RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15442
(599 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 78.9 bits (194), Expect = 2e-15
Identities = 109/582 (18%), Positives = 167/582 (28%), Gaps = 238/582 (40%)
Query: 34 KSCLIEEKCRYLSNFNLHTAEIELPGEY--LLPKHSH----YY---VRISSPIS------ 78
CL E + YL ++H +L E L K Y + P
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 79 ---------------------------ELRMIHKVYSILFYRFMPRV-DIVEKHNTAARR 110
ELR +++ Y V D+++ +A
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-------VLVGDLIK---FSAET 194
Query: 111 LYIRGHNGKIYPYLVMNDSGLSDSRRD-----ERVLQLLRMLNH--------YLAKQVST 157
L S L + D + L +L L + YL
Sbjct: 195 L-----------------SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS---- 233
Query: 158 TTTTKMVYISL-LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWA---LH-------TF 206
+ IS L + A V +L P + + H
Sbjct: 234 ------IPISCPLIGVIQLAHYVVTAKLL-----GFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 207 LSATDYWTFRKMVSSFFGQNLHHHFRVPGKKTFWI-------------SPSMGSDRQTDT 253
++ TD W SFF ++ V F+I PS+ D +
Sbjct: 283 IAETDSW------ESFF-VSVRKAITV----LFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 254 EANNIVCSPISELRMIHKVYSILFYRFMPRVDI---VEKHNT---AARRLYIRGHNGKIY 307
E V SP M+ SI + + + V K N+ A +++ I NG
Sbjct: 332 EG---VPSP-----ML----SI---SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--- 373
Query: 308 P-YLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKET----------SKRFLHFTVPRVV 356
LV+ SG S L LN L K K S+R L F+ R +
Sbjct: 374 AKNLVV--SGPPQS---------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-RFL 421
Query: 357 PVSA----QLRLVEDNPA-SLSLLDIYKTSC----SQIKIDYELPIVRYYDRLGT-LQS- 405
PV++ L L PA L D+ K + I+I P+ +D G+ L+
Sbjct: 422 PVASPFHSHL-L---VPASDLINKDLVKNNVSFNAKDIQI----PVYDTFD--GSDLRVL 471
Query: 406 RGNMTLQLALACFAEYVLHLTRLNPDMMYLH-RDCGLLNVSYFKFDIDDSKGEFNNSRLE 464
G+++ ++ V H D G S L
Sbjct: 472 SGSISERIVDCIIRLPV-KWETTT-QFKATHILDFGPGGASGL-------------GVL- 515
Query: 465 FENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNR 506
+ N DG GV +I+ G L+ N
Sbjct: 516 -------------------THRNKDGTGVRVIVA-GTLDINP 537
Score = 47.0 bits (111), Expect = 2e-05
Identities = 49/296 (16%), Positives = 89/296 (30%), Gaps = 97/296 (32%)
Query: 242 SPSMGSD-RQTDTEANNIVCSPISELRMIHKVYSILFYRFMPRVDIVEKHNTAARRLYIR 300
MG D +T A + V + +SIL DIV +N ++
Sbjct: 1628 EQGMGMDLYKTSKAAQD-VWNRADNHFKDTYGFSIL--------DIV-INNPVNLTIHFG 1677
Query: 301 GHNGK-IYP-YLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQK-ETSKRFLHFTVPRVVP 357
G GK I Y M + D + + ++ + +N + + K L T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGK--LKTEKIFKEINEHSTSYTFRSEKGLLSATQ----- 1730
Query: 358 VSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQSRGNMTLQ----- 412
Q PA + + + L+S+G +
Sbjct: 1731 -FTQ-------PA------LTLMEKAAFED---------------LKSKGLIPADATFAG 1761
Query: 413 --L----ALACFAEYVLHLTRLNPDMMYL--HRDCGLLNVSYFKFDIDDSKGEFNNSR-- 462
L ALA A+ V+ + ++ + +R G+ + + E S
Sbjct: 1762 HSLGEYAALASLAD-VMSIE----SLVEVVFYR--GMT------MQVAVPRDELGRSNYG 1808
Query: 463 ------------LEFENLSDSAKEIFRQKN-LSEV--YSNVDGAGVIIIIILGELN 503
E L + + ++ L E+ Y NV+ + G+L
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-NVENQ---QYVAAGDLR 1860
Score = 43.1 bits (101), Expect = 2e-04
Identities = 77/497 (15%), Positives = 137/497 (27%), Gaps = 178/497 (35%)
Query: 167 SLLYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYWT-FRKMVSSFFGQ 225
SL + L P +S + L++ +K++P A + + F VSS
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP 74
Query: 226 N-----------LHHHFRVPGKKTFWISPSMGSDRQTDTEANNI---VCS-PISELRMIH 270
+ F + + N+I +
Sbjct: 75 SKVGQFDQVLNLCLTEFE----NCY-----LEG--------NDIHALAAKLLQENDTTLV 117
Query: 271 KVYSIL--FY--RFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERV 326
K ++ + R M + +K N+A L+ G + G +D +E
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTDDYFEE-- 172
Query: 327 LQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQL--RLVEDNPASLSL----LDIY-- 378
LR L Y +T + ++ SA+ L+ + + L+I
Sbjct: 173 ---LRDL--Y-----QTYHVLVG----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 379 -KTSCSQIKIDY------ELPIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPD 431
+ + DY P+ +G +Q LA + L P
Sbjct: 219 LENPSNTPDKDYLLSIPISCPL------IGVIQ----------LAHYV-VTAKLLGFTPG 261
Query: 432 MMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENL--------SDSAKEIFRQKNLSE 483
+ G S + L +DS + F
Sbjct: 262 ELR-SYLKGATGHS--------------------QGLVTAVAIAETDSWES-F------- 292
Query: 484 VYSNVDGAGVIIIIILGELNSNRPVP-FRLTPNIMEFLTDIGVDGP---LTASIIATARC 539
+ +V A + ++ +G + P L P+I+E + P L SI +
Sbjct: 293 -FVSVRKA-ITVLFFIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPML--SISNLTQE 347
Query: 540 LVQ-----------PNFQVHAI--------------------LKAILRDEMIAI------ 562
VQ QV I L LR
Sbjct: 348 QVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 563 ----QKKVKCS--YLPI 573
++K+K S +LP+
Sbjct: 407 IPFSERKLKFSNRFLPV 423
Score = 39.6 bits (92), Expect = 0.004
Identities = 52/318 (16%), Positives = 93/318 (29%), Gaps = 104/318 (32%)
Query: 292 TAARRLYIRGHNGKI-YPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETS------ 344
+ R L + +G + + LV S S+ E+ ++L A E +
Sbjct: 4 YSTRPLTL--SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 345 KRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQ 404
+FL + LVE + +D++
Sbjct: 62 GKFLGYVS----------SLVEPSKVGQ------------------------FDQV---- 83
Query: 405 SRGNMTLQLALACFAEYVL-----H--LTRLNPDMMYLHRDCGLLNVSYFK--FDIDDSK 455
L L L F L H +L + L +Y
Sbjct: 84 ------LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 456 GEFNNSRLEFENLSDSAKEIFR----QKN-------LSEVYSNVDGAGVIIIII------ 498
+ +NS L F + + ++ Q N L ++Y ++ +I
Sbjct: 138 DKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHVLVGDLIKFSAET 194
Query: 499 LGELNSNRPVPFRLTP---NIMEFLTD------------IGVDGPL-----TASIIATAR 538
L EL ++ NI+E+L + I + PL A + TA+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 539 CL-VQPNFQVHAILKAIL 555
L P ++ + LK
Sbjct: 255 LLGFTPG-ELRSYLKGAT 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 1e-11
Identities = 84/605 (13%), Positives = 175/605 (28%), Gaps = 175/605 (28%)
Query: 1 MWYMVPGATKLH----NLISKLKKWIKILEAKNKLLP-------KSCLIEEKCRYLSNFN 49
++ K + KL++ + L +L K+ + + C
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS----- 173
Query: 50 LHTAEIELPGEYLLPKHSHYYVRIS---SPISELRMIHKVYSILFYRFMPRVDIVE--KH 104
+ + ++ + +++ + SP + L M+ K+ + + R D K
Sbjct: 174 -YKVQCKMDFKI-------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 105 NTAARRLYIRGH-NGKIYP--YLVMNDSGLSDSRRDERVLQLL----RML----NHYLAK 153
+ + +R K Y LV+ + ++ + ++L +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNV------QNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 154 QVSTTTTTKMVYISLLYCLGSPASSQVMCDILRDIQSKLIPRTMLKHWALHTFLSATDYW 213
+S TTT + L ++ L D + + +PR +L
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRL-------- 330
Query: 214 TFRKMVSSFFGQNLHHHFRVPGKKTFWISPSMGSDRQTDTEANNIVCSPISELRMIHKVY 273
S +++ W + D+ T +++ +E R +
Sbjct: 331 -------SIIAESIRDG---LATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 274 SILFYRFMPRVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRML 333
S+ F P I P +L L+
Sbjct: 379 SV----FPPSAHI---------------------P---------------TILLSLI--- 395
Query: 334 NHYLAKQKETSKRFLHFTVPRVVPVSAQLRLVEDNPA--SLSLLDIYKTSCSQIKIDYEL 391
+ K ++ + LVE P ++S+ IY +++ +Y L
Sbjct: 396 --WFDVIKSDVMVVVNK--------LHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 392 --PIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDM-MYLHRDCGLLNVSY-- 446
IV +Y+ T S L D Y H + +
Sbjct: 446 HRSIVDHYNIPKTFDSD-----------------DLIPPYLDQYFYSH-------IGHHL 481
Query: 447 FKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELN--- 503
+ + F L+F F ++ + + + +G I+ L +L
Sbjct: 482 KNIEHPERMTLFRMVFLDFR---------FLEQKIRHDSTAWNASGSILNT-LQQLKFYK 531
Query: 504 ----SNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATARCLVQPNFQVHAILKAILRDEM 559
N P RL I++FL I I + L++ +AI +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIE-----ENLICSKYTDLLRIALMAED--EAIFEEAH 584
Query: 560 IAIQK 564
+Q+
Sbjct: 585 KQVQR 589
Score = 56.8 bits (136), Expect = 2e-08
Identities = 56/390 (14%), Positives = 113/390 (28%), Gaps = 88/390 (22%)
Query: 225 QNLHHHFRVPGKKTFWISPSMGSDRQ--TDTEANNIVCSPISELRMIHKVYSILFYRFMP 282
+++ F F + + E ++I+ S + R
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT---------LRLF- 68
Query: 283 RVDIVEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKE 342
+ + ++ Y +L+ S + +R ++ RM +
Sbjct: 69 --WTLLSKQEEMVQKFVEEVLRINYKFLM---SPIKTEQRQPSMMT--RMYIEQRDRLYN 121
Query: 343 TSKRFLHFTVPRVVPVSAQLR--LVEDNPASLSLLD----IYKTS-----CSQIKIDYEL 391
++ F + V R+ P +LR L+E PA L+D KT C K+ ++
Sbjct: 122 DNQVFAKYNVSRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 392 PIVRYYDRLGTLQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDI 451
++ L S + L + +++P+ + S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLY--------QIDPNW------TSRSDHSS----- 221
Query: 452 DDSKGEFNNSRLEFENLSDSAKEIFRQKNLSE---VYSNVDGAGVI--------III--- 497
N +L ++ + + + K V NV A I++
Sbjct: 222 --------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 498 ---ILGELNSNRPVPFRLTPNIMEFLTDIGVDGPLTASIIATAR-------CLVQPNFQV 547
+ L++ L + M D L + P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNP--RR 329
Query: 548 HAILKAILRDEMIAIQ--KKVKCSYLPIII 575
+I+ +RD + K V C L II
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Score = 32.1 bits (72), Expect = 0.67
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 431 DMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSRLEFENLSDSAKEIFRQKNLSEVY---SN 487
+ Y ++D + F + D +++ D K I ++ + +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFD------------CKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 488 VDGAGVIIIIIL--GELNSNRPVPFRLTPNIMEFLTD 522
V G + +L E + V L N +FL
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMS 96
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 39.8 bits (92), Expect = 0.003
Identities = 19/165 (11%), Positives = 56/165 (33%), Gaps = 13/165 (7%)
Query: 303 NGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQL 362
+ + + + D R+D +LQ+LR++ + L + ++
Sbjct: 683 SNETIGIIFKHGD---DLRQDMLILQILRIMESIWETE----SLDLCLLPYGCISTGDKI 735
Query: 363 RLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTL-----QSRGNMTLQLALAC 417
++E + ++ I +++ + + + + + A C
Sbjct: 736 GMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYC 795
Query: 418 FAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNSR 462
A +VL + + D + + L ++ F + + K ++
Sbjct: 796 VATFVLGIGDRHNDNIMISETGNLFHID-FGHILGNYKSFLGINK 839
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 34.4 bits (78), Expect = 0.11
Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 15/185 (8%)
Query: 291 NTAARRLYIRGHNGKIY---PYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRF 347
++ + L+I + + ++ +G D R+D LQ++++++ ++
Sbjct: 649 DSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQEGLD---- 703
Query: 348 LHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSC-----SQIKIDYELPIVRYYDRLGT 402
L T +P + L+E S ++ +I + D L ++ +
Sbjct: 704 LRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALLNWLKSKNPGEA 763
Query: 403 LQS-RGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSY-FKFDIDDSKGEFNN 460
L TL A C A YVL + + D + + L ++ + +K N
Sbjct: 764 LDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGHFLGNFKTKFGINR 823
Query: 461 SRLEF 465
R+ F
Sbjct: 824 ERVPF 828
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 31.4 bits (70), Expect = 1.00
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)
Query: 302 HNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKRFLHFTVPRVVPVSAQ 361
+ N D R+D LQ+LR+++ + L + +
Sbjct: 817 FGEDSVGVIFKNGD---DLRQDMLTLQMLRLMDLLWKEA----GLDLRMLPYGCLATGDR 869
Query: 362 LRLVEDNPASLSLLDIYKTSCSQIKIDY--ELPIVRYYDRLGTL----QSRGNMTLQLAL 415
L+E S ++ DI S + + ++ + + ++ TL A
Sbjct: 870 SGLIEVVSTSETIADIQLNSSNVAATAAFNKDALLNWLKEYNSGDDLDRAIEEFTLSCAG 929
Query: 416 ACFAEYVLHLTRLNPDMMYLHRDCGLLNVSY-FKFDIDDSKGEFNNSRLEF 465
C A YVL + + D + + + L ++ + SK R+ F
Sbjct: 930 YCVASYVLGIGDRHSDNIMVKKTGQLFHIDFGHILGNFKSKFGIKRERVPF 980
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.3
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 19 KKWIKILEAKNKLL-PKS 35
K+ +K L+A KL S
Sbjct: 19 KQALKKLQASLKLYADDS 36
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance,
broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP:
e.3.1.1
Length = 262
Score = 29.9 bits (67), Expect = 2.3
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 105 NTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQVSTTTTTKMV 164
NTAA L ++ G G +R D LN + T+T +
Sbjct: 105 NTAANLL-LKTIGGPAAVTAFARSVGDERTRLDRW----EVELNSAIPGDPRDTSTPAAL 159
Query: 165 YISL----LYCLGSPASSQVMCDILRDIQSKLIPRTMLKHW 201
+ SP ++ D +R Q+ + + + W
Sbjct: 160 AVGYRAILAGDALSPPQRGLLEDWMRANQTSSMRAGLPEGW 200
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 29.8 bits (66), Expect = 2.8
Identities = 25/175 (14%), Positives = 61/175 (34%), Gaps = 9/175 (5%)
Query: 287 VEKHNTAARRLYIRGHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQKETSKR 346
+ K +L+ + +G YP + + D R+D+ +LQ++ +++ L
Sbjct: 346 LFKSALMPAQLFFKTEDGGKYPVIFKHGD---DLRQDQLILQIISLMDKLL----RKENL 398
Query: 347 FLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLGTLQSR 406
L T +V+ S + ++ + + ++ T S + + +
Sbjct: 399 DLKLTPYKVLATSTKHGFMQFIQSV-PVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVM 457
Query: 407 GNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKGEFNNS 461
A C Y+L + + D + L + L ++ F + +
Sbjct: 458 DTYVKSCAGYCVITYILGVGDRHLDNLLLTKTGKLFHID-FGYILGRDPKPLPPP 511
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix,
TETR fold, structural genomics, PSI, prote structure
initiative; HET: MSE; 1.52A {Rhodococcus SP}
Length = 214
Score = 28.3 bits (63), Expect = 5.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 224 GQNLHHHFRVPGKKTFWISPSMGSDRQT 251
G + HHH G++ + + SD T
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHVTSDPGT 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.417
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,260,787
Number of extensions: 562787
Number of successful extensions: 1513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 25
Length of query: 599
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 500
Effective length of database: 3,937,614
Effective search space: 1968807000
Effective search space used: 1968807000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)