRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSIN 159 (253)
T ss_pred EcCCccceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999752111 0112222233333 3332 3568999999999999999999999
Q ss_pred CCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCC
Q psy15442 427 RLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNR 506 (599)
Q Consensus 427 DRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE 506 (599)
||||+|||++..||+| +||||+++ |++ ++ ..+++||
T Consensus 160 dRh~~nili~~~tG~v----~hiDf~~~----------f~~----------------------~~--------~~~~~pE 195 (253)
T cd05163 160 NRNPDKIFISRDTGNV----YQSDLLPS----------INN----------------------NK--------PLFHNNE 195 (253)
T ss_pred CCCchhEEEEcCCCcE----EEEeeeee----------ecC----------------------CC--------cCCCCCC
Confidence 9999999999999999 99999976 332 11 1347999
Q ss_pred CCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 507 PVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 507 ~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
.|||||||||+++||++|+||+|+.+|+++++||+++++.|+++|++|++||+++|++
T Consensus 196 ~VPFRLT~ni~~~~g~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~~ 253 (253)
T cd05163 196 PVPFRLTPNIQHLIGPIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWHK 253 (253)
T ss_pred cCCcccCHHHHHHhCCcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999974
No 2
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=1.8e-61 Score=505.08 Aligned_cols=239 Identities=23% Similarity=0.303 Sum_probs=211.9
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|++|+|+|.|+. |+++||+|+++|+||+.|.||+|. +||+|+|||+||||++||.+|.++++|++|+|.+++|.||
T Consensus 1 I~~f~~~v~V~~-Sk~~Pkri~~~gsDG~~y~fLlK~---~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~Vi 76 (307)
T cd05170 1 IESVGSTVTILP-TKTKPKKLAFLGSDGKKYTYLFKG---REDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVT 76 (307)
T ss_pred CccccCeEEEEe-cCCCceEEEEECCCCCEEEEEecC---CCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEE
Confidence 578999999997 999999999999999999999954 6999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhhhCC---------C--------CCCcHHHHH----------------------
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQIKI---------D--------YELPIVRYY---------------------- 397 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~---------~--------~d~pi~~~~---------------------- 397 (599)
||++++|||||++++.||.+|++++|++.++ + .+.|...++
T Consensus 77 PLs~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 156 (307)
T cd05170 77 PLGPRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWP 156 (307)
T ss_pred EcCCCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhcc
Confidence 9999999999999999999999988765332 0 011222111
Q ss_pred --------HHh---------------------hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeee
Q psy15442 398 --------DRL---------------------GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFK 448 (599)
Q Consensus 398 --------~kl---------------------~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~h 448 (599)
+++ .++.+|++||.|+|++|++|||+|||||||+||||++.||++ +|
T Consensus 157 ~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v----~h 232 (307)
T cd05170 157 LSVLRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEV----VH 232 (307)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcE----EE
Confidence 111 123468999999999999999999999999999999999999 99
Q ss_pred eeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcc
Q psy15442 449 FDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGP 528 (599)
Q Consensus 449 iDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~ 528 (599)
|||+++ |++ |..+++||.|||||||||+++||+.|++|.
T Consensus 233 iDf~~~----------f~~-------------------------------~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~ 271 (307)
T cd05170 233 IDYNVC----------FEK-------------------------------GKSLRIPEKVPFRMTQNIETALGLTGVEGV 271 (307)
T ss_pred EeeHhh----------hcc-------------------------------cCCCCCCCCCCeeeCHHHHHHhCCCCCchh
Confidence 999987 432 124789999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 529 LTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 529 F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
|+.+|++++++||++++.|+++|++|++||+++|..
T Consensus 272 f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~~ 307 (307)
T cd05170 272 FRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTA 307 (307)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccccC
Confidence 999999999999999999999999999999999963
No 3
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=1.1e-60 Score=493.85 Aligned_cols=239 Identities=27% Similarity=0.415 Sum_probs=213.5
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|++|+|+|.|++ |+++||+|+++|+||+.|+|+||. +||+|+|||++||+++||.+|.+++||++|+|.+++|.||
T Consensus 1 I~~f~~~v~v~~-s~~~pk~i~~~gsdG~~y~fl~K~---~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vi 76 (280)
T cd05169 1 ISSFDPVLKVIP-SKQRPRRLTIVGSDGKEYKFLLKG---HEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVI 76 (280)
T ss_pred CccccCeEEEEe-CCCCCeEEEEECCCCCEEEEeecC---CCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEE
Confidence 578999999999 899999999999999999999964 6999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHH-------------------HHHHh-----------------
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVR-------------------YYDRL----------------- 400 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~-------------------~~~kl----------------- 400 (599)
|+++++|||||+++++||.+|++++++..|...+.+... .++++
T Consensus 77 pls~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~ 156 (280)
T cd05169 77 PLSPNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKS 156 (280)
T ss_pred ecCCCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 999999999999999999999999987766544321100 00110
Q ss_pred ----hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHH
Q psy15442 401 ----GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIF 476 (599)
Q Consensus 401 ----~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~ 476 (599)
.++++|++|+.|+|++|++|||+|||||||+|||+++.||++ +|||||++ |++
T Consensus 157 ~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v----~HIDfg~~----------f~~--------- 213 (280)
T cd05169 157 PSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKV----IHIDFGDC----------FEV--------- 213 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCE----EEEecHHH----------Hhh---------
Confidence 124579999999999999999999999999999999999999 99999987 432
Q ss_pred hhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy15442 477 RQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILR 556 (599)
Q Consensus 477 ~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~ 556 (599)
|+ +.+++||.|||||||||+++||+.|++|.|+.+|++++++||++++.|+++|++|++
T Consensus 214 -------------~~--------~~~~~pE~VPFRLT~~~~~~lG~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~ 272 (280)
T cd05169 214 -------------AM--------HREKFPEKVPFRLTRMLVNALGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVH 272 (280)
T ss_pred -------------cc--------ccCCCCCcCCcccCHHHHHHhCCCCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 11 124789999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhh
Q psy15442 557 DEMIAIQ 563 (599)
Q Consensus 557 Dpl~~W~ 563 (599)
||+++|.
T Consensus 273 dpl~~W~ 279 (280)
T cd05169 273 DPLLSWR 279 (280)
T ss_pred Ccccccc
Confidence 9999996
No 4
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=3.3e-60 Score=489.70 Aligned_cols=238 Identities=21% Similarity=0.276 Sum_probs=209.7
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|.+|.|.|.|++ |+++||||+|+|+||+.|.||||. +||+|+|||+|||+++||++|.+++||++|+|.+++|.|+
T Consensus 1 ~~~f~~~v~v~~-s~~~Pkri~~~gsdG~~y~fl~K~---~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vi 76 (279)
T cd05171 1 VSKFKDVFTTAG-GINAPKIITCVGSDGKKYKQLLKG---GDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVV 76 (279)
T ss_pred CCCccCeEEEec-CCCCCEEEEEECCCCCEEEEEecC---CCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEE
Confidence 468999999999 899999999999999999999965 6999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhhhCCC-CCC-cHH------------------HHHHHh----------------
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQIKID-YEL-PIV------------------RYYDRL---------------- 400 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~-~d~-pi~------------------~~~~kl---------------- 400 (599)
||++++|||||+++++||++|++++++..+.. +.. ... ..++++
T Consensus 77 pls~~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 77 PLSPRAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred ecCCCceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999999999886422211 100 000 000110
Q ss_pred ----hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHH
Q psy15442 401 ----GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIF 476 (599)
Q Consensus 401 ----~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~ 476 (599)
.++++|++|+.|+|++|++|||+|||||||+||||++.||+| +||||+++ |++
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v----~hiDf~~~----------f~~--------- 213 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEV----VHIDLGIA----------FEQ--------- 213 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcE----EEEechhh----------hcc---------
Confidence 124579999999999999999999999999999999999999 99999987 432
Q ss_pred hhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy15442 477 RQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILR 556 (599)
Q Consensus 477 ~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~ 556 (599)
|..+++||.|||||||||+++||+.|++|.|+.+|++++++|+++++.|+++|++|+|
T Consensus 214 ----------------------~~~l~~pe~vPFRLT~~~~~~lg~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~ 271 (279)
T cd05171 214 ----------------------GKILPVPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLY 271 (279)
T ss_pred ----------------------CcCCCCCCcCChhhhHHHHHHhCCCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHh
Confidence 1137899999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhh
Q psy15442 557 DEMIAIQ 563 (599)
Q Consensus 557 Dpl~~W~ 563 (599)
||+++|.
T Consensus 272 dpl~~W~ 278 (279)
T cd05171 272 DPLYSWT 278 (279)
T ss_pred Ccccccc
Confidence 9999996
No 5
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=4e-60 Score=477.50 Aligned_cols=230 Identities=23% Similarity=0.395 Sum_probs=208.6
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|++|+|+|.|+. |+++||+|+|+|+||+.|+|++|. +||+|+|||+||+++++|.+|.++++|++|+|.+++|.|+
T Consensus 1 i~~~~~~v~v~~-S~~~Pkri~~~~~dG~~~~fl~K~---~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vi 76 (235)
T cd05172 1 IVGFDERVLVLS-SLRKPKRITIRGSDEKEYPFLVKG---GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVI 76 (235)
T ss_pred CCCcCCceEEec-cCCCCEEEEEECCCCCEEEEEEEC---CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEE
Confidence 568999999998 899999999999999999999965 5999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHH-----hhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCC
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDR-----LGTLQSRGNMTLQLALACFAEYVLHLTRLNPD 431 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~k-----l~~~q~r~~Ft~slA~~S~~~YilglgDRhp~ 431 (599)
|+++++|||||+++++||++|+++. -+..++-+ -.+.++|++|+.|+|++|++||++|||||||+
T Consensus 77 pls~~~GlIE~v~~~~sl~~i~~~~----------~l~~~~~~~~~~~~~~~~~r~~F~~S~A~~S~~~YilglgDRH~~ 146 (235)
T cd05172 77 PMTPRFGLIEWLENTTPLKEILKND----------LLRRALVEMSASPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLS 146 (235)
T ss_pred EeCCCCceEEEcCCchhHHHHHhhH----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhheeeccCCCcc
Confidence 9999999999999999999999871 12222211 12456799999999999999999999999999
Q ss_pred ceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCccc
Q psy15442 432 MMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFR 511 (599)
Q Consensus 432 nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFR 511 (599)
|||+++.||++ +||||++++|. ++ +.+++||.||||
T Consensus 147 NIli~~~tG~v----~HIDfg~~f~~--------------------------------~~--------~~~~~pE~vPFR 182 (235)
T cd05172 147 NFLVDLETGGL----VGIDFGHAFGT--------------------------------AT--------QFLPIPELMPFR 182 (235)
T ss_pred cEEEECCCCcE----EEEeeHhhhcc--------------------------------CC--------ccCCCCCCCCee
Confidence 99999999999 99999988432 11 136889999999
Q ss_pred ccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 512 LTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 512 LT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
|||||+++||+.|+||.|+.+|+++++|||++++.|+++|++|++||+++|..
T Consensus 183 LT~~~~~~~g~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~~ 235 (235)
T cd05172 183 LTPQFVNLMEPMKADGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWKN 235 (235)
T ss_pred eCHHHHHHhCCCCCCChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhcC
Confidence 99999999999999999999999999999999999999999999999999963
No 6
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1.8e-58 Score=466.24 Aligned_cols=232 Identities=22% Similarity=0.381 Sum_probs=211.1
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|.+|+++|.|+. |+++||+|++.|+||+.|.|++|. +||+|+|||+||+++++|.+|.++++|++++|.+++|.|+
T Consensus 1 i~~~~~~~~v~~-s~~~P~~i~~~~~dG~~~~~l~K~---~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vi 76 (237)
T cd00892 1 ISGFEDEVEILN-SLQKPKKITLIGSDGNSYPFLCKP---KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVI 76 (237)
T ss_pred CccccCeEEEEe-ccCCceEEEEEcCCCCEEEEEEeC---CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEE
Confidence 568999999999 889999999999999999999965 6999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHH-HHh----hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCC
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYY-DRL----GTLQSRGNMTLQLALACFAEYVLHLTRLNPD 431 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~-~kl----~~~q~r~~Ft~slA~~S~~~YilglgDRhp~ 431 (599)
|+++++|||||+++++||.+|+++++. ..+..|+ ++. .+.++|++|+.|+|++|++|||+|||||||+
T Consensus 77 pl~~~~GlIE~v~~~~sl~~i~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilgigDRh~~ 149 (237)
T cd00892 77 PLNEECGIIEWVPNTATLRSILLEIYP-------PVFHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHGE 149 (237)
T ss_pred EcCCCCceEEECCCCccHHHHHHHhCC-------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 999999999999999999999998761 1233332 222 3456899999999999999999999999999
Q ss_pred ceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCccc
Q psy15442 432 MMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFR 511 (599)
Q Consensus 432 nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFR 511 (599)
|||+++.||++ +|||||+++|. |..+++||.||||
T Consensus 150 NIli~~~tG~~----~HIDfg~~~~~-----------------------------------------~~~~~~pe~vPFR 184 (237)
T cd00892 150 NILFDSNTGDV----VHVDFNCLFDK-----------------------------------------GETLEVPERVPFR 184 (237)
T ss_pred cEEEEcCCCcE----EEEehHhhhcc-----------------------------------------cccCCCCCCCCcc
Confidence 99999999999 99999988431 1246899999999
Q ss_pred ccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 512 LTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 512 LT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
|||||+++||+.|++|.|+.+|++++++||++++.|+++|++|++||+++|.+
T Consensus 185 LT~~~~~~lg~~g~~g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~~ 237 (237)
T cd00892 185 LTQNMVDAMGVLGVEGLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWSK 237 (237)
T ss_pred cCHHHHHHhCCCCCCCchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhccC
Confidence 99999999999999999999999999999999999999999999999999973
No 7
>KOG0890|consensus
Probab=100.00 E-value=1.6e-56 Score=533.01 Aligned_cols=265 Identities=23% Similarity=0.362 Sum_probs=229.5
Q ss_pred EEEEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccce
Q psy15442 275 ILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPR 354 (599)
Q Consensus 275 ~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ 354 (599)
.+|.+|++.|+|+. |.++||+|+++||||+.|.|+||+ +||+|+|.|+|++-.++|++|.||.|+|+|.|+++||+
T Consensus 2041 ~~IsgF~d~V~Il~-SLqKPKkI~l~GsDGk~Y~~lCKp---KDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYa 2116 (2382)
T KOG0890|consen 2041 PYISGFSDEVKILN-SLQKPKKIKLRGSDGKIYPFLCKP---KDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYA 2116 (2382)
T ss_pred hhhhcchHHHHHHH-hccCCeEEEEEcCCCCEeEEEeCc---hhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEE
Confidence 48999999999999 999999999999999999999987 59999999999999999999999999999999999999
Q ss_pred EEecCCCceeEEeCCCCccHHHHHHHhhhhhCC------------------C-----------CCC-cHH--HHH----H
Q psy15442 355 VVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKI------------------D-----------YEL-PIV--RYY----D 398 (599)
Q Consensus 355 ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~------------------~-----------~d~-pi~--~~~----~ 398 (599)
||||+..||+|||++++.+|++|..+.....|. + +.. |+. .+. +
T Consensus 2117 ViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPe 2196 (2382)
T KOG0890|consen 2117 VIPLNEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPE 2196 (2382)
T ss_pred EeecCCccceEEecCCcchHHHHHHHHHHhccccchhhHHHHhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCC
Confidence 999999999999999999999998775421110 0 000 221 111 3
Q ss_pred HhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhh
Q psy15442 399 RLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQ 478 (599)
Q Consensus 399 kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~ 478 (599)
..+|+.+|.+|++|+|+|||+|||+||||||.+|||+|..||++ +|+||++. |+
T Consensus 2197 P~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdc----VHVDFnCL----------Fn------------ 2250 (2382)
T KOG0890|consen 2197 PGSWFASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDC----VHVDFNCL----------FN------------ 2250 (2382)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcE----EEEeeccc----------cc------------
Confidence 34567899999999999999999999999999999999999999 99999953 44
Q ss_pred hcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhccc
Q psy15442 479 KNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDE 558 (599)
Q Consensus 479 k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dp 558 (599)
+|..|++||.||||||+||+++|||+|.||.|+.+|+.|++.||++++.++++|+.|++||
T Consensus 2251 -------------------KGetlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DP 2311 (2382)
T KOG0890|consen 2251 -------------------KGETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFVYDP 2311 (2382)
T ss_pred -------------------CCcccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHHhCc
Confidence 2568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccC-CCCCcccc-hhhHHhhccCCC
Q psy15442 559 MIAIQKKVKC-SYLPIIIN-FQNREMGGKLEK 588 (599)
Q Consensus 559 l~~W~~~~~~-~~~~~~~~-~~~~~~~~~l~~ 588 (599)
++.|....+. ...|+.++ ..+-.++++|++
T Consensus 2312 lvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG 2343 (2382)
T KOG0890|consen 2312 LVEWNRPSKGRSPKKINEDRLVIGRIRGRLQG 2343 (2382)
T ss_pred hhhccCcccCCCcCcccchHHHHhHHHHHHhc
Confidence 9999987775 34555555 233334456666
No 8
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=2.2e-55 Score=439.83 Aligned_cols=222 Identities=25% Similarity=0.314 Sum_probs=202.3
Q ss_pred EEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEE
Q psy15442 277 FYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVV 356 (599)
Q Consensus 277 i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~Vi 356 (599)
|++|+|+|.|+. |+++||+|+++|+||+.|.|++|. +||+|+|||++|+++++|.+|.+++||+++++.+++|.|+
T Consensus 1 i~~~~~~v~v~~-S~~~P~~i~~~~~dG~~~~fl~K~---~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vi 76 (222)
T cd05164 1 IASFDDAVRILG-SKQKPKKITLTGSDGKKYLFLVKG---GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVI 76 (222)
T ss_pred CccccCeeEEec-ccCCCEEEEEECCCCCEEEEEEeC---CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEE
Confidence 568999999998 899999999999999999999965 5999999999999999999999999999999999999999
Q ss_pred ecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEE
Q psy15442 357 PVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLH 436 (599)
Q Consensus 357 PLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~ 436 (599)
|+++++|||||+++++||++++.++......++ -.+..+|++|+.|+|++|+++|++|+|||||+|||++
T Consensus 77 pls~~~GliE~v~~~~sl~~~l~~~~~~~~~~~----------~~~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~ 146 (222)
T cd05164 77 PLNSRSGLIEWVEGTTTLKPVLKKWFWLQFPDP----------EQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILID 146 (222)
T ss_pred EcCCCCceEEEcCCcchHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEE
Confidence 999999999999999999999887753322111 1234568999999999999999999999999999999
Q ss_pred cCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHH
Q psy15442 437 RDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNI 516 (599)
Q Consensus 437 ~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni 516 (599)
+.||++ +||||++++|. |..+++||.|||||||||
T Consensus 147 ~~tG~v----~hIDf~~~~~~-----------------------------------------~~~~~~~e~vPFRLT~~~ 181 (222)
T cd05164 147 RETGEV----VHIDFGCIFEK-----------------------------------------GKTLPVPELVPFRLTRNI 181 (222)
T ss_pred CCCCcE----EEEccHHhhcc-----------------------------------------CCCCCCCCCCCEEeCHHH
Confidence 999999 99999987431 124677999999999999
Q ss_pred HHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhcc
Q psy15442 517 MEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRD 557 (599)
Q Consensus 517 ~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~D 557 (599)
+++||+.|++|.|+.+|+++++||+++++.|+++|++|++|
T Consensus 182 ~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 182 INGMGITGVEGLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred HHHhCCCCcCChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999998
No 9
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.7e-51 Score=508.39 Aligned_cols=294 Identities=31% Similarity=0.432 Sum_probs=261.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCCcccccccCchhhccCCCCCeEecCCccCCCCCCCceEEEeCCchhhhhhhhhccc
Q psy15442 10 KLHNLISKLKKWIKILEAKNKLLPKSCLIEEKCRYLSNFNLHTAEIELPGEYLLPKHSHYYVRISSPISELRMIHKVYSI 89 (599)
Q Consensus 10 ~l~~~~~~l~~W~~~le~~~~~~p~~~~L~~~S~~L~~f~~~~~~ievPGqy~~~~~~~~~vri~~~~~~~~~~~~~~~~ 89 (599)
...-+++.+++|++.+++..+...+. ++|.+..++. +.++++||||...++ .|+|+
T Consensus 1713 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~e~~~P~~~~~~k~---~v~I~--------------- 1768 (2105)
T COG5032 1713 SRKLYISVLRSIRKRLKRLLELRLKK-----VSPKLLLFHA-FLEIKLPGQYLLDKP---FVLIE--------------- 1768 (2105)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHhcc-----cCHHHHhccc-cccccCCcccccCCC---CceEE---------------
Confidence 34445689999999999998887766 8999999997 789999999998865 89999
Q ss_pred ccccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccccccccc
Q psy15442 90 LFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKMVYISLL 169 (599)
Q Consensus 90 ~~~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~s~~~L~ 169 (599)
+|.|++.++.++.++|||++++|+||+.|+|++|++
T Consensus 1769 ---~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~~----------------------------------------- 1804 (2105)
T COG5032 1769 ---RFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKGG----------------------------------------- 1804 (2105)
T ss_pred ---EecCceeeeecccccceEEEEEecCCcEEEEEeecC-----------------------------------------
Confidence 999999999988899999999999999999999882
Q ss_pred ccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccccCccceeeecCCCCCCCc
Q psy15442 170 YCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFFGQNLHHHFRVPGKKTFWISPSMGSDR 249 (599)
Q Consensus 170 ~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l~yiLgigdR~P~ki~F~vsps~gsv~ 249 (599)
T Consensus 1805 -------------------------------------------------------------------------------- 1804 (2105)
T COG5032 1805 -------------------------------------------------------------------------------- 1804 (2105)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCcchhhhccccceEEEEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHH
Q psy15442 250 QTDTEANNIVCSPISELRMIHKVYSILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQL 329 (599)
Q Consensus 250 ~tDles~ni~~~p~~~~~~~~~~~~~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql 329 (599)
||+|||+|+||+
T Consensus 1805 --------------------------------------------------------------------dDlRQD~~~~Ql 1816 (2105)
T COG5032 1805 --------------------------------------------------------------------DDLRQDELALQL 1816 (2105)
T ss_pred --------------------------------------------------------------------ccchHHHHHHHH
Confidence 788999999999
Q ss_pred HHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcH----------------
Q psy15442 330 LRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPI---------------- 393 (599)
Q Consensus 330 ~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi---------------- 393 (599)
+++||++|.++++|+||++.+++|.|+|++|++|+|||+|+++||++|.++++++.++..|...
T Consensus 1817 ~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 1896 (2105)
T COG5032 1817 IRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKKLAARLDNLKLLLKDE 1896 (2105)
T ss_pred HHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHhhhhhhhhhhcccchhH
Confidence 9999999999999999999999999999999999999999999999999999997666532211
Q ss_pred ------------H--HHHH----HhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCcc
Q psy15442 394 ------------V--RYYD----RLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSK 455 (599)
Q Consensus 394 ------------~--~~~~----kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~ 455 (599)
. .+++ ...+..+|+|||+|+|+|||+||+||+|||||+|||+|+.||++ +|||||+|+
T Consensus 1897 ~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~v----iHiDFg~il 1972 (2105)
T COG5032 1897 FFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHV----IHIDFGFIL 1972 (2105)
T ss_pred HhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcE----EEehHHHHH
Confidence 0 0111 12345689999999999999999999999999999999999999 999999874
Q ss_pred ccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHH
Q psy15442 456 GEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIA 535 (599)
Q Consensus 456 g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~ 535 (599)
+. .|+.+++||.||||||+||+++||+.|+||.|+.+|+.
T Consensus 1973 ~~----------------------------------------~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~ 2012 (2105)
T COG5032 1973 FN----------------------------------------APGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCET 2012 (2105)
T ss_pred hc----------------------------------------CCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHH
Confidence 32 12368899999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHhccchhhhh
Q psy15442 536 TARCLVQPNFQVHAILKAILRDEMIAIQ 563 (599)
Q Consensus 536 ~~~~L~~~~~~l~~~L~~fl~Dpl~~W~ 563 (599)
++++||++.+.|++++++|++||+++|.
T Consensus 2013 ~~~~LRk~~~~L~~~le~f~~d~l~~W~ 2040 (2105)
T COG5032 2013 AFRALRKNADSLMNVLELFVRDPLIEWR 2040 (2105)
T ss_pred HHHHHhccHHHHHHHHHHHhcCcchhhh
Confidence 9999999999999999999999999999
No 10
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.3e-50 Score=402.99 Aligned_cols=218 Identities=30% Similarity=0.374 Sum_probs=195.9
Q ss_pred EEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEe
Q psy15442 278 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVP 357 (599)
Q Consensus 278 ~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViP 357 (599)
+.|.+.+.|+. |+++||+|+++|+||+.|.|++|. +||+|+|||++|+++++|.+|.+++ ++++.+++|.|+|
T Consensus 2 ~~~~~~~~v~~-s~~~P~~l~~~~~dg~~~~~l~K~---~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vip 74 (219)
T cd00142 2 AIDVKICRIMP-SKTRPKKLTLIGADGKEYRILFKN---GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIP 74 (219)
T ss_pred CccCCceEEEc-ccCCCEEEEEEccCCCEEEEEEeC---CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEE
Confidence 46789999999 889999999999999999999976 5999999999999999999999886 6899999999999
Q ss_pred cCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEc
Q psy15442 358 VSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHR 437 (599)
Q Consensus 358 Ls~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~ 437 (599)
+++++|||||++++.|+..++.++......++ -.+.++|++|+.|+|++|+++|++|+|||||+|||+++
T Consensus 75 ls~~~GlIE~v~~~~sl~~~l~~~~~~~~~~~----------~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~ 144 (219)
T cd00142 75 LSPRSGLIEVVPGSVTLEDDLSKWLKRKSPDE----------DEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMIDL 144 (219)
T ss_pred ecCCceEEEEeCCCchhHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEEC
Confidence 99999999999999999977776654332211 13456789999999999999999999999999999999
Q ss_pred CCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHH
Q psy15442 438 DCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIM 517 (599)
Q Consensus 438 ~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~ 517 (599)
.||++ +||||++++|. + ..+..||.|||||||||+
T Consensus 145 ~~G~~----~hIDfg~~~~~--------------------------------~---------~~~~~~e~vPFRLT~~~~ 179 (219)
T cd00142 145 DTGKL----FHIDFGFIFGK--------------------------------R---------KKFLGRERVPFRLTPDLV 179 (219)
T ss_pred CCCeE----EEEeeHHhhCc--------------------------------C---------cCCCCCCCCCEeccHHHH
Confidence 99999 99999988542 0 123459999999999999
Q ss_pred HHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhcc
Q psy15442 518 EFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRD 557 (599)
Q Consensus 518 ~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~D 557 (599)
++||+.|++|.|+.+|++++++||++++.+.++|++|++|
T Consensus 180 ~~~g~~~~~g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 180 NALGTGGVFGPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred HHhCCcchhhhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999987
No 11
>KOG0889|consensus
Probab=100.00 E-value=4.9e-49 Score=478.86 Aligned_cols=329 Identities=44% Similarity=0.725 Sum_probs=296.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccccccCchhhccCCCCCeEecCCccCCCCCCC-ceEEEeCCchhhhhh
Q psy15442 5 VPGATKLHNLISKLKKWIKILEAKNKLLPKSCLIEEKCRYLSNFNLHTAEIELPGEYLLPKHSH-YYVRISSPISELRMI 83 (599)
Q Consensus 5 ~~~~~~l~~~~~~l~~W~~~le~~~~~~p~~~~L~~~S~~L~~f~~~~~~ievPGqy~~~~~~~-~~vri~~~~~~~~~~ 83 (599)
.|++..+.+|+.+|++|++.+|+++++.|+..+||+.|++|++|++++.|+|+||||+.+|+.+ ++|+|+
T Consensus 3125 ~~~~~~l~~~i~klk~w~~~le~k~~~~pk~~~LE~~s~~L~~F~hq~~evEiPGqyl~~k~~~~~~v~I~--------- 3195 (3550)
T KOG0889|consen 3125 MKCICDLENYIDKLRKWRSRLESKVDRFPKKLNLEEKSRFLSNFSHQFDEVEIPGQYLLDKSNNNYFVKIE--------- 3195 (3550)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcccccccHHhhchHHhcccccCCcccCChHHhcccchhhhhhhHH---------
Confidence 4678899999999999999999999999999999999999999997799999999999999855 889999
Q ss_pred hhhcccccccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc
Q psy15442 84 HKVYSILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM 163 (599)
Q Consensus 84 ~~~~~~~~~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~ 163 (599)
||+|+|++|++++.+.||++|||+||+.|+|.++.++.
T Consensus 3196 ---------RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~--------------------------------- 3233 (3550)
T KOG0889|consen 3196 ---------RFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGL--------------------------------- 3233 (3550)
T ss_pred ---------HhccchhhhcccceeEEEEEEeccCCeecceeeecccC---------------------------------
Confidence 99999999999999999999999999999999998521
Q ss_pred ccccccccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccccCccceeeecCC
Q psy15442 164 VYISLLYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFFGQNLHHHFRVPGKKTFWISP 243 (599)
Q Consensus 164 s~~~L~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l~yiLgigdR~P~ki~F~vsp 243 (599)
T Consensus 3234 -------------------------------------------------------------------------------- 3233 (3550)
T KOG0889|consen 3234 -------------------------------------------------------------------------------- 3233 (3550)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccccccccccCcchhhhccccceEEEEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhh
Q psy15442 244 SMGSDRQTDTEANNIVCSPISELRMIHKVYSILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRD 323 (599)
Q Consensus 244 s~gsv~~tDles~ni~~~p~~~~~~~~~~~~~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~D 323 (599)
.+.|+|
T Consensus 3234 --------------------------------------------------------------------------~~sRre 3239 (3550)
T KOG0889|consen 3234 --------------------------------------------------------------------------RNSRRE 3239 (3550)
T ss_pred --------------------------------------------------------------------------CCccHH
Confidence 234778
Q ss_pred HHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhhhh
Q psy15442 324 ERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTL 403 (599)
Q Consensus 324 eRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~~ 403 (599)
||++|+++++|.+|.+++||+||++.+.+|.+||++++++|+|+.|+++||++||+++|++.|.++|.|+..|+++++..
T Consensus 3240 ErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~ 3319 (3550)
T KOG0889|consen 3240 ERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQA 3319 (3550)
T ss_pred HHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHH
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999888641
Q ss_pred h----------------------------------------------hHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEc
Q psy15442 404 Q----------------------------------------------SRGNMTLQLALACFAEYVLHLTRLNPDMMYLHR 437 (599)
Q Consensus 404 q----------------------------------------------~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~ 437 (599)
+ .|++|+.|+|..++++|++.++.|.|+.+++.+
T Consensus 3320 ~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~ 3399 (3550)
T KOG0889|consen 3320 YSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAK 3399 (3550)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccceeeee
Confidence 1 278999999999999999999999999999999
Q ss_pred CCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHH
Q psy15442 438 DCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIM 517 (599)
Q Consensus 438 ~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~ 517 (599)
+||.+++.+++.+..+. ++ .++..|+|||||||||+
T Consensus 3400 dsG~v~~~~~~~~~~~~------------------------------------~~--------~~~~~~~VpFRlTpni~ 3435 (3550)
T KOG0889|consen 3400 DSGKVFNTDFLPSYISS------------------------------------KP--------IFHNNEPVPFRLTPNIQ 3435 (3550)
T ss_pred ccccccchhhccCcccC------------------------------------cc--------ccccCCcCCeeecCCch
Confidence 99999776555444332 11 36789999999999999
Q ss_pred HHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhhhccCCCCCcccchhhHHhhcc
Q psy15442 518 EFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQKKVKCSYLPIIINFQNREMGGK 585 (599)
Q Consensus 518 ~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~~~~~~~~~~~~~~~~~~~~~~ 585 (599)
.++|..|+||.+..+|.++++||.++.+.+..++..|+||++++|+..+. .+.+.+.++.+++.+
T Consensus 3436 ~~i~~~~veg~l~~s~~a~ar~l~~p~~~l~~~l~~~~RDE~~~w~~~~~---~~~~~~~~~~~~v~~ 3500 (3550)
T KOG0889|consen 3436 EFIGDFGVEGLLAGSMMAIARCLIEPDFELDPYLQLFFRDEIISWFKQQT---KGVPADPLLEEMVNS 3500 (3550)
T ss_pred hhhcchhhhhhhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHhhccc---cCCcCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999998 666667666665543
No 12
>KOG0892|consensus
Probab=100.00 E-value=2e-49 Score=474.52 Aligned_cols=247 Identities=23% Similarity=0.318 Sum_probs=220.2
Q ss_pred eEEEEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccc
Q psy15442 274 SILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVP 353 (599)
Q Consensus 274 ~~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y 353 (599)
.++|.+|..+|.+.. ....||.|++.||||++|..|||- |+||+|||+-|.|+|.++|++|..+++|++|+|.++||
T Consensus 2440 ~p~i~s~~~~v~~~~-GinaPkiI~c~gSDG~~~kqLVK~--gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTY 2516 (2806)
T KOG0892|consen 2440 IPTVVSFDDTVTFAG-GINAPKVITCVGSDGKTYKQLVKG--GNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTY 2516 (2806)
T ss_pred CceEEecccceeeec-CccCCeEEEEEccCchhHHHHHhc--ccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEE
Confidence 599999999999999 899999999999999999999964 57999999999999999999999999999999999999
Q ss_pred eEEecCCCceeEEeCCCCccHHHHHHHhh----hhhCCC------------------CC-------------CcHHHH--
Q psy15442 354 RVVPVSAQLRLVEDNPASLSLLDIYKTSC----SQIKID------------------YE-------------LPIVRY-- 396 (599)
Q Consensus 354 ~ViPLs~~~gLIE~v~~~~tL~~i~~~~~----~~~g~~------------------~d-------------~pi~~~-- 396 (599)
+||||+|+.|++||+.+++++.|+..... ++++.+ .+ .|+.+|
T Consensus 2517 KVvPls~~sGvlEwv~~tiplgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFf 2596 (2806)
T KOG0892|consen 2517 KVIPLSPKAGVLEWVTNTIPLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFF 2596 (2806)
T ss_pred eeeecCcccceeecccCCeehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHH
Confidence 99999999999999999999999876211 011100 00 144333
Q ss_pred HHHh----hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchh
Q psy15442 397 YDRL----GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSA 472 (599)
Q Consensus 397 ~~kl----~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~ 472 (599)
.|++ -|+.+|.+||+|.|+.||+|||+||||||..|||||..||+| +|||+|.+ ||+
T Consensus 2597 lEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEv----iHIDlGiA----------FEQ----- 2657 (2806)
T KOG0892|consen 2597 LEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEV----IHIDLGIA----------FEQ----- 2657 (2806)
T ss_pred HHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccce----EEEeeeee----------hhc-----
Confidence 2443 356789999999999999999999999999999999999999 99999987 885
Q ss_pred HHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHH
Q psy15442 473 KEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILK 552 (599)
Q Consensus 473 ~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~ 552 (599)
|..|+.||.|||||||+||+.||.+||||+||.||+.|+.+||.+++.++++|+
T Consensus 2658 --------------------------GkilptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltile 2711 (2806)
T KOG0892|consen 2658 --------------------------GKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILE 2711 (2806)
T ss_pred --------------------------CCcCCCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 337999999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhhhhhccC
Q psy15442 553 AILRDEMIAIQKKVKC 568 (599)
Q Consensus 553 ~fl~Dpl~~W~~~~~~ 568 (599)
++++|||.+|.....|
T Consensus 2712 Vl~yDPLf~W~msplK 2727 (2806)
T KOG0892|consen 2712 VLLYDPLFSWLMSPLK 2727 (2806)
T ss_pred HHHhcchHHHhhcHHH
Confidence 9999999999876654
No 13
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=1.7e-47 Score=377.83 Aligned_cols=200 Identities=30% Similarity=0.399 Sum_probs=176.8
Q ss_pred eEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCC
Q psy15442 309 YLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKID 388 (599)
Q Consensus 309 flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~ 388 (599)
|++ |++||+|+|||++|+++++|.+|.+++|++++++.+++|.|+|+++++|||||+++++|+++|+.++..+..-+
T Consensus 2 ~~~---K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~il~~~~~~~~~~ 78 (202)
T smart00146 2 VIF---KGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQILYDWFKKKFPD 78 (202)
T ss_pred eee---cCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHHHHHHHHHHCcC
Confidence 677 45799999999999999999999999999999999999999999999999999999999999976664432211
Q ss_pred CCCcHHHHHHHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcc
Q psy15442 389 YELPIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENL 468 (599)
Q Consensus 389 ~d~pi~~~~~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~ 468 (599)
| -.+..+|++|+.|+|++|+++|++|+|||||+|||++ +||++ +||||++++|.
T Consensus 79 ---~-------~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~-~~G~v----~hIDfg~~~~~----------- 132 (202)
T smart00146 79 ---P-------EDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLD-KTGHL----FHIDFGFILGN----------- 132 (202)
T ss_pred ---H-------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEe-CCCCE----EEEechhhhCc-----------
Confidence 1 1345578999999999999999999999999999999 79999 99999987442
Q ss_pred cchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHH
Q psy15442 469 SDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVH 548 (599)
Q Consensus 469 ~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~ 548 (599)
+.+ .+..+|.|||||||||+++||+.|++|.|+..|++++++|+++++.++
T Consensus 133 ---------------------~~~--------~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~ 183 (202)
T smart00146 133 ---------------------GPK--------LFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIM 183 (202)
T ss_pred ---------------------ccc--------CCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHH
Confidence 011 233459999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhhhhhhc
Q psy15442 549 AILKAILRDEMIAIQKKV 566 (599)
Q Consensus 549 ~~L~~fl~Dpl~~W~~~~ 566 (599)
++|++|++||+.+|....
T Consensus 184 ~~l~~~~~d~l~~~~~~~ 201 (202)
T smart00146 184 SLLELMLYDGLPDWRSGK 201 (202)
T ss_pred HHHHHHcCCCChhhcCCC
Confidence 999999999999998653
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=5.4e-46 Score=393.74 Aligned_cols=239 Identities=18% Similarity=0.227 Sum_probs=208.9
Q ss_pred eEEEEEEec-eEEEeeccccceeEEEEEecC--CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCcee
Q psy15442 274 SILFYRFMP-RVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHF 350 (599)
Q Consensus 274 ~~~i~~f~~-~v~v~~~s~~~pkri~i~Gsd--G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~ 350 (599)
.+.+.+|.+ .+.|+. |+++|++|++.|+| |+.|.|++|. +||+|||++++|++++||.+|.++. .+|.+
T Consensus 56 ~~~i~~i~~~~~~v~~-S~~~P~~l~f~~~d~~g~~~~~i~K~---gDDLRqD~l~~Ql~~l~~~i~~~~~----ldl~l 127 (352)
T cd00891 56 RLEIKGLIIEKCKVMD-SKKKPLWLVFKNADPSGEPIKVIFKV---GDDLRQDMLTLQMIRLMDKIWKKEG----LDLRM 127 (352)
T ss_pred ceEEEEEeccceEEec-cccCCcEEEEEecCCCCCEEEEEecc---CCchhHHHHHHHHHHHHHHHHHHCC----CCeee
Confidence 578888886 588888 89999999999999 9999999955 6999999999999999999999874 68999
Q ss_pred ccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhh-----hhhhHhhHHHhHhHHHHHHHHhcC
Q psy15442 351 TVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG-----TLQSRGNMTLQLALACFAEYVLHL 425 (599)
Q Consensus 351 ~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~-----~~q~r~~Ft~slA~~S~~~Yilgl 425 (599)
++|.|+|+++++||||||+++.|+++|.+++....|.-.+.++..|+.+.. +.+++.+|+.|+|+||++|||+||
T Consensus 128 ~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgi 207 (352)
T cd00891 128 TPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGAFKDNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGI 207 (352)
T ss_pred EEEEEEEccCCceEEEEeCCCccHHHHHHhcCccccccccchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccc
Confidence 999999999999999999999999999988755444445556766665433 356899999999999999999999
Q ss_pred CCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCC
Q psy15442 426 TRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSN 505 (599)
Q Consensus 426 gDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~p 505 (599)
||||++||||+ .+|++ ||||||+++|... + + ..-.|
T Consensus 208 gDRH~~NILi~-~~G~~----~HIDFG~ilg~~~-------------~-----------------~---------~~~~~ 243 (352)
T cd00891 208 GDRHNDNIMLT-KTGHL----FHIDFGHFLGNFK-------------K-----------------K---------FGIKR 243 (352)
T ss_pred cccCCCceEEC-CCCCE----EEEehHHhhccCC-------------c-----------------c---------CCCCC
Confidence 99999999999 59999 9999999866410 0 0 01268
Q ss_pred CCCcccccHHHHHHhccCCCC--cccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 506 RPVPFRLTPNIMEFLTDIGVD--GPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 506 E~VPFRLT~Ni~~~lg~~gve--G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
|.||||||++|+++||+.|.+ |.|+..|+.++.+||++.+.+++++++|+.+++-+|..
T Consensus 244 E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~ 304 (352)
T cd00891 244 ERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQS 304 (352)
T ss_pred CCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCc
Confidence 999999999999999999866 99999999999999999999999999999999888763
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=8.8e-45 Score=383.95 Aligned_cols=224 Identities=21% Similarity=0.302 Sum_probs=197.8
Q ss_pred eEEEEEEec-eEEEeeccccceeEEEEEecCC---ceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCce
Q psy15442 274 SILFYRFMP-RVDIVEKHNTAARRLYIRGHNG---KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLH 349 (599)
Q Consensus 274 ~~~i~~f~~-~v~v~~~s~~~pkri~i~GsdG---~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~ 349 (599)
.+.|.++.+ ++.|+. |+++|++|++.|+|| +.|.|++|. +||+|||+|+||++++||.+|.++. ++|.
T Consensus 60 ~~~i~~i~~~~~~v~~-S~~~P~~l~f~~~dg~~~~~~~~i~K~---gDDLRqD~l~~Ql~~lm~~il~~~~----ldl~ 131 (350)
T cd00896 60 SIEITGIIPEESSVFK-SALMPLKLTFKTEKGNEEGEYPVIFKV---GDDLRQDQLVIQIISLMDRLLKKEN----LDLK 131 (350)
T ss_pred CeEEEEEecCceEEec-cccCceEEEEEeCCCCCCceEEEEecC---CcchhHhHHHHHHHHHHHHHHHhCC----CCce
Confidence 367777776 688888 899999999999999 999999954 6999999999999999999999874 7899
Q ss_pred eccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhh---------hhhhHhhHHHhHhHHHHHH
Q psy15442 350 FTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG---------TLQSRGNMTLQLALACFAE 420 (599)
Q Consensus 350 ~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~---------~~q~r~~Ft~slA~~S~~~ 420 (599)
+++|.|+|+++++||||||+ +.|+.+|.+++.. +..|+.+.. ..+++.+|+.|+|+||++|
T Consensus 132 l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~~---------l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~ 201 (350)
T cd00896 132 LTPYKVLATSPTDGLVEFIP-SVTLASILKKYGG---------ILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVIT 201 (350)
T ss_pred eEEEEEEEcCCCCcceEEEe-cccHHHHHHHHHH---------HHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999887642 222222211 1357899999999999999
Q ss_pred HHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhc
Q psy15442 421 YVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILG 500 (599)
Q Consensus 421 YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~ 500 (599)
|||||||||++||||+ .+|++ ||||||+++|.
T Consensus 202 YiLGigDRH~~NILi~-~~G~~----~HIDFG~ilg~------------------------------------------- 233 (350)
T cd00896 202 YILGVGDRHLDNLLLT-KDGKL----FHIDFGYILGR------------------------------------------- 233 (350)
T ss_pred HHhcccccCCCcEEEc-CCCCE----EEEEhHHhhCC-------------------------------------------
Confidence 9999999999999999 59999 99999988553
Q ss_pred cCCCCCCCcccccHHHHHHhccCCCCc--ccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 501 ELNSNRPVPFRLTPNIMEFLTDIGVDG--PLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 501 ~l~~pE~VPFRLT~Ni~~~lg~~gveG--~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
-+.|+.||||||++|+++||+.|.+| .|+..|+.++.+||++.+.+++++++|+.+++-+|..
T Consensus 234 -~p~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~ 298 (350)
T cd00896 234 -DPKPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIAL 298 (350)
T ss_pred -CCCCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCccccc
Confidence 13478899999999999999999999 9999999999999999999999999999999988874
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1.7e-44 Score=381.87 Aligned_cols=238 Identities=15% Similarity=0.171 Sum_probs=202.5
Q ss_pred eEEEEEEec-eEEEeeccccceeEEEEEecC--CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCcee
Q psy15442 274 SILFYRFMP-RVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHF 350 (599)
Q Consensus 274 ~~~i~~f~~-~v~v~~~s~~~pkri~i~Gsd--G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~ 350 (599)
.+.+..+.+ .+.|+. |+++|++|++.|+| |+.|.+++|. +||+|||+++||++++||++|+++. .+|.+
T Consensus 56 ~~~~~~i~~~~~~v~~-S~~~P~~l~f~~~d~~g~~~~~i~K~---gDDLRQD~l~~Qli~lm~~i~~~~~----ldL~l 127 (353)
T cd05166 56 ALDVKGIDVRECSYFN-SNALPLKISFVNADPMGENISVIFKA---GDDLRQDMLVLQMINIMDKIWLQEG----LDLRM 127 (353)
T ss_pred ceEEEeEEcCceEEec-cccCceEEEEEecCCCCCEEEEEEeC---CCcccHHHHHHHHHHHHHHHHHhCC----CCcee
Confidence 356666664 677777 99999999999999 9999999954 6999999999999999999999864 68999
Q ss_pred ccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHh-----hhhhhHhhHHHhHhHHHHHHHHhcC
Q psy15442 351 TVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRL-----GTLQSRGNMTLQLALACFAEYVLHL 425 (599)
Q Consensus 351 ~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl-----~~~q~r~~Ft~slA~~S~~~Yilgl 425 (599)
++|.|+|+++++||||||+++.|+.+|.+++.. .|.-++.++..|+.+. .+.+++.+|+.|+|+||++||||||
T Consensus 128 ~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~g~-~~~~~~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgi 206 (353)
T cd05166 128 ITFRCLSTGYDRGMVELVPDAETLRKIQVEEGL-TGSFKDRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGI 206 (353)
T ss_pred EEEEEEEcCCCcceEEEeCCchhHHHHHHHhCc-cccccchhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999876532 2333444666665443 2467899999999999999999999
Q ss_pred CCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCC
Q psy15442 426 TRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSN 505 (599)
Q Consensus 426 gDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~p 505 (599)
||||++|||++ .+|++ ||||||+++|.... .| .+ .+
T Consensus 207 gDRH~~NILl~-~~G~l----~HIDFG~~lg~~~~------------------------------~~--------~~-~~ 242 (353)
T cd05166 207 CDRHNDNIMLT-KSGHM----FHIDFGKFLGHAQM------------------------------FG--------GF-KR 242 (353)
T ss_pred cccCCCceEEC-CCCCE----EEEeeHHhcccccc------------------------------cc--------cC-CC
Confidence 99999999999 59999 99999998764210 00 11 58
Q ss_pred CCCcccccHHHHHHhccCC----CCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 506 RPVPFRLTPNIMEFLTDIG----VDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 506 E~VPFRLT~Ni~~~lg~~g----veG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
|.||||||++|+++||..| ..|.|+..|+.++.+||++.+.+++++++|+.+++-+|..
T Consensus 243 E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~ 305 (353)
T cd05166 243 DRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSK 305 (353)
T ss_pred CCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCc
Confidence 9999999999999998543 3579999999999999999999999999999999999974
No 17
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=4.8e-44 Score=378.65 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=200.0
Q ss_pred eEEEEEEece-EEEeeccccceeEEEEEecC-----CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccC
Q psy15442 274 SILFYRFMPR-VDIVEKHNTAARRLYIRGHN-----GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRF 347 (599)
Q Consensus 274 ~~~i~~f~~~-v~v~~~s~~~pkri~i~Gsd-----G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~ 347 (599)
.+++..+.++ +.|+. |+++|++|++.|+| |+.|.+++|. +||+|||++++|++++||.+|+++. .+
T Consensus 61 ~~~v~~i~~~~~~v~~-Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~---gDDLRQD~l~lQli~lm~~i~~~~~----ld 132 (366)
T cd05165 61 SLKLGELRIEKCKVMD-SKKKPLWLVFENADPTALSNENVGIIFKN---GDDLRQDMLTLQILRIMDSIWKEEG----LD 132 (366)
T ss_pred ceeEeeeecCceEEeh-hhcCCcEEEEEccCcccccCCceeEEEec---CCcccHHHHHHHHHHHHHHHHHhCC----CC
Confidence 3677777775 66666 99999999999998 6999999955 6999999999999999999999863 68
Q ss_pred ceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhh-CCCCCCcHHHHHHHhh-----hhhhHhhHHHhHhHHHHHHH
Q psy15442 348 LHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQI-KIDYELPIVRYYDRLG-----TLQSRGNMTLQLALACFAEY 421 (599)
Q Consensus 348 L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~-g~~~d~pi~~~~~kl~-----~~q~r~~Ft~slA~~S~~~Y 421 (599)
|.+++|.|+|+++++||||||+++.|+.+|..++.... +.-.+.++..|+.+-. ..+++.+|++|||+||++||
T Consensus 133 L~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtY 212 (366)
T cd05165 133 LRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNATAAFKKEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATF 212 (366)
T ss_pred ceeEEEEEEEecCCceEEEEeCCchhHHHHHHhcccccccccCcHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987753221 1112234555554332 24578999999999999999
Q ss_pred HhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhcc
Q psy15442 422 VLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGE 501 (599)
Q Consensus 422 ilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~ 501 (599)
||||||||++||||+. +|++ ||||||+++|... + .
T Consensus 213 iLGigDRH~~NILi~~-~G~l----~HIDFG~ilg~~~-------------------------------~---------~ 247 (366)
T cd05165 213 VLGIGDRHNDNIMVKE-TGQL----FHIDFGHILGNYK-------------------------------S---------K 247 (366)
T ss_pred HhhccccCCcceEEcC-CCCE----EEEehHHhhccCC-------------------------------c---------c
Confidence 9999999999999996 9999 9999999866410 0 1
Q ss_pred CC-CCCCCcccccHHHHHHhccCCCC------cccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhh
Q psy15442 502 LN-SNRPVPFRLTPNIMEFLTDIGVD------GPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQ 563 (599)
Q Consensus 502 l~-~pE~VPFRLT~Ni~~~lg~~gve------G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~ 563 (599)
+. .||.||||||++|+++||+.|.+ |.|+..|+.+..+||++.+.+.+++++++...+-++.
T Consensus 248 ~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 248 FGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred CCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 22 59999999999999999987776 8999999999999999999999999999987776665
No 18
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=1.2e-44 Score=363.60 Aligned_cols=206 Identities=33% Similarity=0.504 Sum_probs=162.0
Q ss_pred eeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhh
Q psy15442 306 IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQI 385 (599)
Q Consensus 306 ~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~ 385 (599)
.|+|++|. +||+|+|||+||+++++|.+|.++++++. +++|.|+|+++++|||||+++++||.+|++++|.+.
T Consensus 1 ~y~~l~K~---~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~ 73 (235)
T PF00454_consen 1 EYSFLVKG---GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRI 73 (235)
T ss_dssp -EEEEEEE---SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSS
T ss_pred CceEEEEC---CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccc
Confidence 48999966 69999999999999999999999987665 999999999999999999999999999999999876
Q ss_pred CCCCCCc--------------------HHHHH-HHhh----hhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCC
Q psy15442 386 KIDYELP--------------------IVRYY-DRLG----TLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCG 440 (599)
Q Consensus 386 g~~~d~p--------------------i~~~~-~kl~----~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG 440 (599)
+...+.+ +..++ +... +.++|++|+.|+|++|+++|++|+|||||+|||++..||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g 153 (235)
T PF00454_consen 74 GHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTG 153 (235)
T ss_dssp TTTCSC------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTS
T ss_pred cccccccccccccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccc
Confidence 6555432 12222 1111 235799999999999999999999999999999999999
Q ss_pred ceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHh
Q psy15442 441 LLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFL 520 (599)
Q Consensus 441 ~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~l 520 (599)
++ +|||||.+++ +..+.+||.||||||+||+++|
T Consensus 154 ~~----~hIDfg~~f~------------------------------------------~~~~~~~e~vPFrLT~~~~~~~ 187 (235)
T PF00454_consen 154 EL----IHIDFGFIFG------------------------------------------GKHLPVPETVPFRLTRNMVNAM 187 (235)
T ss_dssp EE----EE--HSSCTT------------------------------------------HHHGSSSS--SSTTHHHHHHHT
T ss_pred ee----eeEEeHHhhh------------------------------------------ccccCCCCCCCeEeCHHHHHHH
Confidence 99 9999999833 0124689999999999999999
Q ss_pred ----ccCCCCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 521 ----TDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 521 ----g~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
|+.|.+|.|+.+|++++++|+++++.+.++|++|++||+++|.+
T Consensus 188 ~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~~ 235 (235)
T PF00454_consen 188 GGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWRK 235 (235)
T ss_dssp TTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS-
T ss_pred hccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999974
No 19
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=4.4e-44 Score=370.12 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=184.7
Q ss_pred cccceeEEEEEecCCc--eeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEe
Q psy15442 290 HNTAARRLYIRGHNGK--IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVED 367 (599)
Q Consensus 290 s~~~pkri~i~GsdG~--~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~ 367 (599)
.++++|+.+..|+.+. .+.|++|. +||+|||+|+||++++||.+|.++ +++|.+++|.|+|+++++|||||
T Consensus 14 ~~~r~r~~s~~~~~~~~~~~~~i~K~---gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~ 86 (293)
T cd05168 14 KKERIRKSSPYGHLKSWDLRSVIVKT---GDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIET 86 (293)
T ss_pred HHHHhhhcCccCcCCCCCEEEEEEeC---CCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEE
Confidence 4677889999999877 89999954 699999999999999999999976 47899999999999999999999
Q ss_pred CCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHh------hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCc
Q psy15442 368 NPASLSLLDIYKTSCSQIKIDYELPIVRYYDRL------GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGL 441 (599)
Q Consensus 368 v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl------~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~ 441 (599)
|+++.|+++|.+++.. ....+..|+.+. .+.+++.+|++|+|++|++||||||||||++||||++ +|+
T Consensus 87 V~ns~tl~~i~k~~~~-----~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~-~G~ 160 (293)
T cd05168 87 IPDTVSIDSLKKKLTS-----KFKSLLDFFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDN-DGH 160 (293)
T ss_pred eCCchhHHHHHHHhcc-----CCchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcC-CCC
Confidence 9999999999887642 223455555442 2357899999999999999999999999999999997 899
Q ss_pred eeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhc
Q psy15442 442 LNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLT 521 (599)
Q Consensus 442 v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg 521 (599)
+ ||||||+++|.. | ....+|.||||||++|+++||
T Consensus 161 l----iHIDFG~~fg~~---------------~--------------------------~~~~~E~vPFrLT~~mv~~mG 195 (293)
T cd05168 161 I----IHIDFGFMLSNS---------------P--------------------------GNVGFETAPFKLTQEYIEVMG 195 (293)
T ss_pred E----EEEehHHhhccc---------------c--------------------------cCCCCCCCCEEecHHHHHHhC
Confidence 9 999999985531 1 123679999999999999999
Q ss_pred cCCCC--cccHHHHHHHHHHhcCCchhHHHHHHHHhccc
Q psy15442 522 DIGVD--GPLTASIIATARCLVQPNFQVHAILKAILRDE 558 (599)
Q Consensus 522 ~~gve--G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dp 558 (599)
+.+.+ |.|+..|+.++.+||++.+.+.+++++|+.||
T Consensus 196 g~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~ 234 (293)
T cd05168 196 GVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDS 234 (293)
T ss_pred CCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCC
Confidence 98877 89999999999999999999999999999995
No 20
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=8.3e-43 Score=367.85 Aligned_cols=239 Identities=17% Similarity=0.212 Sum_probs=202.0
Q ss_pred eEEEEEEec-eEEEeeccccceeEEEEEecC--CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCcee
Q psy15442 274 SILFYRFMP-RVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHF 350 (599)
Q Consensus 274 ~~~i~~f~~-~v~v~~~s~~~pkri~i~Gsd--G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~ 350 (599)
.+.|..+.+ ...|+. |+++|++|++.++| |+.|.+++|. +||+|||++++|++++||++|.++ ..+|.+
T Consensus 57 ~~~i~~i~~~~~~v~~-S~~~Pl~l~f~~~d~~~~~~~~IfK~---gDDLRQD~l~lQli~lmd~i~~~~----~ldl~l 128 (354)
T cd05177 57 ALRVKGIDADACSYFT-SNAAPLKISFINANPLAKNISIIFKT---GDDLRQDMLVLQIVRVMDNIWLQE----GLDMQM 128 (354)
T ss_pred CeEEEEEecCccEEeh-hhcCCCEEEEEecCCCCCeEEEEEeC---CCcccHHHHHHHHHHHHHHHHHHc----CCCceE
Confidence 377888887 567777 89999999999999 8999999965 599999999999999999999986 468999
Q ss_pred ccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhh-----hhhhHhhHHHhHhHHHHHHHHhcC
Q psy15442 351 TVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG-----TLQSRGNMTLQLALACFAEYVLHL 425 (599)
Q Consensus 351 ~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~-----~~q~r~~Ft~slA~~S~~~Yilgl 425 (599)
++|.|+|+++++||||||+++.|+++|.+++. ..|.-.+..+..|+..-+ +.+++.+|++|+|+||++||||||
T Consensus 129 ~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGi 207 (354)
T cd05177 129 IIYRCLSTGKTQGLVQMVPDAVTLAKIHRESG-LIGPLKENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGV 207 (354)
T ss_pred EEEEEEecCCCceEEEEeCChHhHHHHHHhhC-CCcccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998752 122223445666665432 346889999999999999999999
Q ss_pred CCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCC
Q psy15442 426 TRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSN 505 (599)
Q Consensus 426 gDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~p 505 (599)
||||++||||+ .+|++ ||||||+++|.... .| . -.+
T Consensus 208 gDRHn~NILi~-~~G~~----~HIDFG~ilg~~~~------------------------------~~--------~-~~~ 243 (354)
T cd05177 208 CDRHNDNIMLT-HSGHM----FHIDFGKFLGHAQT------------------------------FG--------S-IKR 243 (354)
T ss_pred cCcCCCceeEc-CCCCE----EEEehHHhcCCCcc------------------------------cc--------C-CCc
Confidence 99999999999 59999 99999998764100 00 0 158
Q ss_pred CCCcccccHHHHHHhccCCCCc----ccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhhh
Q psy15442 506 RPVPFRLTPNIMEFLTDIGVDG----PLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQKK 565 (599)
Q Consensus 506 E~VPFRLT~Ni~~~lg~~gveG----~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~~ 565 (599)
|.||||||++|+.++|..|.++ .|+..|..+..+||++.+.+++++++|+.+++-+|...
T Consensus 244 E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~ 307 (354)
T cd05177 244 DRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDI 307 (354)
T ss_pred CCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcc
Confidence 9999999999999886666553 69999999999999999999999999999999998653
No 21
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.3e-42 Score=363.38 Aligned_cols=231 Identities=16% Similarity=0.182 Sum_probs=190.1
Q ss_pred EEEEEE-eceEEEeeccccceeEEEEEecC--CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceec
Q psy15442 275 ILFYRF-MPRVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFT 351 (599)
Q Consensus 275 ~~i~~f-~~~v~v~~~s~~~pkri~i~Gsd--G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~ 351 (599)
+.+..+ ...+.|+. |+++|++|++.+.| |..|.+++|. +||+|||++++|++++||.+|+++ +.+|.++
T Consensus 61 ~~~~~~~~~~~~v~~-Sk~~Pl~l~f~~~~~~g~~~~~IfK~---gDDLRQD~l~~Qli~lmd~i~k~~----~ldL~l~ 132 (361)
T cd05174 61 IILCEVCVDQCTFMD-SKMKPLWIMYKNEEAGGGSVGIIFKN---GDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMT 132 (361)
T ss_pred eEEEEEEcCcEEEEe-ccCCceEEEEeecCCCCCEEEEEEeC---CCchhHHHHHHHHHHHHHHHHHHC----CCCeeeE
Confidence 444443 46777777 99999999999977 9999999954 699999999999999999999986 4789999
Q ss_pred cceEEecCCCceeEEeCCCCccHHHHHHHhhhh--hCCCCCCcHHHHHHHhh----hhhhHhhHHHhHhHHHHHHHHhcC
Q psy15442 352 VPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQ--IKIDYELPIVRYYDRLG----TLQSRGNMTLQLALACFAEYVLHL 425 (599)
Q Consensus 352 ~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~--~g~~~d~pi~~~~~kl~----~~q~r~~Ft~slA~~S~~~Yilgl 425 (599)
+|.|+|+++++||||||+++.|+++|..+.... .+...+.++..|+..-. ..+++.+|++|||+||++||||||
T Consensus 133 pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~~~~~A~~nF~~S~AgysVvtYiLGI 212 (361)
T cd05174 133 PYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGDALDQAIEEFTLSCAGYCVATYVLGI 212 (361)
T ss_pred EEEEEEecCCceEEEEeCCchhHHHHHHhhcccchhccccchHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998754221 11122234555554322 135789999999999999999999
Q ss_pred CCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCC
Q psy15442 426 TRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSN 505 (599)
Q Consensus 426 gDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~p 505 (599)
||||++||||+. +|++ ||||||+++|.+. ++ ....|
T Consensus 213 GDRHn~NILi~~-~G~l----~HIDFG~ilg~~~------------------------------~~---------~~~~~ 248 (361)
T cd05174 213 GDRHSDNIMIRE-SGQL----FHIDFGHFLGNFK------------------------------TK---------FGINR 248 (361)
T ss_pred cCcCccceeEcC-CCCE----EEEehHHhhcCCc------------------------------cc---------CCCCC
Confidence 999999999985 8999 9999999876420 01 11368
Q ss_pred CCCcccccHHHHHHhccCCC-----CcccHHHHHHHHHHhcCCchhHHHHHHHHhcc
Q psy15442 506 RPVPFRLTPNIMEFLTDIGV-----DGPLTASIIATARCLVQPNFQVHAILKAILRD 557 (599)
Q Consensus 506 E~VPFRLT~Ni~~~lg~~gv-----eG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~D 557 (599)
|.||||||++|+++||..|. .|.|+..|+.+..+||++.+.+.+++++++..
T Consensus 249 E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~s 305 (361)
T cd05174 249 ERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAA 305 (361)
T ss_pred CCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99999999999999974322 25999999999999999999999999999854
No 22
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=6e-42 Score=361.86 Aligned_cols=230 Identities=14% Similarity=0.196 Sum_probs=195.1
Q ss_pred EEEEEEec-eEEEeeccccceeEEEEEecCC-----ceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCc
Q psy15442 275 ILFYRFMP-RVDIVEKHNTAARRLYIRGHNG-----KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFL 348 (599)
Q Consensus 275 ~~i~~f~~-~v~v~~~s~~~pkri~i~GsdG-----~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L 348 (599)
+.+.++.+ .+.|+. |+++|.+|++.+.|| ..|.+++|. +||+|||++++|++++||++|.++ +++|
T Consensus 63 ~~~~~i~~~~~~v~~-S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~---GDDLRQD~l~lQli~lmd~i~~~~----~ldL 134 (365)
T cd00894 63 LRAGALVIEKCKVMA-SKKKPLWLEFKCADPTALSNETIGIIFKH---GDDLRQDMLILQILRIMESIWETE----SLDL 134 (365)
T ss_pred eEEEEEEcCceEEEc-ccCCceEEEEECCCCCccCCCceeEEEeC---CCcccHHHHHHHHHHHHHHHHHHc----CCCe
Confidence 55666655 555566 999999999999987 478899965 699999999999999999999875 4799
Q ss_pred eeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhh-----hhhhHhhHHHhHhHHHHHHHHh
Q psy15442 349 HFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG-----TLQSRGNMTLQLALACFAEYVL 423 (599)
Q Consensus 349 ~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~-----~~q~r~~Ft~slA~~S~~~Yil 423 (599)
.+++|.|+|+++++||||||+++.|+++|.++.....|..++.++..|+.+-. ..+++.+|++|||+||++||||
T Consensus 135 ~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiL 214 (365)
T cd00894 135 CLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVL 214 (365)
T ss_pred EEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccccccchhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 99999999999999999999999999999887544444445556776665432 2468999999999999999999
Q ss_pred cCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccC-
Q psy15442 424 HLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGEL- 502 (599)
Q Consensus 424 glgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l- 502 (599)
||||||++||||+. +|++ ||||||+++|...+ .+
T Consensus 215 GIgDRHndNImi~~-~G~l----fHIDFG~ilg~~~~----------------------------------------~~g 249 (365)
T cd00894 215 GIGDRHNDNIMITE-TGNL----FHIDFGHILGNYKS----------------------------------------FLG 249 (365)
T ss_pred cccCccccceeEcC-CCCE----EEEeeHHhhCCCCc----------------------------------------cCC
Confidence 99999999999994 8999 99999998775210 01
Q ss_pred CCCCCCcccccHHHHHHhccCCCC-----cccHHHHHHHHHHhcCCchhHHHHHHHHhcc
Q psy15442 503 NSNRPVPFRLTPNIMEFLTDIGVD-----GPLTASIIATARCLVQPNFQVHAILKAILRD 557 (599)
Q Consensus 503 ~~pE~VPFRLT~Ni~~~lg~~gve-----G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~D 557 (599)
-.||.||||||++|+++||+.|.+ +.|+..|+.+..+||++.+.+.+++++++..
T Consensus 250 i~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~s 309 (365)
T cd00894 250 INKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMT 309 (365)
T ss_pred CCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 258999999999999999988765 3699999999999999999999999999864
No 23
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=1e-41 Score=360.53 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=197.5
Q ss_pred eEEEEEEece-EEEeeccccceeEEEEEec--CCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCcee
Q psy15442 274 SILFYRFMPR-VDIVEKHNTAARRLYIRGH--NGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHF 350 (599)
Q Consensus 274 ~~~i~~f~~~-v~v~~~s~~~pkri~i~Gs--dG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~ 350 (599)
.+.+..+.++ ..|+. |+++|++|++.+. +|..|.+++|. +||+|||++++|++++||++|+++ +.+|.+
T Consensus 60 ~~~v~~i~~~~~~v~~-S~~~Pl~l~f~~~~~~g~~~~~IfK~---gDDLRQD~l~lQli~lm~~i~k~~----~ldL~l 131 (362)
T cd05173 60 SIILSELNVEKCKYMD-SKMKPLWIVYNNKLFGGDSLGIIFKN---GDDLRQDMLTLQILRLMDTLWKEA----GLDLRI 131 (362)
T ss_pred ceEEEEEEcCceEEec-ccCCCeEEEEeecCCCCCEEEEEEeC---CCchhHHHHHHHHHHHHHHHHHHC----CCCeee
Confidence 3677777776 66666 9999999999875 79999999965 699999999999999999999986 478999
Q ss_pred ccceEEecCCCceeEEeCCCCccHHHHHHHhhhh--hCCCCCCcHHHHHHHhhh----hhhHhhHHHhHhHHHHHHHHhc
Q psy15442 351 TVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQ--IKIDYELPIVRYYDRLGT----LQSRGNMTLQLALACFAEYVLH 424 (599)
Q Consensus 351 ~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~--~g~~~d~pi~~~~~kl~~----~q~r~~Ft~slA~~S~~~Yilg 424 (599)
++|.|+|+++++||||||+++.|+.+|..+.... .+......+..|+.+-+. .+++.+|++|||+||++|||||
T Consensus 132 ~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~~~~~a~~nF~~S~AgYsvvtYILG 211 (362)
T cd05173 132 VPYGCLATGDRSGLIEVVSSAETIADIQLNSSNVAAAAAFNKDALLNWLKEYNSGDDLERAIEEFTLSCAGYCVATYVLG 211 (362)
T ss_pred EEEEEEEccCCceEEEEeCCchhHHHHHHhccccchhcccChhHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998654221 111122345555543321 3478999999999999999999
Q ss_pred CCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCC
Q psy15442 425 LTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNS 504 (599)
Q Consensus 425 lgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~ 504 (599)
|||||++||||+ .+|++ ||||||+++|.+. ++ ....
T Consensus 212 IGDRHn~NILi~-~~G~l----~HIDFG~ilg~~~------------------------------~~---------~~~~ 247 (362)
T cd05173 212 IGDRHSDNIMVR-KNGQL----FHIDFGHILGNFK------------------------------SK---------FGIK 247 (362)
T ss_pred ccccCCCceEEC-CCCCE----EEEehHHhhccCC------------------------------cc---------cCCC
Confidence 999999999998 59999 9999999866410 01 1246
Q ss_pred CCCCcccccHHHHHHhc--cCC---CCcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhh
Q psy15442 505 NRPVPFRLTPNIMEFLT--DIG---VDGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQK 564 (599)
Q Consensus 505 pE~VPFRLT~Ni~~~lg--~~g---veG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~ 564 (599)
||.||||||++|+++|| ..| .+|.|+..|+.++.+||++.+.+.+++++++...+-++..
T Consensus 248 ~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~ 312 (362)
T cd05173 248 RERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTS 312 (362)
T ss_pred CCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccc
Confidence 89999999999999995 233 4789999999999999999999999999999888777654
No 24
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=4.1e-42 Score=354.86 Aligned_cols=211 Identities=17% Similarity=0.156 Sum_probs=180.1
Q ss_pred ceeEEEEEecCC--ceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCC
Q psy15442 293 AARRLYIRGHNG--KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPA 370 (599)
Q Consensus 293 ~pkri~i~GsdG--~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~ 370 (599)
+|-.+.+--.|| ..+.|++|. +||+|||+++||++++||++|+++ +++|.+++|.|+|+++++||||||++
T Consensus 17 ~P~~~~~~~~~~~~~~~~~i~K~---gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~GlIE~V~n 89 (289)
T cd00893 17 IPYLELKKLTDSTLINSEFIVKC---GDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGGIIEFIPN 89 (289)
T ss_pred CchhhccCccCCCCeeEEEEEEC---CCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCceeEEEeCC
Confidence 455555544555 589999955 699999999999999999999876 47999999999999999999999999
Q ss_pred CccHHHHHHHhhhhhCCCCCCcHHHHHHH-h------hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCcee
Q psy15442 371 SLSLLDIYKTSCSQIKIDYELPIVRYYDR-L------GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLN 443 (599)
Q Consensus 371 ~~tL~~i~~~~~~~~g~~~d~pi~~~~~k-l------~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~ 443 (599)
++|+++|.+++ ..++..++.+ . .+.+++.+|++|+|+||++||||||||||++||||+. +|++
T Consensus 90 s~tl~~i~~~~--------~~~l~~~~~~~~~~~~~~~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~l- 159 (289)
T cd00893 90 SISIHEIKKQQ--------INSLYDYFLELYGSYTTEAFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHI- 159 (289)
T ss_pred chhHHHHHHhc--------cccHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCE-
Confidence 99999998865 1244444432 2 2457899999999999999999999999999999996 8999
Q ss_pred eeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccC
Q psy15442 444 VSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDI 523 (599)
Q Consensus 444 ~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~ 523 (599)
||||||+++|.. | + +. ..+|.||||||++|+++||+.
T Consensus 160 ---iHIDFG~ilg~~---------------p---------------~---------~~-~~~E~~PFrLT~emv~~mGg~ 196 (289)
T cd00893 160 ---IHIDFGFILDSS---------------P---------------G---------NN-LGFEPAAFKFTKEMVDFMGGK 196 (289)
T ss_pred ---EEEehHHhhCcC---------------C---------------c---------CC-CCCCCCCeeecHHHHHHhCCC
Confidence 999999986531 1 1 11 247999999999999999998
Q ss_pred CCC--cccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhh
Q psy15442 524 GVD--GPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQ 563 (599)
Q Consensus 524 gve--G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~ 563 (599)
|.+ |.|+..|+.++.+||++.+.+++++++|+.+++-+|.
T Consensus 197 ~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 197 KSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred CChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 877 7899999999999999999999999999999999887
No 25
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.2e-40 Score=350.18 Aligned_cols=235 Identities=15% Similarity=0.201 Sum_probs=193.2
Q ss_pred EEEEEEece-EEEeeccccceeEEEEEecC--CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceec
Q psy15442 275 ILFYRFMPR-VDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFT 351 (599)
Q Consensus 275 ~~i~~f~~~-v~v~~~s~~~pkri~i~Gsd--G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~ 351 (599)
+.+..+.++ ..|+. |+++|++|++.++| |+.|.+++|. +||+|||++++|++++||++|.++ +.+|.+.
T Consensus 57 ~~~~~~~~~~c~v~~-S~~~Pl~l~f~~~d~~g~~~~~ifK~---gDDLRQD~l~lQli~lmd~i~~~~----~ldL~l~ 128 (353)
T cd05176 57 LVAKELNIKVCSFFS-SNAVPLKIALVNADPLGEEINVMFKV---GEDLRQDMLALQMIKIMDKIWLQE----GLDLRMV 128 (353)
T ss_pred eeEccEehheeEEec-ccCCceEEEEEccCCCCCEEEEEEeC---CCCccHHHHHHHHHHHHHHHHHHC----CCCeEEE
Confidence 444555554 44455 99999999999999 9999999965 599999999999999999999976 4689999
Q ss_pred cceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhh-----hhhhHhhHHHhHhHHHHHHHHhcCC
Q psy15442 352 VPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG-----TLQSRGNMTLQLALACFAEYVLHLT 426 (599)
Q Consensus 352 ~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~-----~~q~r~~Ft~slA~~S~~~Yilglg 426 (599)
+|.|+|+++++|+||||+++.|+.+|..++. ..|.-.+.++..|..+.+ +.+++.+|++|+|+||++|||||||
T Consensus 129 pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIg 207 (353)
T cd05176 129 IFKCLSTGKDRGMVELVPASETLRKIQVEYG-VTGSFKDKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGIC 207 (353)
T ss_pred EEEEEEcCCCceEEEEeCCcHhHHHHHHHhC-cCCccccchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999987653 223334556776766544 2468999999999999999999999
Q ss_pred CCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCC
Q psy15442 427 RLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNR 506 (599)
Q Consensus 427 DRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE 506 (599)
|||++||||+ .+|++ ||||||+++|.... | | -..+|
T Consensus 208 DRHn~NILi~-~~Ghl----~HIDFG~ilg~~~~----~--------------------------g---------~~~~e 243 (353)
T cd05176 208 DRHNDNIMLR-STGHM----FHIDFGKFLGHAQM----F--------------------------G---------SFKRD 243 (353)
T ss_pred CcCCcceEEc-CCCCE----EEEeeHHhcCCCcc----c--------------------------c---------CCCCC
Confidence 9999999998 58999 99999998774100 0 0 02589
Q ss_pred CCcccccHHHHHHhccCCCC----cccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhh
Q psy15442 507 PVPFRLTPNIMEFLTDIGVD----GPLTASIIATARCLVQPNFQVHAILKAILRDEMIAI 562 (599)
Q Consensus 507 ~VPFRLT~Ni~~~lg~~gve----G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W 562 (599)
.||||||++|+++||+...+ ..|+..|..+..+||++.+.+++++++++.-.+-+.
T Consensus 244 ~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 244 RAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred CCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCccc
Confidence 99999999999999743321 258999999999999999999999999987554443
No 26
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=3.2e-39 Score=335.94 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=185.5
Q ss_pred EEEEEEece-EEEeeccc-cceeEEEEEecCCce-------------eceEeecCCCCccchhhHHHHHHHHHHHHHHhc
Q psy15442 275 ILFYRFMPR-VDIVEKHN-TAARRLYIRGHNGKI-------------YPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAK 339 (599)
Q Consensus 275 ~~i~~f~~~-v~v~~~s~-~~pkri~i~GsdG~~-------------y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~ 339 (599)
..+..+.++ ..++. |+ ..|-.+++...|+.. +..++|. +||+|||++++|++++||++|++
T Consensus 8 ~~v~~i~~~~~~~~~-S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~---gDDLRQD~l~~Qli~lm~~i~~~ 83 (311)
T cd05167 8 YVIVGIDYKSGTPLQ-SHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKV---GDDCRQDMLALQLISLFKNIFQS 83 (311)
T ss_pred eEEEEEEccccEEec-cCCCCceEEEEEecCCCccccccccccccceEEEEEeC---CCCccHHHHHHHHHHHHHHHHHH
Confidence 445555554 44555 66 679999999988753 8888855 69999999999999999999997
Q ss_pred CccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHh-------hhhhhHhhHHHh
Q psy15442 340 QKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRL-------GTLQSRGNMTLQ 412 (599)
Q Consensus 340 ~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl-------~~~q~r~~Ft~s 412 (599)
. +++|.+++|.|+|+++++||||||+++.|+++|.+.. +..+..|+.+. .+.+++.+|++|
T Consensus 84 ~----~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~--------~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S 151 (311)
T cd05167 84 A----GLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTT--------DNGLYEYFTSKYGDESSLAFQKARENFIRS 151 (311)
T ss_pred C----CCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhc--------ccHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 5 5789999999999999999999999999999986532 22454444322 235689999999
Q ss_pred HhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCc
Q psy15442 413 LALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAG 492 (599)
Q Consensus 413 lA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g 492 (599)
+|+||++||||||||||++||||+. +|++ ||||||+++|. .|
T Consensus 152 ~Agysv~tYiLgigDRHn~NILid~-~G~l----~HIDFG~il~~---------------~p------------------ 193 (311)
T cd05167 152 MAAYSLISYLLQIKDRHNGNIMIDD-DGHI----IHIDFGFIFEI---------------SP------------------ 193 (311)
T ss_pred HHHHHHHHHHhhccccCccceEEcC-CCCE----EEEeeHHhhcc---------------CC------------------
Confidence 9999999999999999999999997 8999 99999988553 01
Q ss_pred hhhhhhhccCCCCCCCcccccHHHHHHhccCCCCc---ccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhh
Q psy15442 493 VIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDG---PLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQ 563 (599)
Q Consensus 493 ~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG---~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~ 563 (599)
|+.+ .+|.||||||++|+++||+.+..| .|+..|..+..+||++.+.+.+++++|+...+-++.
T Consensus 194 ------~~~~-~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~ 260 (311)
T cd05167 194 ------GGNL-KFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR 260 (311)
T ss_pred ------CCCC-CcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh
Confidence 1122 479999999999999999988666 566677777778999999999999999976664443
No 27
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=6e-38 Score=329.94 Aligned_cols=231 Identities=17% Similarity=0.217 Sum_probs=194.9
Q ss_pred EEEEEEeceEEEeeccccceeEEEEEecC--CceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceecc
Q psy15442 275 ILFYRFMPRVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTV 352 (599)
Q Consensus 275 ~~i~~f~~~v~v~~~s~~~pkri~i~Gsd--G~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~ 352 (599)
+.+..+.++--.+..|+.+|.+|++.+.| |..|..++|. +||+|||+.++|++++||++|+++. .+|.+.+
T Consensus 58 ~~v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~---GDDLRQD~l~lQli~lmd~i~~~~~----ldl~l~p 130 (354)
T cd00895 58 LLVKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKC---GDDLRQDMLTLQMIRIMNKIWVQEG----LDMRMVI 130 (354)
T ss_pred eEEEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeC---CCCccHHHHHHHHHHHHHHHHHHcC----CCceEEE
Confidence 56667666444444499999999999999 8999999976 5999999999999999999999874 6899999
Q ss_pred ceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhh-----hhhhHhhHHHhHhHHHHHHHHhcCCC
Q psy15442 353 PRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG-----TLQSRGNMTLQLALACFAEYVLHLTR 427 (599)
Q Consensus 353 y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~-----~~q~r~~Ft~slA~~S~~~YilglgD 427 (599)
|.|+|+++++|+||||+++.|+.+|..++ ...|.-.+.++..|+.+.+ ..+++.+|++|||+||+++|+|||||
T Consensus 131 Y~vl~tg~~~G~IE~V~ns~tl~~I~~~~-g~~g~~~~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgD 209 (354)
T cd00895 131 FRCFSTGRGRGMVEMIPNAETLRKIQVEH-GVTGSFKDRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICD 209 (354)
T ss_pred EEEEecCCCceEEEEeCChhhHHHHHHHh-CcCcccccchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999999998764 2234455667888876653 24579999999999999999999999
Q ss_pred CCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCC
Q psy15442 428 LNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRP 507 (599)
Q Consensus 428 Rhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~ 507 (599)
||++||||+ .+|++ ||||||+++|...+ | | . ..+|+
T Consensus 210 RHndNImi~-~~Ghl----fHIDFG~iLg~~~~----~--------------------------g--------~-~~re~ 245 (354)
T cd00895 210 RHNDNIMLK-TTGHM----FHIDFGRFLGHAQM----F--------------------------G--------N-IKRDR 245 (354)
T ss_pred cCCCceeEc-CCCCE----EEEeeHHhcCCCcc----c--------------------------C--------C-CCcCC
Confidence 999999999 49999 99999998775211 0 1 1 25799
Q ss_pred CcccccHHHHHHhccCCCCc----ccHHHHHHHHHHhcCCchhHHHHHHHHhcc
Q psy15442 508 VPFRLTPNIMEFLTDIGVDG----PLTASIIATARCLVQPNFQVHAILKAILRD 557 (599)
Q Consensus 508 VPFRLT~Ni~~~lg~~gveG----~F~~~~~~~~~~L~~~~~~l~~~L~~fl~D 557 (599)
+||+||++|+.+||..|.++ .|...|..+..+||++.+.+.+++++++.-
T Consensus 246 ~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~s 299 (354)
T cd00895 246 APFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSC 299 (354)
T ss_pred CCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 99999999999997544332 599999999999999999999999999854
No 28
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=4e-38 Score=331.76 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=188.5
Q ss_pred EEEEEEeceEEEeeccccceeEEEEEecCCc------eeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCc
Q psy15442 275 ILFYRFMPRVDIVEKHNTAARRLYIRGHNGK------IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFL 348 (599)
Q Consensus 275 ~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~------~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L 348 (599)
+.+..+.++--.+..|+.+|.+|++.+.||. .|..++|. +||+|||++++|++++||++|.++ +.+|
T Consensus 61 ~~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~---GDDLRQD~l~lQli~lmd~i~~~~----~ldL 133 (366)
T cd05175 61 HQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKN---GDDLRQDMLTLQIIRIMENIWQNQ----GLDL 133 (366)
T ss_pred eEEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeC---CCCccHHHHHHHHHHHHHHHHHHC----CCCe
Confidence 6677777744444459999999999999994 58899965 599999999999999999999986 4789
Q ss_pred eeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCC--CCCCcHHHHHHHhh----hhhhHhhHHHhHhHHHHHHHH
Q psy15442 349 HFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKI--DYELPIVRYYDRLG----TLQSRGNMTLQLALACFAEYV 422 (599)
Q Consensus 349 ~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~--~~d~pi~~~~~kl~----~~q~r~~Ft~slA~~S~~~Yi 422 (599)
.+++|.|+|+++++|+||||+++.|+++|..+.- ..|. ..+.++..|+.+-. ..+++.+|++|||+||++|||
T Consensus 134 ~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~a~~nF~~S~AgYsV~tYi 212 (366)
T cd05175 134 RMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGG-LKGALQFNSHTLHQWLKDKNKGEMYDAAIDLFTRSCAGYCVATFI 212 (366)
T ss_pred EEEEEEEEEecCCceEEEEcCCchhHHHHHhccc-cccccccCchhHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976531 1111 12235555654422 246899999999999999999
Q ss_pred hcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccC
Q psy15442 423 LHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGEL 502 (599)
Q Consensus 423 lglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l 502 (599)
|||||||++||||+. +|++ ||||||+++|.. | ++ .-
T Consensus 213 LGIgDRHndNImi~~-~G~l----~HIDFG~iLg~~---------------p---------------~~---------~~ 248 (366)
T cd05175 213 LGIGDRHNSNIMVKD-DGQL----FHIDFGHFLDHK---------------K---------------KK---------FG 248 (366)
T ss_pred hcccccCccceeEcC-CCCE----EEEehHHhhcCC---------------C---------------cc---------CC
Confidence 999999999999995 9999 999999987741 1 00 01
Q ss_pred CCCCCCcccccHHHHHHhccCC-----CC--cccHHHHHHHHHHhcCCchhHHHHHHHHhc
Q psy15442 503 NSNRPVPFRLTPNIMEFLTDIG-----VD--GPLTASIIATARCLVQPNFQVHAILKAILR 556 (599)
Q Consensus 503 ~~pE~VPFRLT~Ni~~~lg~~g-----ve--G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~ 556 (599)
..||.||||||++|+..||..+ .+ +.|+..|..+..+||++.+.+.+++++++.
T Consensus 249 ~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~ 309 (366)
T cd05175 249 YKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLG 309 (366)
T ss_pred CCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999997432 22 489999999999999999999999999875
No 29
>KOG0891|consensus
Probab=100.00 E-value=6.7e-37 Score=374.85 Aligned_cols=247 Identities=29% Similarity=0.437 Sum_probs=218.9
Q ss_pred cceEEEEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceec
Q psy15442 272 VYSILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFT 351 (599)
Q Consensus 272 ~~~~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~ 351 (599)
..++.|..|.+.+.++. ++++||++.++|+||+.|.|++ ||++|.|+|+|+||+|.++|.++..+.+|.+|+|.+.
T Consensus 1954 ~~~i~i~~f~~~~~vit-skqRprkl~i~gs~g~d~~~~l---kghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq 2029 (2341)
T KOG0891|consen 1954 KPIIRIQSFEPKFNVIT-SKQRPRKLVIRGSDGKDYQYLL---KGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQ 2029 (2341)
T ss_pred ceEEehhhccHHHHHHH-HHhhhHHHhhcccchhhHHHHh---hchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 45799999999999999 9999999999999999999999 6689999999999999999999999999999999999
Q ss_pred cceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCc-------------HHH-----HHHH-hh-----------
Q psy15442 352 VPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELP-------------IVR-----YYDR-LG----------- 401 (599)
Q Consensus 352 ~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~p-------------i~~-----~~~k-l~----------- 401 (599)
.|.++|++++.||++|++++.|++.++.++.....+....+ +.. -+++ +.
T Consensus 2030 ~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~l 2109 (2341)
T KOG0891|consen 2030 RYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVL 2109 (2341)
T ss_pred HhhhcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHH
Confidence 99999999999999999999999999999887554322111 000 0010 00
Q ss_pred ---------hhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchh
Q psy15442 402 ---------TLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSA 472 (599)
Q Consensus 402 ---------~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~ 472 (599)
+...|.+||+|.|++|+++|++|+|||||+|.|+++.||.+ +|||||+| ||.
T Consensus 2110 wlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkv----ihidfgdc----------fev----- 2170 (2341)
T KOG0891|consen 2110 WLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKV----IHIDFGDC----------FEV----- 2170 (2341)
T ss_pred HHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccce----EEechHHH----------HHH-----
Confidence 12357899999999999999999999999999999999999 99999999 553
Q ss_pred HHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCcccHHHHHHHHHHhcCCchhHHHHHH
Q psy15442 473 KEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILK 552 (599)
Q Consensus 473 ~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG~F~~~~~~~~~~L~~~~~~l~~~L~ 552 (599)
++.| ..+||.+|||||++++++|...|.+|.|+.+|+.+++++|.+++.++++++
T Consensus 2171 -A~~r------------------------ek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~a~le 2225 (2341)
T KOG0891|consen 2171 -AMLR------------------------EKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLMAVLE 2225 (2341)
T ss_pred -HHhh------------------------ccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 4333 247999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhhhhhc
Q psy15442 553 AILRDEMIAIQKKV 566 (599)
Q Consensus 553 ~fl~Dpl~~W~~~~ 566 (599)
+|++||++.|....
T Consensus 2226 afvydplinwr~~~ 2239 (2341)
T KOG0891|consen 2226 AFVYDPLINWRLDD 2239 (2341)
T ss_pred hhhcccchhhhccc
Confidence 99999999998773
No 30
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=99.97 E-value=6.3e-31 Score=268.14 Aligned_cols=159 Identities=37% Similarity=0.557 Sum_probs=133.7
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
+||+|+|+|+.+++++||||+|+|+||+.|.||||.+. ++|+|+||||||||+++|++|.+++||++| +|+ ..++
T Consensus 2 ~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~-~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 2 ERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPA-ARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred cccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCC-chhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 49999999999999999999999999999999999754 599999999999999999999999999998 554 5566
Q ss_pred c-ccc------CCCCC---hhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccc
Q psy15442 168 L-LYC------LGSPA---SSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHF 231 (599)
Q Consensus 168 L-~~c------~~~~~---~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigd 231 (599)
| +.| .+... .-..|+|+|++++++.+|+++|++|+++.++++++||.+|++|+.++ |||+|+||
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~~~r~~ft~s~A~~s~~gYilglgd 160 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYWLFRKQFTYQLALLSFMTYILSINN 160 (253)
T ss_pred cCCccceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 222 22111 11238999999999999999999999999999999999999998555 89999999
Q ss_pred cCccceeeecCCCCCCCccccc
Q psy15442 232 RVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 232 R~P~ki~F~vsps~gsv~~tDl 253 (599)
|||+++++ +..+|.+..+|+
T Consensus 161 Rh~~nili--~~~tG~v~hiDf 180 (253)
T cd05163 161 RNPDKIFI--SRDTGNVYQSDL 180 (253)
T ss_pred CCchhEEE--EcCCCcEEEEee
Confidence 99999874 445555444443
No 31
>KOG0905|consensus
Probab=99.96 E-value=4.7e-30 Score=290.26 Aligned_cols=187 Identities=18% Similarity=0.222 Sum_probs=164.5
Q ss_pred EEeeccccceeEEEEEe--cCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCc
Q psy15442 285 DIVEKHNTAARRLYIRG--HNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQL 362 (599)
Q Consensus 285 ~v~~~s~~~pkri~i~G--sdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~ 362 (599)
.... |+..|-+|+|+| -+|..++-+.|+ +||+|||+.++|++++||+||.++. .+|.+-+|.++|.+-+-
T Consensus 1062 SyFn-SNA~PLKitFvnadp~geni~iIfK~---gDDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~r 1133 (1639)
T KOG0905|consen 1062 SYFN-SNALPLKITFVNADPLGENISIIFKC---GDDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDR 1133 (1639)
T ss_pred cccc-CCCcceEEEEecCCCccccceeeeec---CchHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccc
Confidence 3344 899999999999 899999999987 4999999999999999999999975 68999999999999999
Q ss_pred eeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhhh-----hhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEc
Q psy15442 363 RLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGT-----LQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHR 437 (599)
Q Consensus 363 gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~-----~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~ 437 (599)
||+|-|+++.||.+|..+ ++-.|.-+|.|+..|+.|-+. ..|.+||+.|||+||+++|||||+|||+||||+.+
T Consensus 1134 gMvElVp~a~TLrKIQve-~GltGsfkD~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~ 1212 (1639)
T KOG0905|consen 1134 GMVELVPNAETLRKIQVE-EGLTGSFKDRPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTK 1212 (1639)
T ss_pred cceeecccHHHHHHHHHH-hccccccccchHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEec
Confidence 999999999999999887 566788899999999988765 23688999999999999999999999999999975
Q ss_pred CCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccC
Q psy15442 438 DCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVD 489 (599)
Q Consensus 438 ~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d 489 (599)
||++ ||||||-++|. ++||..++++.+|+..+++|.|++||+|
T Consensus 1213 -sGHm----FHIDFGKFLGh----aQMfg~fKRDRaPFVfTSdMayvINgG~ 1255 (1639)
T KOG0905|consen 1213 -SGHM----FHIDFGKFLGH----AQMFGGFKRDRAPFVFTSDMAYVINGGD 1255 (1639)
T ss_pred -cCcE----EEEehhhhcch----HHHhcccccccCCeEEeccchhhhcCCC
Confidence 8999 99999999997 4889877666666666666666666544
No 32
>KOG0906|consensus
Probab=99.95 E-value=1.1e-27 Score=259.84 Aligned_cols=220 Identities=20% Similarity=0.273 Sum_probs=189.5
Q ss_pred eEEEEEEeceEEEeeccccceeEEEEEecCCc-eeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceecc
Q psy15442 274 SILFYRFMPRVDIVEKHNTAARRLYIRGHNGK-IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTV 352 (599)
Q Consensus 274 ~~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~-~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~ 352 (599)
.+.|..+.|.-.-+..|-..|-+|+|...+|. .|+-+.|. +||+|||+.+.|+.++|+.+|.++. .+|.+++
T Consensus 554 ~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~---GDDLrQDqlV~Qii~lMd~LLkken----lDLkLtp 626 (843)
T KOG0906|consen 554 DVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKK---GDDLRQDQLVLQIIRLMDRLLKKEN----LDLKLTP 626 (843)
T ss_pred CceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEec---CcchhHHHHHHHHHHHHHHHhcccc----cccccee
Confidence 48888888877777779999999999999999 99999976 4999999999999999999999975 6899999
Q ss_pred ceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhhh---------hhhHhhHHHhHhHHHHHHHHh
Q psy15442 353 PRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGT---------LQSRGNMTLQLALACFAEYVL 423 (599)
Q Consensus 353 y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~---------~q~r~~Ft~slA~~S~~~Yil 423 (599)
|.|+|++++-|.+|.++ +.+|.+|..++.. |..|.++... ...+++|.+|||+||+++||+
T Consensus 627 YkVLatg~~eG~vefI~-s~~la~Ils~~~~---------I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYIL 696 (843)
T KOG0906|consen 627 YKVLATGPKEGFVEFIP-SKPLARILSEYHS---------ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYIL 696 (843)
T ss_pred eEEeccCCCcccEEeec-CCcHHHHHHHHHH---------HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeee
Confidence 99999999999999999 4899999888753 3333333322 234789999999999999999
Q ss_pred cCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCC
Q psy15442 424 HLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELN 503 (599)
Q Consensus 424 glgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~ 503 (599)
|+||||++|+|+.+ +|++ ||||||+.+|. | +
T Consensus 697 GvGDRhldNLllT~-dGk~----FHiDFgyIlGR-------------------------------D-------------P 727 (843)
T KOG0906|consen 697 GVGDRHLDNLLLTK-DGKL----FHIDFGYILGR-------------------------------D-------------P 727 (843)
T ss_pred cccCCCcCceEEcc-CCcE----EEEeeeeeccC-------------------------------C-------------C
Confidence 99999999999997 7999 99999998774 1 3
Q ss_pred CCCCCcccccHHHHHHhccCCCC--cccHHHHHHHHHHhcCCchhHHHHHHHHhccch
Q psy15442 504 SNRPVPFRLTPNIMEFLTDIGVD--GPLTASIIATARCLVQPNFQVHAILKAILRDEM 559 (599)
Q Consensus 504 ~pE~VPFRLT~Ni~~~lg~~gve--G~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl 559 (599)
.|-+-|..|++.|+++||....+ --|++.|..+...||++...|+++.+++...-+
T Consensus 728 KP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~I 785 (843)
T KOG0906|consen 728 KPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANI 785 (843)
T ss_pred CCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC
Confidence 46667999999999999965542 379999999999999999999999999876655
No 33
>KOG0904|consensus
Probab=99.94 E-value=2.3e-27 Score=263.77 Aligned_cols=229 Identities=18% Similarity=0.254 Sum_probs=179.3
Q ss_pred eEEEeeccccceeEEEEE----ecCCceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEec
Q psy15442 283 RVDIVEKHNTAARRLYIR----GHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPV 358 (599)
Q Consensus 283 ~v~v~~~s~~~pkri~i~----GsdG~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPL 358 (599)
...|+. |+.+|-=+.+- |+++ .-..++|. +||+|||+.+.|++++|+.||+.+. .+|.+.+|.|+|+
T Consensus 783 kckvM~-SkkrPLwl~~~Np~~~s~~-~v~iIFKN---GDDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~ 853 (1076)
T KOG0904|consen 783 KCKVMD-SKKRPLWLVFENPDAGSNL-SVGIIFKN---GDDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLST 853 (1076)
T ss_pred hhhhhh-ccCCceEEEecCCCcccCC-ceeEEEcC---CchHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccc
Confidence 344566 78888777763 3333 34556644 6999999999999999999999864 6899999999999
Q ss_pred CCCceeEEeCCCCccHHHHHHHhhhh--h-CCCCCCcHHHHHHHhhh----h-hhHhhHHHhHhHHHHHHHHhcCCCCCC
Q psy15442 359 SAQLRLVEDNPASLSLLDIYKTSCSQ--I-KIDYELPIVRYYDRLGT----L-QSRGNMTLQLALACFAEYVLHLTRLNP 430 (599)
Q Consensus 359 s~~~gLIE~v~~~~tL~~i~~~~~~~--~-g~~~d~pi~~~~~kl~~----~-q~r~~Ft~slA~~S~~~YilglgDRhp 430 (599)
+..+||||-|.++.|+.+|..+-... . .++++ .+..|...-++ + .|-..||.|||+||+++||+||||||.
T Consensus 854 Gd~iGlIEVV~~s~TIa~IQ~~~g~~~at~afn~~-~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHs 932 (1076)
T KOG0904|consen 854 GDRIGLIEVVRNSETIANIQLNTGNMAATAAFNKD-ALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHS 932 (1076)
T ss_pred cceeeeEEEecCchhhhhhhhccccceeeccCCHH-HHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeeccccccc
Confidence 99999999999999999997763221 1 12222 24444322121 1 256899999999999999999999999
Q ss_pred CceeEEcCCCceeeeeeeeeccCccccccccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcc
Q psy15442 431 DMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPF 510 (599)
Q Consensus 431 ~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPF 510 (599)
||||+.. ||++ ||||||+++|.+++ .| | -..|.|||
T Consensus 933 DNIMvke-~Gql----FHIDFGHiLGh~Ks---Kl--------------------------G----------i~RERvPF 968 (1076)
T KOG0904|consen 933 DNIMVKE-TGQL----FHIDFGHILGHFKS---KL--------------------------G----------INRERVPF 968 (1076)
T ss_pred CceEEec-cCcE----EEEEhhhhhccchh---hc--------------------------C----------cccccCce
Confidence 9999986 8999 99999999998532 11 1 25799999
Q ss_pred cccHHHHHHhccCCC------CcccHHHHHHHHHHhcCCchhHHHHHHHHhccchhhhhhh
Q psy15442 511 RLTPNIMEFLTDIGV------DGPLTASIIATARCLVQPNFQVHAILKAILRDEMIAIQKK 565 (599)
Q Consensus 511 RLT~Ni~~~lg~~gv------eG~F~~~~~~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~~ 565 (599)
-||++++.+|+..+. -+.|+..|+.+.-+||++...+.+++..++--.|=+-++.
T Consensus 969 vLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss~ 1029 (1076)
T KOG0904|consen 969 VLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSSK 1029 (1076)
T ss_pred EeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccccH
Confidence 999999999975442 2579999999999999999999999999987766544433
No 34
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=99.93 E-value=5.1e-26 Score=238.21 Aligned_cols=155 Identities=19% Similarity=0.294 Sum_probs=125.3
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
++|+|+|+|+. ++++||||+|+|+||+.|.||+|++ +|+|+||||||||++||.+|.++++|++| +|+ ..++
T Consensus 2 ~~f~~~v~V~~-Sk~~Pkri~~~gsDG~~y~fLlK~~---dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViP 77 (307)
T cd05170 2 ESVGSTVTILP-TKTKPKKLAFLGSDGKKYTYLFKGR---EDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTP 77 (307)
T ss_pred ccccCeEEEEe-cCCCceEEEEECCCCCEEEEEecCC---CcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEE
Confidence 49999999995 6899999999999999999999994 99999999999999999999999999988 443 3333
Q ss_pred c---------------------cccCCC--------------CC----------------------------------hh
Q psy15442 168 L---------------------LYCLGS--------------PA----------------------------------SS 178 (599)
Q Consensus 168 L---------------------~~c~~~--------------~~----------------------------------~~ 178 (599)
| .||... .. ..
T Consensus 78 Ls~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 157 (307)
T cd05170 78 LGPRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPL 157 (307)
T ss_pred cCCCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccH
Confidence 3 122100 00 01
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccceeeecCCCCCCCcccc
Q psy15442 179 QVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGSDRQTD 252 (599)
Q Consensus 179 ~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gsv~~tD 252 (599)
..+.++|++++++ +|.++++++++.+++++++||..|++|+.++ |||||+|||||+++++ +..+|.+..+|
T Consensus 158 ~~~~~~~~~i~~~-~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli--~~~tG~v~hiD 234 (307)
T cd05170 158 SVLRQVLDELMQE-TPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLI--DLKTGEVVHID 234 (307)
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEE--EcCCCcEEEEe
Confidence 2468899999976 7888999999999999999999999998555 8999999999999974 44555544444
Q ss_pred c
Q psy15442 253 T 253 (599)
Q Consensus 253 l 253 (599)
+
T Consensus 235 f 235 (307)
T cd05170 235 Y 235 (307)
T ss_pred e
Confidence 4
No 35
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=99.93 E-value=1.1e-25 Score=232.96 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=125.9
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
.||+|+|.|+.+ ++.||||+|+|+||+.|.|++|++ +|+|+|||+||||++||++|.+++||++| +++ ..++
T Consensus 2 ~~f~~~v~v~~s-~~~Pkri~~~gsdG~~y~fl~K~~---dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vip 77 (279)
T cd05171 2 SKFKDVFTTAGG-INAPKIITCVGSDGKKYKQLLKGG---DDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVP 77 (279)
T ss_pred CCccCeEEEecC-CCCCEEEEEECCCCCEEEEEecCC---CcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEe
Confidence 399999999976 577999999999999999999995 99999999999999999999999999988 442 3333
Q ss_pred c---------------------cccC---C-CC-----------------ChhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q psy15442 168 L---------------------LYCL---G-SP-----------------ASSQVMCDILRDIQSKLIPRTMLKHWALHT 205 (599)
Q Consensus 168 L---------------------~~c~---~-~~-----------------~~~~~k~eif~~i~~~~vp~~ll~~~~~~~ 205 (599)
| .+|. . .+ .....|+++|++++++..| ++++||++.
T Consensus 78 ls~~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p--~l~~~f~~~ 155 (279)
T cd05171 78 LSPRAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRP--VFRYFFLEK 155 (279)
T ss_pred cCCCceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcH--HHHHHHHHH
Confidence 3 1211 0 11 1124588999999998776 899999999
Q ss_pred cCCChhHHHHHHHHHHHh------hccccccccCccceeeecCCCCCCCccccc
Q psy15442 206 FLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 206 ~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gsv~~tDl 253 (599)
++++++||.+|++|+.++ +||||+|||||.++++ +..+|.+..+|+
T Consensus 156 ~~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll--~~~tG~v~hiDf 207 (279)
T cd05171 156 FLDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILI--DEKTAEVVHIDL 207 (279)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEE--EcCcCcEEEEec
Confidence 999999999999999665 8999999999999974 555555555544
No 36
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=99.92 E-value=5.7e-25 Score=227.67 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=126.8
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
+||+|+|.|+. ++++||||+|+|+||+.|.|++|++ +|+|+|||+||||++||.+|.+++|||+| +|+ ..++
T Consensus 2 ~~f~~~v~v~~-s~~~pk~i~~~gsdG~~y~fl~K~~---dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vip 77 (280)
T cd05169 2 SSFDPVLKVIP-SKQRPRRLTIVGSDGKEYKFLLKGH---EDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIP 77 (280)
T ss_pred ccccCeEEEEe-CCCCCeEEEEECCCCCEEEEeecCC---CcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEe
Confidence 39999999998 4699999999999999999999984 99999999999999999999999999988 443 2333
Q ss_pred c-------c--------------ccCC---CC-------------C----hhhHHHHHHHHHHHhcCChhHHHHHHHHHc
Q psy15442 168 L-------L--------------YCLG---SP-------------A----SSQVMCDILRDIQSKLIPRTMLKHWALHTF 206 (599)
Q Consensus 168 L-------~--------------~c~~---~~-------------~----~~~~k~eif~~i~~~~vp~~ll~~~~~~~~ 206 (599)
+ + ||.. .. . ....|.++|++++++ +|+++|++|++..+
T Consensus 78 ls~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~-~~~~~l~~~~~~~~ 156 (280)
T cd05169 78 LSPNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNN-TPGDDLRKILWLKS 156 (280)
T ss_pred cCCCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHh-CCHHHHHHHHHHhC
Confidence 3 1 2210 00 0 113589999999887 89999999999999
Q ss_pred CCChhHHHHHHHHHHHh------hccccccccCccceeeecCCCCCCCccccc
Q psy15442 207 LSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 207 ~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gsv~~tDl 253 (599)
+++++||..|++|+.++ |||||+|||||.++++ +..+|.+..+|+
T Consensus 157 ~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll--~~~tG~v~HIDf 207 (280)
T cd05169 157 PSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMI--DRLTGKVIHIDF 207 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEE--EcCCCCEEEEec
Confidence 99999999999998555 8999999999999975 444555444444
No 37
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=99.89 E-value=2.6e-23 Score=210.16 Aligned_cols=147 Identities=21% Similarity=0.245 Sum_probs=116.5
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
++|+|+|.|+.+ +++||||+|+|+||+.|.|++|++ +|+|+|||+||||++||++|.+++||++| +++ ..++
T Consensus 2 ~~~~~~v~v~~S-~~~Pkri~~~~~dG~~~~fl~K~~---dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vip 77 (235)
T cd05172 2 VGFDERVLVLSS-LRKPKRITIRGSDEKEYPFLVKGG---EDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIP 77 (235)
T ss_pred CCcCCceEEecc-CCCCEEEEEECCCCCEEEEEEECC---CcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEE
Confidence 499999999975 699999999999999999999994 99999999999999999999999999987 443 4455
Q ss_pred c-cccC---CCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccce
Q psy15442 168 L-LYCL---GSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKK 237 (599)
Q Consensus 168 L-~~c~---~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki 237 (599)
+ +.|. --++ ..-+.+|.+. +++++|+++.++++++||..|++|+.++ +|+||+|||||.++
T Consensus 78 ls~~~GlIE~v~~-----~~sl~~i~~~----~~l~~~~~~~~~~~~~~~~~r~~F~~S~A~~S~~~YilglgDRH~~NI 148 (235)
T cd05172 78 MTPRFGLIEWLEN-----TTPLKEILKN----DLLRRALVEMSASPEAFLSLRDHFAKSLAAMCVSHWILGIGDRHLSNF 148 (235)
T ss_pred eCCCCceEEEcCC-----chhHHHHHhh----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhheeeccCCCcccE
Confidence 5 2221 0111 1112233322 8899999999999999999999999666 89999999999999
Q ss_pred eeecCCCCCCCccccc
Q psy15442 238 TFWISPSMGSDRQTDT 253 (599)
Q Consensus 238 ~F~vsps~gsv~~tDl 253 (599)
++ +..+|.+..+|+
T Consensus 149 li--~~~tG~v~HIDf 162 (235)
T cd05172 149 LV--DLETGGLVGIDF 162 (235)
T ss_pred EE--ECCCCcEEEEee
Confidence 74 555565555554
No 38
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=99.88 E-value=1.9e-22 Score=202.24 Aligned_cols=142 Identities=23% Similarity=0.312 Sum_probs=113.7
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
.+|+|+|.|+.+ +++||||+|+|+||+.|.|++|++ +|+|+|||+||||+++|.++.++.||++| +|+ ..++
T Consensus 2 ~~~~~~v~v~~S-~~~P~~i~~~~~dG~~~~fl~K~~---dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vip 77 (222)
T cd05164 2 ASFDDAVRILGS-KQKPKKITLTGSDGKKYLFLVKGG---EDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIP 77 (222)
T ss_pred ccccCeeEEecc-cCCCEEEEEECCCCCEEEEEEeCC---CcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEE
Confidence 399999999965 699999999999999999999994 99999999999999999999999999987 443 3444
Q ss_pred c-cccC---CCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccce
Q psy15442 168 L-LYCL---GSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKK 237 (599)
Q Consensus 168 L-~~c~---~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki 237 (599)
+ +.|. --++..++. +++++|+++.++++++||..|++|+.++ +|++|+|||||.++
T Consensus 78 ls~~~GliE~v~~~~sl~--------------~~l~~~~~~~~~~~~~~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NI 143 (222)
T cd05164 78 LNSRSGLIEWVEGTTTLK--------------PVLKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNI 143 (222)
T ss_pred cCCCCceEEEcCCcchHH--------------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceE
Confidence 4 1221 011111122 7899999999999999999999998666 79999999999999
Q ss_pred eeecCCCCCCCccccc
Q psy15442 238 TFWISPSMGSDRQTDT 253 (599)
Q Consensus 238 ~F~vsps~gsv~~tDl 253 (599)
++ +..+|.+..+|+
T Consensus 144 li--~~~tG~v~hIDf 157 (222)
T cd05164 144 LI--DRETGEVVHIDF 157 (222)
T ss_pred EE--ECCCCcEEEEcc
Confidence 75 444454443433
No 39
>KOG0903|consensus
Probab=99.87 E-value=7.8e-22 Score=218.11 Aligned_cols=223 Identities=14% Similarity=0.185 Sum_probs=174.6
Q ss_pred ceeceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhh
Q psy15442 305 KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQ 384 (599)
Q Consensus 305 ~~y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~ 384 (599)
...+-+||. +||+|||....|++..|-.||..++ -.|.+++|.|+-++.+.||||-+++++|+++|-+.+.+
T Consensus 586 dL~SVIVKt---GdDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~- 657 (847)
T KOG0903|consen 586 DLRSVIVKT---GDDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPN- 657 (847)
T ss_pred ceEEEeeec---CchHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhcch-
Confidence 345667866 5999999999999999999999986 47999999999999999999999999999999887621
Q ss_pred hCCCCCCcHHHHHHHhhh------hhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccc
Q psy15442 385 IKIDYELPIVRYYDRLGT------LQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEF 458 (599)
Q Consensus 385 ~g~~~d~pi~~~~~kl~~------~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~ 458 (599)
...+..|+..... .++.+||..|+|+||+++|+|++.|||+.|||||. .|++ +|||||+-++.
T Consensus 658 -----~~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~-EGHI----IHIDFGFmLsn- 726 (847)
T KOG0903|consen 658 -----LASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDE-EGHI----IHIDFGFMLSN- 726 (847)
T ss_pred -----hhhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEecC-CCCE----EEEeeeeEecC-
Confidence 1223344333221 35788999999999999999999999999999997 6999 99999975432
Q ss_pred cccchhhhcccchhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCc----ccHHHHH
Q psy15442 459 NNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDG----PLTASII 534 (599)
Q Consensus 459 ~~~~~~Fe~~~~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG----~F~~~~~ 534 (599)
+| |+ -..|..||.||.+++++|| |++| -|+.-|.
T Consensus 727 --------------sP---------------gn-----------vgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l 764 (847)
T KOG0903|consen 727 --------------SP---------------GN-----------VGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLML 764 (847)
T ss_pred --------------CC---------------CC-----------cccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 23 21 2569999999999999999 7887 5777888
Q ss_pred HHHHHhcCCchhHHHHHHHHhccchhhhhhhcc-------CCCCCcccchhhHHhhccCCC
Q psy15442 535 ATARCLVQPNFQVHAILKAILRDEMIAIQKKVK-------CSYLPIIINFQNREMGGKLEK 588 (599)
Q Consensus 535 ~~~~~L~~~~~~l~~~L~~fl~Dpl~~W~~~~~-------~~~~~~~~~~~~~~~~~~l~~ 588 (599)
.-..++|++.+.|..+.+++=.+.-..=+.... .-++=...|.|+.+.+..|..
T Consensus 765 ~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~ 825 (847)
T KOG0903|consen 765 QGFMALRKHADRIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLIS 825 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcccccChHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 888999999999999999987754333222211 011223577788887777653
No 40
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=99.87 E-value=7.5e-22 Score=199.76 Aligned_cols=147 Identities=20% Similarity=0.363 Sum_probs=115.5
Q ss_pred ccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cccc
Q psy15442 92 YRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYIS 167 (599)
Q Consensus 92 ~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~ 167 (599)
.+|+|++.|+.+ +++||+|+|+|+||+.|.|++|++ +|+|+|||+|||++++|++|.+++||+++ +++ ..++
T Consensus 2 ~~~~~~~~v~~s-~~~P~~i~~~~~dG~~~~~l~K~~---dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vip 77 (237)
T cd00892 2 SGFEDEVEILNS-LQKPKKITLIGSDGNSYPFLCKPK---DDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIP 77 (237)
T ss_pred ccccCeEEEEec-cCCceEEEEEcCCCCEEEEEEeCC---CcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEE
Confidence 399999999987 499999999999999999999994 89999999999999999999999999987 443 3444
Q ss_pred c-------cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCc
Q psy15442 168 L-------LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVP 234 (599)
Q Consensus 168 L-------~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P 234 (599)
+ ++..+... +.++.++.- +++|++|+.+.++++++||..|++|+.++ +|+||+|||||
T Consensus 78 l~~~~GlIE~v~~~~s--------l~~i~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilgigDRh~ 148 (237)
T cd00892 78 LNEECGIIEWVPNTAT--------LRSILLEIY-PPVFHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYILGLGDRHG 148 (237)
T ss_pred cCCCCceEEECCCCcc--------HHHHHHHhC-CHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 4 22222211 122222222 47899999999999999999999999666 79999999999
Q ss_pred cceeeecCCCCCCCccccc
Q psy15442 235 GKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 235 ~ki~F~vsps~gsv~~tDl 253 (599)
.++++ +..+|.+..+|+
T Consensus 149 ~NIli--~~~tG~~~HIDf 165 (237)
T cd00892 149 ENILF--DSNTGDVVHVDF 165 (237)
T ss_pred ccEEE--EcCCCcEEEEeh
Confidence 99985 333444333333
No 41
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.84 E-value=1.6e-20 Score=206.25 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=116.9
Q ss_pred ceeEEEEEecCCce-----------eceEeecCCCCccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCC
Q psy15442 293 AARRLYIRGHNGKI-----------YPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQ 361 (599)
Q Consensus 293 ~pkri~i~GsdG~~-----------y~flvk~~kg~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~ 361 (599)
.|--+-+..-+|.. |.|++|. +|+||||.+.|++++|+.+|+++. .+|.+++|.|++++++
T Consensus 1027 ~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~----gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~d 1098 (1374)
T PTZ00303 1027 APVTSPVTAVNGVSPESLHDSLPQECMFLYKR----ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCD 1098 (1374)
T ss_pred cceeeeeeccCCcCccccccccchheeEEEec----CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCC
Confidence 56667777778877 9999965 699999999999999999999975 6999999999999999
Q ss_pred ceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHHHHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCc
Q psy15442 362 LRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGL 441 (599)
Q Consensus 362 ~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~ 441 (599)
.|+||.+++ .++.+|.+.. +..|+.. ...+...||+.|+|.||+++|+|||||||++||||+. +|+
T Consensus 1099 sGLIEfVps-~tLAsI~~~~-----------Il~YLr~-~~t~~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGh 1164 (1374)
T PTZ00303 1099 SGLIEKAEG-RELSNLDNMD-----------IASYVLY-RGTRSCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGA 1164 (1374)
T ss_pred cccEEEecc-hHHHHhhhhH-----------HHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCC
Confidence 999999997 4677774421 4444332 2233457999999999999999999999999999997 799
Q ss_pred eeeeeeeeeccCcccc
Q psy15442 442 LNVSYFKFDIDDSKGE 457 (599)
Q Consensus 442 v~~~~~hiDf~~~~g~ 457 (599)
+ ||||||+.+|+
T Consensus 1165 L----fHIDFGFILg~ 1176 (1374)
T PTZ00303 1165 L----LHIDFRFIFSE 1176 (1374)
T ss_pred E----EEEecceeecC
Confidence 9 99999998773
No 42
>KOG0902|consensus
Probab=99.82 E-value=6.6e-20 Score=212.22 Aligned_cols=188 Identities=17% Similarity=0.203 Sum_probs=152.2
Q ss_pred CccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHH
Q psy15442 317 LSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRY 396 (599)
Q Consensus 317 ~~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~ 396 (599)
+||+|||....|++.++..+|..- ..++.+-+|.|+|.+|.||+||.+||+.|=.++ |.+.|..+..|
T Consensus 1553 GDDcRQD~LaLQiislf~~if~~~----gLd~~lfPYrV~aT~pGcGVIEviPn~~SRdql--------Gr~t~~glyey 1620 (1803)
T KOG0902|consen 1553 GDDCRQDMLALQIISLFKNIFQLV----GLDLYLFPYRVVATAPGCGVIEVIPNSKSRDQL--------GRETDNGLYEY 1620 (1803)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHc----CCceEEeeeeeeccCCCCceEEeCCCCccHHHh--------cccccccHHHH
Confidence 599999999999999999999975 468899999999999999999999999886654 44444445444
Q ss_pred HHH-h------hhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCccccccccchhhhccc
Q psy15442 397 YDR-L------GTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLS 469 (599)
Q Consensus 397 ~~k-l------~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~~~~~~~Fe~~~ 469 (599)
++. . .-.+||.||++|+|+||+++|.|.+.|||+.|||+|. -|++ +|||||.. ||.
T Consensus 1621 F~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd-~G~~----iHIDFGf~----------~e~-- 1683 (1803)
T KOG0902|consen 1621 FTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDD-QGHI----IHIDFGFM----------FES-- 1683 (1803)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEcc-CCCE----EEEeeeeE----------Eec--
Confidence 432 2 1245899999999999999999999999999999996 7999 99999964 663
Q ss_pred chhHHHHhhhcccccccccCCCchhhhhhhccCCCCCCCcccccHHHHHHhccCCCCc---ccHHHHHHHHHHhcCCchh
Q psy15442 470 DSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIMEFLTDIGVDG---PLTASIIATARCLVQPNFQ 546 (599)
Q Consensus 470 ~~~~~~~~~k~~~~~~~~~d~~g~~~~~~~~~l~~pE~VPFRLT~Ni~~~lg~~gveG---~F~~~~~~~~~~L~~~~~~ 546 (599)
.| ||.+ .-|. ||.||.+|+..||+.-..- -|..-|+...-|.|...+.
T Consensus 1684 ---sP------------------------Ggnl-~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~ 1734 (1803)
T KOG0902|consen 1684 ---SP------------------------GGNL-GFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDA 1734 (1803)
T ss_pred ---CC------------------------CCcc-CcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHH
Confidence 12 2334 3477 9999999999999432122 4666777777788999999
Q ss_pred HHHHHHHHhccchhhh
Q psy15442 547 VHAILKAILRDEMIAI 562 (599)
Q Consensus 547 l~~~L~~fl~Dpl~~W 562 (599)
+.+..+.|+...|=++
T Consensus 1735 iv~~V~~mldsgLPCf 1750 (1803)
T KOG0902|consen 1735 IVSLVQSMLDSGLPCF 1750 (1803)
T ss_pred HHHHHHHHHhcCCCcc
Confidence 9999999998887776
No 43
>KOG0891|consensus
Probab=99.81 E-value=6.8e-21 Score=235.08 Aligned_cols=185 Identities=26% Similarity=0.341 Sum_probs=150.3
Q ss_pred CcccccccCchhhccCCCCCeEecCCccCCCCCCCceEEEeCCchhhhhhhhhcccccccccceEEEEecCCceeeEEEE
Q psy15442 34 KSCLIEEKCRYLSNFNLHTAEIELPGEYLLPKHSHYYVRISSPISELRMIHKVYSILFYRFMPRVDIVEKHNTAARRLYI 113 (599)
Q Consensus 34 ~~~~L~~~S~~L~~f~~~~~~ievPGqy~~~~~~~~~vri~~~~~~~~~~~~~~~~~~~~f~p~v~v~~~~~~~~rri~i 113 (599)
++..+.++||.|..-+. .+++|||+|.+.+. +++|+ .|.|++.++.+ +++||++.|
T Consensus 1925 ~sl~l~~vSp~L~~~~d--lel~vPgty~~~~~---~i~i~------------------~f~~~~~vits-kqRprkl~i 1980 (2341)
T KOG0891|consen 1925 TSLDLQYVSPKLLSAKD--LELAVPGTYDPGKP---IIRIQ------------------SFEPKFNVITS-KQRPRKLVI 1980 (2341)
T ss_pred HhHHHHhhccccccccc--ceeccCCccCCCce---EEehh------------------hccHHHHHHHH-HhhhHHHhh
Confidence 35556799999988775 89999999998865 99999 99999999975 799999999
Q ss_pred EecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc----cccccccc----------cccCC------
Q psy15442 114 RGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT----TKMVYISL----------LYCLG------ 173 (599)
Q Consensus 114 ~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r----iR~s~~~L----------~~c~~------ 173 (599)
+|+||+.|+|++|+ |+|.|+||||||||+++|++|.++++|+|| .|.+.+++ ++|+.
T Consensus 1981 ~gs~g~d~~~~lkg---hed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r 2057 (2341)
T KOG0891|consen 1981 RGSDGKDYQYLLKG---HEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIR 2057 (2341)
T ss_pred cccchhhHHHHhhc---hhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHHHH
Confidence 99999999999999 799999999999999999999999999999 46666665 46651
Q ss_pred --------------------CCCh----hhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHH------HHh
Q psy15442 174 --------------------SPAS----SQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVS------SFF 223 (599)
Q Consensus 174 --------------------~~~~----~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fa------s~l 223 (599)
++++ ...|+++|++...+.-.+|+.+.+|+++ +++|.|...|..++ +++
T Consensus 2058 ~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS-~ssEaw~~rrt~yt~S~A~msmv 2136 (2341)
T KOG0891|consen 2058 EYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKS-PSSEAWLDRRTNYTRSLAVMSMV 2136 (2341)
T ss_pred HHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhC-CChhHHHHHhhhhHHHHHHHHHH
Confidence 2233 2459999999999888889998888875 44555555555555 566
Q ss_pred hccccccccCccceeeecCCCCCCC
Q psy15442 224 GQNLHHHFRVPGKKTFWISPSMGSD 248 (599)
Q Consensus 224 ~yiLgigdR~P~ki~F~vsps~gsv 248 (599)
+|++|+|||||.+.+ +...+|.+
T Consensus 2137 gyilGlGdrhpsNlm--ldr~tgkv 2159 (2341)
T KOG0891|consen 2137 GYILGLGDRHPSNLM--LDRLTGKV 2159 (2341)
T ss_pred HHHhhccccchhhhh--hhhcccce
Confidence 999999999999665 33444443
No 44
>KOG0890|consensus
Probab=99.79 E-value=5.4e-20 Score=222.15 Aligned_cols=145 Identities=22% Similarity=0.392 Sum_probs=122.9
Q ss_pred ccccccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-cc
Q psy15442 90 LFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VY 165 (599)
Q Consensus 90 ~~~~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~ 165 (599)
|+++|+..|+|..| .|+||+|+++|+|||.|+|++|+ .+|+|+|.|+|+|-.++|.+|.||.|+||| ||+ ++
T Consensus 2042 ~IsgF~d~V~Il~S-LqKPKkI~l~GsDGk~Y~~lCKp---KDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaV 2117 (2382)
T KOG0890|consen 2042 YISGFSDEVKILNS-LQKPKKIKLRGSDGKIYPFLCKP---KDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAV 2117 (2382)
T ss_pred hhhcchHHHHHHHh-ccCCeEEEEEcCCCCEeEEEeCc---hhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEE
Confidence 56699999999975 69999999999999999999999 599999999999999999999999999998 896 77
Q ss_pred ccc-cccC-----------------------C------------CC-ChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCC
Q psy15442 166 ISL-LYCL-----------------------G------------SP-ASSQVMCDILRDIQSKLIPRTMLKHWALHTFLS 208 (599)
Q Consensus 166 ~~L-~~c~-----------------------~------------~~-~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s 208 (599)
+|| +-|. . +. .....|.++|.+..-...| .+|.+||..+||+
T Consensus 2118 iPLneeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~lpkfP-PVFheWFl~~FPe 2196 (2382)
T KOG0890|consen 2118 IPLNEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLLPKFP-PVFHEWFLESFPE 2196 (2382)
T ss_pred eecCCccceEEecCCcchHHHHHHHHHHhccccchhhHHHHhcCcHhhcccchhhhhHHhhcccCC-cHHHHHHHHhCCC
Confidence 777 2232 0 00 1123467778765433344 5999999999999
Q ss_pred ChhHHHHHHHHH------HHhhccccccccCccceee
Q psy15442 209 ATDYWTFRKMVS------SFFGQNLHHHFRVPGKKTF 239 (599)
Q Consensus 209 ~e~~w~~Rk~fa------s~l~yiLgigdR~P~ki~F 239 (599)
|..|+.-|++++ ||+|||||+||||-.+|+|
T Consensus 2197 P~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILF 2233 (2382)
T KOG0890|consen 2197 PGSWFASRNNYARTTAVMSMVGYILGLGDRHGENILF 2233 (2382)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCccccccceee
Confidence 999999999965 7889999999999999998
No 45
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=99.77 E-value=1.3e-18 Score=174.30 Aligned_cols=139 Identities=25% Similarity=0.279 Sum_probs=108.7
Q ss_pred cccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc--ccc-ccccc-
Q psy15442 93 RFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT--TKM-VYISL- 168 (599)
Q Consensus 93 ~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r--iR~-s~~~L- 168 (599)
.|.|.+.|+.+. ++||+|+++|+||+.|.|++|++ +|+|+|||++||++++|.++.+++ ++. +++ ..+++
T Consensus 3 ~~~~~~~v~~s~-~~P~~l~~~~~dg~~~~~l~K~~---ddlR~D~~~~ql~~~~n~il~~~~--~~~l~~~~y~vipls 76 (219)
T cd00142 3 IDVKICRIMPSK-TRPKKLTLIGADGKEYRILFKNG---DDLRQDERVLQFIRLMNKILKKEL--GLDLFLTTYSVIPLS 76 (219)
T ss_pred ccCCceEEEccc-CCCEEEEEEccCCCEEEEEEeCC---CchhHHHHHHHHHHHHHHHHHhCC--CCCceEEeEEEEEec
Confidence 899999999875 99999999999999999999995 899999999999999999999987 222 332 34444
Q ss_pred cccC---CCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 169 LYCL---GSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 169 ~~c~---~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
+.|. --++..++. +++++|+.+.++++++||..|++|++++ +|++|+|||||.++++
T Consensus 77 ~~~GlIE~v~~~~sl~--------------~~l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli 142 (219)
T cd00142 77 PRSGLIEVVPGSVTLE--------------DDLSKWLKRKSPDEDEWQEARENFISSLAGYSVAGYILGIGDRHPDNIMI 142 (219)
T ss_pred CCceEEEEeCCCchhH--------------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccEEE
Confidence 1221 011111111 7999999999999999999999999766 7999999999999975
Q ss_pred ecCCCCCCCccccc
Q psy15442 240 WISPSMGSDRQTDT 253 (599)
Q Consensus 240 ~vsps~gsv~~tDl 253 (599)
+..+|....+|+
T Consensus 143 --~~~~G~~~hIDf 154 (219)
T cd00142 143 --DLDTGKLFHIDF 154 (219)
T ss_pred --ECCCCeEEEEee
Confidence 444454444444
No 46
>KOG0892|consensus
Probab=99.60 E-value=1.6e-15 Score=185.00 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=130.7
Q ss_pred cccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---cccc-cccc
Q psy15442 93 RFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKMV-YISL 168 (599)
Q Consensus 93 ~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~s-~~~L 168 (599)
+|..+|.+.. .-..||-|+..||||++|.=|||++ ..|+|+|-=+.|.|+++|++|.++++|++| ||+. ++||
T Consensus 2445 s~~~~v~~~~-GinaPkiI~c~gSDG~~~kqLVK~g--nDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPl 2521 (2806)
T KOG0892|consen 2445 SFDDTVTFAG-GINAPKVITCVGSDGKTYKQLVKGG--NDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPL 2521 (2806)
T ss_pred ecccceeeec-CccCCeEEEEEccCchhHHHHHhcc--cchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeec
Confidence 9999999887 5689999999999999999999977 589999999999999999999999999999 8874 4444
Q ss_pred -------cccCC-------------------CCC-----------------hhhHHHHHHHHHHHhcCChhHHHHHHHHH
Q psy15442 169 -------LYCLG-------------------SPA-----------------SSQVMCDILRDIQSKLIPRTMLKHWALHT 205 (599)
Q Consensus 169 -------~~c~~-------------------~~~-----------------~~~~k~eif~~i~~~~vp~~ll~~~~~~~ 205 (599)
++|++ .|+ ....|.++|.++|++.-| +|+.+|+..
T Consensus 2522 s~~sGvlEwv~~tiplgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~P--vfryFflEk 2599 (2806)
T KOG0892|consen 2522 SPKAGVLEWVTNTIPLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRP--VFRYFFLEK 2599 (2806)
T ss_pred CcccceeecccCCeehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchH--HHHHHHHHh
Confidence 67763 011 123599999999998776 999999999
Q ss_pred cCCChhHHHHHHHHH------HHhhccccccccCccceeeecCCCCCCCccccc
Q psy15442 206 FLSATDYWTFRKMVS------SFFGQNLHHHFRVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 206 ~~s~e~~w~~Rk~fa------s~l~yiLgigdR~P~ki~F~vsps~gsv~~tDl 253 (599)
|++|.+|+.-|.++| |++|||||+||||-.+|+ ++..++.+-.+|+
T Consensus 2600 F~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNIL--id~~taEviHIDl 2651 (2806)
T KOG0892|consen 2600 FPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNIL--IDQQTAEVIHIDL 2651 (2806)
T ss_pred cCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhhee--ecccccceEEEee
Confidence 999999999999976 666999999999999997 4666666554544
No 47
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=99.50 E-value=1.8e-13 Score=145.81 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=97.2
Q ss_pred cccc-eEEEEecCCceeeEEEEEecC--CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc
Q psy15442 93 RFMP-RVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL 168 (599)
Q Consensus 93 ~f~p-~v~v~~~~~~~~rri~i~G~d--G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L 168 (599)
++.+ ++.|.. |+++|++|+++|+| |+.|.|++|++ +|+|+|+++||++++||+++.++.- .=++++ ..+++
T Consensus 61 ~i~~~~~~v~~-S~~~P~~l~f~~~d~~g~~~~~i~K~g---DDLRQD~l~~Qli~lm~~i~~~~~l-dL~l~~Y~vip~ 135 (353)
T cd05166 61 GIDVRECSYFN-SNALPLKISFVNADPMGENISVIFKAG---DDLRQDMLVLQMINIMDKIWLQEGL-DLRMITFRCLST 135 (353)
T ss_pred eEEcCceEEec-cccCceEEEEEecCCCCCEEEEEEeCC---CcccHHHHHHHHHHHHHHHHHhCCC-CceeEEEEEEEc
Confidence 4443 456665 57999999999999 99999999995 9999999999999999999987621 111222 22333
Q ss_pred -------cccCCCCChhhHHHHHHHHHH-HhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCc
Q psy15442 169 -------LYCLGSPASSQVMCDILRDIQ-SKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVP 234 (599)
Q Consensus 169 -------~~c~~~~~~~~~k~eif~~i~-~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P 234 (599)
++..+...... +..+-. .....++.+++|+.+..+++.+|-..|.+|+.++ ||+||+||||+
T Consensus 136 ~~~~GlIE~V~ns~tl~~----I~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~ 211 (353)
T cd05166 136 GYDRGMVELVPDAETLRK----IQVEEGLTGSFKDRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHN 211 (353)
T ss_pred CCCcceEEEeCCchhHHH----HHHHhCccccccchhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCC
Confidence 22222211111 111100 0123456789999999888888888999998554 89999999999
Q ss_pred cceee
Q psy15442 235 GKKTF 239 (599)
Q Consensus 235 ~ki~F 239 (599)
.++++
T Consensus 212 ~NILl 216 (353)
T cd05166 212 DNIML 216 (353)
T ss_pred CceEE
Confidence 99985
No 48
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=99.48 E-value=2.4e-13 Score=145.02 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=100.6
Q ss_pred cccce-EEEEecCCceeeEEEEEecC--CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc
Q psy15442 93 RFMPR-VDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL 168 (599)
Q Consensus 93 ~f~p~-v~v~~~~~~~~rri~i~G~d--G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L 168 (599)
++.+. +.|+.| +++|++|++.|+| |+.|.|++|++ +|+|+|+|+||++++||.++.++.- .-++++ ..+++
T Consensus 61 ~i~~~~~~v~~S-~~~P~~l~f~~~d~~g~~~~~i~K~g---DDLRqD~l~~Ql~~l~~~i~~~~~l-dl~l~~Y~Vip~ 135 (352)
T cd00891 61 GLIIEKCKVMDS-KKKPLWLVFKNADPSGEPIKVIFKVG---DDLRQDMLTLQMIRLMDKIWKKEGL-DLRMTPYGCIAT 135 (352)
T ss_pred EEeccceEEecc-ccCCcEEEEEecCCCCCEEEEEeccC---CchhHHHHHHHHHHHHHHHHHHCCC-CeeeEEEEEEEc
Confidence 77764 777765 6999999999999 99999999995 9999999999999999999987631 111332 23333
Q ss_pred -------cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCcc
Q psy15442 169 -------LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPG 235 (599)
Q Consensus 169 -------~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ 235 (599)
++..+.......+.+- ... .....++.+.+|+.+..+++++|...|..|+.++ ||+|||||||+.
T Consensus 136 ~~~~GlIE~V~ns~tl~~I~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~ 213 (352)
T cd00891 136 GDGVGMIEVVPNSETIAKIQKKA-GGV-GGAFKDNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHND 213 (352)
T ss_pred cCCceEEEEeCCCccHHHHHHhc-Ccc-ccccccchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCC
Confidence 2333322222222110 000 0022356788999999888888989999998554 899999999999
Q ss_pred ceee
Q psy15442 236 KKTF 239 (599)
Q Consensus 236 ki~F 239 (599)
++++
T Consensus 214 NILi 217 (352)
T cd00891 214 NIML 217 (352)
T ss_pred ceEE
Confidence 9985
No 49
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.47 E-value=7.3e-14 Score=140.54 Aligned_cols=128 Identities=30% Similarity=0.411 Sum_probs=77.1
Q ss_pred eeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc---------------------cccCC---C
Q psy15442 120 IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL---------------------LYCLG---S 174 (599)
Q Consensus 120 ~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L---------------------~~c~~---~ 174 (599)
+|.|++|++ +|.|+|||+||+++++|.+|.++.++++ +++ ..+++ .+|.. .
T Consensus 1 ~y~~l~K~~---dDlr~D~~~~ql~~~~n~~l~~~~~~~~-~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~ 76 (235)
T PF00454_consen 1 EYSFLVKGG---DDLRQDERVMQLFRLMNRILKKEGETRE-IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHS 76 (235)
T ss_dssp -EEEEEEES---S-CHHHHHHHHHHHHHHHHHHHTT----------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTT
T ss_pred CceEEEECC---chhhchhHHHHHHHHHHHHHhcCCCCce-EEEeEEEecCCCCceeEEeccccchhHhhcccccccccc
Confidence 599999994 9999999999999999999999988887 443 12222 23322 1
Q ss_pred CChhhHH-HHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccceeeecCCCCCC
Q psy15442 175 PASSQVM-CDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGS 247 (599)
Q Consensus 175 ~~~~~~k-~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gs 247 (599)
.+....+ .....+.+.+.+|.+.+.+||.+.++++++||.+|++|++++ +|++|+|||||.++++ ...+|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili--~~~~g~ 154 (235)
T PF00454_consen 77 NDNPSRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILI--DKKTGE 154 (235)
T ss_dssp CSC------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE---ETTSE
T ss_pred ccccccccccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhhee--ccccce
Confidence 1111111 111155667789999999999999999999999999999766 7999999999999985 445555
Q ss_pred Cccccc
Q psy15442 248 DRQTDT 253 (599)
Q Consensus 248 v~~tDl 253 (599)
+..+|.
T Consensus 155 ~~hIDf 160 (235)
T PF00454_consen 155 LIHIDF 160 (235)
T ss_dssp EEE--H
T ss_pred eeeEEe
Confidence 544544
No 50
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=99.46 E-value=1e-13 Score=137.34 Aligned_cols=112 Identities=27% Similarity=0.287 Sum_probs=83.5
Q ss_pred eEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-ccccc-cccC---CCCChhhHHHHHHHHHHHhcC
Q psy15442 122 PYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYISL-LYCL---GSPASSQVMCDILRDIQSKLI 193 (599)
Q Consensus 122 ~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~L-~~c~---~~~~~~~~k~eif~~i~~~~v 193 (599)
+|++|++ +|+|+|||+|||++++|++|.+++||++| +++ ..+++ +.|. --++.. -+.+
T Consensus 1 ~~~~K~~---dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~-----sl~~------ 66 (202)
T smart00146 1 AVIFKGG---DDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNST-----TLHQ------ 66 (202)
T ss_pred CeeecCC---CcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCch-----hHHH------
Confidence 4889995 99999999999999999999999999998 443 33444 1111 011111 1111
Q ss_pred ChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccceeeecCCCCCCCccccc
Q psy15442 194 PRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 194 p~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gsv~~tDl 253 (599)
++++|+.+.++++++||..|++|+.++ +|++|+|||||.++++ + .+|.+..+|+
T Consensus 67 ---il~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli--~-~~G~v~hIDf 126 (202)
T smart00146 67 ---ILYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIML--D-KTGHLFHIDF 126 (202)
T ss_pred ---HHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEE--e-CCCCEEEEec
Confidence 289999999999999999999999666 7999999999999985 3 3555444444
No 51
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=99.38 E-value=3.9e-12 Score=135.59 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=93.1
Q ss_pred cccc-eEEEEecCCceeeEEEEEecCC---ceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-cccc
Q psy15442 93 RFMP-RVDIVEKHNTAARRLYIRGHNG---KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYIS 167 (599)
Q Consensus 93 ~f~p-~v~v~~~~~~~~rri~i~G~dG---~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~ 167 (599)
++.+ ++.|+.| .++|++|+++|+|| +.|.|++|++ +|+|+|+|+||++++||.++.++. ..-++++ ..++
T Consensus 65 ~i~~~~~~v~~S-~~~P~~l~f~~~dg~~~~~~~~i~K~g---DDLRqD~l~~Ql~~lm~~il~~~~-ldl~l~~Y~Vip 139 (350)
T cd00896 65 GIIPEESSVFKS-ALMPLKLTFKTEKGNEEGEYPVIFKVG---DDLRQDQLVIQIISLMDRLLKKEN-LDLKLTPYKVLA 139 (350)
T ss_pred EEecCceEEecc-ccCceEEEEEeCCCCCCceEEEEecCC---cchhHhHHHHHHHHHHHHHHHhCC-CCceeEEEEEEE
Confidence 5555 5777765 79999999999999 9999999995 999999999999999999999873 1111332 2333
Q ss_pred c-------cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhH----HHHHHHHHHHh------hcccccc
Q psy15442 168 L-------LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDY----WTFRKMVSSFF------GQNLHHH 230 (599)
Q Consensus 168 L-------~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~----w~~Rk~fas~l------~yiLgig 230 (599)
+ ++.. .+-+.+|+++.- -+.+|+.+..++...+ -..|.+|+.++ ||+||||
T Consensus 140 ~~~~~GlIE~V~---------s~tl~~i~~~~~---~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGig 207 (350)
T cd00896 140 TSPTDGLVEFIP---------SVTLASILKKYG---GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVG 207 (350)
T ss_pred cCCCCcceEEEe---------cccHHHHHHHHH---HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 1222 112222222211 1788888888776663 45677787544 8999999
Q ss_pred ccCccceee
Q psy15442 231 FRVPGKKTF 239 (599)
Q Consensus 231 dR~P~ki~F 239 (599)
|||+.++++
T Consensus 208 DRH~~NILi 216 (350)
T cd00896 208 DRHLDNLLL 216 (350)
T ss_pred ccCCCcEEE
Confidence 999999985
No 52
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=99.35 E-value=6.7e-12 Score=134.08 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=94.9
Q ss_pred cccce-EEEEecCCceeeEEEEEecC-----CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-cc
Q psy15442 93 RFMPR-VDIVEKHNTAARRLYIRGHN-----GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VY 165 (599)
Q Consensus 93 ~f~p~-v~v~~~~~~~~rri~i~G~d-----G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~ 165 (599)
++.++ +.|+. |+++|++|++.|+| |+.|.|++|++ +|+|+|+++||++++||+++.++.- --++++ ..
T Consensus 66 ~i~~~~~~v~~-Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~g---DDLRQD~l~lQli~lm~~i~~~~~l-dL~l~pY~v 140 (366)
T cd05165 66 ELRIEKCKVMD-SKKKPLWLVFENADPTALSNENVGIIFKNG---DDLRQDMLTLQILRIMDSIWKEEGL-DLRMLPYGC 140 (366)
T ss_pred eeecCceEEeh-hhcCCcEEEEEccCcccccCCceeEEEecC---CcccHHHHHHHHHHHHHHHHHhCCC-CceeEEEEE
Confidence 55554 55554 57999999999998 69999999995 9999999999999999999987621 111332 22
Q ss_pred ccc-------cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hcccccccc
Q psy15442 166 ISL-------LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFR 232 (599)
Q Consensus 166 ~~L-------~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR 232 (599)
+++ ++..++........+.-. .......++.+.+|+.+..++.++|-..+.+|+.++ +|+||||||
T Consensus 141 l~t~~~~GlIE~V~ns~tl~~I~~~~~~-~~~~~f~~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDR 219 (366)
T cd05165 141 LSTGDKIGLIEVVRDSTTIANIQQETGG-NATAAFKKEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDR 219 (366)
T ss_pred EEecCCceEEEEeCCchhHHHHHHhccc-ccccccCcHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 222 222222221111111000 000112345688899888776777777888998555 899999999
Q ss_pred Cccceee
Q psy15442 233 VPGKKTF 239 (599)
Q Consensus 233 ~P~ki~F 239 (599)
|+.++++
T Consensus 220 H~~NILi 226 (366)
T cd05165 220 HNDNIMV 226 (366)
T ss_pred CCcceEE
Confidence 9999985
No 53
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.30 E-value=3e-11 Score=128.75 Aligned_cols=138 Identities=10% Similarity=0.063 Sum_probs=89.3
Q ss_pred cceEEEEecCCceeeEEEEEecC--CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc---
Q psy15442 95 MPRVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL--- 168 (599)
Q Consensus 95 ~p~v~v~~~~~~~~rri~i~G~d--G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L--- 168 (599)
-.++.|+.| +++|++|++.|.| |+.|.|++|++ +|+|+|+++||++++||.++.++.-- =++++ ..+++
T Consensus 68 ~~~~~v~~S-k~~Pl~l~f~~~~~~g~~~~~IfK~g---DDLRQD~l~~Qli~lmd~i~k~~~ld-L~l~pY~vi~tg~~ 142 (361)
T cd05174 68 VDQCTFMDS-KMKPLWIMYKNEEAGGGSVGIIFKNG---DDLRQDMLTLQMIQLMDVLWKQEGLD-LRMTPYGCLSTGDK 142 (361)
T ss_pred cCcEEEEec-cCCceEEEEeecCCCCCEEEEEEeCC---CchhHHHHHHHHHHHHHHHHHHCCCC-eeeEEEEEEEecCC
Confidence 456777764 6999999999977 99999999995 99999999999999999999875210 01222 22222
Q ss_pred ----cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHH-HHHHHHHHh------hccccccccCccce
Q psy15442 169 ----LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWT-FRKMVSSFF------GQNLHHHFRVPGKK 237 (599)
Q Consensus 169 ----~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~-~Rk~fas~l------~yiLgigdR~P~ki 237 (599)
++..++......+.+--.........++.+.+|+.+.. +++.|. .+.+|+.++ +|||||||||+.++
T Consensus 143 ~GlIE~V~ns~Tl~~I~~~~~~~~~~~~f~~~~l~~~l~~~~--~~~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NI 220 (361)
T cd05174 143 TGLIEVVKNSDTIANIQLNKSNMAATAAFNKDALLNWLKSKN--PGDALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNI 220 (361)
T ss_pred ceEEEEeCCchhHHHHHHhhcccchhccccchHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHHHHHHhcccCcCccce
Confidence 22222211112111100000011123456788888754 345554 467787555 89999999999999
Q ss_pred ee
Q psy15442 238 TF 239 (599)
Q Consensus 238 ~F 239 (599)
+.
T Consensus 221 Li 222 (361)
T cd05174 221 MI 222 (361)
T ss_pred eE
Confidence 84
No 54
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=99.28 E-value=1.8e-11 Score=130.32 Aligned_cols=138 Identities=14% Similarity=0.082 Sum_probs=97.3
Q ss_pred cccc-eEEEEecCCceeeEEEEEecC--CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc
Q psy15442 93 RFMP-RVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL 168 (599)
Q Consensus 93 ~f~p-~v~v~~~~~~~~rri~i~G~d--G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L 168 (599)
++.| ...|..| +++|++|++.|.| |+.|.+++|.+ +|+|+|++++|++++||+++.++.- --++++ ..+++
T Consensus 62 ~i~~~~~~v~~S-~~~Pl~l~f~~~d~~~~~~~~IfK~g---DDLRQD~l~lQli~lmd~i~~~~~l-dl~l~pY~vl~t 136 (354)
T cd05177 62 GIDADACSYFTS-NAAPLKISFINANPLAKNISIIFKTG---DDLRQDMLVLQIVRVMDNIWLQEGL-DMQMIIYRCLST 136 (354)
T ss_pred EEecCccEEehh-hcCCCEEEEEecCCCCCeEEEEEeCC---CcccHHHHHHHHHHHHHHHHHHcCC-CceEEEEEEEec
Confidence 7776 4666654 6899999999999 89999999995 9999999999999999999987621 111222 11221
Q ss_pred -------cccCCCCChhhHHHHHHHHHH-HhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCc
Q psy15442 169 -------LYCLGSPASSQVMCDILRDIQ-SKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVP 234 (599)
Q Consensus 169 -------~~c~~~~~~~~~k~eif~~i~-~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P 234 (599)
++..++... .+|.++.. .....++.+.+|+....+++++|-..+.+|+.++ +|||||||||+
T Consensus 137 ~~~~GlIE~V~ns~tl----~~I~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn 212 (354)
T cd05177 137 GKTQGLVQMVPDAVTL----AKIHRESGLIGPLKENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHN 212 (354)
T ss_pred CCCceEEEEeCChHhH----HHHHHhhCCCcccchhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCC
Confidence 222221111 11111110 0112356788999998888888888889998555 89999999999
Q ss_pred cceee
Q psy15442 235 GKKTF 239 (599)
Q Consensus 235 ~ki~F 239 (599)
.++++
T Consensus 213 ~NILi 217 (354)
T cd05177 213 DNIML 217 (354)
T ss_pred CceeE
Confidence 99985
No 55
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=99.28 E-value=3.1e-11 Score=128.90 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=88.2
Q ss_pred cccce-EEEEecCCceeeEEEEEec--CCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc
Q psy15442 93 RFMPR-VDIVEKHNTAARRLYIRGH--NGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL 168 (599)
Q Consensus 93 ~f~p~-v~v~~~~~~~~rri~i~G~--dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L 168 (599)
++.++ ..|+ .|+++|.+|++.+. +|..|.|++|++ +|+|+|+++||++++||+++.+.. .--++++ ..+++
T Consensus 65 ~i~~~~~~v~-~S~~~Pl~l~f~~~~~~g~~~~~IfK~g---DDLRQD~l~lQli~lm~~i~k~~~-ldL~l~pY~vi~t 139 (362)
T cd05173 65 ELNVEKCKYM-DSKMKPLWIVYNNKLFGGDSLGIIFKNG---DDLRQDMLTLQILRLMDTLWKEAG-LDLRIVPYGCLAT 139 (362)
T ss_pred EEEcCceEEe-cccCCCeEEEEeecCCCCCEEEEEEeCC---CchhHHHHHHHHHHHHHHHHHHCC-CCeeeEEEEEEEc
Confidence 55555 5555 45799999999875 799999999995 999999999999999999998751 0011332 22222
Q ss_pred -------cccCCCCChhhHHHHHHHHHH-HhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCc
Q psy15442 169 -------LYCLGSPASSQVMCDILRDIQ-SKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVP 234 (599)
Q Consensus 169 -------~~c~~~~~~~~~k~eif~~i~-~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P 234 (599)
++..++........+- ..+. .....++.+.+|+.+. .+.++|-..+.+|+.++ +|||||||||+
T Consensus 140 ~~~~GlIE~V~ns~tl~~I~~~~-~~~~~~~~f~~~~l~~~l~~~-~~~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn 217 (362)
T cd05173 140 GDRSGLIEVVSSAETIADIQLNS-SNVAAAAAFNKDALLNWLKEY-NSGDDLERAIEEFTLSCAGYCVATYVLGIGDRHS 217 (362)
T ss_pred cCCceEEEEeCCchhHHHHHHhc-cccchhcccChhHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 2222211111111100 0000 0112346778888764 23333333677787544 89999999999
Q ss_pred cceee
Q psy15442 235 GKKTF 239 (599)
Q Consensus 235 ~ki~F 239 (599)
.++++
T Consensus 218 ~NILi 222 (362)
T cd05173 218 DNIMV 222 (362)
T ss_pred CceEE
Confidence 99985
No 56
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=99.24 E-value=6.6e-11 Score=125.67 Aligned_cols=133 Identities=11% Similarity=0.089 Sum_probs=89.8
Q ss_pred EEEEecCCceeeEEEEEecC--CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-cccc------c
Q psy15442 98 VDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYIS------L 168 (599)
Q Consensus 98 v~v~~~~~~~~rri~i~G~d--G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~------L 168 (599)
..|. .|+++|++|++.+.| |+.|.+++|.+ +|+|+|++++|++.+||+++.+..--- ++++ ..++ +
T Consensus 67 c~v~-~S~~~Pl~l~f~~~d~~g~~~~~ifK~g---DDLRQD~l~lQli~lmd~i~~~~~ldL-~l~pY~vl~tg~~~Gl 141 (353)
T cd05176 67 CSFF-SSNAVPLKIALVNADPLGEEINVMFKVG---EDLRQDMLALQMIKIMDKIWLQEGLDL-RMVIFKCLSTGKDRGM 141 (353)
T ss_pred eEEe-cccCCceEEEEEccCCCCCEEEEEEeCC---CCccHHHHHHHHHHHHHHHHHHCCCCe-EEEEEEEEEcCCCceE
Confidence 3444 567999999999999 99999999995 999999999999999999997651110 1111 1111 1
Q ss_pred -cccCCCCChhhHHHHHHHHHH-HhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 169 -LYCLGSPASSQVMCDILRDIQ-SKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 169 -~~c~~~~~~~~~k~eif~~i~-~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
+.+.++....+ +..+-. .....+..+.+|+.+..++.++|-..|.+|+.++ +|+|||||||..++++
T Consensus 142 IE~V~ns~tl~~----I~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi 216 (353)
T cd05176 142 VELVPASETLRK----IQVEYGVTGSFKDKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIML 216 (353)
T ss_pred EEEeCCcHhHHH----HHHHhCcCCccccchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEE
Confidence 22222211111 111100 0012234577888877777777777888998655 7999999999999985
No 57
>KOG0889|consensus
Probab=99.22 E-value=1.3e-11 Score=154.32 Aligned_cols=119 Identities=39% Similarity=0.582 Sum_probs=99.2
Q ss_pred chhhHHHHHHHHHHHHHhcCcccccc---------------ccc-----ccccc-----cccCC----------------
Q psy15442 135 RRDERVLQLLRMLNHYLAKQVSTTTT---------------TKM-----VYISL-----LYCLG---------------- 173 (599)
Q Consensus 135 R~deRv~Qlf~~~N~~L~~~~et~~r---------------iR~-----s~~~L-----~~c~~---------------- 173 (599)
|+||||+||++++|..|.+++||+|| +|. ++++| .||..
T Consensus 3237 RreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l 3316 (3550)
T KOG0889|consen 3237 RREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRL 3316 (3550)
T ss_pred cHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHH
Confidence 79999999999999999999999999 222 34444 46752
Q ss_pred ---------CCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCcccee
Q psy15442 174 ---------SPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKT 238 (599)
Q Consensus 174 ---------~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~ 238 (599)
.++...+|.++|++++..++|.++++.|+.++++++++||+|||+|+.|+ +|++.+|.|.|.|..
T Consensus 3317 ~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k~~ 3396 (3550)
T KOG0889|consen 3317 AQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAKLT 3396 (3550)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCcccee
Confidence 12234569999999999999999999999999999999999999999888 689999999999987
Q ss_pred eecCCCCCCCccccccc
Q psy15442 239 FWISPSMGSDRQTDTEA 255 (599)
Q Consensus 239 F~vsps~gsv~~tDles 255 (599)
+ ...+|.++.+++..
T Consensus 3397 ~--~~dsG~v~~~~~~~ 3411 (3550)
T KOG0889|consen 3397 F--AKDSGKVFNTDFLP 3411 (3550)
T ss_pred e--eeccccccchhhcc
Confidence 5 55567777665543
No 58
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.7e-11 Score=155.06 Aligned_cols=142 Identities=23% Similarity=0.274 Sum_probs=109.4
Q ss_pred cccceEEEEecCCceeeEEEEEecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc---ccc-ccccc
Q psy15442 93 RFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT---TKM-VYISL 168 (599)
Q Consensus 93 ~f~p~v~v~~~~~~~~rri~i~G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r---iR~-s~~~L 168 (599)
+-.|+--.++.++-...++.+.|.|- - |+|+|+|||+++||++|.++++|+|| +|. ..+++
T Consensus 1781 ~~~p~rl~~rgsdG~~y~~i~K~~dD--------l-------RQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipl 1845 (2105)
T COG5032 1781 LQRPRRLTIRGSDGKLYSFIVKGGDD--------L-------RQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPL 1845 (2105)
T ss_pred cccceEEEEEecCCcEEEEEeecCcc--------c-------hHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEec
Confidence 56777777788888889999998553 3 79999999999999999999999999 563 33333
Q ss_pred -c--------------------ccCC---C--------C----ChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhH
Q psy15442 169 -L--------------------YCLG---S--------P----ASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDY 212 (599)
Q Consensus 169 -~--------------------~c~~---~--------~----~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~ 212 (599)
+ +|.. + + .....|.|.+..+. ...| ++|.+||+.+++++++|
T Consensus 1846 s~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~~f~~~f~~~~~w 1923 (2105)
T COG5032 1846 SPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKKLAARLDNLKLLLKDEFFTKAT-LKSP-PVLYDWFSESFPNPEDW 1923 (2105)
T ss_pred cCCcceEEEecCcchHHHHHHHHhhhcCCChhHHhhhhhhhhhhcccchhHHhhhhh-cCCC-chHHHHHHHhcCChhhH
Confidence 1 2321 0 0 11234777776554 4577 99999999999999999
Q ss_pred HHHHHHHHHHh------hccccccccCccceeeecCCCCCCCccccc
Q psy15442 213 WTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 213 w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gsv~~tDl 253 (599)
|..|++|++++ ||+||+|||||+++++ +..+|.+..+|+
T Consensus 1924 ~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIli--D~~sG~viHiDF 1968 (2105)
T COG5032 1924 LTARTNFARSLAVYSVIGYILGLGDRHPGNILI--DRSSGHVIHIDF 1968 (2105)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCcCCceEEE--EcCCCcEEEehH
Confidence 99999999666 8999999999999975 455666655555
No 59
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.17 E-value=1.9e-10 Score=122.89 Aligned_cols=136 Identities=11% Similarity=0.077 Sum_probs=94.0
Q ss_pred eEEEEecCCceeeEEEEEecCC-----ceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc--
Q psy15442 97 RVDIVEKHNTAARRLYIRGHNG-----KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL-- 168 (599)
Q Consensus 97 ~v~v~~~~~~~~rri~i~G~dG-----~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L-- 168 (599)
++.|+. |+++|.+|++.+.|| ..|.+++|.+ +|+|+|++++|++++||.++.++. .-=++++ ..+++
T Consensus 72 ~~~v~~-S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G---DDLRQD~l~lQli~lmd~i~~~~~-ldL~l~pY~vi~tg~ 146 (365)
T cd00894 72 KCKVMA-SKKKPLWLEFKCADPTALSNETIGIIFKHG---DDLRQDMLILQILRIMESIWETES-LDLCLLPYGCISTGD 146 (365)
T ss_pred ceEEEc-ccCCceEEEEECCCCCccCCCceeEEEeCC---CcccHHHHHHHHHHHHHHHHHHcC-CCeEEEEEEEEEecC
Confidence 455554 569999999999987 4789999995 999999999999999999997641 0001222 22222
Q ss_pred -----cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccce
Q psy15442 169 -----LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKK 237 (599)
Q Consensus 169 -----~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki 237 (599)
+...++......+.+.-. . .....++.+.+|+.+..+++++|-..+.+|+.++ +|||||||||..++
T Consensus 147 ~~GlIE~V~ns~tl~~I~~~~~~-~-~~~~k~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNI 224 (365)
T cd00894 147 KIGMIEIVKDATTIAKIQQSTVG-N-TGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNI 224 (365)
T ss_pred CceEEEEcCCchhHHHHHHhccc-c-cccccchhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccce
Confidence 222222111111111000 0 0113456889999999998999999999998666 79999999999999
Q ss_pred ee
Q psy15442 238 TF 239 (599)
Q Consensus 238 ~F 239 (599)
++
T Consensus 225 mi 226 (365)
T cd00894 225 MI 226 (365)
T ss_pred eE
Confidence 85
No 60
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=99.14 E-value=8.1e-11 Score=122.70 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=88.9
Q ss_pred CceeeEEEEEecCCc--eeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccccc-------cccCCC
Q psy15442 105 NTAARRLYIRGHNGK--IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYISL-------LYCLGS 174 (599)
Q Consensus 105 ~~~~rri~i~G~dG~--~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~~L-------~~c~~~ 174 (599)
.+++|+.+..|+.+. .|.|++|++ +|+|+|+|+|||+++||+++.++.- .-++++ ..+++ ++..+.
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~g---DDLRqD~l~~Ql~~~~~~i~~~~~l-~l~l~~Y~vip~~~~~GlIE~V~ns 90 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTG---DDLRQELLAMQLIQQFDRIFKEEGL-PLWLRPYEILVTSSNSGLIETIPDT 90 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCC---CCccHHHHHHHHHHHHHHHHHHCCC-CceeeeEEEEEccCCceeEEEeCCc
Confidence 578999999999888 899999995 9999999999999999999987511 011443 23333 222222
Q ss_pred CChhhHHHHHHHHHHHhcC-ChhHHHHHHHHHcCCCh-hHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 175 PASSQVMCDILRDIQSKLI-PRTMLKHWALHTFLSAT-DYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 175 ~~~~~~k~eif~~i~~~~v-p~~ll~~~~~~~~~s~e-~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
.. +.+|.++.- ..+.+.+||.+.+.+++ +|...|.+|+.++ |||||+||||+.++++
T Consensus 91 ~t--------l~~i~k~~~~~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi 155 (293)
T cd05168 91 VS--------IDSLKKKLTSKFKSLLDFFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILI 155 (293)
T ss_pred hh--------HHHHHHHhccCCchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEE
Confidence 22 223333322 25678999999998765 4556888888544 8999999999999985
No 61
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=98.98 E-value=6.5e-09 Score=110.67 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=93.2
Q ss_pred cccceEEEEecCCceeeEEEEEecC--CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-ccc---
Q psy15442 93 RFMPRVDIVEKHNTAARRLYIRGHN--GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VYI--- 166 (599)
Q Consensus 93 ~f~p~v~v~~~~~~~~rri~i~G~d--G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~~--- 166 (599)
++.++---+..|..+|-+|++++.| |..|..++|.+ .|+|+|+.++|++++||+++.+..--- +++. -.+
T Consensus 62 ~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G---DDLRQD~l~lQli~lmd~i~~~~~ldl-~l~pY~vl~tg 137 (354)
T cd00895 62 GIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG---DDLRQDMLTLQMIRIMNKIWVQEGLDM-RMVIFRCFSTG 137 (354)
T ss_pred EEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC---CCccHHHHHHHHHHHHHHHHHHcCCCc-eEEEEEEEecC
Confidence 4444333344457899999999999 99999999996 899999999999999999998762110 0111 001
Q ss_pred ---cc-cccCCCCChhhHHHHHHHHHHHh-----cCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccc
Q psy15442 167 ---SL-LYCLGSPASSQVMCDILRDIQSK-----LIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHF 231 (599)
Q Consensus 167 ---~L-~~c~~~~~~~~~k~eif~~i~~~-----~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigd 231 (599)
++ +.+.++ +.+.+|+++ ..-++.+.+|+.+..+++++|-..+.+|..++ +|+|||||
T Consensus 138 ~~~G~IE~V~ns--------~tl~~I~~~~g~~g~~~~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgD 209 (354)
T cd00895 138 RGRGMVEMIPNA--------ETLRKIQVEHGVTGSFKDRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICD 209 (354)
T ss_pred CCceEEEEeCCh--------hhHHHHHHHhCcCcccccchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 11 111111 112222211 12234688899988888888877888998655 78999999
Q ss_pred cCccceee
Q psy15442 232 RVPGKKTF 239 (599)
Q Consensus 232 R~P~ki~F 239 (599)
||..++++
T Consensus 210 RHndNImi 217 (354)
T cd00895 210 RHNDNIML 217 (354)
T ss_pred cCCCceeE
Confidence 99999985
No 62
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=98.85 E-value=2.5e-08 Score=104.92 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=88.6
Q ss_pred EEEEecCCceeeEEEEEecCCce-------------eeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc--cc
Q psy15442 98 VDIVEKHNTAARRLYIRGHNGKI-------------YPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT--TK 162 (599)
Q Consensus 98 v~v~~~~~~~~rri~i~G~dG~~-------------y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r--iR 162 (599)
..++.|+..+|-.+++...|+.. +..++|.+ +|+|+|+++||++.+||+++.+. ... ++
T Consensus 18 ~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~g---DDLRQD~l~~Qli~lm~~i~~~~---~ldl~l~ 91 (311)
T cd05167 18 GTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVG---DDCRQDMLALQLISLFKNIFQSA---GLDLYLF 91 (311)
T ss_pred cEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCC---CCccHHHHHHHHHHHHHHHHHHC---CCCeEeE
Confidence 34555544789999999988764 89999995 99999999999999999999864 122 33
Q ss_pred c-ccccc-------cccCCCCChhhHHHHHHHHHHHhcCChhHHHHHHHHHcCC--ChhHHHHHHHHHHHh------hcc
Q psy15442 163 M-VYISL-------LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLS--ATDYWTFRKMVSSFF------GQN 226 (599)
Q Consensus 163 ~-s~~~L-------~~c~~~~~~~~~k~eif~~i~~~~vp~~ll~~~~~~~~~s--~e~~w~~Rk~fas~l------~yi 226 (599)
+ ..+++ +...+... ..+|.+. ....+.+||.+.+.+ +++|-..|.+|+.++ +|+
T Consensus 92 ~Y~vi~t~~~~GlIE~V~ns~s--------~~~i~~~--~~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYi 161 (311)
T cd05167 92 PYRVVATGPGCGVIEVVPNSKS--------RDQIGRT--TDNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISYL 161 (311)
T ss_pred EEeEEecCCCceEEEEeCCcHH--------HHHHHhh--cccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222 22221111 1223222 234688999988764 467777888898555 799
Q ss_pred ccccccCccceee
Q psy15442 227 LHHHFRVPGKKTF 239 (599)
Q Consensus 227 LgigdR~P~ki~F 239 (599)
|||||||..++++
T Consensus 162 LgigDRHn~NILi 174 (311)
T cd05167 162 LQIKDRHNGNIMI 174 (311)
T ss_pred hhccccCccceEE
Confidence 9999999999985
No 63
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=98.80 E-value=4.1e-08 Score=104.83 Aligned_cols=134 Identities=14% Similarity=0.031 Sum_probs=88.2
Q ss_pred cccceEEEEecCCceeeEEEEEecCC------ceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCccccccccc-cc
Q psy15442 93 RFMPRVDIVEKHNTAARRLYIRGHNG------KIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKM-VY 165 (599)
Q Consensus 93 ~f~p~v~v~~~~~~~~rri~i~G~dG------~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~-s~ 165 (599)
++.++---+.+|+.+|.+|++.+.|| ..|..++|.+ +|+|+|+.++|++++||+++.+..- -=++++ ..
T Consensus 65 ~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G---DDLRQD~l~lQli~lmd~i~~~~~l-dL~l~pY~v 140 (366)
T cd05175 65 NLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG---DDLRQDMLTLQIIRIMENIWQNQGL-DLRMLPYGC 140 (366)
T ss_pred EEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC---CCccHHHHHHHHHHHHHHHHHHCCC-CeEEEEEEE
Confidence 55553333446789999999999999 4689999995 9999999999999999999987521 001221 11
Q ss_pred ccc-------cccCCCCChhhHHHHHHHHHHHhc-------CChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hc
Q psy15442 166 ISL-------LYCLGSPASSQVMCDILRDIQSKL-------IPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQ 225 (599)
Q Consensus 166 ~~L-------~~c~~~~~~~~~k~eif~~i~~~~-------vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~y 225 (599)
++. +.+.++.... +|+.+. ..++.+.+|+.+..+ .+.|-..|.+|+.++ +|
T Consensus 141 l~tg~~~GlIE~V~ns~tl~--------~I~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tY 211 (366)
T cd05175 141 LSIGDCVGLIEVVRNSHTIM--------QIQCKGGLKGALQFNSHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATF 211 (366)
T ss_pred EEecCCceEEEEcCCchhHH--------HHHhccccccccccCchhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2222211111 122110 223567778776543 344555788898655 79
Q ss_pred cccccccCccceee
Q psy15442 226 NLHHHFRVPGKKTF 239 (599)
Q Consensus 226 iLgigdR~P~ki~F 239 (599)
+|||||||+.++++
T Consensus 212 iLGIgDRHndNImi 225 (366)
T cd05175 212 ILGIGDRHNSNIMV 225 (366)
T ss_pred HhcccccCccceeE
Confidence 99999999999984
No 64
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=98.79 E-value=9e-09 Score=107.29 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=74.6
Q ss_pred CceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccc--ccc-ccccc-------cccCCCCChhhHHHHHHHH
Q psy15442 118 GKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTT--TKM-VYISL-------LYCLGSPASSQVMCDILRD 187 (599)
Q Consensus 118 G~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~r--iR~-s~~~L-------~~c~~~~~~~~~k~eif~~ 187 (599)
|+.|.|++|++ +|+|+|+|+|||+.+||+++.+. ... +++ ..+++ ++..+... +.+
T Consensus 30 ~~~~~~i~K~g---DDLRqD~l~~Ql~~l~~~i~~~~---~l~l~l~~Y~vi~~s~~~GlIE~V~ns~t--------l~~ 95 (289)
T cd00893 30 LINSEFIVKCG---DDLRQDILATQIITELQKIFELM---FLDLWLNPYLVLPVSKTGGIIEFIPNSIS--------IHE 95 (289)
T ss_pred CeeEEEEEECC---CcccHHHHHHHHHHHHHHHHHHc---CCCceeEEEEEEECCCCceeEEEeCCchh--------HHH
Confidence 46999999995 99999999999999999999875 222 332 22333 22222222 222
Q ss_pred HHHhcCChhHHHHHHHHHcC--CChhHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 188 IQSKLIPRTMLKHWALHTFL--SATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 188 i~~~~vp~~ll~~~~~~~~~--s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
|.++. ..-+.+||.+.+. ++++|...|.+|+.++ ||+||+||||+.++++
T Consensus 96 i~~~~--~~~l~~~~~~~~~~~~~~~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILi 153 (289)
T cd00893 96 IKKQQ--INSLYDYFLELYGSYTTEAFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILL 153 (289)
T ss_pred HHHhc--cccHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEE
Confidence 33222 2347788888886 4566777888898555 8999999999999985
No 65
>KOG0906|consensus
Probab=97.17 E-value=0.0019 Score=72.62 Aligned_cols=53 Identities=25% Similarity=0.521 Sum_probs=46.8
Q ss_pred EEEEecCCceeeEEEEEecCCc-eeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcC
Q psy15442 98 VDIVEKHNTAARRLYIRGHNGK-IYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQ 154 (599)
Q Consensus 98 v~v~~~~~~~~rri~i~G~dG~-~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~ 154 (599)
.++..| ..-|=+|+++..||. .|+-+.|.| .|+|+|+=|.|..++||.+|.+.
T Consensus 565 ~~~FkS-sl~Pl~l~fkt~~g~g~y~vIFK~G---DDLrQDqlV~Qii~lMd~LLkke 618 (843)
T KOG0906|consen 565 ASLFKS-SLMPLKLTFKTDDGGGKYPVIFKKG---DDLRQDQLVLQIIRLMDRLLKKE 618 (843)
T ss_pred hhhhhh-ccCceeEEEEecCCCCceeEEEecC---cchhHHHHHHHHHHHHHHHhccc
Confidence 444444 477889999999999 999999996 89999999999999999999876
No 66
>KOG0905|consensus
Probab=96.57 E-value=0.01 Score=70.60 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=94.6
Q ss_pred CCceeeEEEEEe--cCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccccccccccccccC--CC-CC--
Q psy15442 104 HNTAARRLYIRG--HNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKMVYISLLYCL--GS-PA-- 176 (599)
Q Consensus 104 ~~~~~rri~i~G--~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~s~~~L~~c~--~~-~~-- 176 (599)
++..|=+|+++| -+|..+.-+.|.| +|+|+|.=++|+.++||++-.+.--- +||+.. .|- +. ..
T Consensus 1066 SNA~PLKitFvnadp~geni~iIfK~g---DDLRQDml~lQmI~iMdkIWl~egLD---lrMViF---rc~stG~~rgMv 1136 (1639)
T KOG0905|consen 1066 SNALPLKITFVNADPLGENISIIFKCG---DDLRQDMLVLQMIRIMDKIWLQEGLD---LRMVIF---RCLSTGYDRGMV 1136 (1639)
T ss_pred CCCcceEEEEecCCCccccceeeeecC---chHHHHHHHHHHHHHHHHHHHhcCCc---eeEEEE---Eeecccccccce
Confidence 468999999999 8899999999996 99999999999999999998655100 333211 121 11 00
Q ss_pred hhhHHHHHHHHHHHh-----cCChhHHHHHHHHHcCCChhHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 177 SSQVMCDILRDIQSK-----LIPRTMLKHWALHTFLSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 177 ~~~~k~eif~~i~~~-----~vp~~ll~~~~~~~~~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
+...-.|-+++|+.. ..-+..+++|+.|-=++..||=..-+.|..+. +|||||+|||=.+|++
T Consensus 1137 ElVp~a~TLrKIQve~GltGsfkD~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl 1210 (1639)
T KOG0905|consen 1137 ELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIML 1210 (1639)
T ss_pred eecccHHHHHHHHHHhccccccccchHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEE
Confidence 111234445555532 24567899999999888889888888888766 6899999999999986
No 67
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=94.87 E-value=0.047 Score=62.74 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=37.1
Q ss_pred eeeEEEEEecCCce-----------eeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcC
Q psy15442 107 AARRLYIRGHNGKI-----------YPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQ 154 (599)
Q Consensus 107 ~~rri~i~G~dG~~-----------y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~ 154 (599)
.|--+-+..-+|-+ |.|++|. +|+|||+=|+|+.++|+.+|+++
T Consensus 1027 ~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~----gDLRQDQLVLQmIrLMDrLLKkE 1081 (1374)
T PTZ00303 1027 APVTSPVTAVNGVSPESLHDSLPQECMFLYKR----ENVERDQLMCISSRLLQMLLSSE 1081 (1374)
T ss_pred cceeeeeeccCCcCccccccccchheeEEEec----CcHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666766 9999999 69999999999999999999886
No 68
>KOG0904|consensus
Probab=93.21 E-value=0.72 Score=54.33 Aligned_cols=192 Identities=15% Similarity=0.185 Sum_probs=103.3
Q ss_pred ecCCceeeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccccccccccccc-cCCCCCh-----hhHHHHHHHHH
Q psy15442 115 GHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKMVYISLLY-CLGSPAS-----SQVMCDILRDI 188 (599)
Q Consensus 115 G~dG~~y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~s~~~L~~-c~~~~~~-----~~~k~eif~~i 188 (599)
|+++ .-.-+.|.| .|+|+|==++|.+++|+.+=..+.-- +||- +| |-...+. -....+-..+|
T Consensus 804 ~s~~-~v~iIFKNG---DDLRQDMLtLQmLriMd~iWk~~glD---lrm~----PYgcls~Gd~iGlIEVV~~s~TIa~I 872 (1076)
T KOG0904|consen 804 GSNL-SVGIIFKNG---DDLRQDMLTLQMLRIMDNIWKTEGLD---LRML----PYGCLSTGDRIGLIEVVRNSETIANI 872 (1076)
T ss_pred ccCC-ceeEEEcCC---chHHHHHHHHHHHHHHHHHHHhcCCC---eecc----ccccccccceeeeEEEecCchhhhhh
Confidence 4555 445667775 89999999999999999998765110 2221 11 2110000 00122223333
Q ss_pred HHh--------cCChhHHHHHHHHHcCCChh-HHHHHHHHHHHh------hccccccccCccceeeecCCCCCCCccccc
Q psy15442 189 QSK--------LIPRTMLKHWALHTFLSATD-YWTFRKMVSSFF------GQNLHHHFRVPGKKTFWISPSMGSDRQTDT 253 (599)
Q Consensus 189 ~~~--------~vp~~ll~~~~~~~~~s~e~-~w~~Rk~fas~l------~yiLgigdR~P~ki~F~vsps~gsv~~tDl 253 (599)
|.+ .+..+.+.+|.-. ....|+ +=..-..|+.+. +|||||||||-.+|+. -.+
T Consensus 873 Q~~~g~~~at~afn~~~L~~WLKe-kNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMv---ke~-------- 940 (1076)
T KOG0904|consen 873 QLNTGNMAATAAFNKDALLNWLKE-KNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMV---KET-------- 940 (1076)
T ss_pred hhccccceeeccCCHHHHHHHHhh-cCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEE---ecc--------
Confidence 322 2345677777644 344555 555555687665 5799999999999973 122
Q ss_pred ccccccccCcchhhhccccceEEEEEEeceEEEeeccccceeEEEEEecCCceeceEeecCCCCccchh-hHHHHHHHHH
Q psy15442 254 EANNIVCSPISELRMIHKVYSILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRR-DERVLQLLRM 332 (599)
Q Consensus 254 es~ni~~~p~~~~~~~~~~~~~~i~~f~~~v~v~~~s~~~pkri~i~GsdG~~y~flvk~~kg~~dlR~-DeRi~Ql~~l 332 (599)
|.. .|+||.=-+..|...+.|-+ -|.-.+...| +-+.++.++. ++.-. -+|..++.--
T Consensus 941 --Gql----------FHIDFGHiLGh~KsKlGi~R-----ERvPFvLT~d---Fl~VI~~G~~-~~~~~eF~kFq~~C~~ 999 (1076)
T KOG0904|consen 941 --GQL----------FHIDFGHILGHFKSKLGINR-----ERVPFVLTYD---FLHVIQKGKT-KNSEKEFQKFQELCEK 999 (1076)
T ss_pred --CcE----------EEEEhhhhhccchhhcCccc-----ccCceEeecc---eeeeecccCC-CCchhHHHHHHHHHHH
Confidence 222 24444433444444433222 2222233222 3334454443 33344 5777777766
Q ss_pred HHHHHhcCccccccCceeccceE
Q psy15442 333 LNHYLAKQKETSKRFLHFTVPRV 355 (599)
Q Consensus 333 ~N~iL~~~~etr~R~L~~~~y~V 355 (599)
.=.+|++| ++|-++.++.
T Consensus 1000 AYl~lr~H-----~nLfi~LFsm 1017 (1076)
T KOG0904|consen 1000 AYLALRRH-----GNLFISLFSM 1017 (1076)
T ss_pred HHHHHHHc-----cccHHHHHHH
Confidence 66677766 4676665543
No 69
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=86.53 E-value=5.2 Score=43.39 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=72.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHH
Q psy15442 318 SDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYY 397 (599)
Q Consensus 318 ~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~ 397 (599)
.++..|..+..|+..+|.-.... .+.+.++.+++-+...|-.|+++..- |.
T Consensus 78 Rsl~~d~~f~~l~~~ln~~~~~~------~~~l~~~~~l~~g~~YgW~EfI~~~~---------c~-------------- 128 (370)
T PF13575_consen 78 RSLSIDKAFNDLLEWLNEKNGTP------SLDLPTPKVLDRGDGYGWQEFIEHEP---------CN-------------- 128 (370)
T ss_pred cccHHHHHHHHHHHHHhhhcccc------ccccccceeeeccCcceeEEEecCCC---------CC--------------
Confidence 78899999999999999754321 35678889999888899999998521 11
Q ss_pred HHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCc
Q psy15442 398 DRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDS 454 (599)
Q Consensus 398 ~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~ 454 (599)
....-++|=..++....+.|+||..|-|-+||..+...--+ ||+-..
T Consensus 129 ----~~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g~~Pvl------IDlETl 175 (370)
T PF13575_consen 129 ----SEEEVERYYYRLGVLLALLYLLNGTDLHFENIIASGEYPVL------IDLETL 175 (370)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeCCCcEE------Eehhhh
Confidence 00112466667788999999999999999999987543333 677644
No 70
>KOG0608|consensus
Probab=65.02 E-value=5.8 Score=46.00 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=27.7
Q ss_pred HHHHHHHhcCC----CCCCCceeEEcCCCceeeeeeeeeccCccc
Q psy15442 416 ACFAEYVLHLT----RLNPDMMYLHRDCGLLNVSYFKFDIDDSKG 456 (599)
Q Consensus 416 ~S~~~Yilglg----DRhp~nIll~~~tG~v~~~~~hiDf~~~~g 456 (599)
.|.+.+|-..| |-.|||||||+ .|++-.+ |||-|+|
T Consensus 739 tcAiesVHkmGFIHRDiKPDNILIDr-dGHIKLT----DFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFIHRDIKPDNILIDR-DGHIKLT----DFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccceecccCccceEEcc-CCceeee----ecccccc
Confidence 45566665554 56799999998 6999544 9999999
No 71
>KOG0903|consensus
Probab=43.05 E-value=1.1e+02 Score=36.48 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=63.8
Q ss_pred eeEEeecCCCCCCcchhhHHHHHHHHHHHHHhcCcccccccccccccccccCCCCC---hhhHHHHHHHHHHHhcCChhH
Q psy15442 121 YPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKMVYISLLYCLGSPA---SSQVMCDILRDIQSKLIPRTM 197 (599)
Q Consensus 121 y~flvk~~~~~~~~R~deRv~Qlf~~~N~~L~~~~et~~riR~s~~~L~~c~~~~~---~~~~k~eif~~i~~~~vp~~l 197 (599)
-+-+||.| .|+|||-=-.||...|=.+-.....=-= ||...| +|..+.. ++..-.--...|-+++.-..-
T Consensus 588 ~SVIVKtG---dDLrQE~fA~Qli~~f~~IW~EegvplW-lRpykI---lvtss~sGLIEtI~da~SIHsIKk~l~~~~~ 660 (847)
T KOG0903|consen 588 RSVIVKTG---DDLRQELFAYQLISAFKDIWQEEGVPLW-LRPYKI---LVTSSDSGLIETIVDAMSIHSIKKRLPNLAS 660 (847)
T ss_pred EEEeeecC---chHHHHHHHHHHHHHHHHHHHHcCCcce-eeeEEE---EEEecCccceeeccchhhHHHHHHhcchhhh
Confidence 45678886 8999999999999988887765421000 221111 1211000 000001112223333322234
Q ss_pred HHHHHHHHc-CCChhHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 198 LKHWALHTF-LSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 198 l~~~~~~~~-~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
++.|+.... ++++.|-..-+.|.+++ +|+|.+-|||=.+++.
T Consensus 661 l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvKDRHNGNILi 709 (847)
T KOG0903|consen 661 LRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILI 709 (847)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCceEe
Confidence 555555544 35677777788887554 7899999999999983
No 72
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=37.13 E-value=2.9e+02 Score=27.08 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhcCccccccCceeccceEEecCCC--------ceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHH
Q psy15442 324 ERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQ--------LRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVR 395 (599)
Q Consensus 324 eRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~--------~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~ 395 (599)
.|..+=++.++.+... .+.||.+|..... .=+.|.++++.+|.+++...-. .+..
T Consensus 56 ~ra~~E~~~~~~L~~~---------Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~-----~~~~--- 118 (206)
T PF06293_consen 56 SRAKREWRNLQRLREA---------GIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ-----LDPS--- 118 (206)
T ss_pred hHHHHHHHHHHHHHHc---------CCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc-----cchh---
Confidence 3555556666665553 3667777766544 2256899999999999886322 0000
Q ss_pred HHHHhhhhhhHhhHHHhHhHHHHHHHHhc--CCCCCCCceeEEcCCCceeeeeeeeeccCc
Q psy15442 396 YYDRLGTLQSRGNMTLQLALACFAEYVLH--LTRLNPDMMYLHRDCGLLNVSYFKFDIDDS 454 (599)
Q Consensus 396 ~~~kl~~~q~r~~Ft~slA~~S~~~Yilg--lgDRhp~nIll~~~tG~v~~~~~hiDf~~~ 454 (599)
.+..+..++|...--=+-.| =||-++.|||++...|..-. +=|||+-+
T Consensus 119 ---------~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~--~lIDld~~ 168 (206)
T PF06293_consen 119 ---------QRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRF--YLIDLDRM 168 (206)
T ss_pred ---------hHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeE--EEEcchhc
Confidence 11233333333322222223 47899999999987643321 34788854
No 73
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=34.57 E-value=2.2e+02 Score=34.18 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=61.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCceeEEeCCCCccHHHHHHHhhhhhCCCCCCcHHHHH
Q psy15442 318 SDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYY 397 (599)
Q Consensus 318 ~dlR~DeRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~gLIE~v~~~~tL~~i~~~~~~~~g~~~d~pi~~~~ 397 (599)
.++..|+...+++..+|.-... ..++++.++.- .+.|-.|+++.. .|.
T Consensus 121 r~l~~d~~f~~~l~~ln~~~~~--------~~~~~~~~l~~-~~ygw~EfI~~~---------~c~-------------- 168 (825)
T cd04792 121 RSLSVDALFQELLEWLNSFLGA--------LPLRTPKVLDR-GDYGWEEFIEHQ---------PCQ-------------- 168 (825)
T ss_pred CCchHHHHHHHHHHHHHhcCCc--------cccccceeeec-CCcceEEeecCC---------CCC--------------
Confidence 7899999999999999964332 22467888865 567999998851 121
Q ss_pred HHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEc
Q psy15442 398 DRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHR 437 (599)
Q Consensus 398 ~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~ 437 (599)
....-++|=.-++.+..+.|+|+..|-|-+||.-+.
T Consensus 169 ----~~~e~~~fY~r~G~llal~y~L~~tD~H~ENiIA~g 204 (825)
T cd04792 169 ----SKEEVERYYYRLGGLLALLYLLNATDLHFENIIASG 204 (825)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHcCCcccchhhheeeC
Confidence 001124666677889999999999999999996653
No 74
>KOG0902|consensus
Probab=28.01 E-value=1.7e+02 Score=37.43 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=33.2
Q ss_pred HHHHHHHHc--CCChhHHHHHHHHHHHh------hccccccccCccceee
Q psy15442 198 LKHWALHTF--LSATDYWTFRKMVSSFF------GQNLHHHFRVPGKKTF 239 (599)
Q Consensus 198 l~~~~~~~~--~s~e~~w~~Rk~fas~l------~yiLgigdR~P~ki~F 239 (599)
|-+||...+ .++++|-..|.+|.++. +|.|.+-|||-+++++
T Consensus 1617 lyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~ 1666 (1803)
T KOG0902|consen 1617 LYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMI 1666 (1803)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeE
Confidence 445555555 36889999999998555 6799999999999986
No 75
>KOG0598|consensus
Probab=26.69 E-value=36 Score=36.94 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=19.6
Q ss_pred CCCCCceeEEcCCCceeeeeeeeeccCcc
Q psy15442 427 RLNPDMMYLHRDCGLLNVSYFKFDIDDSK 455 (599)
Q Consensus 427 DRhp~nIll~~~tG~v~~~~~hiDf~~~~ 455 (599)
|--|+|||+|. .|+|..+ |||-|+
T Consensus 150 DlKPENILLd~-~GHi~Lt----DFgL~k 173 (357)
T KOG0598|consen 150 DLKPENILLDE-QGHIKLT----DFGLCK 173 (357)
T ss_pred cCCHHHeeecC-CCcEEEe----ccccch
Confidence 66799999996 7999654 999875
No 76
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=24.86 E-value=53 Score=31.63 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.3
Q ss_pred CCCCCCCceeEEcCCCceeeeeeeeeccCc
Q psy15442 425 LTRLNPDMMYLHRDCGLLNVSYFKFDIDDS 454 (599)
Q Consensus 425 lgDRhp~nIll~~~tG~v~~~~~hiDf~~~ 454 (599)
=+|-+|+||+++ +|++. =||||.+
T Consensus 141 HrDlkP~NIll~--~~~~~----liDFG~a 164 (190)
T cd05145 141 HGDLSEYNILYH--DGKPY----IIDVSQA 164 (190)
T ss_pred cCCCChhhEEEE--CCCEE----EEEcccc
Confidence 368899999998 68883 3699976
No 77
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=24.72 E-value=63 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=22.2
Q ss_pred HHHhcCCCCCCCceeEEcCCCceeeeeeeeeccCc
Q psy15442 420 EYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDS 454 (599)
Q Consensus 420 ~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~~~ 454 (599)
...+.=||-||+||+++ .|++ .=|||+.+
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~----~liDf~~a 134 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRL----WLIDWEYA 134 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeE----EEEecccc
Confidence 44456699999999998 5677 45799865
No 78
>KOG2345|consensus
Probab=23.71 E-value=8.9e+02 Score=25.66 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.8
Q ss_pred cccceeEEEEEecCCceeceEee
Q psy15442 290 HNTAARRLYIRGHNGKIYPYLVM 312 (599)
Q Consensus 290 s~~~pkri~i~GsdG~~y~flvk 312 (599)
.+.++|-...+|.-|-.+.||||
T Consensus 19 n~~Ryri~~~LgeGGfsfv~LV~ 41 (302)
T KOG2345|consen 19 NNKRYRIQRLLGEGGFSFVDLVK 41 (302)
T ss_pred cCceEEEeeeecCCCceeeeeec
Confidence 56788999999999999999998
No 79
>KOG0605|consensus
Probab=23.53 E-value=43 Score=38.20 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.3
Q ss_pred CCCCCceeEEcCCCceeeeeeeeeccCccccc
Q psy15442 427 RLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEF 458 (599)
Q Consensus 427 DRhp~nIll~~~tG~v~~~~~hiDf~~~~g~~ 458 (599)
|--|+|+|||. +||+-.+ |||-|.|..
T Consensus 266 DIKPdNlLiD~-~GHiKLS----DFGLs~gl~ 292 (550)
T KOG0605|consen 266 DIKPDNLLIDA-KGHIKLS----DFGLSTGLD 292 (550)
T ss_pred cCChhheeecC-CCCEeec----cccccchhh
Confidence 45699999997 7999765 999998853
No 80
>KOG3087|consensus
Probab=22.24 E-value=8.5e+02 Score=24.85 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=74.1
Q ss_pred EecCCceeceEeecCCCCccchhh-----HHHHHHHHHHHHHHhcCccccccCceeccceEEecCCCce--eEEeCCCCc
Q psy15442 300 RGHNGKIYPYLVMNDSGLSDSRRD-----ERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQLR--LVEDNPASL 372 (599)
Q Consensus 300 ~GsdG~~y~flvk~~kg~~dlR~D-----eRi~Ql~~l~N~iL~~~~etr~R~L~~~~y~ViPLs~~~g--LIE~v~~~~ 372 (599)
.--+|+.+---..+.|+=.+.-.| .|..|=.++++++.. +-+..|.++-+.+.-+ .+||++++.
T Consensus 26 ~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~---------~GI~~P~l~~~D~~~~~i~ME~~~g~~ 96 (229)
T KOG3087|consen 26 GSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRA---------LGIPAPRLIFIDTYGGQIYMEFIDGAS 96 (229)
T ss_pred eccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHH---------hCCCCceEEEEecCCCeEEEEeccchh
Confidence 334455433333344443444444 455566666665443 4578899988655555 569999999
Q ss_pred cHHHHHHHhhhhhCCCCCCcHHHHHHHhhhhhhHhhHHHhHhHHHHHHHHhcCCCCCCCceeEEcCCCceeeeeeeeecc
Q psy15442 373 SLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDID 452 (599)
Q Consensus 373 tL~~i~~~~~~~~g~~~d~pi~~~~~kl~~~q~r~~Ft~slA~~S~~~YilglgDRhp~nIll~~~tG~v~~~~~hiDf~ 452 (599)
++.+.+...+.....+ .-+..+..+ +-..+|-+=--.+| =||-..+||++....+++.. +=||||
T Consensus 97 ~vk~~i~~~~~~~~~d--~~~~~~~~~---------iG~~igklH~ndii--HGDLTTSNill~~~~~~~~~--~lIdfg 161 (229)
T KOG3087|consen 97 TVKDFILSTMEDESED--EGLAELARR---------IGELIGKLHDNDII--HGDLTTSNILLRSDGNQITP--ILIDFG 161 (229)
T ss_pred HHHHHHHHHccCcccc--hhHHHHHHH---------HHHHHHHhhhCCee--cccccccceEEecCCCcCce--EEEeec
Confidence 9998877765421111 111122222 22222222222222 37999999999988777643 568998
Q ss_pred Cc
Q psy15442 453 DS 454 (599)
Q Consensus 453 ~~ 454 (599)
..
T Consensus 162 ls 163 (229)
T KOG3087|consen 162 LS 163 (229)
T ss_pred ch
Confidence 64
No 81
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=22.20 E-value=55 Score=31.86 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=18.9
Q ss_pred CCCCCCceeEEcCCCceeeeeeeeeccCc
Q psy15442 426 TRLNPDMMYLHRDCGLLNVSYFKFDIDDS 454 (599)
Q Consensus 426 gDRhp~nIll~~~tG~v~~~~~hiDf~~~ 454 (599)
+|-+|+|||++ +|.+ .=||||.+
T Consensus 142 rDlkP~NIli~--~~~v----~LiDFG~a 164 (190)
T cd05147 142 ADLSEYNLLYH--DGKL----YIIDVSQS 164 (190)
T ss_pred CCCCHHHEEEE--CCcE----EEEEcccc
Confidence 78899999998 4787 34799976
No 82
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=20.57 E-value=83 Score=29.99 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=19.7
Q ss_pred CCCCCCCceeEEcCCCceeeeeeeeeccCc
Q psy15442 425 LTRLNPDMMYLHRDCGLLNVSYFKFDIDDS 454 (599)
Q Consensus 425 lgDRhp~nIll~~~tG~v~~~~~hiDf~~~ 454 (599)
=||-+|.||+++ .|++ .=|||+.+
T Consensus 113 H~Dl~~~Nil~~--~~~~----~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKL----YLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcE----EEEECCCC
Confidence 479999999998 6888 45799865
Done!